Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 311 of 433
Found at i:96969960 original size:54 final size:54
Alignment explanation
Indices: 96969895--96970143 Score: 239
Period size: 54 Copynumber: 4.5 Consensus size: 54
96969885 GGAAAAATGG
* * * * *
96969895 TAATTTTACCCTACAAGAGTATCTCAGTAATTCTACCTTACAGGAGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGAGTATTTCGA
* * * *
96969949 TAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACA-AAGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGA-GTATTTCGA
* * *
96970003 TAATTCTACCCTATAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGAGTATTTCGA
* * * * * *
96970057 TATTTCTACCCCACAGGGGTATTTCGGTATTTCAGTATTTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACA-----A---GGGTATTTCAGTAATTCTACCCTACAGGAGTATTTCGA
*
96970119 TATTTCTACCCTACAAGGGTATTTC
1 TAATTCTACCCTACAAGGGTATTTC
96970144 GACATTTCTA
Statistics
Matches: 160, Mismatches: 25, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
53 1 0.01
54 109 0.68
57 1 0.01
59 1 0.01
62 48 0.30
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (54 bp):
TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGAGTATTTCGA
Found at i:96970036 original size:81 final size:81
Alignment explanation
Indices: 96969897--96970169 Score: 250
Period size: 81 Copynumber: 3.3 Consensus size: 81
96969887 AAAAATGGTA
* *
96969897 ATTT-TACCCTAC-AAGAGTATCTCAGTAATTCTACCTTACAGGAGTATTTCAATAATTCTACCC
1 ATTTCTACCCTACAAAG-GTATTTCGGTAATTCTACCTTACAGGAGTATTTCAATAATTCTACCC
96969960 TACAGGGGTATTTC-AGT
65 TACAGGGGTATTTCGA-T
* *
96969977 ATTTCTACCCTACAAAGGTATTTCGGTAATTCTACCCTATA-AGG-GTATTTTAGTAATTCTACC
1 ATTTCTACCCTACAAAGGTATTTCGGTAATTCTA-CCT-TACAGGAGTATTTCAATAATTCTACC
96970040 CTACAGGGGTATTTCGAT
64 CTACAGGGGTATTTCGAT
* ** * * ** *
96970058 ATTTCTACCCCACAGGGGTATTTCGGTATTTCAGTATTTCTACCCTACAGGGGTATTTCGGTATT
1 ATTTCTACCCTACAAAGGTATTTCGG----T-A--A-TTCTACCTTACAGGAGTATTTCAATAAT
* *
96970123 TCTACCCTACAAGGGTATTTCGAC
58 TCTACCCTACAGGGGTATTTCGAT
* * *
96970147 ATTTCTATCCAACAAGGGTATTT
1 ATTTCTACCCTACAAAGGTATTT
96970170 TAGTAATTTT
Statistics
Matches: 162, Mismatches: 16, Indels: 21
0.81 0.08 0.11
Matches are distributed among these distances:
80 4 0.02
81 79 0.49
82 10 0.06
83 2 0.01
85 1 0.01
86 1 0.01
87 2 0.01
88 6 0.04
89 57 0.35
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.36
Consensus pattern (81 bp):
ATTTCTACCCTACAAAGGTATTTCGGTAATTCTACCTTACAGGAGTATTTCAATAATTCTACCCT
ACAGGGGTATTTCGAT
Found at i:96970086 original size:35 final size:35
Alignment explanation
Indices: 96970047--96970124 Score: 131
Period size: 35 Copynumber: 2.2 Consensus size: 35
96970037 ACCCTACAGG
96970047 GGTATTTC-GATATTTCTACCCCACAGGGGTATTTC
1 GGTATTTCAG-TATTTCTACCCCACAGGGGTATTTC
*
96970082 GGTATTTCAGTATTTCTACCCTACAGGGGTATTTC
1 GGTATTTCAGTATTTCTACCCCACAGGGGTATTTC
96970117 GGTATTTC
1 GGTATTTC
96970125 TACCCTACAA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
35 40 0.98
36 1 0.02
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (35 bp):
GGTATTTCAGTATTTCTACCCCACAGGGGTATTTC
Found at i:96970101 original size:62 final size:62
Alignment explanation
Indices: 96970020--96970144 Score: 205
Period size: 62 Copynumber: 2.0 Consensus size: 62
96970010 ACCCTATAAG
* *
96970020 GGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCCACAGGGGTATTTC
1 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCCACAAGGGTATTTC
* * *
96970082 GGTATTTCAGTATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCCACAAGGGTATTTC
96970144 G
1 G
96970145 ACATTTCTAT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.38
Consensus pattern (62 bp):
GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCCACAAGGGTATTTC
Found at i:96970126 original size:89 final size:89
Alignment explanation
Indices: 96969993--96970169 Score: 246
Period size: 89 Copynumber: 2.0 Consensus size: 89
96969983 ACCCTACAAA
* * * * *
96969993 GGTATTTCGGTAATTCTACCCTATAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGAT
1 GGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAC
* *
96970058 ATTTCTACCCCACAGGGGTATTTC
66 ATTTCTACCCAACAAGGGTATTTC
* * * *
96970082 GGTATTTCAGTATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGAC
1 GGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAC
*
96970147 ATTTCTATCCAACAAGGGTATTT
66 ATTTCTACCCAACAAGGGTATTT
96970170 TAGTAATTTT
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
89 76 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (89 bp):
GGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAC
ATTTCTACCCAACAAGGGTATTTC
Found at i:96970191 original size:27 final size:26
Alignment explanation
Indices: 96970157--96970606 Score: 360
Period size: 27 Copynumber: 16.7 Consensus size: 26
96970147 ATTTCTATCC
* **
96970157 AACAAGGGTATTTTAGTAATTTTGTA
1 AACAAGGGTATTTTGGTAATTTTACA
* *** * * *
96970183 AATCGAGGGTAAAATAGTAATTCTATA
1 AA-CAAGGGTATTTTGGTAATTTTACA
*
96970210 AATCAAGGGTACTTTGGTAATTTTACA
1 AA-CAAGGGTATTTTGGTAATTTTACA
* *** *
96970237 AGTCAAGGGTATTTCAATAATTATACA
1 A-ACAAGGGTATTTTGGTAATTTTACA
*** * * *
96970264 AGTTGAGGGTATTTTAGTAATTTCATA
1 A-ACAAGGGTATTTTGGTAATTTTACA
*
96970291 AATCAGGGGTATTTTGGTAATTTTACA
1 AA-CAAGGGTATTTTGGTAATTTTACA
* *
96970318 AACTAGGGGTATTTTGATAATTTTACA
1 AAC-AAGGGTATTTTGGTAATTTTACA
*
96970345 AACCAGGGGTATTTTGGTAATTTTACA
1 AA-CAAGGGTATTTTGGTAATTTTACA
* *
96970372 AACCAGGGGTATTTTGGTAATTTTATA
1 AA-CAAGGGTATTTTGGTAATTTTACA
* *
96970399 AACAAAGGTTATTTTAGTAATTTTACA
1 AAC-AAGGGTATTTTGGTAATTTTACA
* *
96970426 AACCAGGGGTATTTTGGTAATTTTATA
1 AA-CAAGGGTATTTTGGTAATTTTACA
* *
96970453 AACAAAGGTTATTTTAGTAATTTTACA
1 AAC-AAGGGTATTTTGGTAATTTTACA
* **
96970480 AACCAGGGGTATTTTGGTAATTTTGTA
1 AA-CAAGGGTATTTTGGTAATTTTACA
*
96970507 TACCAAGGGTATTTTGGTAATTTTACA
1 -AACAAGGGTATTTTGGTAATTTTACA
* * *
96970534 AACCAGAGGTATTTTGGTGATTTTATA
1 AACAAG-GGTATTTTGGTAATTTTACA
*
96970561 AACCAAGGGTATTTTAGTAATTTTACA
1 AA-CAAGGGTATTTTGGTAATTTTACA
* *
96970588 AATCAGGGGTACTTTGGTA
1 AA-CAAGGGTATTTTGGTA
96970607 CTTTGGTAAA
Statistics
Matches: 343, Mismatches: 69, Indels: 23
0.79 0.16 0.05
Matches are distributed among these distances:
26 9 0.03
27 327 0.95
28 7 0.02
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (26 bp):
AACAAGGGTATTTTGGTAATTTTACA
Found at i:96970617 original size:54 final size:54
Alignment explanation
Indices: 96970162--96970606 Score: 496
Period size: 54 Copynumber: 8.2 Consensus size: 54
96970152 TATCCAACAA
* * * * *** * * * *
96970162 GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCAA
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* * ** * * * ***
96970216 GGGTACTTTGGTAATTTTACAAGTCAAGGGTATTTCAATAATTATAC-AAGTTG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* * * * * *
96970269 AGGGTATTTTAGTAATTTCATAAATCAGGGGTATTTTGGTAATTTTACAAACTAG
1 -GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* * * *
96970324 GGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
96970378 GGGTATTTTGGTAATTTTATAAACAAAGGTTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
96970432 GGGTATTTTGGTAATTTTATAAACAAAGGTTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* * *
96970486 GGGTATTTTGGTAATTTTGTATACCAAGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* * *
96970540 AGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAATCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
*
96970594 GGGTACTTTGGTA
1 GGGTATTTTGGTA
96970607 CTTTGGTAAA
Statistics
Matches: 334, Mismatches: 55, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
53 2 0.01
54 328 0.98
55 4 0.01
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:96977604 original size:24 final size:24
Alignment explanation
Indices: 96977559--96977604 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
96977549 GATAATGATT
*
96977559 TGTTATATTTTTACTATTATTATA
1 TGTTATATTTTTACTATCATTATA
*
96977583 TGTTTTATTTTTA-TAGTCATTA
1 TGTTATATTTTTACTA-TCATTA
96977605 AAATTAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 2 0.11
24 17 0.89
ACGTcount: A:0.26, C:0.04, G:0.07, T:0.63
Consensus pattern (24 bp):
TGTTATATTTTTACTATCATTATA
Found at i:96979486 original size:28 final size:28
Alignment explanation
Indices: 96979439--96979535 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
96979429 ATTTAAACCC
* *
96979439 TAGGGGT-ATATT-GGTAATTTTTCTATT
1 TAGGGGTAAT-TTCGGTAATTTTGCTCTT
96979466 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
**
96979494 TAGGGGTAATTTTAGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
96979522 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
96979536 TGATCTACGC
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
27 9 0.15
28 53 0.85
ACGTcount: A:0.21, C:0.07, G:0.25, T:0.47
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:96980186 original size:27 final size:27
Alignment explanation
Indices: 96980156--96980217 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
96980146 GGGCAAAATG
96980156 GTAATTTTACCCTACAAGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATTTCA
* *
96980183 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCTACAAGGGTATTTCA
96980210 GTAATTTT
1 GTAATTTT
96980218 TCAAACCATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (27 bp):
GTAATTTTACCCTACAAGGGTATTTCA
Found at i:96980231 original size:54 final size:54
Alignment explanation
Indices: 96980173--96980323 Score: 160
Period size: 54 Copynumber: 2.8 Consensus size: 54
96980163 TACCCTACAA
** * * *
96980173 GGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAACCAT
1 GGGTATTTCAGTAATTTTA-CAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** *
96980227 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** * * * *
96980281 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATT
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATT
96980324 CTGTAAATTG
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 2 0.02
54 83 0.98
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:96980289 original size:81 final size:81
Alignment explanation
Indices: 96980171--96980323 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
96980161 TTTACCCTAC
