Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 315 of 433
Found at i:98184133 original size:93 final size:93
Alignment explanation
Indices: 98183974--98184145 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98183964 TGGATATTTG
* *
98183974 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGCCGAACTCGTTGAG
98184039 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98184067 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGCCGAACTCGTTGAG
98184132 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98184146 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98187069 original size:15 final size:15
Alignment explanation
Indices: 98187049--98187117 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
98187039 GTATCTTGGG
98187049 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
98187064 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
98187079 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
98187094 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
98187109 TTTCTTTAT
1 TTTCTTTAT
98187118 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:98187118 original size:30 final size:30
Alignment explanation
Indices: 98187040--98187127 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
98187030 CATAGTATCG
* * * *
98187040 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
98187070 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
98187100 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
98187128 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:98189562 original size:46 final size:46
Alignment explanation
Indices: 98189512--98189687 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
98189502 TATTTGGGCA
98189512 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
98189558 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
98189605 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
98189651 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98189688 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:98189667 original size:93 final size:93
Alignment explanation
Indices: 98189508--98189679 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
98189498 TGGATATTTG
* *
98189508 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98189573 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98189601 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
98189666 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
98189680 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98191118 original size:26 final size:26
Alignment explanation
Indices: 98191089--98191141 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
98191079 TCAAACATGC
*
98191089 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCCCCTAGGGGT
* *
98191115 ATTTTGGTACTTTATCCCCTAGGGGT
1 ATTTAGGTAATTTATCCCCTAGGGGT
98191141 A
1 A
98191142 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCCCCTAGGGGT
Found at i:98193650 original size:46 final size:46
Alignment explanation
Indices: 98193600--98193775 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
98193590 TGGTTGAGCA
98193600 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
98193646 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
98193691 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
98193739 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98193776 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:98193756 original size:93 final size:93
Alignment explanation
Indices: 98193597--98193767 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
98193587 GGATGGTTGA
* *
98193597 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
98193662 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
98193690 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
98193755 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
98193768 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:98195193 original size:24 final size:24
Alignment explanation
Indices: 98195156--98195260 Score: 165
Period size: 24 Copynumber: 4.3 Consensus size: 24
98195146 GCCGGCCAAC
*
98195156 TCCTGCTCCTTTATCAGCTCCTAAA
1 TCCT-CTCCCTTATCAGCTCCTAAA
*
98195181 TCCTCTCCCTTATTAGCTCCTAAA
1 TCCTCTCCCTTATCAGCTCCTAAA
98195205 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCCTTATCAGCTCCTAAA
*
98195229 TCCTCTCCCTTATCAGCTCTTAAA
1 TCCTCTCCCTTATCAGCTCCTAAA
*
98195253 TCTTCTCC
1 TCCTCTCC
98195261 GACAGCCTTT
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
24 71 0.95
25 4 0.05
ACGTcount: A:0.19, C:0.39, G:0.05, T:0.37
Consensus pattern (24 bp):
TCCTCTCCCTTATCAGCTCCTAAA
Found at i:98195639 original size:26 final size:26
Alignment explanation
Indices: 98195610--98195662 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
98195600 CAGCACTCAC
98195610 AGAATTCCCGAAAATTGGGACTATCA
1 AGAATTCCCGAAAATTGGGACTATCA
98195636 AGAATTCCCGAAAATTGGGACTATCA
1 AGAATTCCCGAAAATTGGGACTATCA
98195662 A
1 A
98195663 TTCCTGTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.23
Consensus pattern (26 bp):
