Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 314 of 433
Found at i:97916492 original size:27 final size:27
Alignment explanation
Indices: 97916448--97916591 Score: 225
Period size: 27 Copynumber: 5.3 Consensus size: 27
97916438 TGTATAATAT
97916448 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
97916475 CGAAATACCCCTGAAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
97916502 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
97916529 CGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
97916556 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
97916583 CGAGATACC
1 CGAAATACC
97916592 TTGTGAGGTA
Statistics
Matches: 106, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:97917048 original size:31 final size:31
Alignment explanation
Indices: 97917010--97917080 Score: 115
Period size: 31 Copynumber: 2.3 Consensus size: 31
97917000 TTGCATTCAC
*
97917010 ATTCTGATTTTGATTCTGTTACTTGATACCA
1 ATTCTGATTTTGATTCTGTTACCTGATACCA
**
97917041 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACCA
97917072 ATTCTGATT
1 ATTCTGATT
97917081 CTGTCACCTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.21, C:0.15, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACCA
Found at i:97917072 original size:25 final size:25
Alignment explanation
Indices: 97917044--97917108 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
97917034 GATACCAATT
* * *
97917044 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTAATA
*
97917069 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
97917094 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
97917109 ATTCTAGTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:97917080 original size:6 final size:6
Alignment explanation
Indices: 97917010--97917122 Score: 63
Period size: 6 Copynumber: 18.3 Consensus size: 6
97917000 TTGCATTCAC
* * ** *
97917010 ATTCTG ATTTTG ATTCTG -TTACTTG ATACCA ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
97917059 -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
97917109 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
97917123 AATGTTTCTT
Statistics
Matches: 80, Mismatches: 16, Indels: 22
0.68 0.14 0.19
Matches are distributed among these distances:
5 6 0.08
6 62 0.77
7 9 0.11
8 3 0.04
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:97919391 original size:3 final size:3
Alignment explanation
Indices: 97919377--97919432 Score: 53
Period size: 3 Copynumber: 18.7 Consensus size: 3
97919367 CTTTAACTTT
* * *
97919377 TTC TTT TTC TTC TTC TTC TT- TTG TTC TTC TTG TTC TT- TTC TTC TTTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC
97919424 TTTC TTC TT
1 -TTC TTC TT
97919433 TCACCTTTCT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
2 4 0.09
3 34 0.76
4 7 0.16
ACGTcount: A:0.00, C:0.23, G:0.04, T:0.73
Consensus pattern (3 bp):
TTC
Found at i:97919403 original size:14 final size:13
Alignment explanation
Indices: 97919380--97919432 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 13
97919370 TAACTTTTTC
97919380 TTTTTCTTCTTCT
1 TTTTTCTTCTTCT
*
97919393 TCTTTTGTTCTTCT
1 T-TTTTCTTCTTCT
97919407 TGTTCTT-TTCTTCT
1 T-TT-TTCTTCTTCT
97919421 TTCTTTCTTCTT
1 TT-TTTCTTCTT
97919433 TCACCTTTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
13 4 0.12
14 28 0.82
15 2 0.06
ACGTcount: A:0.00, C:0.23, G:0.04, T:0.74
Consensus pattern (13 bp):
TTTTTCTTCTTCT
Found at i:97919427 original size:11 final size:11
Alignment explanation
Indices: 97919376--97919434 Score: 54
Period size: 11 Copynumber: 5.4 Consensus size: 11
97919366 TCTTTAACTT
97919376 TTTCTTT-TTC
1 TTTCTTTCTTC
97919386 -TTC-TTCTTC
1 TTTCTTTCTTC
97919395 TTT-TGTTCTTC
1 TTTCT-TTCTTC
97919406 TTGTTCTTTTCTTC
1 -T-TTC-TTTCTTC
97919420 TTTCTTTCTTC
1 TTTCTTTCTTC
97919431 TTTC
1 TTTC
97919435 ACCTTTCTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 15
0.73 0.00 0.27
Matches are distributed among these distances:
8 2 0.05
9 6 0.15
10 2 0.05
11 17 0.41
12 4 0.10
13 3 0.07
14 6 0.15
15 1 0.02
ACGTcount: A:0.00, C:0.24, G:0.03, T:0.73
Consensus pattern (11 bp):
TTTCTTTCTTC
Found at i:97933312 original size:51 final size:51
Alignment explanation
Indices: 97933257--97933362 Score: 133
Period size: 51 Copynumber: 2.1 Consensus size: 51
97933247 CTACCTCATA
* * * *
97933257 ACATGTAA-CACATCCATAATGAACTTGGACCTCTCAACAAGCTTGGATGTT
1 ACATG-AATCACATCCATAATGAACTTCGACCACTCAACAAGCTCGGATGCT
** *
97933308 ACATGAATCGTATCCATAATGAACTTCGACCACTCAACGAGCTCGGATGCT
1 ACATGAATCACATCCATAATGAACTTCGACCACTCAACAAGCTCGGATGCT
97933359 ACAT
1 ACAT
97933363 ACCTCACGAA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.04
51 45 0.96
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (51 bp):
ACATGAATCACATCCATAATGAACTTCGACCACTCAACAAGCTCGGATGCT
Found at i:97935223 original size:47 final size:47
Alignment explanation
Indices: 97935157--97935470 Score: 208
Period size: 47 Copynumber: 6.6 Consensus size: 47
97935147 TTTGTGTGCT
97935157 AGTGTAAGA-CATGTCTGGGACAT-GCATCGCCCACATTATGA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCG--CACATTATGATGAGCC
* * * *
97935203 AGTGTAAGACCATGTATGGGACATGGCATTG-GCATTGA-GACGAAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGCACATT-ATGATG--AGCC
* * *
97935251 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAC--GA-GATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GC-ACATTATGATGAGCC
* * * * * *
97935295 AATGTAAGACCATGTGTAGGACATGGCATCGGGACGGATATGTGA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCAC--AT-TATGATGAGCC
*
97935345 AGTGTAAGACCATGTCTGGGACATGGCATTCGCCTCGATT-TCGAT-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCG-CAC-ATTAT-GATGAGCC
* * *
97935394 AGTGTAATACCATGTCTGAGACATGGCATCG-AC-TTAACGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGCACATT-A-TGATGAGCC
*
97935441 AGTGTAAGACCATGTCTGGGACATGCCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
97935471 AGTATTATAC
Statistics
Matches: 211, Mismatches: 32, Indels: 49
0.72 0.11 0.17
Matches are distributed among these distances:
44 12 0.06
45 20 0.09
46 30 0.14
47 58 0.27
48 22 0.10
49 33 0.16
50 31 0.15
51 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGCACATTATGATGAGCC
Found at i:97935349 original size:94 final size:93
Alignment explanation
Indices: 97935154--97935378 Score: 229
Period size: 94 Copynumber: 2.4 Consensus size: 93
97935144 TTATTTGTGT
* *
97935154 GCTAGTGTAAGACATGTCTGGGACATGCATCGCCCACATTATGAGAGCCAGTGTAAGACCATGTA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGCCCACATGAT-AGAGCCAATGTAAGACCATGTA
* * **
97935219 TGGGACATGGCATTGGCATTGAGACGAAA
65 TAGGACATGGCATCGGCACGGAGACGAAA
* * * * * *
97935248 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GAT-GTGTCAATGTAAGACCATGTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGCCCAC-ATGATAGAGCCAATGTAAGACCATGTA
* * * *
97935311 TAGGACATGGCATCGGGACGGATATGTGAGA
65 TAGGACATGGCATCGGCACGGAGA--CGAAA
97935342 GCTAGTGTAAGACCATGTCTGGGACATGGCATTCGCC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCA-TCGCC
97935379 TCGATTTCGA
Statistics
Matches: 107, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
92 35 0.33
94 50 0.47
95 15 0.14
96 3 0.03
97 4 0.04
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.23
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGCCCACATGATAGAGCCAATGTAAGACCATGTAT
AGGACATGGCATCGGCACGGAGACGAAA
Found at i:97939390 original size:6 final size:6
Alignment explanation
Indices: 97939360--97939478 Score: 84
Period size: 6 Copynumber: 19.3 Consensus size: 6
97939350 AAGAAACATT
* * * *
97939360 ATCAGA A-CTAGA ATCAAA ATGAGA ATTAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
97939409 ATCAGA ATCAGA ATCAGA ATTAG- ATGACAAA ATCAGA ATCAGT ATCAAGTA
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATC-AG-A
97939460 A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
97939479 GTGAATACAA
Statistics
Matches: 89, Mismatches: 13, Indels: 22
0.72 0.10 0.18
Matches are distributed among these distances:
5 6 0.07
6 71 0.80
7 8 0.09
8 4 0.04
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:97939415 original size:25 final size:25
Alignment explanation
Indices: 97939381--97939478 Score: 97
Period size: 25 Copynumber: 3.7 Consensus size: 25
97939371 AATCAAAATG
*
97939381 AGAATTAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
97939406 AGAATCAGAATCAGAATCAGAATTAGATGAC
1 AGAATCAGAATCAGAATCAG-----G-TGAC
* * * *
97939437 AAAATCAGAATCAGTATCAAGTAAC
1 AGAATCAGAATCAGAATCAGGTGAC
97939462 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
97939479 GTGAATACAA
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
25 37 0.62
26 1 0.02
30 1 0.02
31 21 0.35
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:97939422 original size:31 final size:31
Alignment explanation
Indices: 97939374--97939455 Score: 110
Period size: 31 Copynumber: 2.6 Consensus size: 31
97939364 GAACTAGAAT
* * *
97939374 CAAAATGAGAATTAGAATCAGAATCAGGTGA
1 CAAAATCAGAATCAGAATCAGAATCAGATGA
* *
97939405 CAGAATCAGAATCAGAATCAGAATTAGATGA
1 CAAAATCAGAATCAGAATCAGAATCAGATGA
*
97939436 CAAAATCAGAATCAGTATCA
1 CAAAATCAGAATCAGAATCA
97939456 AGTAACAGAA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (31 bp):
CAAAATCAGAATCAGAATCAGAATCAGATGA
Found at i:97939474 original size:31 final size:30
Alignment explanation
Indices: 97939381--97939478 Score: 89