** *
96980171 AAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTT-TCAAACCATGGGTATTT
1 AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTAT-AAACCAAGGGTATTT
96980235 TGGTAATTTTATAAACA
65 TGGTAATTTTATAAACA
* * *
96980252 AAGGGTATTTTAGTAATTTTA-CAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTT
1 AAGGGTATTTCAGTAATTTTACCAAA-CAGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTT
96980316 TGGTAATT
65 TGGTAATT
96980324 CTGTAAATTG
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTTT
GGTAATTTTATAAACA
Found at i:96980330 original size:27 final size:27
Alignment explanation
Indices: 96980200--96980323 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
96980190 TACCCTACAG
* *
96980200 GGGTATTTTAGTAATTTT-TCAAACCAT
1 GGGTATTTTGGTAATTTTAT-AAACCAA
*
96980227 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
96980254 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
96980281 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
96980308 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
96980324 CTGTAAATTG
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:96980337 original size:27 final size:27
Alignment explanation
Indices: 96980307--96980377 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
96980297 TTATAAACCA
* *
96980307 AGGGTATTTTGGTAATTCTGTAAATTG
1 AGGGTAATTTGGTAATTCTGTAAATCG
***
96980334 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAATTTGGTAATTCTGTAAATCG
*
96980361 -GGAGTACTTTGGTAATT
1 AGG-GTAATTTGGTAATT
96980378 TTACAAGTCG
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTCTGTAAATCG
Found at i:96980339 original size:54 final size:54
Alignment explanation
Indices: 96980200--96980323 Score: 203
Period size: 54 Copynumber: 2.3 Consensus size: 54
96980190 TACCCTACAG
* *
96980200 GGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
* *
96980254 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
*
96980308 GGGTATTTTGGTAATT
1 GGGTATTTTAGTAATT
96980324 CTGTAAATTG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
Found at i:96980349 original size:81 final size:81
Alignment explanation
Indices: 96980197--96980350 Score: 175
Period size: 81 Copynumber: 1.9 Consensus size: 81
96980187 TTTTACCCTA
* * ***
96980197 CAGGGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAAGGGTATTT
1 CAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAAA
*
96980262 TAGTAATTTTACAAAC
66 CAGTAATTTTACAAAC
* * * ***
96980278 CAGGGGTATTTTGGTGATTTTAT-AAACCAAGGGTATTTTGGTAATTCTGTAAATTGAGGGTAAA
1 CAGGGGTATTTTAGTAATTTT-TCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAA
*
96980342 ACGGTAATT
65 ACAGTAATT
96980351 CTGTAAATCG
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
81 58 0.98
82 1 0.02
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (81 bp):
CAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAAA
CAGTAATTTTACAAAC
Found at i:96984953 original size:37 final size:37
Alignment explanation
Indices: 96984897--96984972 Score: 125
Period size: 37 Copynumber: 2.1 Consensus size: 37
96984887 ATGCGTAGAG
* *
96984897 TCCATTTAACAAAATTTCCAAAACTTGCCTGTAGGTA
1 TCCATTTAAAAAAAATTCCAAAACTTGCCTGTAGGTA
*
96984934 TCCATTTAAAAAAAATTCCAAAACTTGTCTGTAGGTA
1 TCCATTTAAAAAAAATTCCAAAACTTGCCTGTAGGTA
96984971 TC
1 TC
96984973 GATACTGACA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.33
Consensus pattern (37 bp):
TCCATTTAAAAAAAATTCCAAAACTTGCCTGTAGGTA
Found at i:96989543 original size:55 final size:53
Alignment explanation
Indices: 96989456--96989710 Score: 252
Period size: 55 Copynumber: 4.8 Consensus size: 53
96989446 ATTAGGGTTT
* *
96989456 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTCAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGT-AAGTTTCTAAGGC
* * *
96989511 AAGGATACCATGTAAGACCATGTTAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * * * *
96989566 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCGTTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* * *
96989619 AAGGATACCATGTAAGACCAGGTCGAGACATGGCAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCTAAGGC
* * * * *
96989668 AAGGATACCACGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
96989711 GTACCTGTGT
Statistics
Matches: 167, Mismatches: 27, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
49 37 0.22
52 7 0.04
53 40 0.24
54 9 0.05
55 70 0.42
56 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:96989662 original size:108 final size:110
Alignment explanation
Indices: 96989463--96989663 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
96989453 TTTAAGGATA
*
96989463 CCATGTAAGACCATGTCAAGGCATGGCAATTGGTCAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTCAGGTTTCTAAGGCAAGGATACCATGTAAGA
* * *
96989528 CCATGTTAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCAGGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
96989573 CCATGTAAGACCATGCCAAGGCATGGC-GTTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTCAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
96989635 ACCAGGTCGAGACATGGCAATGGTAAGTT
65 ACCAGGTCAAGACATGGCAATGATAAGTT
96989664 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 6 0.07
110 26 0.32
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTCAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCAGGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:96989923 original size:16 final size:16
Alignment explanation
Indices: 96989902--96989932 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
96989892 ATAAATTTGA
96989902 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
96989918 TTAAGTAAGTTAGTA
1 TTAAGTAAGTAAGTA
96989933 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:96994551 original size:9 final size:9
Alignment explanation
Indices: 96994537--96994561 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
96994527 TATTTGGTCT
96994537 AATAATTTA
1 AATAATTTA
96994546 AATAATTTA
1 AATAATTTA
96994555 AATAATT
1 AATAATT
96994562 GATTACTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
AATAATTTA
Found at i:97010357 original size:19 final size:19
Alignment explanation
Indices: 97010333--97010371 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
97010323 CGGGTAAAGG
*
97010333 ACACAGGCGTATCCGAAGC
1 ACACAGGCGTATCCCAAGC
*
97010352 ACACAGGCGTGTCCCAAGC
1 ACACAGGCGTATCCCAAGC
97010371 A
1 A
97010372 TACAAGCATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.31, C:0.33, G:0.26, T:0.10
Consensus pattern (19 bp):
ACACAGGCGTATCCCAAGC
Found at i:97013468 original size:24 final size:24
Alignment explanation
Indices: 97013438--97013656 Score: 366
Period size: 24 Copynumber: 9.1 Consensus size: 24
97013428 GAATGTGACT
* *
97013438 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
97013462 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
97013486 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
97013510 ATAGTAGATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
97013534 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
97013558 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
97013582 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
97013606 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
97013630 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
97013654 ATA
1 ATA
97013657 TGGTCTTTGC
Statistics
Matches: 189, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 189 1.00
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:97020972 original size:42 final size:41
Alignment explanation
Indices: 97020904--97021018 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 41
97020894 CATTGACTTA
*
97020904 TGATTTACGTGTAAGACCATGTTGGGACATCAGCATC-ATATT
1 TGATTT-CGTGTAAGACCCTGTTGGGACAT-AGCATCGATATT
* *
97020946 TGATTTCGTGTAAGACCCTGTCTGGGATAATGGCATCGATATT
1 TGATTTCGTGTAAGACCCTGT-TGGGA-CATAGCATCGATATT
* *
97020989 TGATTACATGTAAGACCAC-GTTTGGGACAT
1 TGATTTCGTGTAAGACC-CTG-TTGGGACAT
97021019 TTGCGTTGTA
Statistics
Matches: 62, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
41 14 0.23
42 18 0.29
43 28 0.45
44 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCCTGTTGGGACATAGCATCGATATT
Found at i:97029580 original size:25 final size:25
Alignment explanation
Indices: 97029530--97029580 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
97029520 CCCTTATAAT
** *
97029530 GTGAAAATGACCATTTTGCCCCTAG
1 GTGAAAATGACCATGATACCCCTAG
*
97029555 GTGAAAATGACCATGATACCCTTAG
1 GTGAAAATGACCATGATACCCCTAG
97029580 G
1 G
97029581 GATATGCTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (25 bp):
GTGAAAATGACCATGATACCCCTAG
Found at i:97029627 original size:10 final size:10
Alignment explanation
Indices: 97029612--97029651 Score: 71
Period size: 10 Copynumber: 3.9 Consensus size: 10
97029602 ATGATTTGTA
97029612 CATGATATGC
1 CATGATATGC
97029622 CATGATATGC
1 CATGATATGC
97029632 ACATGATATGC
1 -CATGATATGC
97029643 CATGATATG
1 CATGATATG
97029652 TTCATATATG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 19 0.66
11 10 0.34
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (10 bp):
CATGATATGC
Found at i:97029635 original size:21 final size:21
Alignment explanation
Indices: 97029602--97029651 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
97029592 ATTAAGATGT
* *
97029602 ATGATTTGTACATGATATGCC
1 ATGATATGCACATGATATGCC
97029623 ATGATATGCACATGATATGCC
1 ATGATATGCACATGATATGCC
97029644 ATGATATG
1 ATGATATG
97029652 TTCATATATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (21 bp):
ATGATATGCACATGATATGCC
Found at i:97035283 original size:40 final size:41
Alignment explanation
Indices: 97035238--97035404 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
97035228 CGGAATATAA
*
97035238 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
97035278 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
97035318 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
97035358 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
97035397 CCGGATAT
1 CCGGATAT
97035405 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:97043125 original size:40 final size:40
Alignment explanation
Indices: 97043080--97043245 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
97043070 CGGAATATAA