AGAATTCCCGAAAATTGGGACTATCA
Found at i:98205269 original size:8 final size:8
Alignment explanation
Indices: 98205252--98205286 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
98205242 TAAGAGTAGA
*
98205252 CCCATCAT
1 CCCATAAT
98205260 CCCATAAT
1 CCCATAAT
98205268 CCCATAAT
1 CCCATAAT
*
98205276 CCCATGAT
1 CCCATAAT
98205284 CCC
1 CCC
98205287 TTGATCTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.29, C:0.46, G:0.03, T:0.23
Consensus pattern (8 bp):
CCCATAAT
Found at i:98209073 original size:48 final size:48
Alignment explanation
Indices: 98208956--98209098 Score: 160
Period size: 48 Copynumber: 2.9 Consensus size: 48
98208946 GGGTCGATAA
* * * * * * * *
98208956 GATCCCATATAAGACCATATTTCGGATAAGTCATCGGCATCAATATGT
1 GATCCCATGTAAGACCATGTTTGGGATATGGCATTGGCATCAATAAGC
* * *
98209004 GTTATCCTATGTAAAACCATGTTTGGGACATGGCATTGGCATCAATAAGC
1 G--ATCCCATGTAAGACCATGTTTGGGATATGGCATTGGCATCAATAAGC
*
98209054 GATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCAATA
1 GATCCCATGTAAGACCATGTTTGGGATATGGCATTGGCATCAATA
98209099 TGAGAACATC
Statistics
Matches: 78, Mismatches: 15, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
48 41 0.53
50 37 0.47
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTTTGGGATATGGCATTGGCATCAATAAGC
Found at i:98209205 original size:48 final size:48
Alignment explanation
Indices: 98208991--98209212 Score: 166
Period size: 48 Copynumber: 4.6 Consensus size: 48
98208981 ATAAGTCATC
* * * *
98208991 GGCATCAATATGTGTTATCCTATGTAAAACCATGTTTGGGACATGGCATT
1 GGCATCAATAAGTG--ATCCCATGTAAGACCATGTCTGGGACATGGCATT
* *
98209041 GGCATCAATAAGCGATCCCATGTAAGACCATGTCTGGGATATGGCATT
1 GGCATCAATAAGTGATCCCATGTAAGACCATGTCTGGGACATGGCATT
* * * * * ** * **
98209089 GGCATCAATATGAGAACATCGTGTAAGTTCATAG-CTGGGATAT-TAACTT
1 GGCATCAATAAGTGATC-CCATGTAAGACCAT-GTCTGGGACATGGCA-TT
* **
98209138 CG-AT--ATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATT
1 GGCATCAATAAGTGATCCCATGTAAGACCATGTCTGGGACATGGCATT
* * *
98209183 GGCATCGATAAGTGGTCCCATGTAAAACCA
1 GGCATCAATAAGTGATCCCATGTAAGACCA
98209213 CATCCAGGAT
Statistics
Matches: 133, Mismatches: 31, Indels: 18
0.73 0.17 0.10
Matches are distributed among these distances:
44 1 0.01
45 21 0.16
46 10 0.08
48 66 0.50
49 22 0.17
50 13 0.10
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (48 bp):
GGCATCAATAAGTGATCCCATGTAAGACCATGTCTGGGACATGGCATT
Found at i:98217999 original size:84 final size:84
Alignment explanation
Indices: 98217901--98218070 Score: 340
Period size: 84 Copynumber: 2.0 Consensus size: 84
98217891 CCACAAAATG
98217901 AAATAAATACTAGAGAAAGACATAACAATGTTGAACATAACCCAAACAGACCAACAATACTTCCG
1 AAATAAATACTAGAGAAAGACATAACAATGTTGAACATAACCCAAACAGACCAACAATACTTCCG
98217966 TCTATTAGTATGTTTAGCA
66 TCTATTAGTATGTTTAGCA
98217985 AAATAAATACTAGAGAAAGACATAACAATGTTGAACATAACCCAAACAGACCAACAATACTTCCG
1 AAATAAATACTAGAGAAAGACATAACAATGTTGAACATAACCCAAACAGACCAACAATACTTCCG
98218050 TCTATTAGTATGTTTAGCA
66 TCTATTAGTATGTTTAGCA
98218069 AA
1 AA
98218071 TGTTCTCATA
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 86 1.00
ACGTcount: A:0.46, C:0.19, G:0.12, T:0.24
Consensus pattern (84 bp):
AAATAAATACTAGAGAAAGACATAACAATGTTGAACATAACCCAAACAGACCAACAATACTTCCG
TCTATTAGTATGTTTAGCA
Found at i:98220249 original size:21 final size:21
Alignment explanation
Indices: 98220225--98220264 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
98220215 TATACAGTTT
* *
98220225 TTCATATTTCCTTTACAAATA
1 TTCACATTTCATTTACAAATA
*
98220246 TTCACATTTCATTTCCAAA
1 TTCACATTTCATTTACAAA
98220265 CATTGTATAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.45
Consensus pattern (21 bp):
TTCACATTTCATTTACAAATA
Found at i:98220571 original size:44 final size:43
Alignment explanation
Indices: 98220390--98220602 Score: 211
Period size: 43 Copynumber: 5.0 Consensus size: 43
98220380 CTCATACAAC
* * * *
98220390 GCCAATGTCCCAGAC-GTGGTCTTACATGAAATCAAATA-CGAA
1 GCCAATGTCCCAGACAG-GGTCTTACACGTAATCACATATCGAT
* * * *
98220432 GCCGATGTCCAAGACATGGTCCTACACGTAATCACATATCGAT
1 GCCAATGTCCCAGACAGGGTCTTACACGTAATCACATATCGAT
* * *
98220475 GCTACTGTCCCAGACAGGGTCTTACACGTAATCACATATCAAT
1 GCCAATGTCCCAGACAGGGTCTTACACGTAATCACATATCGAT
* * *
98220518 GCCACTGTCCCAGACAGGGTCTTACACGTAAATCATA-AGTGGAT
1 GCCAATGTCCCAGACAGGGTCTTACACGT-AATCACATA-TCGAT
*
98220562 GCCAATGTCCCAGAC-GTGATCTTACACGGTAA-CACATATCG
1 GCCAATGTCCCAGACAG-GGTCTTACAC-GTAATCACATATCG
98220603 GATCCTATGT
Statistics
Matches: 141, Mismatches: 23, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
42 30 0.21
43 74 0.52
44 35 0.25
45 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (43 bp):
GCCAATGTCCCAGACAGGGTCTTACACGTAATCACATATCGAT
Found at i:98220575 original size:87 final size:86
Alignment explanation
Indices: 98220390--98220602 Score: 231
Period size: 87 Copynumber: 2.5 Consensus size: 86
98220380 CTCATACAAC
* * * *
98220390 GCCAATGTCCCAGACGTGGTCTTACATGAAATCAAATA-CGAAGCCGATGTCCAAGACATGGTCC
1 GCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCGAAGCCGATGTCCAAGACAGGGTCC
98220454 TACACGTAATCACATATCGAT
66 TACACGTAATCACATATCGAT
* * *