Period size: 31 Copynumber: 3.4 Consensus size: 30
97939371 AATCAAAATG
* *
97939381 AGAATTAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAAGT-ACAGAATC
* *
97939412 AGAATCAGAATCAGAAT-TAG-A-TG-A-C
1 AGAATCAGAATCAGAATCAAGTACAGAATC
* *
97939437 AAAATCAGAATCAGTATCAAGTAACAGAATC
1 AGAATCAGAATCAGAATCAAGT-ACAGAATC
97939468 AGAATCAGAAT
1 AGAATCAGAAT
97939479 GTGAATACAA
Statistics
Matches: 52, Mismatches: 9, Indels: 12
0.71 0.12 0.16
Matches are distributed among these distances:
25 16 0.31
26 3 0.06
27 1 0.02
28 2 0.04
29 1 0.02
30 2 0.04
31 27 0.52
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.19
Consensus pattern (30 bp):
AGAATCAGAATCAGAATCAAGTACAGAATC
Found at i:97939677 original size:27 final size:27
Alignment explanation
Indices: 97939600--97939677 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
97939590 TAGCTGCCAG
* * * *
97939600 AACAAATATTGTGACAAAGTCACCAGA
1 AACAGATATTGTGGCAAAGCCACTAGA
* *
97939627 TACAGATATTGTGGCAGAGCCACTAGA
1 AACAGATATTGTGGCAAAGCCACTAGA
*
97939654 AACAGATAATGTGGCAAAGCCACT
1 AACAGATATTGTGGCAAAGCCACT
97939678 TAACAGAATA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.19
Consensus pattern (27 bp):
AACAGATATTGTGGCAAAGCCACTAGA
Found at i:97939690 original size:25 final size:25
Alignment explanation
Indices: 97939628--97939694 Score: 73
Period size: 27 Copynumber: 2.6 Consensus size: 25
97939618 GTCACCAGAT
*
97939628 ACAGATATTGTGGCAGAGCCACTAGAA
1 ACAGATA-TGTGGCAAAGCCACTA-AA
*
97939655 ACAGATAATGTGGCAAAGCCACT-TA
1 ACAGAT-ATGTGGCAAAGCCACTAAA
97939680 ACAGAATATGTGGCA
1 ACAG-ATATGTGGCA
97939695 CAAAGCCATC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
25 13 0.36
26 2 0.06
27 20 0.56
28 1 0.03
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.19
Consensus pattern (25 bp):
ACAGATATGTGGCAAAGCCACTAAA
Found at i:97939883 original size:22 final size:21
Alignment explanation
Indices: 97939836--97939894 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
97939826 CAAATACGTT
* *
97939836 TGGCACACAGCCATAATCTGGT
1 TGGCACAAAGCCAT-ATCTGGA
*
97939858 TGGCACAAAGCCATATGTAGGA
1 TGGCACAAAGCCATATCT-GGA
*
97939880 TGGCGCAAAGCCATA
1 TGGCACAAAGCCATA
97939895 ATCAGAATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 3 0.09
22 29 0.91
ACGTcount: A:0.32, C:0.24, G:0.25, T:0.19
Consensus pattern (21 bp):
TGGCACAAAGCCATATCTGGA
Found at i:97941783 original size:40 final size:39
Alignment explanation
Indices: 97941656--97941785 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
97941646 ATGCTGGAAA
* * *
97941656 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
97941697 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
97941735 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
97941776 TTATATCCGG
1 TTATATCCGG
97941786 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:97949731 original size:39 final size:38
Alignment explanation
Indices: 97949638--97949789 Score: 139
Period size: 40 Copynumber: 3.9 Consensus size: 38
97949628 AAATTGAATG
* * * *
97949638 ATATCCGGGCTAAGCCCCGAAGACAATTATGC-TGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCATGG---CT
*
97949678 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTATGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-ATGGCT
*
97949717 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGA-GTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-ATGGC--T
* *
97949757 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA
97949790 CATGCTTATA
Statistics
Matches: 96, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
38 5 0.05
39 30 0.31
40 56 0.58
41 2 0.02
42 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (38 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCATGGCT
Found at i:97949772 original size:40 final size:38
Alignment explanation
Indices: 97949677--97949788 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 38
97949667 TGCTGGAAAT
* *
97949677 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTATGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGATGGC
*
97949716 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGATGGC
*
97949754 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 --TATATCCGGGCTAAGACCCGAAGGCA-TTGTGC
97949789 ACATGCTTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
38 5 0.08
39 29 0.45
40 29 0.45
41 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGATGGC
Found at i:97949802 original size:40 final size:39
Alignment explanation
Indices: 97949676--97949804 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
97949666 ATGCTGGAAA
* * *
97949676 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTATGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCCAT-GC
* *
97949716 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCCATG-C
*
97949754 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-CATGC
97949795 TTATATCCGG
1 TTATATCCGG
97949805 TTATATTCCG
Statistics
Matches: 76, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 31 0.41
40 40 0.53
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCCATGC
Found at i:97951848 original size:21 final size:21
Alignment explanation
Indices: 97951797--97951866 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 21
97951787 CGAGATCGGC
97951797 ACTAAGTGTGCGTGCTGGAAATA
1 ACTAAGTGTGCGTGCTGG-AA-A
97951820 TGGCACTAAGTGTGCGTGCTGGAAA
1 ----ACTAAGTGTGCGTGCTGGAAA
*
97951845 ACTAAGTGTGCATGCTGGAAA
1 ACTAAGTGTGCGTGCTGGAAA
97951866 A
1 A
97951867 TATGCATGTG
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
21 21 0.50
25 1 0.02
26 2 0.05
27 18 0.43
ACGTcount: A:0.30, C:0.14, G:0.31, T:0.24
Consensus pattern (21 bp):
ACTAAGTGTGCGTGCTGGAAA
Found at i:97952774 original size:17 final size:16
Alignment explanation
Indices: 97952752--97952785 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
97952742 AAATCACTAA
97952752 AAATAGTAAGTAGAATT
1 AAATAGTAAGTA-AATT
*
97952769 AAATAGTGAGTAAATT
1 AAATAGTAAGTAAATT
97952785 A
1 A
97952786 TGGAATGAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.53, C:0.00, G:0.18, T:0.29
Consensus pattern (16 bp):
AAATAGTAAGTAAATT
Found at i:97959770 original size:57 final size:57
Alignment explanation
Indices: 97959701--97959808 Score: 164
Period size: 57 Copynumber: 1.9 Consensus size: 57
97959691 GACGAGATCG
* **
97959701 GCACTAAGTGTGCGTGCTGGAAATATATG-CACTAAGTGTGCGTGCTGGAAATATAAT
1 GCACTAAGTGTGCATGCTGGAAA-ATATGACACTAAGTGTGCAAGCTGGAAATATAAT
*
97959758 GCACTAAGTGTGCATGCTGGAAAATATGACACTATGTGTGCAAGCTGGAAA
1 GCACTAAGTGTGCATGCTGGAAAATATGACACTAAGTGTGCAAGCTGGAAA
97959809 AATACGGCAC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
56 5 0.11
57 41 0.89
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (57 bp):
GCACTAAGTGTGCATGCTGGAAAATATGACACTAAGTGTGCAAGCTGGAAATATAAT
Found at i:97959809 original size:28 final size:28
Alignment explanation
Indices: 97959701--97959808 Score: 155
Period size: 28 Copynumber: 3.8 Consensus size: 28
97959691 GACGAGATCG
*
97959701 GCACTAAGTGTGCGTGCTGGAAATATAT
1 GCACTAAGTGTGCATGCTGGAAATATAT
*
97959729 GCACTAAGTGTGCGTGCTGGAAATATAAT
1 GCACTAAGTGTGCATGCTGGAAATAT-AT
97959758 GCACTAAGTGTGCATGCTGGAAA-ATAT
1 GCACTAAGTGTGCATGCTGGAAATATAT
* *
97959785 GACACTATGTGTGCAAGCTGGAAA
1 G-CACTAAGTGTGCATGCTGGAAA
97959809 AATACGGCAC
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
27 3 0.04
28 48 0.64
29 24 0.32
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (28 bp):
GCACTAAGTGTGCATGCTGGAAATATAT
Found at i:97959825 original size:29 final size:28
Alignment explanation
Indices: 97959702--97959832 Score: 77
Period size: 29 Copynumber: 4.6 Consensus size: 28
97959692 ACGAGATCGG
* ** *
97959702 CACTAAGTGTGCGTGCTGGAAATATATG-
1 CACTAGGTGTGCAAGCTGGAAA-ATACGA
* ** *
97959730 CACTAAGTGTGCGTGCTGGAAATATAATG-
1 CACTAGGTGTGCAAGCTGGAAA-AT-ACGA
* * *
97959759 CACTAAGTGTGCATGCTGGAAAATATGA
1 CACTAGGTGTGCAAGCTGGAAAATACGA
* *
97959787 CACTATGTGTGCAAGCTGGAAAAATACGG
1 CACTAGGTGTGCAAGCTGG-AAAATACGA
* *
97959816 CACTGGGTGTGCGAGCT
1 CACTAGGTGTGCAAGCT
97959833 CGGAGGGTAT
Statistics
Matches: 92, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
27 3 0.03
28 44 0.48
29 45 0.49
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (28 bp):
CACTAGGTGTGCAAGCTGGAAAATACGA
Found at i:97959827 original size:57 final size:57
Alignment explanation
Indices: 97959699--97959819 Score: 163
Period size: 57 Copynumber: 2.1 Consensus size: 57
97959689 GTGACGAGAT
* ** *
97959699 CGGCACTAAGTGTGCGTGCTGGAAATATATGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCATGCTGGAAATATATGCACTAAGTGTGCAAGCTGGAAAAATA
** *
97959756 ATGCACTAAGTGTGCATGCTGGAAA-ATATGACACTATGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCATGCTGGAAATATATG-CACTAAGTGTGCAAGCTGGAAAAATA
97959813 CGGCACT
1 CGGCACT
97959820 GGGTGTGCGA
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
56 5 0.09
57 49 0.91
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (57 bp):
CGGCACTAAGTGTGCATGCTGGAAATATATGCACTAAGTGTGCAAGCTGGAAAAATA
Found at i:97966911 original size:12 final size:12
Alignment explanation
Indices: 97966896--97966936 Score: 57
Period size: 12 Copynumber: 3.3 Consensus size: 12
97966886 AATAAAATAC
97966896 TTAATAATAAAA
1 TTAATAATAAAA
97966908 TTAA-ATATAATAA
1 TTAATA-ATAA-AA
97966921 TTAATAATAAAA
1 TTAATAATAAAA
97966933 TTAA
1 TTAA