97043080 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
97043120 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
97043160 CCGGATATAGCCACTAGCACAATTGCCTTC-GGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
97043199 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
97043238 CCGGATAT
1 CCGGATAT
97043246 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 45 0.43
40 60 0.57
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:97053829 original size:29 final size:28
Alignment explanation
Indices: 97053734--97053847 Score: 115
Period size: 28 Copynumber: 4.0 Consensus size: 28
97053724 TACCCGTATC
* * *
97053734 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCAAATCACATTCATA
*
97053762 TGGCCCATTAGGCCCAAAT-AC-TTGTATA
1 TGGCCCATTAGG-CCAAATCACATT-CATA
*
97053790 TGGCCCATTAGGTCCAAATCACATTTATA
1 TGGCCCATTAGG-CCAAATCACATTCATA
* * *
97053819 TGGCCCGTTAGGCCTAGTCACATTCATA
1 TGGCCCATTAGGCCAAATCACATTCATA
97053847 T
1 T
97053848 TCATGCACAC
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
27 2 0.03
28 47 0.64
29 22 0.30
30 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (28 bp):
TGGCCCATTAGGCCAAATCACATTCATA
Found at i:97054054 original size:24 final size:24
Alignment explanation
Indices: 97054026--97054071 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
97054016 CCAACTTTTG
*
97054026 ACTTTTCAGCATTTTGGCTTTTCA
1 ACTTTTCAGCATTTCGGCTTTTCA
* *
97054050 ACTTTTCGGCGTTTCGGCTTTT
1 ACTTTTCAGCATTTCGGCTTTT
97054072 GCCGATTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.11, C:0.22, G:0.17, T:0.50
Consensus pattern (24 bp):
ACTTTTCAGCATTTCGGCTTTTCA
Found at i:97055652 original size:24 final size:24
Alignment explanation
Indices: 97055625--97055694 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 24
97055615 CATACACAAC
97055625 ATAACTTAAATTATCTCATTCTCA
1 ATAACTTAAATTATCTCATTCTCA
* * * *
97055649 ATAA-TCAAAATA-CACA---AC-
1 ATAACTTAAATTATCTCATTCTCA
97055667 ATAACTTAAATTATCTCATTCTCA
1 ATAACTTAAATTATCTCATTCTCA
97055691 ATAA
1 ATAA
97055695 TCATTGTAGC
Statistics
Matches: 32, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
18 4 0.12
19 7 0.22
20 3 0.09
22 3 0.09
23 7 0.22
24 8 0.25
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (24 bp):
ATAACTTAAATTATCTCATTCTCA
Found at i:97055675 original size:42 final size:42
Alignment explanation
Indices: 97055616--97055697 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
97055606 TTTCATACAC
97055616 ATACACAACATAACTTAAATTATCTCATTCTCAATAATCAAA
1 ATACACAACATAACTTAAATTATCTCATTCTCAATAATCAAA
97055658 ATACACAACATAACTTAAATTATCTCATTCTCAATAATCA
1 ATACACAACATAACTTAAATTATCTCATTCTCAATAATCA
97055698 TTGTAGCCAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (42 bp):
ATACACAACATAACTTAAATTATCTCATTCTCAATAATCAAA
Found at i:97057672 original size:29 final size:29
Alignment explanation
Indices: 97057640--97057771 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
97057630 ATAGTGAATC
97057640 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
97057669 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
97057699 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
97057728 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
97057757 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97057772 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:97057781 original size:59 final size:59
Alignment explanation
Indices: 97057640--97057771 Score: 239
Period size: 59 Copynumber: 2.3 Consensus size: 59
97057630 ATAGTGAATC
97057640 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
* *
97057699 CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
97057757 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97057772 GTACAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 24 0.34
59 47 0.66
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:97064397 original size:24 final size:24
Alignment explanation
Indices: 97064370--97064439 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 24
97064360 CATACACAAC
97064370 ATAACTTAAATTATCTCATTCTCA
1 ATAACTTAAATTATCTCATTCTCA
* * * *
97064394 ATAA-TCAAAATA-CACA---AC-
1 ATAACTTAAATTATCTCATTCTCA
97064412 ATAACTTAAATTATCTCATTCTCA
1 ATAACTTAAATTATCTCATTCTCA
97064436 ATAA
1 ATAA
97064440 TCATTGTAGC
Statistics
Matches: 32, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
18 4 0.12
19 7 0.22
20 3 0.09
22 3 0.09
23 7 0.22
24 8 0.25
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (24 bp):
ATAACTTAAATTATCTCATTCTCA
Found at i:97064420 original size:42 final size:42
Alignment explanation
Indices: 97064361--97064442 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
97064351 TTTCATACAC
97064361 ATACACAACATAACTTAAATTATCTCATTCTCAATAATCAAA
1 ATACACAACATAACTTAAATTATCTCATTCTCAATAATCAAA
97064403 ATACACAACATAACTTAAATTATCTCATTCTCAATAATCA
1 ATACACAACATAACTTAAATTATCTCATTCTCAATAATCA
97064443 TTGTAGCCAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (42 bp):
ATACACAACATAACTTAAATTATCTCATTCTCAATAATCAAA
Found at i:97066420 original size:29 final size:29
Alignment explanation
Indices: 97066388--97066519 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
97066378 ATAGTGAATC
97066388 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
97066417 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
97066447 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
97066476 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
97066505 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97066520 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:97066529 original size:59 final size:59
Alignment explanation
Indices: 97066388--97066519 Score: 239
Period size: 59 Copynumber: 2.3 Consensus size: 59
97066378 ATAGTGAATC
97066388 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
* *
97066447 CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
97066505 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97066520 GTACAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 24 0.34
59 47 0.66
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:97074200 original size:30 final size:30
Alignment explanation
Indices: 97074142--97074200 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
97074132 TTTTAGGGCC
* **
97074142 TAGGGGCAAAATCATAATTTTGTGAAAGTT
1 TAGGGGCAAAATCATAAATTTGCCAAAGTT
97074172 TAGGGGCAAAA-CTATAAATTTGCCAAAGT
1 TAGGGGCAAAATC-ATAAATTTGCCAAAGT
97074201 ATGTTTGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATCATAAATTTGCCAAAGTT
Found at i:97074782 original size:50 final size:50
Alignment explanation
Indices: 97074693--97074932 Score: 211
Period size: 50 Copynumber: 4.8 Consensus size: 50
97074683 GACCATGGCG
* ** * * *
97074693 ATATGAGAGCCAGTGTAAGACCATGTCTACTATAAGGCATCGGCACCGGT
1 ATATGCGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACCGAT
* *
97074743 ATATGCGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCAAT
1 ATATGCGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACCGAT
* * * * ** **
97074793 ATGTGCAAG-CTGATGTAAGACCATGT-TTGGACCATGGCATCAACATTG-T
1 ATATGCGAGCCAG-TGTAAGACCATGTCTAGGA-CATGGCATCGGCACCGAT
* * *
97074842 -TATGTC-AGCTAGTGTAAGACCATGTCTGGGACACGGCATCGGCACCGAT
1 ATATG-CGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACCGAT
* ** *
97074891 ATATGAGAGCTGGTGTAAGACCATATCTAGGACATGGCATCG
1 ATATGCGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
97074933 ACATTTTATC
Statistics
Matches: 151, Mismatches: 31, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
48 29 0.19
49 14 0.09
50 108 0.72
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.23
Consensus pattern (50 bp):
ATATGCGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACCGAT
Found at i:97074870 original size:98 final size:97
Alignment explanation
Indices: 97074754--97074941 Score: 272
Period size: 98 Copynumber: 1.9 Consensus size: 97
97074744 TATGCGAGCC
* * *
97074754 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCAATATGTGCA-AGCTGATGTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACACGGCATCGGCACCAATATATG-AGAGCTGATGTAAGACCATA
*
97074818 T-TTGGACCATGGCATCAACATTGTTATGTCAGCT
65 TCTAGGA-CATGGCATCAACATT-TTATGTCAGCT
* *
97074852 AGTGTAAGACCATGTCTGGGACACGGCATCGGCACCGATATATGAGAGCTGGTGTAAGACCATAT
1 AGTGTAAGACCATGTCTGGGACACGGCATCGGCACCAATATATGAGAGCTGATGTAAGACCATAT
*
97074917 CTAGGACATGGCATCGACATTTTAT
66 CTAGGACATGGCATCAACATTTTAT
97074942 CCTTTTGTAT
Statistics
Matches: 81, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
97 5 0.06
98 72 0.89
99 4 0.05
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (97 bp):
AGTGTAAGACCATGTCTGGGACACGGCATCGGCACCAATATATGAGAGCTGATGTAAGACCATAT
CTAGGACATGGCATCAACATTTTATGTCAGCT
Found at i:97079169 original size:50 final size:51
Alignment explanation
Indices: 97079038--97079332 Score: 247
Period size: 50 Copynumber: 5.8 Consensus size: 51
97079028 CTTGTAACTG
* * * * * ***
97079038 AAGCTATCTGGTACGCATAATAGCCTACACTTAGTACTACACATGCGACC-
1 AAGCCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACATGACCT
* * * *
97079088 AA-CAATCCGGTCCACATAGTAGCCTGCACTTAGTACTACACACATGACCT
1 AAGCCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACATGACCT
** * * * *
97079138 AA-CCATCTGATATTCGTAGTAGCCTGCACTTAGTACTACACACGTGATCG
1 AAGCCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACATGACCT
*** * * * ***
97079188 AAGTTGTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 AAGCCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACATGACCT
* * * *
97079239 AA-CTATCTGTTACACGTAGTAGCCTACACTTAGTACTACACACATGACCT
1 AAGCCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACATGACCT
* * *
97079289 AAAGCCATCTTAAACACATAGTAGCCTGCACATAGTACTACACA
1 -AAGCCATCTGATACACATAGTAGCCTGCACTTAGTACTACACA
97079333 TGTGTTCTCA
Statistics
Matches: 193, Mismatches: 48, Indels: 6
0.78 0.19 0.02
Matches are distributed among these distances:
49 38 0.20
50 82 0.42
51 40 0.21
52 33 0.17
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.25
Consensus pattern (51 bp):
AAGCCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACATGACCT
Found at i:97086023 original size:40 final size:40
Alignment explanation