98220475 GCTACTGTCCCAGACAG-GGTCTTACACGTAATCACATATC-AATGCC-ACTGTCCCAGACAGGG
1 GCCAATGTCCCAGAC-GTGGTCTTACACGTAATCACATATCGAA-GCCGA-TGTCCAAGACAGGG
* * *
98220537 TCTTACACGTAAATCATA-AGTGGAT
63 TCCTACACGT-AATCACATA-TCGAT
*
98220562 GCCAATGTCCCAGACGTGATCTTACACGGTAA-CACATATCG
1 GCCAATGTCCCAGACGTGGTCTTACAC-GTAATCACATATCG
98220603 GATCCTATGT
Statistics
Matches: 106, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
85 34 0.32
86 28 0.26
87 40 0.38
88 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (86 bp):
GCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCGAAGCCGATGTCCAAGACAGGGTCC
TACACGTAATCACATATCGAT
Found at i:98224748 original size:35 final size:35
Alignment explanation
Indices: 98224553--98224738 Score: 255
Period size: 35 Copynumber: 5.3 Consensus size: 35
98224543 TATAAGACCA
* **
98224553 AATATACAAGGTTCAATATATCATCACATATGGTAG
1 AATATACAA-ATTCAATATATCATCACATATGGCCG
* * **
98224589 ATTATACAAAATTCAATATATCATCACATATAGCTA
1 AATATAC-AAATTCAATATATCATCACATATGGCCG
*
98224625 AATATACAAATTCAATATACCATCACATATGGCCG
1 AATATACAAATTCAATATATCATCACATATGGCCG
*
98224660 AATATACAAATTCAATATATCATCACATATGGCCA
1 AATATACAAATTCAATATATCATCACATATGGCCG
*
98224695 AATATACAAATTCAATATATCATCACATATAGCCG
1 AATATACAAATTCAATATATCATCACATATGGCCG
*
98224730 ATTATACAA
1 AATATACAA
98224739 GGTTCATATA
Statistics
Matches: 133, Mismatches: 16, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
35 98 0.74
36 33 0.25
37 2 0.02
ACGTcount: A:0.45, C:0.18, G:0.07, T:0.30
Consensus pattern (35 bp):
AATATACAAATTCAATATATCATCACATATGGCCG
Found at i:98224748 original size:70 final size:70
Alignment explanation
Indices: 98224550--98224738 Score: 288
Period size: 70 Copynumber: 2.7 Consensus size: 70
98224540 ACCTATAAGA
* **
98224550 CCAAATATACAAGGTTCAATATATCATCACATATGGTAGATTATACAAAATTCAATATATCATCA
1 CCAAATATACAA-ATTCAATATATCATCACATATGGCCGATTATAC-AAATTCAATATATCATCA
98224615 CATATAG
64 CATATAG
* * *
98224622 CTAAATATACAAATTCAATATACCATCACATATGGCCGAATATACAAATTCAATATATCATCACA
1 CCAAATATACAAATTCAATATATCATCACATATGGCCGATTATACAAATTCAATATATCATCACA
*
98224687 TATGG
66 TATAG
*
98224692 CCAAATATACAAATTCAATATATCATCACATATAGCCGATTATACAA
1 CCAAATATACAAATTCAATATATCATCACATATGGCCGATTATACAA
98224739 GGTTCATATA
Statistics
Matches: 106, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
70 67 0.63
71 28 0.26
72 11 0.10
ACGTcount: A:0.45, C:0.19, G:0.07, T:0.29
Consensus pattern (70 bp):
CCAAATATACAAATTCAATATATCATCACATATGGCCGATTATACAAATTCAATATATCATCACA
TATAG
Found at i:98231119 original size:28 final size:28
Alignment explanation
Indices: 98231079--98231135 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
98231069 CCGAAGTATG
*
98231079 TTTCTGAAGTCTGAAGCTTCCTAGGACT
1 TTTCTAAAGTCTGAAGCTTCCTAGGACT
98231107 TTTCTAAAGTCTGAAGCTTCCTAGGACT
1 TTTCTAAAGTCTGAAGCTTCCTAGGACT
98231135 T
1 T
98231136 GCTGGTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (28 bp):
TTTCTAAAGTCTGAAGCTTCCTAGGACT
Found at i:98236507 original size:13 final size:13
Alignment explanation
Indices: 98236489--98236513 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98236479 CTCGGCAGGG
98236489 ACACGCCCGTGGC
1 ACACGCCCGTGGC
98236502 ACACGCCCGTGG
1 ACACGCCCGTGG
98236514 TCAATTACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.44, G:0.32, T:0.08
Consensus pattern (13 bp):
ACACGCCCGTGGC
Found at i:98239805 original size:25 final size:25
Alignment explanation
Indices: 98239771--98239820 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
98239761 AATTATTTCG
98239771 GCCAATACTATTGATATGAAGCAAA
1 GCCAATACTATTGATATGAAGCAAA
98239796 GCCAATACTATTGATATGAAGCAAA
1 GCCAATACTATTGATATGAAGCAAA
98239821 CTTAACCACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (25 bp):
GCCAATACTATTGATATGAAGCAAA
Found at i:98250694 original size:16 final size:16
Alignment explanation
Indices: 98250673--98250728 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
98250663 CTCGGCCCTA
98250673 TCACATATATACACCT
1 TCACATATATACACCT
*
98250689 TCACAT-TCAT-CGGCCTT
1 TCACATAT-ATAC-ACC-T
98250706 ATCACATATATACACCT
1 -TCACATATATACACCT
98250723 TCACAT
1 TCACAT
98250729 TCATCACATC
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
15 2 0.06
16 16 0.50
17 2 0.06
18 10 0.31
19 2 0.06
ACGTcount: A:0.32, C:0.32, G:0.04, T:0.32
Consensus pattern (16 bp):
TCACATATATACACCT
Found at i:98250703 original size:34 final size:34
Alignment explanation
Indices: 98250664--98250733 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
98250654 CGTTGGCCAC
98250664 TCGGCCCTATCACATATATACACCTTCACATTCA
1 TCGGCCCTATCACATATATACACCTTCACATTCA
*
98250698 TCGGCCTTATCACATATATACACCTTCACATTCA
1 TCGGCCCTATCACATATATACACCTTCACATTCA
98250732 TC
1 TC
98250734 ACATCTGCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.34, G:0.06, T:0.31
Consensus pattern (34 bp):
TCGGCCCTATCACATATATACACCTTCACATTCA
Found at i:98250723 original size:18 final size:18
Alignment explanation
Indices: 98250671--98250723 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
98250661 CACTCGGCCC
98250671 TATCACATATATACACC-