97966937 ATATGTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 1 0.04
12 14 0.54
13 10 0.38
14 1 0.04
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
TTAATAATAAAA
Found at i:97966940 original size:25 final size:25
Alignment explanation
Indices: 97966881--97966940 Score: 102
Period size: 25 Copynumber: 2.4 Consensus size: 25
97966871 TAATTTCTAC
* *
97966881 AATTAAATAAAATACTTAATAATAA
1 AATTAAATATAATAATTAATAATAA
97966906 AATTAAATATAATAATTAATAATAA
1 AATTAAATATAATAATTAATAATAA
97966931 AATTAAATAT
1 AATTAAATAT
97966941 GTTTAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (25 bp):
AATTAAATATAATAATTAATAATAA
Found at i:97969406 original size:2 final size:2
Alignment explanation
Indices: 97969399--97969429 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
97969389 CATAGCAAAA
*
97969399 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
97969430 ACATAGCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:97971399 original size:14 final size:15
Alignment explanation
Indices: 97971382--97971410 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
97971372 ACATGAAAAT
97971382 TTCACACAT-ATAAA
1 TTCACACATAATAAA
97971396 TTCACACATAATAAA
1 TTCACACATAATAAA
97971411 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:97973541 original size:21 final size:20
Alignment explanation
Indices: 97973513--97973551 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
97973503 GGACTAAACA
97973513 GGAAACTTTA-AAAACTTCTG
1 GGAAAC-TTAGAAAACTTCTG
97973533 GGAATACTTAGAAAACTTC
1 GGAA-ACTTAGAAAACTTC
97973552 ATCATGAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.28
Consensus pattern (20 bp):
GGAAACTTAGAAAACTTCTG
Found at i:97977869 original size:42 final size:44
Alignment explanation
Indices: 97977786--97977870 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
97977776 GTTAATTGAG
* *
97977786 AAAGCACTAAGTGTGTGGAATTATTATAGCTTCGGCTAATCTTT
1 AAAGCACTAAGTGTGTCGAATTATTAAAGCTTCGGCTAATCTTT
97977830 AAAGCACTAAGTGTG-CGAATGT-TTAAAGCATT-GG-TAATCTT
1 AAAGCACTAAGTGTGTCGAAT-TATTAAAGC-TTCGGCTAATCTT
97977871 CGGAAAGTCA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
42 7 0.19
43 12 0.32
44 18 0.49
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (44 bp):
AAAGCACTAAGTGTGTCGAATTATTAAAGCTTCGGCTAATCTTT
Found at i:97988087 original size:18 final size:19
Alignment explanation
Indices: 97988066--97988101 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
97988056 AAAAAAGAAA
*
97988066 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
97988084 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
97988102 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:97988953 original size:2 final size:2
Alignment explanation
Indices: 97988946--97988974 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
97988936 CGTGATGCCC
97988946 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
97988975 CATAAGTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:97989494 original size:29 final size:29
Alignment explanation
Indices: 97989452--97989583 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
97989442 AAAATTGTAC
97989452 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
97989481 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
97989510 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATAT
*
97989540 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
97989569 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
97989584 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:97989548 original size:59 final size:58
Alignment explanation
Indices: 97989452--97989583 Score: 237
Period size: 59 Copynumber: 2.3 Consensus size: 58
97989442 AAAATTGTAC
97989452 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
* *
97989510 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAACTGAAAATATAT
97989569 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
97989584 GATTCACTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 23 0.32
59 48 0.68
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:97989572 original size:88 final size:89
Alignment explanation
Indices: 97989422--97989583 Score: 263
Period size: 88 Copynumber: 1.8 Consensus size: 89
97989412 GACAAGATTG
* * *
97989422 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
97989487 AAGTGTGCGAACTGAAAATATATA
66 AAGTGTGCGAACTGAAAATATATA
* * *
97989511 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
97989575 AAGTGTGCG
66 AAGTGTGCG
97989584 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 52 0.78
89 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAACTGAAAATATATA
Found at i:97992176 original size:14 final size:15
Alignment explanation
Indices: 97992157--97992186 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
97992147 GTTTATTATA
97992157 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
97992171 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
97992186 T
1 T
97992187 CTAAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:97997672 original size:25 final size:25
Alignment explanation
Indices: 97997643--97997690 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
97997633 TTATAATATG
* * *
97997643 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
97997668 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
97997691 GTTTATAGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:97997741 original size:9 final size:9
Alignment explanation
Indices: 97997729--97997785 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
97997719 TTTGATAAAC
97997729 ATGATATGT
1 ATGATATGT
*
97997738 ATGATATGCAC
1 ATGATATG--T
*
97997749 ATGACATGT
1 ATGATATGT
*
97997758 ATGATATGCAC
1 ATGATATG--T
97997769 ATGATATGT
1 ATGATATGT
97997778 ATGATATG
1 ATGATATG
97997786 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:97997752 original size:20 final size:20
Alignment explanation
Indices: 97997727--97997797 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
97997717 ATTTTGATAA
97997727 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
97997747 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
97997767 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
97997787 ACATGAGATGT
1 ACATGATATGT
97997798 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:97997774 original size:11 final size:11
Alignment explanation
Indices: 97997738--97997792 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
97997728 CATGATATGT
97997738 ATGATATGCAC
1 ATGATATGCAC
* *
97997749 ATGACATG--T
1 ATGATATGCAC
97997758 ATGATATGCAC
1 ATGATATGCAC
*
97997769 ATGATATG--T
1 ATGATATGCAC
97997778 ATGATATGCAC
1 ATGATATGCAC
97997789 ATGA
1 ATGA
97997793 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:97997874 original size:23 final size:23
Alignment explanation
Indices: 97997844--97997962 Score: 202
Period size: 23 Copynumber: 5.1 Consensus size: 23
97997834 AGGAAGTGCA
97997844 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
97997867 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
97997891 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
97997914 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
97997937 AAAGGGCTTTTGCCCGAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
97997960 AAA
1 AAA
97997963 AGAGGCTAGG
Statistics
Matches: 91, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
23 69 0.76
24 22 0.24
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:97997911 original size:47 final size:47
Alignment explanation
Indices: 97997842--97997962 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
97997832 GGAGGAAGTG
97997842 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
97997889 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* * *
97997936 -TAAAGGGCTTTTGCCCGAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
97997963 AGAGGCTAGG
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 24 0.34
47 47 0.66
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:97997957 original size:70 final size:71
Alignment explanation
Indices: 97997844--97997983 Score: 221
Period size: 70 Copynumber: 2.0 Consensus size: 71
97997834 AGGAAGTGCA
*
97997844 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-CC
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCTCC
97997907 AGTTATT
65 AGTTATT
* * *
97997914 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTTTGCCCGAGTTATTAAAAGAGGCTAGGCCTCCA
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTCCA
97997979 GTTAT
66 GTTAT
97997984 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
70 53 0.83
71 11 0.17
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (71 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTCCA
GTTATT
Found at i:97999785 original size:49 final size:49
Alignment explanation
Indices: 97999724--97999856 Score: 187
Period size: 49 Copynumber: 2.7 Consensus size: 49
97999714 GTACATTAAA
* * *
97999724 GTCGATGTCATGTCCCAAACAGGTCTTACACTGACTTTCATATATCGAG-
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GT
* * *
97999773 GTCGATGCCATGTCCCAGACAGGTCTTACATTGGCTCTCATCTATCGGT
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGT
*
97999822 GTCGATGCCATGTCCTAGACAGGTCTTACACTGAC
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGAC
97999857 ACACAACAAG