Indices: 97085968--97086177 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
97085958 AACATTGGAA
97085968 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
97086008 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
97086048 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
97086088 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
97086127 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
97086168 CTATATCCGG
1 ATATATCCGG
97086178 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:97094157 original size:40 final size:40
Alignment explanation
Indices: 97094102--97094311 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
97094092 GAACATTGAA
97094102 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
97094142 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
97094182 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
97094222 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
97094261 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
97094302 CTATATCCGG
1 ATATATCCGG
97094312 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:97098024 original size:46 final size:46
Alignment explanation
Indices: 97097974--97098146 Score: 169
Period size: 46 Copynumber: 3.7 Consensus size: 46
97097964 TGGTTGAGCA
*
97097974 TCCGAACTCGTTGAGTTTAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
97098020 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
97098065 CATCCGAACTCGTTGAGTTGAGTCAC-AGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTC-CGAGTTCACTTATGGATGCGAATG
* *
97098113 -CCTGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
97098147 GGGGAGGGTT
Statistics
Matches: 103, Mismatches: 12, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 6 0.06
46 55 0.53
47 27 0.26
48 4 0.04
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:97098130 original size:93 final size:93
Alignment explanation
Indices: 97097971--97098141 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
97097961 GGATGGTTGA
* * *
97097971 GCATCCGAACTCGTTGAGTTTAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
97098036 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
97098064 GCATCCGAACTCGTTGAGTTGAGTCAC-AGTTCACTTATGGATGCGAACG-CCTGAGCTCATTGA
1 GCATCCGAACTCGTTGAGTTGAGTC-CGAGTTCACTTATGGATGCGAACGTCC-GAACTCATTGA
97098127 GTTGAGTCCGAGTTC
64 GTTGAGTCCGAGTTC
97098142 ACTTAGGGGA
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
92 2 0.03
93 69 0.96
94 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:97108578 original size:24 final size:24
Alignment explanation
Indices: 97108527--97108715 Score: 278
Period size: 24 Copynumber: 8.0 Consensus size: 24
97108517 GCTTTATCAT
*
97108527 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
97108552 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
97108576 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
**
97108599 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
*
97108623 ATAACTGGGGTATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
97108646 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
97108670 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
97108693 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
97108716 GCACTTCCTC
Statistics
Matches: 149, Mismatches: 11, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
23 65 0.44
24 72 0.48
25 12 0.08
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:97108602 original size:23 final size:23
Alignment explanation
Indices: 97108548--97108714 Score: 271
Period size: 23 Copynumber: 7.1 Consensus size: 23
97108538 CCTAGCCTCT
*
97108548 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
97108571 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
97108595 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
97108618 TTTCGATAACTGGGGTATAAGCCC
1 TTT-AATAACTGGGGCATAAGCCC
97108642 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
97108665 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
97108689 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
97108712 TTT
1 TTT
97108715 TGCACTTCCT
Statistics
Matches: 134, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
23 69 0.51
24 65 0.49
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:97108602 original size:47 final size:47
Alignment explanation
Indices: 97108548--97108716 Score: 302
Period size: 47 Copynumber: 3.6 Consensus size: 47
97108538 CCTAGCCTCT
* *
97108548 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
* *
97108595 TTTAATAACTGGGGCATAAGCCCTTTCGATAACTGGGGTATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
97108642 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
97108689 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
97108717 CACTTCCTCC
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 116 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:97108856 original size:25 final size:25
Alignment explanation
Indices: 97108828--97108875 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
97108818 ATATATAAAC
* * *
97108828 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
97108853 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
97108876 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:97118401 original size:22 final size:19
Alignment explanation
Indices: 97118368--97118414 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
97118358 AAGGATGATA
97118368 ATTATTAATATATAATTATATCT
1 ATTA-TAATATAT-ATTA-AT-T
97118391 ATTATAATATATATTAATT
1 ATTATAATATATATTAATT
97118410 ATTAT
1 ATTAT
97118415 CAACTTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 4 0.17
22 8 0.33
23 4 0.17
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTATAATATATATTAATT
Found at i:97118410 original size:16 final size:15
Alignment explanation
Indices: 97118370--97118411 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
97118360 GGATGATAAT
97118370 TATTAATATATAATTA
1 TATTAAT-TATAATTA
97118386 TATCT-ATTATAATATA
1 TAT-TAATTATAAT-TA
97118402 TATTAATTAT
1 TATTAATTAT
97118412 TATCAACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.30
16 15 0.65
17 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:97120382 original size:19 final size:20
Alignment explanation
Indices: 97120358--97120395 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
97120348 GGTACCACCA
97120358 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
97120377 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
97120396 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:97120740 original size:93 final size:93
Alignment explanation
Indices: 97120625--97120795 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
97120615 GCCCCTAAGT
* *
97120625 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
97120690 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
97120718 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
97120783 CGAGTTCGGATGC
66 CGAGTTCGGATGC
97120796 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:97120792 original size:46 final size:46
Alignment explanation
Indices: 97120620--97120792 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
97120610 AACTCGCCCC
* * * *
97120620 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
97120666 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
97120714 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
97120759 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
97120793 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:97121248 original size:29 final size:29
Alignment explanation
Indices: 97121215--97121270 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
97121205 ATTTAATACG
97121215 AACTTTAAAAAAATTACACTTTTGCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCTA
*** *
97121244 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTAAAAAAATTACACTTTTGCCC
97121271 CTAGGCTCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.38
Consensus pattern (29 bp):
AACTTTAAAAAAATTACACTTTTGCCCTA
Found at i:97122490 original size:2 final size:2
Alignment explanation
Indices: 97122485--97122509 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
97122475 CATATATAGG
97122485 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
97122510 GCCTTATGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:97123747 original size:48 final size:48
Alignment explanation
Indices: 97123676--97123917 Score: 349
Period size: 48 Copynumber: 5.0 Consensus size: 48
97123666 AGATAAATAT
* * *
97123676 ATATATATGTGTGGTAAATCCGAATGGCTAATGTGAAAAATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* **
97123724 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
** *
97123772 ATATATATATGTGGTAAAGCCGAATGGCTAACATGAAATACGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
97123820 ATATATATATGCGGTAAATCCGAATGGATAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
97123868 ATATGTATATGTGGTAAAGCCGTATGGTTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
97123916 AT
1 AT
97123918 GTGTATATAT
Statistics
Matches: 175, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 175 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:97125944 original size:43 final size:43
Alignment explanation
Indices: 97125825--97126170 Score: 579
Period size: 43 Copynumber: 8.1 Consensus size: 43
97125815 TGAAACTCGA
* *
97125825 TGATATATATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGG
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
97125868 TGATATGTATTC-GGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
*
97125910 TGATATGTATTCGGGTCTTCGTGCCTAGCAGGCTTCGTGCCGG
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
*
97125953 TGATATGTATTCGGGCCTTCGTGCCTAGAAGGCTTCGTGCCGG
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
97125996 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
*
97126039 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGG
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
* *
97126082 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCAG
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
* * **
97126125 TGATATGTATTTGGG-TTTCGTGCCTAGCAGGCTTAATGCCGG