1 TATCACATATATACACCT
*
98250688 T-TCACAT-TCAT-CGGCCT
1 TATCACATAT-ATAC-ACCT
98250705 TATCACATATATACACCT
1 TATCACATATATACACCT
98250723 T
1 T
98250724 CACATTCATC
Statistics
Matches: 28, Mismatches: 2, Indels: 11
0.68 0.05 0.27
Matches are distributed among these distances:
15 2 0.07
16 10 0.36
17 2 0.07
18 12 0.43
19 2 0.07
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.34
Consensus pattern (18 bp):
TATCACATATATACACCT
Found at i:98250778 original size:49 final size:47
Alignment explanation
Indices: 98250700--98250925 Score: 362
Period size: 49 Copynumber: 4.7 Consensus size: 47
98250690 CACATTCATC
*
98250700 GGCCTTATCACATATATACACCTTCACATTCATCACATCTGCCATTA
1 GGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTA
*
98250747 GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTA
* * *
98250796 GGTCTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTC
1 GGCCTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTA
98250845 GGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTA
*
98250892 GGCCTTATCACATATATACACATTCACATTCATC
1 GGCCTTATCACATATATACACCTTCACATTCATC
98250926 GCGTAAAATC
Statistics
Matches: 165, Mismatches: 10, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
47 77 0.47
48 1 0.01
49 87 0.53
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
GGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTA
Found at i:98250811 original size:96 final size:94
Alignment explanation
Indices: 98250700--98250925 Score: 364
Period size: 96 Copynumber: 2.4 Consensus size: 94
98250690 CACATTCATC
98250700 GGCCTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGCCTTATCACATATAT
1 GGCCTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGCCTTATCAC--ATAT
*
98250764 ATACACTTTCACATTCATCACATCGGCCATTA
63 ATACACCTTCACATTCATCACATCGGCCATTA
* *
98250796 GGTCTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 GGCCTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATA
98250861 TACACCTTCACATTCATCACATCGGCCATTA
64 TACACCTTCACATTCATCACATCGGCCATTA
*
98250892 GGCCTTATCACATATATACACATTCACATTCATC
1 GGCCTTATCACATATATACACCTTCACATTCATC
98250926 GCGTAAAATC
Statistics
Matches: 122, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
94 12 0.10
96 75 0.61
97 2 0.02
98 33 0.27
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
GGCCTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
CACCTTCACATTCATCACATCGGCCATTA
Found at i:98260774 original size:40 final size:39
Alignment explanation
Indices: 98260609--98260792 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
98260599 AAATTGAATG
* * *
98260609 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
98260649 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
98260689 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
98260729 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
98260768 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
98260793 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:98260817 original size:80 final size:81
Alignment explanation
Indices: 98260649--98260837 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
98260639 GCTGGAAATT
* * * *
98260649 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
98260714 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
98260730 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
98260793 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
98260809 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
98260838 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:98269408 original size:20 final size:20
Alignment explanation
Indices: 98269383--98269420 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
98269373 GTTTATTCGC
*
98269383 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
98269403 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
98269421 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:98271079 original size:28 final size:28
Alignment explanation
Indices: 98271047--98271115 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
98271037 GCGTAGATCA
98271047 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
98271075 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
98271103 CGATA-TACCCCTA
1 CGAAATTACCCCTA
98271116 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:98277416 original size:20 final size:20
Alignment explanation
Indices: 98277391--98277428 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
98277381 GTTTATTCGC
*
98277391 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
98277411 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
98277429 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:98279078 original size:28 final size:28
Alignment explanation
Indices: 98279046--98279104 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
98279036 GCGTAGATCA
98279046 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
98279074 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
98279102 CGA
1 CGA
98279105 TATACCCTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:98291163 original size:40 final size:40