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
48 1 0.01
49 73 0.99
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGT
Found at i:97999945 original size:48 final size:46
Alignment explanation
Indices: 97999888--97999991 Score: 127
Period size: 46 Copynumber: 2.2 Consensus size: 46
97999878 TACTAGATAG
* * *
97999888 GTCTTACACTAGCTTGTATATCCCGAGGCCGATGCATGTCCCAGACAT
1 GTCTTACACTA-ATTCT-TATCCCAAGGCCGATGCATGTCCCAGACAT
* * *
97999936 GTCTTACACTAATTCTTATCTCAATGCTGATGCATGTCCCAGACAT
1 GTCTTACACTAATTCTTATCCCAAGGCCGATGCATGTCCCAGACAT
*
97999982 GTCCTACACT
1 GTCTTACACT
97999992 GGCTCTCATA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
46 35 0.71
47 3 0.06
48 11 0.22
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (46 bp):
GTCTTACACTAATTCTTATCCCAAGGCCGATGCATGTCCCAGACAT
Found at i:98008259 original size:40 final size:39
Alignment explanation
Indices: 98008150--98008357 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 39
98008140 TCTTCGGAAT
* * *
98008150 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGATC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
* * * *
98008189 TTAACCCGGATTTGGTA-ACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT--AACACTAGCACAAATGCCTTCGGGTC
* * *
98008229 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCAGGTC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTC
* *
98008269 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGTC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
* *
98008309 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
98008349 TTAGCCCGG
1 TTAGCCCGG
98008358 GTATCATTCA
Statistics
Matches: 143, Mismatches: 20, Indels: 11
0.82 0.11 0.06
Matches are distributed among these distances:
38 1 0.01
39 3 0.02
40 137 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTC
Found at i:98013381 original size:24 final size:24
Alignment explanation
Indices: 98013348--98013394 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
98013338 ACCCAAGGGA
98013348 TTTGACACCCGAATTACGAACTCG
1 TTTGACACCCGAATTACGAACTCG
*
98013372 TTTGAGACCCGAATTACGAACTC
1 TTTGACACCCGAATTACGAACTC
98013395 AGTAGACTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (24 bp):
TTTGACACCCGAATTACGAACTCG
Found at i:98016378 original size:40 final size:40
Alignment explanation
Indices: 98016314--98016521 Score: 188
Period size: 40 Copynumber: 5.2 Consensus size: 40
98016304 TCTTCGGAAT
* ** *
98016314 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGATC
1 TTAGCCCGGATATAACAACTCGCACAATTGCCTTCGGGTC
* * *** * *
98016353 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAATTGCCTTCGGGTC
* *
98016393 TTAGCTCGGATATAACAACTCGCACGATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAATTGCCTTCGGGTC
* * * *
98016433 TTAGCCCGGATAAAATC-ACTAGCATAAATGCCTTCGGGTC
1 TTAGCCCGGATATAA-CAACTCGCACAATTGCCTTCGGGTC
* * * *
98016473 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAATTGCCTTCGGGTC
98016513 TTAGCCCGG
1 TTAGCCCGG
98016522 GTATCATTCA
Statistics
Matches: 140, Mismatches: 27, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 3 0.02
40 136 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAATTGCCTTCGGGTC
Found at i:98016441 original size:80 final size:78
Alignment explanation
Indices: 98016314--98016521 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 78
98016304 TCTTCGGAAT
* * * **** *
98016314 TTAGCCGGATATAACCACAAGCACAATTGCCTTCGGATCTTAACCCGGATTTGGTAACTTGCACA
1 TTAGCCGGATATAA-CACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATAACTAGCACA
98016379 AATGCCTTCGGGTC
65 AATGCCTTCGGGTC
* * * *
98016393 TTAGCTCGGATATAACAACTCGCACGATTGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
1 TTAGC-CGGATATAAC-ACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATAACTAGCAC
98016458 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGTC
* * *
98016473 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAG-CCGGATATAA-CACTAGCACAATTGCCTTCGGGTCTTAGCCCGG
98016522 GTATCATTCA
Statistics
Matches: 108, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
79 6 0.06
80 100 0.93
81 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (78 bp):
TTAGCCGGATATAACACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATAACTAGCACAA
ATGCCTTCGGGTC
Found at i:98020861 original size:21 final size:21
Alignment explanation
Indices: 98020835--98020906 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
98020825 GTATAAGCAA
98020835 TTTATCTACATCGATTAGTGG
1 TTTATCTACATCGATTAGTGG
* * * *
98020856 TTTATCCACA-CTGTACTAGCAGCT
1 TTTATCTACATC-G-ATTAG-TG-G
*
98020880 TTTATCTACATCGGTTAGTGG
1 TTTATCTACATCGATTAGTGG
98020901 TTTATC
1 TTTATC
98020907 CACACTGTAC
Statistics
Matches: 37, Mismatches: 9, Indels: 10
0.66 0.16 0.18
Matches are distributed among these distances:
20 1 0.03
21 16 0.43
22 5 0.14
23 4 0.11
24 10 0.27
25 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (21 bp):
TTTATCTACATCGATTAGTGG
Found at i:98020899 original size:45 final size:45
Alignment explanation
Indices: 98020835--98020976 Score: 180
Period size: 45 Copynumber: 3.2 Consensus size: 45
98020825 GTATAAGCAA
98020835 TTTATCTACATCGATTAGTGGTTTATCCACACTGTACTAGCAGCT
1 TTTATCTACATCGATTAGTGGTTTATCCACACTGTACTAGCAGCT
* *
98020880 TTTATCTACATCGGTTAGTGGTTTATCCACACTGTACTATCAGCT
1 TTTATCTACATCGATTAGTGGTTTATCCACACTGTACTAGCAGCT
* * * * * *
98020925 TTTATTTGTAC-T-AATGAGTGGTTTATCCATACCGTACTAGCAGCA
1 TTTA--TCTACATCGATTAGTGGTTTATCCACACTGTACTAGCAGCT
98020970 TTTATCT
1 TTTATCT
98020977 GCACTAATGA
Statistics
Matches: 84, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
43 2 0.02
45 77 0.92
46 1 0.01
47 4 0.05
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.40
Consensus pattern (45 bp):
TTTATCTACATCGATTAGTGGTTTATCCACACTGTACTAGCAGCT
Found at i:98020983 original size:45 final size:45
Alignment explanation
Indices: 98020851--98021002 Score: 180
Period size: 45 Copynumber: 3.4 Consensus size: 45
98020841 TACATCGATT
* ** *
98020851 AGTGGTTTATCCACACTGTACTAGCAGCTTTTATCTACA-TCGGTT
1 AGTGGTTTATCCACACTGTACTAGCAGCTTTTATCTGCACT-AATG
* * *
98020896 AGTGGTTTATCCACACTGTACTATCAGCTTTTATTTGTACTAATG
1 AGTGGTTTATCCACACTGTACTAGCAGCTTTTATCTGCACTAATG
* * *
98020941 AGTGGTTTATCCATACCGTACTAGCAGCATTTATCTGCACTAATG
1 AGTGGTTTATCCACACTGTACTAGCAGCTTTTATCTGCACTAATG
*
98020986 AGTGGTTTTATTCACAC
1 AGTGG-TTTATCCACAC
98021003 CATACTAGTA
Statistics
Matches: 90, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
45 80 0.89
46 10 0.11
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.38
Consensus pattern (45 bp):
AGTGGTTTATCCACACTGTACTAGCAGCTTTTATCTGCACTAATG
Found at i:98022445 original size:22 final size:19
Alignment explanation
Indices: 98022426--98022469 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
98022416 CATATTTAAA
98022426 ATTATTATATTTATTATTT
1 ATTATTATATTTATTATTT
*
98022445 ATTATTATATTTAAT-TTT
1 ATTATTATATTTATTATTT
98022463 ATTATTA
1 ATTATTA
98022470 ATTAAAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 10 0.42
19 14 0.58
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
ATTATTATATTTATTATTT
Found at i:98022473 original size:25 final size:25
Alignment explanation
Indices: 98022435--98022488 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
98022425 AATTATTATA
* **
98022435 TTTATTATTTATTATTATATTTAAT
1 TTTATTATTAATTAAAATATTTAAT
98022460 TTTATTATTAATTAAAATATTTAAT
1 TTTATTATTAATTAAAATATTTAAT
98022485 TTTA
1 TTTA
98022489 AAAAATATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (25 bp):
TTTATTATTAATTAAAATATTTAAT
Found at i:98024124 original size:14 final size:14
Alignment explanation
Indices: 98024105--98024134 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
98024095 TTTTACCCTG
*
98024105 AACCTTAAACCTCA
1 AACCTTAAACCCCA
98024119 AACCTTAAACCCCA
1 AACCTTAAACCCCA
98024133 AA
1 AA
98024135 TTTTGAGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
AACCTTAAACCCCA
Found at i:98024203 original size:7 final size:7
Alignment explanation
Indices: 98024180--98024245 Score: 50
Period size: 6 Copynumber: 9.6 Consensus size: 7
98024170 TTGGGTTTGG
98024180 GGTTTAA
1 GGTTTAA
*
98024187 TGATTT-A
1 -GGTTTAA
98024194 GGTTTAA
1 GGTTTAA
98024201 GGTTTAA
1 GGTTTAA
*
98024208 GGATTTAG
1 GG-TTTAA
98024216 GGTTT-A
1 GGTTTAA
*
98024222 GGATTCAA
1 GG-TTTAA
98024230 GG-TTAA
1 GGTTTAA
98024236 GG-TTAA
1 GGTTTAA
98024242 GGTT
1 GGTT
98024246 CAAAAGTTTG
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
6 17 0.36
7 17 0.36
8 13 0.28
ACGTcount: A:0.27, C:0.02, G:0.30, T:0.41
Consensus pattern (7 bp):
GGTTTAA
Found at i:98024204 original size:21 final size:22
Alignment explanation
Indices: 98024180--98024221 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
98024170 TTGGGTTTGG
*
98024180 GGTTTAATGATTTA-GGTTTAA
1 GGTTTAAGGATTTAGGGTTTAA
98024201 GGTTTAAGGATTTAGGGTTTA
1 GGTTTAAGGATTTAGGGTTTA
98024222 GGATTCAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (22 bp):
GGTTTAAGGATTTAGGGTTTAA
Found at i:98024226 original size:14 final size:14
Alignment explanation
Indices: 98024190--98024245 Score: 55
Period size: 14 Copynumber: 4.1 Consensus size: 14
98024180 GGTTTAATGA
98024190 TTTAGG-TTTAAGG
1 TTTAGGATTTAAGG
*
98024203 TTTAAGGATTTAGGG
1 TTT-AGGATTTAAGG
*
98024218 TTTAGGATTCAAGG
1 TTTAGGATTTAAGG
*
98024232 TTAAGG--TTAAGG
1 TTTAGGATTTAAGG
98024244 TT
1 TT