1 TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
97126167 TGAT
1 TGAT
97126171 TCGACCAAGG
Statistics
Matches: 290, Mismatches: 12, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
42 69 0.24
43 221 0.76
ACGTcount: A:0.14, C:0.23, G:0.31, T:0.32
Consensus pattern (43 bp):
TGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
Found at i:97126392 original size:58 final size:57
Alignment explanation
Indices: 97126302--97126435 Score: 187
Period size: 58 Copynumber: 2.3 Consensus size: 57
97126292 ATGAATATGG
*
97126302 GCATTATGTGTGCGAGATCAGTAATTGAGGCACTGTATATGCGAATTCCTTTAACCGA
1 GCATTATGTGTGCGAGATCAGTAATTGAGGCACTGTATATGCGAATT-CTTCAACCGA
* ** * * *
97126360 GCATTATGTGTGCAAGATTGGTAATTGAGGCACTGTGTGTGCGAGTTCTTCAACCGA
1 GCATTATGTGTGCGAGATCAGTAATTGAGGCACTGTATATGCGAATTCTTCAACCGA
*
97126417 GCACTATGTGTGCGAGATC
1 GCATTATGTGTGCGAGATC
97126436 GGTCAGTGGG
Statistics
Matches: 66, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
57 25 0.38
58 41 0.62
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (57 bp):
GCATTATGTGTGCGAGATCAGTAATTGAGGCACTGTATATGCGAATTCTTCAACCGA
Found at i:97129900 original size:48 final size:48
Alignment explanation
Indices: 97129829--97130070 Score: 376
Period size: 48 Copynumber: 5.0 Consensus size: 48
97129819 CAAGATAAAT
* * *
97129829 ATATATATGTGTGGTAAATCCGAATGGCTAATGTGAAAAATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* **
97129877 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
**
97129925 ATATATATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
97129973 ATATATATATGCGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
97130021 ATATGTATATGTGGTAAAGCCGTATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
97130069 AT
1 AT
97130071 GTGTATATAT
Statistics
Matches: 179, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 179 1.00
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.31
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:97137971 original size:19 final size:20
Alignment explanation
Indices: 97137947--97137984 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
97137937 GGTACCACCA
97137947 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
97137966 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
97137985 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:97138325 original size:47 final size:49
Alignment explanation
Indices: 97138206--97138380 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 49
97138196 AACCCGCCCC
* *
97138206 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-GTTCACATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACATCCA
**
97138252 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACATCCA
* * *
97138300 TCA-CGAACTCGGACTCAACTCAACGAGTTC-GA---CATTTGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
*
97138344 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
97138381 TCAACCATCC
Statistics
Matches: 109, Mismatches: 8, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
42 6 0.06
43 2 0.02
44 2 0.02
45 26 0.24
46 35 0.32
47 26 0.24
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (49 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
Found at i:97138369 original size:92 final size:93
Alignment explanation
Indices: 97138211--97138380 Score: 279
Period size: 92 Copynumber: 1.8 Consensus size: 93
97138201 GCCCCTAAGT
* *
97138211 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
97138276 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* ** *
97138304 GAACTCGGACTCAACTCAACGAGTTC-GACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
97138368 CGAGTTCGGATGC
66 CGAGTTCGGATGC
97138381 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 46 0.65
93 25 0.35
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:97146318 original size:43 final size:43
Alignment explanation
Indices: 97146206--97146369 Score: 131
Period size: 43 Copynumber: 3.8 Consensus size: 43
97146196 CAATCCCAAC
* *
97146206 GTCCTAGACGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCTAGACGTGGTCTTACATGAAATCAAATATCGATACCACT
* * * *
97146249 ATCCCAGACATGGTCTTACATGAAATCAAATCT-GATACCGA-T
1 GTCCTAGACGTGGTCTTACATGAAATCAAATATCGATACC-ACT
* *
97146291 GTCCTAGACGTGGTCTTAGACAT-AAATCATAA-GTCGATGCCAAC-
1 GTCCTAGACGTGGTCTT--ACATGAAATCA-AATATCGATACC-ACT
* * * * *
97146335 GTCCCAGATGTGGTCTTACACGAAAACACATATCG
1 GTCCTAGACGTGGTCTTACATGAAATCAAATATCG
97146370 GATCCTTTGC
Statistics
Matches: 95, Mismatches: 18, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
42 24 0.25
43 44 0.46
44 27 0.28
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (43 bp):
GTCCTAGACGTGGTCTTACATGAAATCAAATATCGATACCACT
Found at i:97153926 original size:43 final size:42
Alignment explanation
Indices: 97153812--97153963 Score: 123
Period size: 43 Copynumber: 3.5 Consensus size: 42
97153802 TACAATACCA
* *
97153812 ATGTCTCAGACGTGGTCTTACATC-T-AATCAAATATCGATGCC
1 ATGTCCCAGACATGGTCTTACA-CATAAATCAAATA-CGATGCC
* * * *
97153854 ACTCTCCTAAACAGGGTCTTACACA-AAATCAAATACGATGCC
1 A-TGTCCCAGACATGGTCTTACACATAAATCAAATACGATGCC
*
97153896 GATGTCCCAGACATGGTCTTACACATAAATCATAAGT-CGATCCC
1 -ATGTCCCAGACATGGTCTTACACATAAATCA-AA-TACGATGCC
* **
97153940 AACGTCCCAGATGTGGTCTTACAC
1 -ATGTCCCAGACATGGTCTTACAC
97153964 GAAAAAACAT
Statistics
Matches: 88, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
42 28 0.32
43 31 0.35
44 28 0.32
45 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (42 bp):
ATGTCCCAGACATGGTCTTACACATAAATCAAATACGATGCC
Found at i:97153957 original size:44 final size:42
Alignment explanation
Indices: 97153868--97153968 Score: 114
Period size: 44 Copynumber: 2.3 Consensus size: 42
97153858 TCCTAAACAG
* * *
97153868 GGTCTTACACAAAATCAAATACGATGCCGATGTCCCAGACAT
1 GGTCTTACACAAAATCAAATACGATCCCAACGTCCCAGACAT
**
97153910 GGTCTTACACATAAATCATAAGT-CGATCCCAACGTCCCAGATGT
1 GGTCTTACACA-AAATCA-AA-TACGATCCCAACGTCCCAGACAT
97153954 GGTCTTACACGAAAA
1 GGTCTTACAC-AAAA
97153969 AACATATCGG
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
42 11 0.22
43 6 0.12
44 31 0.62
45 2 0.04
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.23
Consensus pattern (42 bp):
GGTCTTACACAAAATCAAATACGATCCCAACGTCCCAGACAT
Found at i:97158811 original size:43 final size:42
Alignment explanation
Indices: 97158737--97158863 Score: 123
Period size: 43 Copynumber: 3.0 Consensus size: 42
97158727 GGTTACCGAG
* *
97158737 ATGTGATTACATGTAAGACCATATCC-AGGACACTGGCATTGTT
1 ATGTGATAACATGTAAGACCATA-CCTGGGACA-TGGCATTGTT
** * * * *
97158780 AT-TCGATTTCATGTAAGACCCTGCCTGGGACAGTGGCATCGAT
1 ATGT-GATAACATGTAAGACCATACCTGGGACA-TGGCATTGTT
*
97158823 ATGTGATAACATGTAAGACCATACCTGGGATATGGCATTGT
1 ATGTGATAACATGTAAGACCATACCTGGGACATGGCATTGT
97158864 ACGAGCTTTA
Statistics
Matches: 67, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
42 10 0.15
43 56 0.84
44 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (42 bp):
ATGTGATAACATGTAAGACCATACCTGGGACATGGCATTGTT
Found at i:97172315 original size:17 final size:18
Alignment explanation
Indices: 97172273--97172321 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
97172263 AGTTGAAAAG
97172273 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
97172292 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
97172309 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
97172322 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:97173209 original size:40 final size:40
Alignment explanation
Indices: 97173143--97173309 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
97173133 AAATTGAATG
* * *
97173143 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
97173182 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
97173222 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
97173262 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
97173302 ATATCCGG
1 ATATCCGG
97173310 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:97181558 original size:17 final size:18
Alignment explanation
Indices: 97181516--97181564 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
97181506 AGTTGAAAAG
97181516 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
97181535 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
97181552 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
97181565 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:97182453 original size:40 final size:40
Alignment explanation
Indices: 97182387--97182553 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
97182377 AAATTGAATG
* * *
97182387 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
97182426 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
97182466 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
97182506 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
97182546 ATATCCGG
1 ATATCCGG
97182554 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:97192186 original size:49 final size:49
Alignment explanation
Indices: 97192125--97192380 Score: 373
Period size: 49 Copynumber: 5.3 Consensus size: 49
97192115 ATGTATGAGA
97192125 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
97192174 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
97192223 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
97192270 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * *
97192319 --TATATATGTGAT-AGGGCTGAGTGGCCAACGTGATGGATGTGGAAGTG
1 TATATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTG
97192366 TATA-A-ATGTGATAAG
1 TATATATATGTGATAAG
97192381 TCCCGAAGGC
Statistics
Matches: 192, Mismatches: 9, Indels: 13
0.90 0.04 0.06
Matches are distributed among these distances:
46 4 0.02
47 84 0.44
48 9 0.05
49 95 0.49
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:97192295 original size:47 final size:47
Alignment explanation
Indices: 97192127--97192380 Score: 341
Period size: 47 Copynumber: 5.3 Consensus size: 47
97192117 GTATGAGATA
*
97192127 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
*
97192176 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
97192225 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
* * *
97192272 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