Alignment explanation
Indices: 98291041--98291156 Score: 205
Period size: 40 Copynumber: 2.9 Consensus size: 40
98291031 ATTCGGATTG
*
98291041 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
98291081 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
98291121 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
98291157 AGCTATATTC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:98291182 original size:39 final size:40
Alignment explanation
Indices: 98291045--98291182 Score: 199
Period size: 40 Copynumber: 3.5 Consensus size: 40
98291035 GGATTGATAA
*
98291045 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
98291085 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
98291125 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* **
98291165 TC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
98291183 TACTTGGTTT
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.18
40 74 0.82
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:98295786 original size:24 final size:21
Alignment explanation
Indices: 98295754--98295805 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 21
98295744 TCGGCTAAAC
98295754 CTTAAAGCACTAAGTGTGCGGATG
1 CTTAAAGCAC--A-TGTGCGGATG
98295778 CTTAAAG--CATGTGCGGATG
1 CTTAAAGCACATGTGCGGATG
98295797 CTTAAAGCA
1 CTTAAAGCA
98295806 TGAATAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
19 17 0.65
20 1 0.04
22 1 0.04
24 7 0.27
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (21 bp):
CTTAAAGCACATGTGCGGATG
Found at i:98295792 original size:19 final size:19
Alignment explanation
Indices: 98295768--98295807 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
98295758 AAGCACTAAG
98295768 TGTGCGGATGCTTAAAGCA
1 TGTGCGGATGCTTAAAGCA
98295787 TGTGCGGATGCTTAAAGCA
1 TGTGCGGATGCTTAAAGCA
98295806 TG
1 TG
98295808 AATAATATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.28
Consensus pattern (19 bp):
TGTGCGGATGCTTAAAGCA
Found at i:98298859 original size:39 final size:39
Alignment explanation
Indices: 98298815--98298894 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
98298805 TGATGCAAGA
98298815 TATCTATTTGATGTGTTCATGAATGGCTAAGAAAAATGG
1 TATCTATTTGATGTGTTCATGAATGGCTAAGAAAAATGG
98298854 TATCTATTTGATGTGTTCATGAATGGCTAAGAAAAATGG
1 TATCTATTTGATGTGTTCATGAATGGCTAAGAAAAATGG
98298893 TA
1 TA
98298895 AGTTTGGCAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (39 bp):
TATCTATTTGATGTGTTCATGAATGGCTAAGAAAAATGG
Found at i:98303336 original size:21 final size:21
Alignment explanation
Indices: 98303311--98303359 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
98303301 TCATGTAACC
98303311 CACACCACCGGTACCAACCAA
1 CACACCACCGGTACCAACCAA
*
98303332 TACACCACCGGTACCAACCAA
1 CACACCACCGGTACCAACCAA
98303353 CACACCA
1 CACACCA
98303360 TGTGGGGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.39, C:0.47, G:0.08, T:0.06
Consensus pattern (21 bp):
CACACCACCGGTACCAACCAA
Found at i:98309569 original size:28 final size:28
Alignment explanation
Indices: 98309538--98309621 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
98309528 AACTTCGATC
98309538 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
98309566 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
98309588 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
98309616 ACGTGT
1 ACGTGT
98309622 ACTGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:98309611 original size:50 final size:49
Alignment explanation
Indices: 98309482--98309665 Score: 235
Period size: 50 Copynumber: 3.7 Consensus size: 49
98309472 ATCTATTGTG
* *
98309482 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCGATAA-TT
* * * **
98309533 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-GATAATT
* *
98309583 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCGATAATT
*
98309633 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
98309666 TGCGTACCAG
Statistics
Matches: 117, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
49 31 0.26
50 47 0.40
51 39 0.33
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGATAATT
Found at i:98312333 original size:15 final size:16
Alignment explanation
Indices: 98312315--98312348 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
98312305 TCTGGTATCA
98312315 TGGATTTCTTTATT-T
1 TGGATTTCTTTATTCT
98312330 TGGATTTCTTTATTCT
1 TGGATTTCTTTATTCT
98312346 TGG
1 TGG
98312349 CTTCTCTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.12, C:0.09, G:0.18, T:0.62
Consensus pattern (16 bp):
TGGATTTCTTTATTCT
Found at i:98316545 original size:49 final size:49
Alignment explanation
Indices: 98316487--98316859 Score: 665
Period size: 49 Copynumber: 7.6 Consensus size: 49
98316477 ATGAGTGTTA
*
98316487 GATGGGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
*
98316536 GATGTGATGAAAGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
98316585 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
*
98316634 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
*