98024246 CAAAAGTTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
12 7 0.19
13 3 0.08
14 17 0.47
15 9 0.25
ACGTcount: A:0.27, C:0.02, G:0.30, T:0.41
Consensus pattern (14 bp):
TTTAGGATTTAAGG
Found at i:98025586 original size:21 final size:21
Alignment explanation
Indices: 98025557--98025600 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
98025547 CAGTTTACTG
98025557 TTAAAGTTTAGGGTTTAAGAT
1 TTAAAGTTTAGGGTTTAAGAT
*
98025578 TTAAGGTTTAGGGTTTAAGAT
1 TTAAAGTTTAGGGTTTAAGAT
98025599 TT
1 TT
98025601 TTAAAGTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (21 bp):
TTAAAGTTTAGGGTTTAAGAT
Found at i:98025743 original size:9 final size:9
Alignment explanation
Indices: 98025729--98025880 Score: 78
Period size: 9 Copynumber: 16.1 Consensus size: 9
98025719 TAAATTTTAT
98025729 TAAAAATTA
1 TAAAAATTA
*
98025738 TAAAAATCGA
1 TAAAAAT-TA
98025748 -AAAAATTA
1 TAAAAATTA
*
98025756 TAAAAATTG
1 TAAAAATTA
*
98025765 TAAAATTTTA
1 TAAAA-ATTA
*
98025775 TAAAAATCA
1 TAAAAATTA
98025784 TAAAATATTA
1 TAAAA-ATTA
98025794 T-AAAATATA
1 TAAAAAT-TA
*
98025803 TAGAAATATA
1 TAAAAAT-TA
*
98025813 GAAAAAATTAA
1 -TAAAAATT-A
*
98025824 AAAAAATTA
1 TAAAAATTA
*
98025833 T--AAATTCG
1 TAAAAATT-A
98025841 TAAGAAAATTA
1 T-A-AAAATTA
* *
98025852 TAAAAAATG
1 TAAAAATTA
*
98025861 TAAAGAAATA
1 TAAA-AATTA
98025871 TAAAAATTA
1 TAAAAATTA
98025880 T
1 T
98025881 TGTGCCAAAA
Statistics
Matches: 111, Mismatches: 18, Indels: 28
0.71 0.11 0.18
Matches are distributed among these distances:
7 5 0.05
8 4 0.04
9 53 0.48
10 37 0.33
11 7 0.06
12 5 0.05
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (9 bp):
TAAAAATTA
Found at i:98025753 original size:18 final size:18
Alignment explanation
Indices: 98025730--98025798 Score: 77
Period size: 19 Copynumber: 3.7 Consensus size: 18
98025720 AAATTTTATT
98025730 AAAAATTATAAAAATCGA
1 AAAAATTATAAAAATCGA
*
98025748 AAAAATTATAAAAATTGTA
1 AAAAATTATAAAAATCG-A
**
98025767 AAATTTTATAAAAATC-A
1 AAAAATTATAAAAATCGA
98025784 TAAAATATTATAAAA
1 -AAAA-ATTATAAAA
98025799 TATATAGAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
17 1 0.02
18 19 0.45
19 22 0.52
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (18 bp):
AAAAATTATAAAAATCGA
Found at i:98026139 original size:19 final size:20
Alignment explanation
Indices: 98026107--98026151 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
98026097 TTTTTAAAAA
98026107 TTTTATGAAAATTTAATACT
1 TTTTATGAAAATTTAATACT
* * *
98026127 TTTTAT-AACATTTATTGCT
1 TTTTATGAAAATTTAATACT
98026146 TTTTAT
1 TTTTAT
98026152 TTGTTATCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (20 bp):
TTTTATGAAAATTTAATACT
Found at i:98026530 original size:92 final size:92
Alignment explanation
Indices: 98026268--98026546 Score: 287
Period size: 96 Copynumber: 3.0 Consensus size: 92
98026258 CAATCAAAGG
* ** *
98026268 GCCTTTTTTATGCATTTTGACAGTTCAAGTATCCAATTGAGCACAAAAAAAAAAGGGAAGCAAGG
1 GCCTTTTTTATGCATTTTGAAAGTTCAAGTATCCAATTGAGTGCAAAAAAAAAA-AGAAG---GG
* * * *
98026333 GCTTAACTA-CTTATTTTGAAAAAAATTGAGG
62 GCTTCA-TAGCTTTTTTTGAAAAAATTTGAGA
* ** *
98026364 GCCTTTTTTATGCAATTTGAAAGTTCAAGTATCCAATTGAGTGC-AAAAAATGAAGCAACGGG--
1 GCCTTTTTTATGCATTTTGAAAGTTCAAGTATCCAATTGAGTGCAAAAAAAAAAAG-AAGGGGCT
* * *
98026426 TCAATGGCTTTTTTTGAAAAAGTTTGATA
65 TC-ATAGCTTTTTTTGAAAAAATTTGAGA
* *
98026455 GCCTTTTTGATGCATTTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAAAAAGAAGGGGCT
1 GCCTTTTTTATGCA-TTTTGAAAGTTCAAGTATCCAATTGAGTGCAAAAAAAAAAAGAAGGGGCT
* *
98026520 TCATTGTTTTTTTTGAAAAAATTTGAG
65 TCATAGCTTTTTTTGAAAAAATTTGAG
98026547 GGATTTTTAC
Statistics
Matches: 151, Mismatches: 25, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
90 2 0.01
91 31 0.21
92 36 0.24
93 30 0.20
94 3 0.02
95 9 0.06
96 40 0.26
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (92 bp):
GCCTTTTTTATGCATTTTGAAAGTTCAAGTATCCAATTGAGTGCAAAAAAAAAAAGAAGGGGCTT
CATAGCTTTTTTTGAAAAAATTTGAGA
Found at i:98026554 original size:92 final size:91
Alignment explanation
Indices: 98026265--98026554 Score: 280
Period size: 92 Copynumber: 3.1 Consensus size: 91
98026255 TAACAATCAA
* ** *
98026265 AGGGCCTTTTTTATGCATTTTGACAGTTCAAGTATCCAATTGAGCACAAAAAAAAAAGGGAAGCA
1 AGGG-CTTTTTTATGCATTTTGAAAGTTCAAGTATCCAATTGAGTGCAAAAAAAAAA-AGAAG--
* * * * *
98026330 AGGGCTTAACTACTTATTTTGAAAAAAATTG
62 -GGGCTTCATTGCTTTTTTTGAAAAAATTTG
* ** *
98026361 AGGGCCTTTTTTATGCAATTTGAAAGTTCAAGTATCCAATTGAGTGC-AAAAAATGAAGCAACGG
1 AGGG-CTTTTTTATGCATTTTGAAAGTTCAAGTATCCAATTGAGTGCAAAAAAAAAAAG-AAGGG
* *
98026425 G--TCAATGGCTTTTTTTGAAAAAGTTTG
64 GCTTC-ATTGCTTTTTTTGAAAAAATTTG
* * * *
98026452 ATAGCCTTTTTGATGCATTTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAAAAAGAAGGG
1 A-GGGCTTTTTTATGCA-TTTTGAAAGTTCAAGTATCCAATTGAGTGCAAAAAAAAAAAGAAGGG
*
98026517 GCTTCATTGTTTTTTTTGAAAAAATTTG
64 GCTTCATTGCTTTTTTTGAAAAAATTTG
*
98026545 AGGGATTTTT
1 AGGGCTTTTT
98026555 ACACCCTTAA
Statistics
Matches: 158, Mismatches: 29, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
90 1 0.01
91 29 0.18
92 43 0.27
93 30 0.19
94 3 0.02
95 9 0.06
96 43 0.27
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (91 bp):
AGGGCTTTTTTATGCATTTTGAAAGTTCAAGTATCCAATTGAGTGCAAAAAAAAAAAGAAGGGGC
TTCATTGCTTTTTTTGAAAAAATTTG
Found at i:98028604 original size:25 final size:25
Alignment explanation
Indices: 98028576--98028640 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
98028566 AAGCTCTTCC
98028576 GAGCTGAATAAT-GGTAAGCTCATAT
1 GAGCTGAAT-ATCGGTAAGCTCATAT
*
98028601 GAGCTGAGTATCGGTAAGCTCATAT
1 GAGCTGAATATCGGTAAGCTCATAT
*
98028626 G-GATGAA-ATCGGTAA
1 GAGCTGAATATCGGTAA
98028641 CCCTAATGAC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 8 0.22
24 6 0.17
25 22 0.61
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (25 bp):
GAGCTGAATATCGGTAAGCTCATAT
Found at i:98029513 original size:16 final size:17
Alignment explanation
Indices: 98029477--98029513 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
98029467 ATTTTGTTTC
98029477 TTTAATTATTAATCTTA
1 TTTAATTATTAATCTTA
*
98029494 -TTAATTATTTA-CTTA
1 TTTAATTATTAATCTTA
98029509 TTTAA
1 TTTAA
98029514 CCTTTATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTAATTATTAATCTTA
Found at i:98034570 original size:93 final size:93
Alignment explanation
Indices: 98034457--98034628 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
98034447 GCCCATAAGT
* *
98034457 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
98034522 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
98034550 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
98034615 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
98034629 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:98034624 original size:46 final size:46
Alignment explanation
Indices: 98034449--98034624 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
98034439 TGTAACCCGC
* * * *
98034449 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
98034495 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
98034545 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
98034588 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
98034625 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 67 0.60
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:98034643 original size:46 final size:45
Alignment explanation
Indices: 98034500--98034643 Score: 148
Period size: 46 Copynumber: 3.1 Consensus size: 45
98034490 CGCATCCATA
* *
98034500 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
98034548 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
98034593 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
98034639 AGTGA
1 AGTGA
98034644 CATGTCACTT
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.47
47 31 0.40
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:98044239 original size:14 final size:14
Alignment explanation
Indices: 98044222--98044248 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
98044212 ACTTCTTGCA
98044222 AAATTCCTCTTGGG
1 AAATTCCTCTTGGG
98044236 AAATTCCTCTTGG
1 AAATTCCTCTTGG
98044249 AAAAACTCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (14 bp):
AAATTCCTCTTGGG
Found at i:98054534 original size:21 final size:19
Alignment explanation
Indices: 98054508--98054546 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
98054498 TAATTAAGGG
98054508 ATGATTTTTGTTCTGTTTTTA
1 ATGATTTTT-TT-TGTTTTTA
98054529 ATGATTTTTTTTGTTTTT
1 ATGATTTTTTTTGTTTTT
98054547 GAGATCGCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
20 2 0.11
21 9 0.50
ACGTcount: A:0.13, C:0.03, G:0.13, T:0.72
Consensus pattern (19 bp):
ATGATTTTTTTTGTTTTTA
Found at i:98054667 original size:21 final size:20
Alignment explanation
Indices: 98054643--98054681 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
98054633 ATGTGTTTTG
98054643 ATGTTTGATGATAGATTATGA
1 ATGTTTGATGATAG-TTATGA
98054664 ATGTTTGATGATAGTTAT
1 ATGTTTGATGATAGTTAT
98054682 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (20 bp):
ATGTTTGATGATAGTTATGA
Found at i:98054691 original size:21 final size:21
Alignment explanation
Indices: 98054643--98054689 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
98054633 ATGTGTTTTG
*
98054643 ATGTTTGATGATAGATTATGA
1 ATGTTTGATGATAGATTATCA
98054664 ATGTTTGATGATAG-TTATACA
1 ATGTTTGATGATAGATTAT-CA
98054685 A-GTTT
1 ATGTTT
98054690 TGTTAAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (21 bp):