* * * * *
97192319 TATATATGTGAT-AGGGCTGAGTGGCCAACGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGT-GAAGGTG
*
97192366 TATAAATGTGATAAG
1 TATATATGTGATAAG
97192381 TCCCGAAGGC
Statistics
Matches: 192, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
46 4 0.02
47 90 0.47
48 8 0.04
49 90 0.47
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
Found at i:97192303 original size:96 final size:96
Alignment explanation
Indices: 97192125--97192380 Score: 367
Period size: 96 Copynumber: 2.7 Consensus size: 96
97192115 ATGTATGAGA
*
97192125 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTGTATATATGTGATAA
* *
97192190 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
64 GGCCGAATGGCCAATGTGATGAATGTGAAAGTG
97192223 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGATAAGG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGATAAGG
97192288 CCGAATGGCCAATGTGATGAATGTGAAAGTG
66 CCGAATGGCCAATGTGATGAATGTGAAAGTG
* * * * * *
97192319 --TATATATGTGAT-AGGGCTGAGTGGCCAACGTGATGGATGTGGAA-GTGTATAAATGTGATAA
1 TATATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGT-GAAGGTGTATATATGTGATAA
97192380 G
64 G
97192381 TCCCGAAGGC
Statistics
Matches: 147, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
93 5 0.03
94 46 0.31
95 3 0.02
96 47 0.32
97 3 0.02
98 43 0.29
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGATAAGG
CCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:97194556 original size:40 final size:40
Alignment explanation
Indices: 97194490--97194721 Score: 365
Period size: 40 Copynumber: 5.8 Consensus size: 40
97194480 GAGAATTGAG
* * *
97194490 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
97194530 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
97194570 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
97194610 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* * *
97194650 AGTAATGCAACCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
97194690 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCA
97194722 ATCATGCTGG
Statistics
Matches: 179, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 179 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:97198891 original size:49 final size:48
Alignment explanation
Indices: 97198831--97199084 Score: 370
Period size: 47 Copynumber: 5.3 Consensus size: 48
97198821 GTATGAGATA
97198831 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTG
*
97198880 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTG
97198929 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
* *
97198976 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
* * * * * * *
97199023 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
*
97199070 TATAAATGTGATAAG
1 TATATATGTGATAAG
97199085 TCCCGAAGGG
Statistics
Matches: 193, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 99 0.51
48 5 0.03
49 89 0.46
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.29
Consensus pattern (48 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
Found at i:97208228 original size:40 final size:40
Alignment explanation
Indices: 97208137--97208314 Score: 205
Period size: 40 Copynumber: 4.4 Consensus size: 40
97208127 CGAATGGTAT
* * *
97208137 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAAC
* *
97208178 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAAC
* * * *
97208218 CGGGTTAAGTCCTGAAGGCATTCGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAAC
* * * * *
97208258 CGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAAC
97208298 CGGGC-AATGTCCCGAAG
1 CGGGCTAA-GTCCCGAAG
97208315 ACAATCGAGC
Statistics
Matches: 117, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 90 0.77
41 25 0.21
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAAC
Found at i:97213918 original size:14 final size:14
Alignment explanation
Indices: 97213899--97213925 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
97213889 TCTAGAAAAG
97213899 TAAATAATTTTCCA
1 TAAATAATTTTCCA
97213913 TAAATAATTTTCC
1 TAAATAATTTTCC
97213926 GAAAACTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (14 bp):
TAAATAATTTTCCA
Found at i:97215024 original size:14 final size:15
Alignment explanation
Indices: 97215007--97215035 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
97214997 GAGTATGGTA
97215007 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
97215021 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
97215036 TACTAGTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:97221665 original size:7 final size:7
Alignment explanation
Indices: 97221653--97221677 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
97221643 CTTTCATATT
97221653 TTCTTTA
1 TTCTTTA
97221660 TTCTTTA
1 TTCTTTA
97221667 TTCTTTA
1 TTCTTTA
97221674 TTCT
1 TTCT
97221678 CTTCATCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.16, G:0.00, T:0.72
Consensus pattern (7 bp):
TTCTTTA
Found at i:97226549 original size:17 final size:19
Alignment explanation
Indices: 97226515--97226549 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
97226505 CCCCACCTCT
97226515 TTATTTTATAACAAAAATA
1 TTATTTTATAACAAAAATA
97226534 TTATTTTA-AA-AAAAAT
1 TTATTTTATAACAAAAAT
97226550 TGAATTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 2 0.12
19 8 0.50
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (19 bp):
TTATTTTATAACAAAAATA
Found at i:97227022 original size:17 final size:18
Alignment explanation
Indices: 97226986--97227025 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
97226976 TTACTTTTTT
97226986 CCCAAAACTTTTACTCCC
1 CCCAAAACTTTTACTCCC
* *
97227004 CCCAAAATTTTTATTCCC
1 CCCAAAACTTTTACTCCC
97227022 CCCA
1 CCCA
97227026 TCCCACCTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.28, C:0.42, G:0.00, T:0.30
Consensus pattern (18 bp):
CCCAAAACTTTTACTCCC
Found at i:97229154 original size:41 final size:36
Alignment explanation
Indices: 97229072--97229144 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
97229062 ATATGTAATC
97229072 AAAATTAACTTATTTAATCATCTATCTATTCAATTT
1 AAAATTAACTTATTTAATCATCTATCTATTCAATTT
*
97229108 AAAATTAACTTATTTAATCATCTCTCTATTCAATTT
1 AAAATTAACTTATTTAATCATCTATCTATTCAATTT
97229144 A
1 A
97229145 GTCAAAAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.47
Consensus pattern (36 bp):
AAAATTAACTTATTTAATCATCTATCTATTCAATTT
Found at i:97229421 original size:21 final size:20
Alignment explanation
Indices: 97229393--97229431 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
97229383 CAAAACTTGT
97229393 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
97229413 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
97229432 CAAAACACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:97232164 original size:45 final size:43
Alignment explanation
Indices: 97232115--97232203 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 43
97232105 TGTGTCATGC
*
97232115 ATATCACGAACTCAGACCACAACTCAATGAGTTCAGATGTCACAT
1 ATATCACGAACTCAAACCACAACTCAATGAGTTCAG-T-TCACAT
* *
97232160 ATATCATGAACTCAAACCACAACTTAATGAGTTCAGTTCACAT
1 ATATCACGAACTCAAACCACAACTCAATGAGTTCAGTTCACAT
97232203 A
1 A
97232204 GTTCCTAATG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 7 0.17
44 1 0.02
45 33 0.80
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.25
Consensus pattern (43 bp):
ATATCACGAACTCAAACCACAACTCAATGAGTTCAGTTCACAT
Found at i:97240032 original size:24 final size:24
Alignment explanation
Indices: 97239997--97240052 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
97239987 GAAAGGTTCT
*
97239997 CCACGACTGCCATGTCCTACTCGA
1 CCACGACCGCCATGTCCTACTCGA
*
97240021 CCACGACCGCCATGTCCTGCTCGA
1 CCACGACCGCCATGTCCTACTCGA
97240045 CCACGACC
1 CCACGACC
97240053 ATAGCTACCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.20, C:0.46, G:0.18, T:0.16
Consensus pattern (24 bp):
CCACGACCGCCATGTCCTACTCGA
Found at i:97242208 original size:14 final size:15
Alignment explanation
Indices: 97242189--97242218 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
97242179 ATATTTAACT
97242189 TGTTCTTAATT-ATG
1 TGTTCTTAATTCATG
97242203 TGTTCTTAATTCATG
1 TGTTCTTAATTCATG
97242218 T
1 T
97242219 TTTGATATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.20, C:0.10, G:0.13, T:0.57
Consensus pattern (15 bp):
TGTTCTTAATTCATG
Found at i:97244596 original size:65 final size:70
Alignment explanation
Indices: 97244519--97244674 Score: 162
Period size: 65 Copynumber: 2.3 Consensus size: 70
97244509 CATCATGTGT
* * * ** *
97244519 ACAAGAAAGCTACGAGACACCCTGTA-GTAGCTAGGTCACATGTGTGA-T-A-CGAAGGAC-CCA
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCAGCGAAGGACACCA
97244579 TGTAG
66 TGTAG
* * * *
97244584 ACAAGAGAGCTACGTGA-AAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACAC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATT-C-AGCGAAGGACAC
97244648 CATGTAG
64 CATGTAG
97244655 ACAAGAGAGCTACGAGACAA
1 ACAAGAGAGCTACGAGACAA
97244675 ATCGGTTAGG
Statistics
Matches: 72, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
64 3 0.04
65 34 0.47
66 1 0.01
69 1 0.01
70 7 0.10
71 24 0.33
72 2 0.03
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.17
Consensus pattern (70 bp):
ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCAGCGAAGGACACCA
TGTAG
Found at i:97252105 original size:71 final size:72
Alignment explanation
Indices: 97252023--97252184 Score: 238
Period size: 71 Copynumber: 2.3 Consensus size: 72
97252013 CATCATGTGT
* * * **
97252023 ACAAGAAAGCTACGAGACACCCTGTA-GTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
97252087 CATGTAG
66 CATGTAG
* * *
97252094 ACAAGAGAGCTACGTGA-AAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACAC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
97252158 CATGTAG
66 CATGTAG
97252165 ACAAGAGAGCTACGAGACAA
1 ACAAGAGAGCTACGAGACAA
97252185 ATCGGTTAGG
Statistics
Matches: 80, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
70 3 0.04
71 75 0.94
72 2 0.03
ACGTcount: A:0.36, C:0.20, G:0.27, T:0.17
Consensus pattern (72 bp):
ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
CATGTAG
Found at i:97261254 original size:46 final size:45
Alignment explanation