98316683 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
* *
98316732 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCA
1 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
*
98316781 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGTC
1 GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
* *
98316830 GACGTGATGAATGTGAAAGTGTATATATAT
1 GATGTGATGAATGTGAAAATGTATATATAT
98316860 ATGTGGTAAA
Statistics
Matches: 314, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 314 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (49 bp):
GATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCC
Found at i:98316983 original size:37 final size:37
Alignment explanation
Indices: 98316942--98317014 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
98316932 TTTCGGGTGA
*
98316942 GACCCGATGACTACGTGTGGAGATTATGTCCGGGTAC
1 GACCCGATGACTACATGTGGAGATTATGTCCGGGTAC
98316979 GACCCGATGACTACATGTGGAGATTATGTCCGGGTA
1 GACCCGATGACTACATGTGGAGATTATGTCCGGGTA
98317015 AGACTTCGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (37 bp):
GACCCGATGACTACATGTGGAGATTATGTCCGGGTAC
Found at i:98319373 original size:50 final size:51
Alignment explanation
Indices: 98319259--98319378 Score: 145
Period size: 51 Copynumber: 2.4 Consensus size: 51
98319249 TGAGGTCGCA
** *
98319259 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACACGTACTCGATAACTTAGATCACG
* * ** *
98319310 TGTGTAGTTCTAAGTGCAGGCTACTACATGTA-TCAGAT-GGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACACGTACTC-GATAACTTAGATCACG
98319360 TGTGTAGTACTAAGTGCAG
1 TGTGTAGTACTAAGTGCAG
98319379 CGTGTGTAGT
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
50 28 0.47
51 31 0.53
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTACACGTACTCGATAACTTAGATCACG
Found at i:98319382 original size:21 final size:21
Alignment explanation
Indices: 98319358--98319399 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
98319348 GGTTAGGTCA
98319358 CGTGTGTAGTACTAAGTGCAG
1 CGTGTGTAGTACTAAGTGCAG
98319379 CGTGTGTAGTACTAAGTGCAG
1 CGTGTGTAGTACTAAGTGCAG
98319400 GCTACTACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (21 bp):
CGTGTGTAGTACTAAGTGCAG
Found at i:98325320 original size:16 final size:16
Alignment explanation
Indices: 98325283--98325321 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
98325273 TATTTTATTA
*
98325283 ATAAATAAAATAAAAGC
1 ATAAA-AAAATAAAAAC
*
98325300 TTAAAAAAATAAAAAC
1 ATAAAAAAATAAAAAC
98325316 ATAAAA
1 ATAAAA
98325322 GGCAAAAGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.74, C:0.05, G:0.03, T:0.18
Consensus pattern (16 bp):
ATAAAAAAATAAAAAC
Found at i:98330059 original size:16 final size:16
Alignment explanation
Indices: 98330022--98330060 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
98330012 TATTTTATTA
*
98330022 ATAAATAAAATAAAAGC
1 ATAAA-AAAATAAAAAC
*
98330039 TTAAAAAAATAAAAAC
1 ATAAAAAAATAAAAAC
98330055 ATAAAA
1 ATAAAA
98330061 GGCAAAAGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.74, C:0.05, G:0.03, T:0.18
Consensus pattern (16 bp):
ATAAAAAAATAAAAAC
Found at i:98334798 original size:16 final size:16
Alignment explanation
Indices: 98334761--98334799 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
98334751 TATTTTATTA
*
98334761 ATAAATAAAATAAAAGC
1 ATAAA-AAAATAAAAAC
*
98334778 TTAAAAAAATAAAAAC
1 ATAAAAAAATAAAAAC
98334794 ATAAAA
1 ATAAAA
98334800 GGCAAAAGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.74, C:0.05, G:0.03, T:0.18
Consensus pattern (16 bp):
ATAAAAAAATAAAAAC
Found at i:98353369 original size:18 final size:17
Alignment explanation
Indices: 98353334--98353369 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
98353324 TTTACCCGTG
*
98353334 TGGGGCCCACAGGCCCA
1 TGGGGCCCACAAGCCCA
98353351 TGGGGCCCACACAGCCCA
1 TGGGGCCCACA-AGCCCA
98353369 T
1 T
98353370 TTCGACCCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.19, C:0.42, G:0.31, T:0.08
Consensus pattern (17 bp):
TGGGGCCCACAAGCCCA
Found at i:98357131 original size:35 final size:35
Alignment explanation
Indices: 98357092--98357164 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
98357082 ACACATTCTT
98357092 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
98357127 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
98357162 TAT
1 TAT
98357165 ATCACATACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:98361438 original size:40 final size:40
Alignment explanation
Indices: 98361330--98361579 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
98361320 CGGGATTTAA
* * * * *
98361330 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
98361370 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
98361410 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
98361450 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
98361490 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
98361530 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
98361570 CCGGATATAT
1 CCGGATATAT
98361580 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:98369960 original size:40 final size:38
Alignment explanation