ATGTTTGATGATAGATTATCA
Found at i:98054775 original size:29 final size:29
Alignment explanation
Indices: 98054710--98054775 Score: 66
Period size: 28 Copynumber: 2.3 Consensus size: 29
98054700 TTTTTAATAA
*
98054710 AAATGCAAATTAAGGATTAAATTGTGAAAT
1 AAATG-AAATTAAGGATTAAAATGTGAAAT
*
98054740 --GTGGAAACTTAAGG-TTAAAATGTGAAAT
1 AAAT-GAAA-TTAAGGATTAAAATGTGAAAT
98054768 AAATGAAA
1 AAATGAAA
98054776 AATATGGGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 9
0.71 0.07 0.22
Matches are distributed among these distances:
28 17 0.59
29 11 0.38
30 1 0.03
ACGTcount: A:0.50, C:0.03, G:0.20, T:0.27
Consensus pattern (29 bp):
AAATGAAATTAAGGATTAAAATGTGAAAT
Found at i:98055721 original size:21 final size:21
Alignment explanation
Indices: 98055697--98055761 Score: 130
Period size: 21 Copynumber: 3.1 Consensus size: 21
98055687 CATGTTAAGA
98055697 TTGAGTTTATTTCATACGAGC
1 TTGAGTTTATTTCATACGAGC
98055718 TTGAGTTTATTTCATACGAGC
1 TTGAGTTTATTTCATACGAGC
98055739 TTGAGTTTATTTCATACGAGC
1 TTGAGTTTATTTCATACGAGC
98055760 TT
1 TT
98055762 ACTAAGCTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.23, C:0.14, G:0.18, T:0.45
Consensus pattern (21 bp):
TTGAGTTTATTTCATACGAGC
Found at i:98058994 original size:16 final size:16
Alignment explanation
Indices: 98058975--98059005 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98058965 CTTCTTCACT
98058975 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
98058991 TACTTACTTACTTAA
1 TACTCACTTACTTAA
98059006 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:98059011 original size:20 final size:20
Alignment explanation
Indices: 98058972--98059011 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
98058962 AAACTTCTTC
* *
98058972 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
98058992 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
98059012 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:98059386 original size:55 final size:53
Alignment explanation
Indices: 98059266--98059452 Score: 182
Period size: 55 Copynumber: 3.5 Consensus size: 53
98059256 TCCATATCTC
98059266 GACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTT
1 GACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTT
* * * * * *
98059319 GGCATGGTCTTACATAGG-A-CATTTGCCTTATAGTAACTTATCAATGTCATGTCTT
1 GACATGGTCTTACAT-GGTATC-CTTGCCTTAT-G-AACTCACCAATGCCATGCCTT
* * * * *
98059374 GACATGGTCTTACATGATATCCTTGACTTA-GAAACCTTACCAATTGTCATTCCTT
1 GACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA-TGCCATGCCTT
*
98059429 GGCATGGTCTTACATGGTATCCTT
1 GACATGGTCTTACATGGTATCCTT
98059453 AAACCCTAAT
Statistics
Matches: 110, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
52 1 0.01
53 27 0.25
54 11 0.10
55 70 0.64
56 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (53 bp):
GACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTT
Found at i:98061075 original size:54 final size:55
Alignment explanation
Indices: 98060986--98061092 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 55
98060976 GGACCTTTGT
* * *
98060986 CTTATAGTAACTCATCAATGCCATGTCTTAACATGGTCTTACATGATTTCCTTGC
1 CTTATAGTAACTCATCAATACCATGCCTTAACATGGTCTTACATGATATCCTTGC
* **
98061041 CTTATAG-AACTTATCAATACCATGCCTTGGCATGGTCTTACATGATATCCTT
1 CTTATAGTAACTCATCAATACCATGCCTTAACATGGTCTTACATGATATCCTT
98061093 ATCATACCAA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
54 39 0.85
55 7 0.15
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.37
Consensus pattern (55 bp):
CTTATAGTAACTCATCAATACCATGCCTTAACATGGTCTTACATGATATCCTTGC
Found at i:98061187 original size:47 final size:47
Alignment explanation
Indices: 98061071--98061192 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
98061061 CATGCCTTGG
* * * *
98061071 CATGGTCTTACATGATATCCTTATCATACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
98061118 TATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
98061165 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
98061193 GTGCCAATGC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:98061983 original size:31 final size:30
Alignment explanation
Indices: 98061948--98062005 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
98061938 CTAACTCAAA
98061948 CTTTAGAAAAATTACAATTTTGCCCCTAAAT
1 CTTTA-AAAAATTACAATTTTGCCCCTAAAT
* * * *
98061979 CTTTACAGAATTACGATTTTTCCCCTA
1 CTTTAAAAAATTACAATTTTGCCCCTA
98062006 GGCTCGGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 18 0.78
31 5 0.22
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (30 bp):
CTTTAAAAAATTACAATTTTGCCCCTAAAT
Found at i:98073260 original size:29 final size:29
Alignment explanation
Indices: 98073220--98073322 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 29
98073210 GTGACGAAAT
* **
98073220 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATAAA
* * *
98073249 TGGCACTAAGTGTGCGAGTTTGGACTAAA
1 TGGCACTAAGTGTGCGAGCTTGAAATAAA
* *
98073278 TGGCACTATGTGTGC-AGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGA-GCTTGAAAT-AAA
98073307 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
98073323 TGATCGAGTA
Statistics
Matches: 59, Mismatches: 12, Indels: 5
0.78 0.16 0.07
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATAAA
Found at i:98081252 original size:29 final size:29
Alignment explanation
Indices: 98081212--98081314 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 29
98081202 GTGACGAAAT
* **
98081212 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATAAA
* * *
98081241 TGGCACTAAGTGTGCGAGTTTGGACTAAA
1 TGGCACTAAGTGTGCGAGCTTGAAATAAA
* *
98081270 TGGCACTATGTGTGC-AGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGA-GCTTGAAAT-AAA
98081299 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
98081315 TGATCGAGTA
Statistics
Matches: 59, Mismatches: 12, Indels: 5
0.78 0.16 0.07
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATAAA
Found at i:98088373 original size:20 final size:20
Alignment explanation
Indices: 98088348--98088395 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
98088338 ATTAGGATAT
98088348 ATTTTGTTCAATAATTGGAA
1 ATTTTGTTCAATAATTGGAA
98088368 ATTTTGTTCAATAATTGGAA
1 ATTTTGTTCAATAATTGGAA
98088388 ATTTTGTT
1 ATTTTGTT
98088396 AAGTATGCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.31, C:0.04, G:0.15, T:0.50
Consensus pattern (20 bp):
ATTTTGTTCAATAATTGGAA
Found at i:98092761 original size:42 final size:42
Alignment explanation
Indices: 98092713--98092801 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
98092703 GCTCTCACTT
*
98092713 GCTTCTGATTAACTCAT-AT-GAGTTTCTGTTCAGCTCTTTTGA
1 GCTTCTGATTAAC-CATAATGGAGTTTC-GTTCAGCTCTTATGA
* * *
98092755 GCTTCTGTTTAACCCTAATGGATTTTCGTTCAGCTCTTATGA
1 GCTTCTGATTAACCATAATGGAGTTTCGTTCAGCTCTTATGA
98092797 GCTTC
1 GCTTC
98092802 CGTTCAACCC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
41 2 0.05
42 33 0.80
43 6 0.15
ACGTcount: A:0.18, C:0.21, G:0.17, T:0.44
Consensus pattern (42 bp):
GCTTCTGATTAACCATAATGGAGTTTCGTTCAGCTCTTATGA
Found at i:98092811 original size:42 final size:43
Alignment explanation
Indices: 98092735--98092837 Score: 129
Period size: 42 Copynumber: 2.4 Consensus size: 43
98092725 CTCATATGAG
* * *
98092735 TTTCTGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTAATGGAT
1 TTTCTGTTCAGCTCTTATGAGCTTCCGTTCAACCCTAATGGAT
* *
98092778 TTTC-GTTCAGCTCTTATGAGCTTCCGTTCAACCCTTATGG-G
1 TTTCTGTTCAGCTCTTATGAGCTTCCGTTCAACCCTAATGGAT
* *
98092819 TTTCTGTTTAGCACTTATG
1 TTTCTGTTCAGCTCTTATG
98092838 TACTTCTATT
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
41 4 0.08
42 44 0.85
43 4 0.08
ACGTcount: A:0.16, C:0.22, G:0.17, T:0.45
Consensus pattern (43 bp):
TTTCTGTTCAGCTCTTATGAGCTTCCGTTCAACCCTAATGGAT
Found at i:98096029 original size:46 final size:45
Alignment explanation
Indices: 98095962--98096050 Score: 124
Period size: 46 Copynumber: 2.0 Consensus size: 45
98095952 ATATATATAC
* * *
98095962 ATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCT
1 ATCTCATACACATCTCACATTAGCCA-TCGGCCTTACCACATATCT
* *
98096008 ATCTCATACACATTTCGCATTAGCCATCGGCCTTACCACATAT
1 ATCTCATACACATCTCACATTAGCCATCGGCCTTACCACATAT
98096051 ATACATGTTC
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
45 15 0.39
46 23 0.61
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (45 bp):
ATCTCATACACATCTCACATTAGCCATCGGCCTTACCACATATCT
Found at i:98096105 original size:47 final size:47
Alignment explanation
Indices: 98096025--98096153 Score: 206
Period size: 47 Copynumber: 2.8 Consensus size: 47
98096015 ACACATTTCG
* * * **
98096025 CATTAGCCA-TCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
98096071 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
98096118 CATTGGCCATTCGGCCTTATCACACATACGCATGTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTT
98096154 TGGCCATTCG
Statistics
Matches: 77, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 8 0.10
47 69 0.90
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:98096157 original size:33 final size:33
Alignment explanation
Indices: 98096120--98096186 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
98096110 ATTCATCACA
98096120 TTGGCCATTCGGCCTTATCACACATACGCATGT
1 TTGGCCATTCGGCCTTATCACACATACGCATGT
*
98096153 TTGGCCATTCGGCCTTATCACACATACTCATGT
1 TTGGCCATTCGGCCTTATCACACATACGCATGT
98096186 T
1 T