Indices: 97261141--97261357 Score: 172
Period size: 46 Copynumber: 4.7 Consensus size: 45
97261131 GCATATCTAT
* * * *
97261141 GCCGATGCCATGTCCCAGACATGGTCTTGCACTGTC-ACATCTCATA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCGTCTCA-AG
* * *
97261187 GCCAATGCATGTCCCAGACATGTCTTACACTGGCTTACGTTTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTCAAG
* * * * * *
97261233 GCTGATGCATGTCCCAAACATGTCTTATACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCGTCTCAAG
*
97261279 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TC-TCTTAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCGTCTCAA---G
* *
97261327 GTCGATTCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
97261358 AGCTCACACA
Statistics
Matches: 138, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
44 11 0.08
45 20 0.14
46 63 0.46
47 28 0.20
48 16 0.12
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCTCAAG
Found at i:97268311 original size:19 final size:19
Alignment explanation
Indices: 97268274--97268311 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
97268264 AAAAATCATA
*
97268274 TTTTTTACATTTAATATAT
1 TTTTTTACATTTAAAATAT
97268293 TTTTTTA-ATTTCAAAATAT
1 TTTTTTACATTT-AAAATAT
97268312 ATAGTGATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTTTTACATTTAAAATAT
Found at i:97269113 original size:13 final size:13
Alignment explanation
Indices: 97269097--97269130 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
97269087 TTTCATTTTT
97269097 TATTTTAATTTAA
1 TATTTTAATTTAA
97269110 TATTTTAATTTAA
1 TATTTTAATTTAA
97269123 T-TTTTAAT
1 TATTTTAAT
97269131 ATATATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.33
13 14 0.67
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
TATTTTAATTTAA
Found at i:97269190 original size:16 final size:17
Alignment explanation
Indices: 97269162--97269200 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
97269152 TTTTTAACAG
97269162 ATTT-TTTTAAAATATT
1 ATTTATTTTAAAATATT
97269178 ATTTATTTT-AAATATT
1 ATTTATTTTAAAATATT
97269194 ACTTTAT
1 A-TTTAT
97269201 ATATTTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (17 bp):
ATTTATTTTAAAATATT
Found at i:97269766 original size:20 final size:20
Alignment explanation
Indices: 97269730--97269767 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97269720 TAATAAAATT
**
97269730 TTATAAAATTATTAAAATAA
1 TTATAAAATTAAGAAAATAA
97269750 TTATAAAATTAAGAAAAT
1 TTATAAAATTAAGAAAAT
97269768 TTCATTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (20 bp):
TTATAAAATTAAGAAAATAA
Found at i:97271219 original size:17 final size:17
Alignment explanation
Indices: 97271199--97271232 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
97271189 AAATAGATTT
97271199 TTAATTAAAAAATTTAA
1 TTAATTAAAAAATTTAA
*
97271216 TTAATTAAAAATTTTAA
1 TTAATTAAAAAATTTAA
97271233 ACCTAAATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAATTAAAAAATTTAA
Found at i:97272188 original size:24 final size:22
Alignment explanation
Indices: 97272157--97272202 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
97272147 AATAAACAAG
*
97272157 TAATTTAATCCATTTATCTTTAA
1 TAATTTAATCAATTTAT-TTTAA
*
97272180 TAATATTAATTAATTTATTTTAA
1 TAAT-TTAATCAATTTATTTTAA
97272203 ATAAAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (22 bp):
TAATTTAATCAATTTATTTTAA
Found at i:97272782 original size:21 final size:21
Alignment explanation
Indices: 97272752--97272793 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
97272742 AAACTTTTAG
97272752 TTATGACCATTGGATGCCAAC
1 TTATGACCATTGGATGCCAAC
* *
97272773 TTATGGCCATTGGATGTCAAC
1 TTATGACCATTGGATGCCAAC
97272794 GTCTTATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (21 bp):
TTATGACCATTGGATGCCAAC
Found at i:97274301 original size:25 final size:26
Alignment explanation
Indices: 97274238--97274308 Score: 65
Period size: 26 Copynumber: 2.7 Consensus size: 26
97274228 ATACTTCGTC
*
97274238 TTTTCTAA-ATATTATATATGCATATA
1 TTTTCTAATATA-TATATATGCATACA
** *
97274264 TATTTCTTTTATATAT-TATGTATACA
1 T-TTTCTAATATATATATATGCATACA
*
97274290 TTTTCTAATATATACATAT
1 TTTTCTAATATATATATAT
97274309 ACTATGTAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
25 11 0.31
26 13 0.37
27 8 0.23
28 3 0.09
ACGTcount: A:0.35, C:0.08, G:0.03, T:0.54
Consensus pattern (26 bp):
TTTTCTAATATATATATATGCATACA
Found at i:97286684 original size:88 final size:87
Alignment explanation
Indices: 97286535--97286792 Score: 342
Period size: 86 Copynumber: 3.0 Consensus size: 87
97286525 ACATAGAACT
*
97286535 GATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCT
1 GATTTACAGATCTTAACCCCCTAAGCAGTAAGGAAACAGATCGAAGACGAAGGGCCTTAAACCCT
*
97286600 AAGCAGTAGGGTAACAGGCTGAA
66 AAGCAGTAGGGTAACAGACTG-A
*
97286623 GATTTACAGATCTTAACCCCCTAAGCAGTAAGGAAACAGATCAAAGACGAAGGGCCTTAAACCCC
1 GATTTACAGATCTTAACCCCCTAAGCAGTAAGGAAACAGATCGAAGACGAAGGGCCTTAAA-CCC
*
97286688 TAAGCAGTAAGGTAACAGACTGA
65 TAAGCAGTAGGGTAACAGACTGA
* * * * * ** *
97286711 -A-TTGCAGATCTTATCTCCCTAAGCAGT-AGTAGAGCAGATCGAAGACGAAGGATCTTAACCCC
1 GATTTACAGATCTTAACCCCCTAAGCAGTAAGGA-AACAGATCGAAGACGAAGGGCCTTAA-ACC
*
97286773 CTAAGCAGTAGGGAAACAGA
64 CTAAGCAGTAGGGTAACAGA
97286793 TCAGAGGTGA
Statistics
Matches: 152, Mismatches: 15, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
85 3 0.02
86 65 0.43
87 1 0.01
88 60 0.39
89 23 0.15
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (87 bp):
GATTTACAGATCTTAACCCCCTAAGCAGTAAGGAAACAGATCGAAGACGAAGGGCCTTAAACCCT
AAGCAGTAGGGTAACAGACTGA
Found at i:97286697 original size:44 final size:44
Alignment explanation
Indices: 97286546--97286835 Score: 175
Period size: 44 Copynumber: 6.6 Consensus size: 44
97286536 ATTTACAGAT
* * *
97286546 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGC
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCAAAGACGAAGGAC
* * * ** *
97286590 CTTAAA-CCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACA-GAT
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATC-AAAGA-CGA-AGGAC
* * *
97286634 CTTAACCCCCTAAGCAGTAAGGAAACAGATCAAAGACGAAGGGC
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCAAAGACGAAGGAC
* * * * *
97286678 CTTAAACCCCTAAGCAGTAAGGTAACAGACTGAATTG-C--A-GAT
1 CTTAAACCCCTAAGCAGTAGGGAAACAGA-TCAA-AGACGAAGGAC
* * * * *
97286720 CTT-ATCTCCCTAAGCAGTA-GTAGAGCAGATCGAAGACGAAGGAT
1 CTTAAAC-CCCTAAGCAGTAGGGA-AACAGATCAAAGACGAAGGAC
* * ** * *
97286764 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAGAGGTGATGGGC
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCAAAGACGAAGGAC
* * *
97286808 CTTGAACCCCTATGCAGTAGGGTAACAG
1 CTTAAACCCCTAAGCAGTAGGGAAACAG
97286836 GCCGAAAATT
Statistics
Matches: 187, Mismatches: 43, Indels: 32
0.71 0.16 0.12
Matches are distributed among these distances:
40 1 0.01
41 6 0.03
42 22 0.12
43 28 0.15
44 96 0.51
45 32 0.17
46 2 0.01
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (44 bp):
CTTAAACCCCTAAGCAGTAGGGAAACAGATCAAAGACGAAGGAC
Found at i:97288528 original size:2 final size:2
Alignment explanation
Indices: 97288521--97288554 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
97288511 TTGATACTTT
97288521 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
97288555 TACATGGCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:97288750 original size:25 final size:26
Alignment explanation
Indices: 97288687--97288757 Score: 65
Period size: 26 Copynumber: 2.7 Consensus size: 26
97288677 ATACTTTGTC
*
97288687 TTTTCTAA-ATATTATATATGCATATA
1 TTTTCTAATATA-TATATATGCATACA
** *
97288713 TATTTCTTTTATATAT-TATGTATACA
1 T-TTTCTAATATATATATATGCATACA
*
97288739 TTTTCTAATATATACATAT
1 TTTTCTAATATATATATAT
97288758 ACTATGTAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
25 11 0.31
26 13 0.37
27 8 0.23
28 3 0.09
ACGTcount: A:0.35, C:0.08, G:0.03, T:0.54
Consensus pattern (26 bp):
TTTTCTAATATATATATATGCATACA
Found at i:97288903 original size:16 final size:17
Alignment explanation
Indices: 97288879--97288911 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
97288869 GTGTATTGTA
97288879 TATACATTTTTA-ATAT
1 TATACATTTTTATATAT
*
97288895 TATATATTTTTATATAT
1 TATACATTTTTATATAT
97288912 ATTATGTACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TATACATTTTTATATAT
Found at i:97291435 original size:47 final size:47
Alignment explanation
Indices: 97291343--97291455 Score: 122
Period size: 47 Copynumber: 2.4 Consensus size: 47
97291333 GTGCGAATCG
* * * *
97291343 TATTGTAGAATTACCACGAACTATATTTACAGAAATGCTGGGAAATA
1 TATTGTAAAATTACCACAAACTATATGTACAGAAATGCTGCGAAATA
* * *
97291390 TATTGTAAAATTACTACAAACTGTATGTACAGAAATG-TCGCGAAATG
1 TATTGTAAAATTACCACAAACTATATGTACAGAAATGCT-GCGAAATA
* *
97291437 TATTATAAAA-TACCGCAAA
1 TATTGTAAAATTACCACAAA
97291456 TTGTATTGTA
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
46 8 0.15
47 47 0.85
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.29
Consensus pattern (47 bp):
TATTGTAAAATTACCACAAACTATATGTACAGAAATGCTGCGAAATA
Found at i:97291541 original size:54 final size:54
Alignment explanation
Indices: 97291482--97291839 Score: 323
Period size: 54 Copynumber: 6.7 Consensus size: 54
97291472 AAGATTATGT
* * * * * * *
97291482 AAATCTTGTATGTTGAAGGTCGTGATTGTAAATCAGCGGACCGTGAGATTTGTA
1 AAATCTTGTAAGTAGAAGGTCGTGATCGTAAATTAGCGAACTGTGAGATTCGTA
* * * *
97291536 AAATCTTGCAAGT---AGGTCATGATCATAAATTAGCGAATTGTGAGACTT-GTA
1 AAATCTTGTAAGTAGAAGGTCGTGATCGTAAATTAGCGAACTGTGAGA-TTCGTA
* * * * *
97291587 AAACCCTGTAAGTAGAAGGTCGTGATTGTAAATTAGAGGACTGTGAGATTCGTA
1 AAATCTTGTAAGTAGAAGGTCGTGATCGTAAATTAGCGAACTGTGAGATTCGTA
* * * * *
97291641 AAATCTCGTAAGTAGAAAGTCATGATCGTAAATTAGCAAACTGTGATATTCGTA
1 AAATCTTGTAAGTAGAAGGTCGTGATCGTAAATTAGCGAACTGTGAGATTCGTA
* * * * * * * *
97291695 AAATCCTGAAATTAGAAGGTTGTGATTGTAAATTAGCGGA-TCATGAGATTCATA
1 AAATCTTGTAAGTAGAAGGTCGTGATCGTAAATTAGCGAACT-GTGAGATTCGTA
** *
97291749 AAATCCAGTAAGTAGAAGGTCGTGATCGTAAATTAGCGAACTGTGAGATTCATA
1 AAATCTTGTAAGTAGAAGGTCGTGATCGTAAATTAGCGAACTGTGAGATTCGTA
* * **
97291803 AAATCTCGTAAGTAAAAGG-CTGTGAAGGTAAATTAGC
1 AAATCTTGTAAGTAGAAGGTC-GTGATCGTAAATTAGC
97291840 AGTGTAACAC
Statistics
Matches: 243, Mismatches: 53, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
51 38 0.16
52 2 0.01
53 4 0.02
54 198 0.81