98096187 CACATTCATC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.33
Consensus pattern (33 bp):
TTGGCCATTCGGCCTTATCACACATACGCATGT
Found at i:98096160 original size:80 final size:80
Alignment explanation
Indices: 98096073--98096233 Score: 304
Period size: 80 Copynumber: 2.0 Consensus size: 80
98096063 ATTCATCACA
98096073 TTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
1 TTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
*
98096138 CACACATACGCATGT
66 CACACATACACATGT
*
98096153 TTGGCCATTCGGCCTTATCACACATACTCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
1 TTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
98096218 CACACATACACATGT
66 CACACATACACATGT
98096233 T
1 T
98096234 CACATTCATC
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.24, C:0.31, G:0.14, T:0.31
Consensus pattern (80 bp):
TTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
CACACATACACATGT
Found at i:98096191 original size:47 final size:47
Alignment explanation
Indices: 98096153--98096272 Score: 222
Period size: 47 Copynumber: 2.6 Consensus size: 47
98096143 ATACGCATGT
*
98096153 TTGGCCATTCGGCCTTATCACACATACTCATGTTCACATTCATCACA
1 TTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
98096200 TTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
1 TTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
*
98096247 TTGGCCATTCGGCCTTATCACGCATA
1 TTGGCCATTCGGCCTTATCACACATA
98096273 TATATACAGG
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.25, C:0.32, G:0.12, T:0.31
Consensus pattern (47 bp):
TTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
Found at i:98096194 original size:127 final size:126
Alignment explanation
Indices: 98096030--98096272 Score: 425
Period size: 127 Copynumber: 1.9 Consensus size: 126
98096020 TTTCGCATTA
*
98096030 GCCATCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 GCCATCGGCCTTACCACACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
*
98096095 CATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTTG
66 CATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTTG
*
98096156 GCCATTCGGCCTTATCACACATACT-CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
1 GCCA-TCGGCCTTACCACACATA-TACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
*
98096220 CACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATA
64 CACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATA
98096273 TATATACAGG
Statistics
Matches: 111, Mismatches: 4, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
126 4 0.04
127 106 0.95
128 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.13, T:0.30
Consensus pattern (126 bp):
GCCATCGGCCTTACCACACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
CATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTTG
Found at i:98103672 original size:15 final size:15
Alignment explanation
Indices: 98103652--98103681 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
98103642 TTTAATCCTT
*
98103652 TATAAATTATAAAAA
1 TATAAACTATAAAAA
98103667 TATAAACTATAAAAA
1 TATAAACTATAAAAA
98103682 ATTAAAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
TATAAACTATAAAAA
Found at i:98104792 original size:26 final size:27
Alignment explanation
Indices: 98104763--98104814 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
98104753 TTTATTTTTC
98104763 TATTTCTAA-AAATAAAT-TTCTCAATA
1 TATTTCTAAGAAAT-AATCTTCTCAATA
98104789 TATTTCTAATGAAATAATCTTCTCAA
1 TATTTCTAA-GAAATAATCTTCTCAA
98104815 CCAAATTCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 9 0.39
27 3 0.13
28 11 0.48
ACGTcount: A:0.42, C:0.13, G:0.02, T:0.42
Consensus pattern (27 bp):
TATTTCTAAGAAATAATCTTCTCAATA
Found at i:98105049 original size:57 final size:58
Alignment explanation
Indices: 98104976--98105101 Score: 166
Period size: 57 Copynumber: 2.2 Consensus size: 58
98104966 TTTTTAGGTC
* * * *
98104976 ATTTTCATTGTCATTTTAGATAGAACCACATTCATTTCCAAATGATTTC-ATTTCTCT-
1 ATTTTCATTTTCATTTTAGAGAAAACCACATTCATTTCCAAATG-TTTCTATTTATCTA
* * *
98105033 ATTTTCGTTTTCATTTTAGAGAAAACCATATTTATTTCCAAATGTTTCTATTTATCTA
1 ATTTTCATTTTCATTTTAGAGAAAACCACATTCATTTCCAAATGTTTCTATTTATCTA
98105091 ATTTTCATTTT
1 ATTTTCATTTT
98105102 GAAGAAAACC
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
56 4 0.07
57 45 0.76
58 10 0.17
ACGTcount: A:0.28, C:0.16, G:0.06, T:0.50
Consensus pattern (58 bp):
ATTTTCATTTTCATTTTAGAGAAAACCACATTCATTTCCAAATGTTTCTATTTATCTA
Found at i:98108655 original size:40 final size:40
Alignment explanation
Indices: 98108563--98108713 Score: 176
Period size: 40 Copynumber: 3.8 Consensus size: 40
98108553 CGAATGGTAT
* * * *
98108563 CCGGGCTAAGTCCCGAAGCCTTTTGTGCTAAGTGACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
98108604 CTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
98108644 CCGGGTTAAGTCTCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
98108684 CCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
98108714 ATCACTATAA
Statistics
Matches: 93, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 69 0.74
41 24 0.26
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:98116425 original size:39 final size:39
Alignment explanation
Indices: 98116362--98116535 Score: 178
Period size: 38 Copynumber: 4.5 Consensus size: 39
98116352 CGAATGGTAT
*
98116362 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * *
98116401 CCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * *
98116439 CCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* *
98116477 TCCGGGCTAATTCCCGAAGGCAATTTGTGCGAA-TCACTATAA
1 -CCGGGCTAAGTCCCGAAGGC-ATTTGTGC-AAGTTACTA-AA
*
98116519 CCGGGC-ATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
98116536 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
38 52 0.45
39 26 0.22
40 17 0.15
41 18 0.16
42 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:98117063 original size:17 final size:18
Alignment explanation
Indices: 98117041--98117077 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
98117031 TTGTTTTCAA
98117041 GTAC-TTTTGTGATGTAT
1 GTACTTTTTGTGATGTAT
98117058 GTACTTTTTGTGATGTAT
1 GTACTTTTTGTGATGTAT
98117076 GT
1 GT
98117078 GTGTACGGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.16, C:0.05, G:0.24, T:0.54
Consensus pattern (18 bp):
GTACTTTTTGTGATGTAT
Found at i:98119225 original size:40 final size:40
Alignment explanation
Indices: 98119140--98119290 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
98119130 AATTGAATGA
* * * **
98119140 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
98119180 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
98119221 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
98119260 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
98119291 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:98119304 original size:40 final size:40
Alignment explanation
Indices: 98119177--98119306 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
98119167 ATGCTGGAAA
* * *
98119177 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
98119217 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
98119257 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
98119297 TTATATCCGG
1 TTATATCCGG
98119307 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:98127256 original size:40 final size:40
Alignment explanation
Indices: 98127129--98127258 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
98127119 ATGCTGGAAA
* *
98127129 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
98127169 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
98127209 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
98127249 TTATATCCGG
1 TTATATCCGG
98127259 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:98130790 original size:41 final size:40
Alignment explanation
Indices: 98130636--98130803 Score: 221
Period size: 40 Copynumber: 4.2 Consensus size: 40
98130626 GGGCACATAG
* *
98130636 CCCGG-TTATAGTAATTCGCACAAATGTCTTCGGGACTTAA
1 CCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAA
* * *
98130676 CCCGGATTTGGTAACTCGTACAAATGCCTTCGGGAATTAA
1 CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
*
98130716 CCCGGATTTAGTAACTCGCACAAATTCCTTCGGGACTTAA
1 CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
* * * *
98130756 CCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAG
1 CCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAA
98130797 CCCGGAT
1 CCCGGAT
98130804 ACCATTCGAA
Statistics
Matches: 112, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
40 82 0.73
41 30 0.27
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
Found at i:98131522 original size:2 final size:2
Alignment explanation
Indices: 98131515--98131544 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
98131505 ATGTGCAAAC
98131515 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
98131545 GTGTGCAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:98135303 original size:46 final size:46
Alignment explanation
Indices: 98135236--98135411 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
98135226 TATTTGGGCA
*
98135236 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
98135282 TCCGAACTCGTTGAGTTGAGTCCAAGTTCA-TGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* * * *
98135327 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTATGAATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