55 1 0.00
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.29
Consensus pattern (54 bp):
AAATCTTGTAAGTAGAAGGTCGTGATCGTAAATTAGCGAACTGTGAGATTCGTA
Found at i:97291720 original size:108 final size:107
Alignment explanation
Indices: 97291496--97291807 Score: 382
Period size: 108 Copynumber: 2.9 Consensus size: 107
97291486 CTTGTATGTT
* * * * *
97291496 GAAGGTCGTGATTGTAAATCAGCGGACCGTGAGATTTGTAAAATCTTGCAAGTAG--GTCATGAT
1 GAAGGTCGTGATTGTAAATTAGCGGACTGTGAGATTCGTAAAATCTCGTAAGTAGAAGTCATGAT
* * * *
97291559 CATAAATTAGCGAATTGTGAGACTT-GTAAAACCCTGTAAGTA
66 CGTAAATTAGCGAACTGTGAGA-TTCGTAAAATCCTGAAAGTA
*
97291601 GAAGGTCGTGATTGTAAATTAGAGGACTGTGAGATTCGTAAAATCTCGTAAGTAGAAAGTCATGA
1 GAAGGTCGTGATTGTAAATTAGCGGACTGTGAGATTCGTAAAATCTCGTAAGTAG-AAGTCATGA
* * *
97291666 TCGTAAATTAGCAAACTGTGATATTCGTAAAATCCTGAAATTA
65 TCGTAAATTAGCGAACTGTGAGATTCGTAAAATCCTGAAAGTA
* * * *
97291709 GAAGGTTGTGATTGTAAATTAGCGGA-TCATGAGATTCATAAAATC-CAGTAAGTAGAAGGTCGT
1 GAAGGTCGTGATTGTAAATTAGCGGACT-GTGAGATTCGTAAAATCTC-GTAAGTAGAA-GTCAT
*
97291772 GATCGTAAATTAGCGAACTGTGAGATTCATAAAATC
63 GATCGTAAATTAGCGAACTGTGAGATTCGTAAAATC
97291808 TCGTAAGTAA
Statistics
Matches: 179, Mismatches: 21, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
105 49 0.27
107 6 0.03
108 124 0.69
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.29
Consensus pattern (107 bp):
GAAGGTCGTGATTGTAAATTAGCGGACTGTGAGATTCGTAAAATCTCGTAAGTAGAAGTCATGAT
CGTAAATTAGCGAACTGTGAGATTCGTAAAATCCTGAAAGTA
Found at i:97291827 original size:108 final size:107
Alignment explanation
Indices: 97291482--97291839 Score: 361
Period size: 108 Copynumber: 3.3 Consensus size: 107
97291472 AAGATTATGT
* * * * ** ** * *
97291482 AAATCTTGTATGTTGAAGGTCGTGATTGTAAATCAGCGGACCGTGAGATTTGTAAAATCTTGCAA
1 AAATCCTGTAAGTAGAAGGT-GTGATTGTAAATTAGCGGACTATGAGATTCATAAAATCTCGTAA
* *
97291547 GT---AGGTCATGATCATAAATTAGCGAATTGTGAGACTT-GTA
65 GTAGAAGGTCATGATCGTAAATTAGCGAACTGTGAGA-TTCGTA
* * * *
97291587 AAACCCTGTAAGTAGAAGGTCGTGATTGTAAATTAGAGGACTGTGAGATTCGTAAAATCTCGTAA
1 AAATCCTGTAAGTAGAAGGT-GTGATTGTAAATTAGCGGACTATGAGATTCATAAAATCTCGTAA
* * *
97291652 GTAGAAAGTCATGATCGTAAATTAGCAAACTGTGATATTCGTA
65 GTAGAAGGTCATGATCGTAAATTAGCGAACTGTGAGATTCGTA
* *
97291695 AAATCCTGAAATTAGAAGGTTGTGATTGTAAATTAGCGGA-TCATGAGATTCATAAAATC-CAGT
1 AAATCCTGTAAGTAGAAGG-TGTGATTGTAAATTAGCGGACT-ATGAGATTCATAAAATCTC-GT
* *
97291758 AAGTAGAAGGTCGTGATCGTAAATTAGCGAACTGTGAGATTCATA
63 AAGTAGAAGGTCATGATCGTAAATTAGCGAACTGTGAGATTCGTA
* **
97291803 AAAT-CTCGTAAGTAAAAGGCTGTGAAGGTAAATTAGC
1 AAATCCT-GTAAGTAGAAGG-TGTGATTGTAAATTAGC
97291840 AGTGTAACAC
Statistics
Matches: 213, Mismatches: 32, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
105 57 0.27
107 6 0.03
108 149 0.70
109 1 0.00
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.29
Consensus pattern (107 bp):
AAATCCTGTAAGTAGAAGGTGTGATTGTAAATTAGCGGACTATGAGATTCATAAAATCTCGTAAG
TAGAAGGTCATGATCGTAAATTAGCGAACTGTGAGATTCGTA
Found at i:97302683 original size:54 final size:54
Alignment explanation
Indices: 97302593--97302724 Score: 165
Period size: 54 Copynumber: 2.4 Consensus size: 54
97302583 TGTTACAAGC
* * * *
97302593 AGACTGTGAGATTCATAAAATCCCTAAAGTAAAAGGTCGTGATTATAAATCAGT
1 AGACTGTGAGATTCGTAAAATCCCAAAAATAAAAGGTCATGATTATAAATCAGT
* * * * *
97302647 GGACTGTGAGATTTGTAAAATCCCAAAAATAGAAGGTTATGATTGTAAATCAGT
1 AGACTGTGAGATTCGTAAAATCCCAAAAATAAAAGGTCATGATTATAAATCAGT
* *
97302701 AAACCGTGAGATTCGTAAAATCCC
1 AGACTGTGAGATTCGTAAAATCCC
97302725 GTAAGTAGAA
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (54 bp):
AGACTGTGAGATTCGTAAAATCCCAAAAATAAAAGGTCATGATTATAAATCAGT
Found at i:97302847 original size:13 final size:13
Alignment explanation
Indices: 97302829--97302857 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
97302819 ATTAAACTGG
97302829 CTAGAGTATATAA
1 CTAGAGTATATAA
97302842 CTAGAGTATATAA
1 CTAGAGTATATAA
97302855 CTA
1 CTA
97302858 AATGGAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.10, G:0.14, T:0.31
Consensus pattern (13 bp):
CTAGAGTATATAA
Found at i:97313535 original size:28 final size:28
Alignment explanation
Indices: 97313466--97313566 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
97313456 GACAAGATTG
* * * *
97313466 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
97313496 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
97313524 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
97313553 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
97313567 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:97313560 original size:29 final size:28
Alignment explanation
Indices: 97313495--97313566 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
97313485 AAAATTGTAC
*
97313495 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
97313523 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
97313552 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
97313567 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:97321342 original size:28 final size:28
Alignment explanation
Indices: 97321273--97321373 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
97321263 GACAAGATTG
* * * *
97321273 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
97321303 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
97321331 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
97321360 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
97321374 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:97321367 original size:29 final size:28
Alignment explanation
Indices: 97321302--97321373 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
97321292 AAAATTGTAC
*
97321302 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
97321330 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
97321359 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
97321374 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:97325676 original size:40 final size:40
Alignment explanation
Indices: 97325614--97325868 Score: 342
Period size: 40 Copynumber: 6.4 Consensus size: 40
97325604 AAACCAAGTA
* * *
97325614 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
97325653 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
97325693 CCTTC-GGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
97325732 CCTTCGGGACTTAGCCCGGAAATAGTAACTCAG-ACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTC-GCACAAATG
97325772 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
**
97325812 CCTTCGGGACTTAGCCTTGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
97325852 CCTTTGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
97325869 CGTTATCATC
Statistics
Matches: 197, Mismatches: 13, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
39 51 0.26
40 145 0.74
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:97328252 original size:40 final size:40
Alignment explanation
Indices: 97328136--97328312 Score: 245
Period size: 39 Copynumber: 4.5 Consensus size: 40
97328126 GCTCGATTGT
* * *
97328136 CTTCGGGACATAGCCCGG-TTTAGTAATTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
97328175 CTTCGGGACTTAACCCGGATTT-GTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
*
97328214 CTTCGGGACTTAACCCGGATTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* * *
97328254 CTTC-GGACTT-ACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGC
*
97328293 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAACCCGGAT
97328313 ACATTCGAAT
Statistics
Matches: 125, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
38 14 0.11
39 74 0.59
40 30 0.24
41 7 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:97328287 original size:79 final size:79
Alignment explanation
Indices: 97328136--97328312 Score: 252
Period size: 79 Copynumber: 2.3 Consensus size: 79
97328126 GCTCGATTGT
* *
97328136 CTTCGGGACATAGCCCGG-TTTAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGTA
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGTA
* *
97328200 ACTCGCACAAATGC
66 ACTAGCACAAAAGC
* *
97328214 CTTCGGGACTTAACCCGGATTTGGTAACTCGCACAAATGCCTTC-GGACTT-ACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTT-GT
*
97328277 CACTTAGCACAAAAGC
65 AAC-TAGCACAAAAGC
97328293 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAGCCCGGAT
97328313 ACATTCGAAT
Statistics
Matches: 88, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
77 10 0.11
78 26 0.30
79 52 0.59
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGTA
ACTAGCACAAAAGC
Found at i:97336256 original size:40 final size:40
Alignment explanation
Indices: 97336176--97336353 Score: 245
Period size: 39 Copynumber: 4.5 Consensus size: 40
97336166 GCTCGATTGT
* * *
97336176 CTTCGGGACATAGCCCGG-TTTAGTAATTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
*
97336215 CTTCGGGACTTAACCCGGATTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
*
97336255 CTTCGGGA-TTAACCCGGATTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* * *
97336294 CTTCGGGACTT-ACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGC
*
97336334 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAACCCGGAT
97336354 ACCATTCGAA
Statistics
Matches: 126, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
39 69 0.55
40 50 0.40
41 7 0.06
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:97336286 original size:79 final size:80
Alignment explanation
Indices: 97336176--97336353 Score: 245
Period size: 79 Copynumber: 2.2 Consensus size: 80
97336166 GCTCGATTGT
* * * *
97336176 CTTCGGGACATAGCCCGG-TTTAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGT
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTT-ACCCGGATTTAGT
* *
97336240 AAC-TCGCACAAATGC
65 AACTTAGCACAAAAGC
* *
97336255 CTTCGGGA-TTAACCCGGATTTGGTAACTCGCACAAATGCCTTCGGGACTTACCCGGATTTAGTC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTACCCGGATTTAGTA
97336319 ACTTAGCACAAAAGC
66 ACTTAGCACAAAAGC
*
97336334 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAACCCGGAT
97336354 ACCATTCGAA
Statistics
Matches: 87, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
78 21 0.24
79 56 0.64
80 10 0.11
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTACCCGGATTTAGTA
ACTTAGCACAAAAGC
Done.