98135375 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98135412 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
45 2 0.02
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:98135391 original size:93 final size:93
Alignment explanation
Indices: 98135232--98135404 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
98135222 GGGATATTTG
* * *
98135232 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGTGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGAATGTGAACGCCCGAACTCGTTGAG
98135297 TTGAGTCCAAGTTCATGAGATGTAACTA
66 TTGAGTCCAAGTTCATGAGATGTAACTA
* ** * *
98135325 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTATGAATGTGAACGCCCGAGCTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGAATGTGAACGCCCGAACTCGTTGAG
*
98135390 TTGAGTCCGAGTTCA
66 TTGAGTCCAAGTTCA
98135405 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGAATGTGAACGCCCGAACTCGTTGAG
TTGAGTCCAAGTTCATGAGATGTAACTA
Found at i:98139091 original size:37 final size:36
Alignment explanation
Indices: 98139040--98139126 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
98139030 TACGAAGTCT
98139040 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
*
98139076 GTACCCGGACGTAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
98139113 TCACCCGGAACATA
1 T-ACCCGG-ACATA
98139127 TTTCTAAGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.89
38 4 0.09
ACGTcount: A:0.25, C:0.33, G:0.21, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:98139255 original size:49 final size:49
Alignment explanation
Indices: 98139195--98139458 Score: 465
Period size: 49 Copynumber: 5.4 Consensus size: 49
98139185 TTTACCACAT
* *
98139195 ATATATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
98139244 ATATGTATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
98139293 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
98139342 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
98139391 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
98139440 ATATGTATACATTTTCACA
1 ATATATATACATTTTCACA
98139459 AATTTTGATA
Statistics
Matches: 208, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 208 1.00
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:98146752 original size:30 final size:30
Alignment explanation
Indices: 98146716--98146775 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
98146706 TTCCCGAGCC
*
98146716 TAGGGGCAAAAGTGCAATTATGCAAAAGTT
1 TAGGGGCAAAAATGCAATTATGCAAAAGTT
* * *
98146746 TAGGGGCAAAAATGGAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGCAATTATGCAAAAGTT
98146776 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.10, G:0.27, T:0.25
Consensus pattern (30 bp):
TAGGGGCAAAAATGCAATTATGCAAAAGTT
Found at i:98147334 original size:93 final size:93
Alignment explanation
Indices: 98147174--98147347 Score: 242
Period size: 93 Copynumber: 1.9 Consensus size: 93
98147164 AGGATATTTG
* * ** *
98147174 GGCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCCTTGAGTTGAGTCCCAGTTCACTGATGGATGCGAAACTCCGAACTCGTTCAG
98147239 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
* * ** *
98147267 GGCATCTGAGCTCCTTGAGTTGAGTCTGAGTTCACTGATGGATGCGAACACT-CGAGCTCGTTCA
1 GGCATCCGAACTCCTTGAGTTGAGTCCCAGTTCACTGATGGATGCGAA-ACTCCGAACTCGTTCA
98147331 GTTGAGTCCGAGTTCAT
65 GTTGAGTCCGAGTTCAT
98147348 TTATGGACGG
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
93 69 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCCTTGAGTTGAGTCCCAGTTCACTGATGGATGCGAAACTCCGAACTCGTTCAG
TTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:98147354 original size:46 final size:46
Alignment explanation
Indices: 98147184--98147346 Score: 156
Period size: 46 Copynumber: 3.5 Consensus size: 46
98147174 GGCATCCGAA
* * ** *
98147184 CTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAA-TGTCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAACACT-CGAG
*
98147230 CTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTAGGCATCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAAC-A--C-TC-GAG
* *
98147277 CTCCTTGAGTTGAGTCTGAGTTCACTGATGGATGCGAACACTCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAACACTCGAG
*
98147323 CTCGTTCAGTTGAGTCCGAGTTCA
1 CTCGTTGAGTTGAGTCCGAGTTCA
98147347 TTTATGGACG
Statistics
Matches: 95, Mismatches: 12, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 48 0.51
47 27 0.28
48 4 0.04
50 5 0.05
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAACACTCGAG
Found at i:98153894 original size:30 final size:30
Alignment explanation
Indices: 98153836--98153895 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
98153826 TTCCCAAGCC
* **
98153836 TAGGGGCAAAAGTGTCATTATGCAAAAGTT
1 TAGGGGCAAAAATGGAATTATGCAAAAGTT
* *
98153866 TAGGGGCAAAAATGGAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGGAATTATGCAAAAGTT
98153896 CGTATTAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.37, C:0.10, G:0.27, T:0.27
Consensus pattern (30 bp):
TAGGGGCAAAAATGGAATTATGCAAAAGTT
Found at i:98159391 original size:40 final size:40
Alignment explanation
Indices: 98159317--98159532 Score: 270
Period size: 38 Copynumber: 5.6 Consensus size: 40
98159307 AACCCAAGTA
* *
98159317 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
98159356 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
98159396 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
98159436 -CTT-GGGACTTAGCCTGGATATAGTCA--AGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
98159472 CCTTCGGGACTTAGCCCGGATATAGTCACTA-CAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
98159510 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
98159533 CATCCGAATA
Statistics
Matches: 155, Mismatches: 14, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
36 7 0.05
37 3 0.02
38 67 0.43
39 20 0.13
40 57 0.37
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:98164206 original size:39 final size:39
Alignment explanation
Indices: 98164088--98164270 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
98164078 TCATTCAAAC
* * ** * **
98164088 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
98164128 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
98164168 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
98164207 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
98164246 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
98164271 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:98171043 original size:40 final size:40
Alignment explanation
Indices: 98170969--98171188 Score: 288
Period size: 40 Copynumber: 5.6 Consensus size: 40
98170959 AACCCAAGTA
* *
98170969 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
98171008 CCTTCGGGTCTTAGCCCAGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
98171048 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGTACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
98171088 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
98171128 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
98171167 CCTTC-GGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
98171189 CATCCGAATA
Statistics
Matches: 159, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
38 17 0.11
39 20 0.13
40 120 0.75
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:98178023 original size:93 final size:93
Alignment explanation
Indices: 98177863--98178034 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
98177853 GCCCATAAGT
* * *
98177863 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTTAA
1 GAACTCGGACACAACTCAACGAGCTCAGGCGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
98177928 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAACTCGGATGCCTAGTTACATCTCTC
* *
98177956 GAACTCGGACACAACTTAACGAGTTC-GGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACACAACTCAACGAGCTCAGG-CGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
98178020 ACGAATTCGGATGCC
65 ACGAACTCGGATGCC
98178035 CAAATATCCC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACACAACTCAACGAGCTCAGGCGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAACTCGGATGCCTAGTTACATCTCTC
Found at i:98178030 original size:46 final size:46
Alignment explanation
Indices: 98177855--98178023 Score: 189
Period size: 46 Copynumber: 3.7 Consensus size: 46
98177845 TGTAACCCGC
*
98177855 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACGCTCGCAT
* * * *
98177901 CCATAAGTGAACTCGGACTCAACTTAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCAT
* *** * * *
98177947 ACATCTCTCGAACTCGGACACAACTTAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
98177994 CCATAAGTGAACTCGGACTCAACTCAACGA
1 CCATAAGTGAACTCGGACTCAACTCAACGA
98178024 ATTCGGATGC
Statistics
Matches: 99, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
45 2 0.02
46 62 0.63
47 35 0.35
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:98184028 original size:46 final size:46
Alignment explanation
Indices: 98183978--98184153 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98183968 TATTTGGGCA
98183978 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98184024 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98184071 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98184117 GCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98184154 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Done.