Indices: 98369911--98370018 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
98369901 ATCACGATTT
*
98369911 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
98369951 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
98369991 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
98370019 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:98369978 original size:80 final size:80
Alignment explanation
Indices: 98369870--98370018 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
98369860 TATGGTAACC
* * * *
98369870 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
98369934 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
98369950 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
98370015 CCGG
66 CCGG
98370019 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:98377913 original size:80 final size:80
Alignment explanation
Indices: 98377829--98377977 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
98377819 TATGGTAACC
* * * *
98377829 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
98377893 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
98377909 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
98377974 CCGG
66 CCGG
98377978 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:98377919 original size:40 final size:38
Alignment explanation
Indices: 98377870--98377977 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
98377860 ATCACGATTT
*
98377870 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
98377910 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
98377950 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
98377978 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:98379796 original size:25 final size:24
Alignment explanation
Indices: 98379757--98379804 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
98379747 ATATATAAAC
* *
98379757 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAATGGTCA-TTTTA
98379782 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
98379805 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (24 bp):
CCTAGGGGCAAAATGGTCATTTTA
Found at i:98381042 original size:27 final size:27
Alignment explanation
Indices: 98381022--98381291 Score: 220
Period size: 27 Copynumber: 10.0 Consensus size: 27
98381012 AGGGTATTTT
*
98381022 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCAAGGGTAAAAC
*
98381049 AGTAATTTTGTAAATCAAGGGTGAAAC
1 AGTAATTTTGTAAATCAAGGGTAAAAC
* * * *
98381076 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTTTGTAAATCAAGGGTAAAAC
* * **
98381103 GGTAATTCTGTAAATTGAGGGTAAAAC
1 AGTAATTTTGTAAATCAAGGGTAAAAC
* * *
98381130 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCAAGGGTAAAAC
* * ** *
98381157 GGTAATTATGTAAATCGGGGGTAAAAT
1 AGTAATTTTGTAAATCAAGGGTAAAAC
* * * *
98381184 GGTAATTATGTAAATTAGGGGTAAAAC
1 AGTAATTTTGTAAATCAAGGGTAAAAC
* * *
98381211 -GATAATTCTGTAAATCGAGGGTAAAAT
1 AG-TAATTTTGTAAATCAAGGGTAAAAC
* * *
98381238 AGTAATTCTGTAAA-CTGAGGGTAAAAT
1 AGTAATTTTGTAAATC-AAGGGTAAAAC
* * **
98381265 GGTAATTCTGTAAATTGAGGGTAAAAC
1 AGTAATTTTGTAAATCAAGGGTAAAAC
98381292 GGGGGTAAAA
Statistics
Matches: 213, Mismatches: 26, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.01
27 210 0.99
28 1 0.00
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (27 bp):
AGTAATTTTGTAAATCAAGGGTAAAAC
Found at i:98381068 original size:54 final size:54
Alignment explanation
Indices: 98381021--98381290 Score: 337
Period size: 54 Copynumber: 5.0 Consensus size: 54
98381011 AAGGGTATTT
* * * * *
98381021 TAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGGTGAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
* * * *
98381075 CAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
** * *
98381129 CGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
* * * *
98381183 TGGTAATTATGTAAAT-TAGGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
* *
98381237 TAGTAATTCTGTAAA-CTGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
98381291 CGGGGGTAAA
Statistics
Matches: 186, Mismatches: 27, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 184 0.99
55 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.30
Consensus pattern (54 bp):
TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
Found at i:98381108 original size:81 final size:80
Alignment explanation
Indices: 98381023--98381292 Score: 382
Period size: 81 Copynumber: 3.3 Consensus size: 80
98381013 GGGTATTTTA
* * * * * *
98381023 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGGTGAAACAGTAATTCTATA
1 GTAATTCTGTAAATTGAGGGTAAAAC-GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
98381088 AATCGAGGGTAAAATG
65 AATCGAGGGTAAAATG
* *
98381104 GTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTA
1 GTAATTCTGTAAATTGAGGGTAAAAC-GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
*
98381169 AATCGGGGGTAAAATG
65 AATCGAGGGTAAAATG
* *
98381185 GTAATTATGTAAATT-AGGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGT
1 GTAATTCTGTAAATTGA-GGGTAAAACG-TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGT
98381249 AAA-CTGAGGGTAAAATG
64 AAATC-GAGGGTAAAATG
98381266 GTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATTGAGGGTAAAACG
98381293 GGGGTAAAAT
Statistics
Matches: 169, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
80 3 0.02
81 165 0.98
82 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.29
Consensus pattern (80 bp):
GTAATTCTGTAAATTGAGGGTAAAACGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAA
ATCGAGGGTAAAATG
Found at i:98381289 original size:38 final size:37
Alignment explanation
Indices: 98381247--98381327 Score: 108
Period size: 38 Copynumber: 2.1 Consensus size: 37
98381237 TAGTAATTCT
* *
98381247 GTAAACTGAGGGTAAAATGGTAATTCTGTAAATTGAGG
1 GTAAAC-GAGGGTAAAATGGTAATTATGTAAATCGAGG
* *
98381285 GTAAAACGGGGGTAAAATGGTAATTATGTAAATCGGGG
1 GT-AAACGAGGGTAAAATGGTAATTATGTAAATCGAGG
98381323 GTAAA
1 GTAAA
98381328 ATGGTAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
37 3 0.08
38 31 0.82
39 4 0.11
ACGTcount: A:0.38, C:0.05, G:0.31, T:0.26
Consensus pattern (37 bp):
GTAAACGAGGGTAAAATGGTAATTATGTAAATCGAGG
Found at i:98381315 original size:27 final size:27
Alignment explanation
Indices: 98381285--98381336 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
98381275 TAAATTGAGG
98381285 GTAAAACGGGGGTAAAATGGTAATTAT
1 GTAAAACGGGGGTAAAATGGTAATTAT
*
98381312 GTAAATCGGGGGTAAAATGGTAATT
1 GTAAAACGGGGGTAAAATGGTAATT
98381337 TTACAAGTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.31, T:0.27
Consensus pattern (27 bp):
GTAAAACGGGGGTAAAATGGTAATTAT
Found at i:98381328 original size:38 final size:38
Alignment explanation
Indices: 98381256--98381328 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
98381246 TGTAAACTGA
* *
98381256 GGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAACGG
1 GGGTAAAATGGTAATTATGTAAATCGAGGGTAAAACGG
*
98381294 GGGTAAAATGGTAATTATGTAAATCGGGGGTAAAA
1 GGGTAAAATGGTAATTATGTAAATCGAGGGTAAAA
98381329 TGGTAATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.38, C:0.04, G:0.32, T:0.26
Consensus pattern (38 bp):
GGGTAAAATGGTAATTATGTAAATCGAGGGTAAAACGG
Found at i:98386103 original size:43 final size:43
Alignment explanation
Indices: 98386055--98386169 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 43
98386045 TGTGATTACA
* * * *
98386055 TGTAAGACCATGTCTGGGTCATTGGCATTG-TATTGAGATTCCG
1 TGTAAGACCATGTCTGGGACATCGGCATCGTTAAT-AGATTCCG
* * *
98386098 TGTAAGACCATGTTTGGGACATCGGCATCGTTAATCGATTTCG
1 TGTAAGACCATGTCTGGGACATCGGCATCGTTAATAGATTCCG
*
98386141 TGTAAGACCCTGTCT-GGACAGT-GGCATCG
1 TGTAAGACCATGTCTGGGACA-TCGGCATCG
98386170 ATATGTGATA
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 12 0.20
43 46 0.75
44 3 0.05
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATCGGCATCGTTAATAGATTCCG
Found at i:98390538 original size:47 final size:47
Alignment explanation
Indices: 98390469--98390639 Score: 272
Period size: 47 Copynumber: 3.7 Consensus size: 47
98390459 CCCTTCGGGA
* * * *
98390469 CTTATCACAT-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
98390515 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
* *
98390562 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
*
98390609 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
98390640 GCGTAAAATC
Statistics
Matches: 117, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
46 10 0.09
47 107 0.91
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
Found at i:98394437 original size:43 final size:43
Alignment explanation
Indices: 98394376--98394553 Score: 329
Period size: 43 Copynumber: 4.1 Consensus size: 43
98394366 CCTTGCTCGA
* *
98394376 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGACCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
98394419 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
98394462 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
98394505 ATCACTGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
98394548 ATCACC
1 ATCACC
98394554 AGCATGACTG
Statistics
Matches: 131, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 131 1.00
ACGTcount: A:0.33, C:0.32, G:0.22, T:0.13
Consensus pattern (43 bp):
ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:98394727 original size:42 final size:42
Alignment explanation
Indices: 98394536--98394747 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 42
98394526 AGGCACGAAG
* * * * * * *
98394536 GCCCGAATACATATCACCAGCATGACTGCTCTTCGGAACCTG
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * * * *
98394578 GTCCGG--ATACATCACTAGCATGAATGCTCTTCGGGATTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * *
98394618 GCCCGG--ATATATCACTAGCATGAATGCTCTTCGGGATTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
98394658 GCCCGGATGTA-A-CACCAGCACGAATGCTCTACGGGACTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
98394698 ACCCGGATATATATCGCCAGCACGAATGCTCTTCGGGACTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
98394740 GCCCGGAT
1 GCCCGGAT
98394748 CATCGTCGAG
Statistics
Matches: 144, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
40 103 0.72
41 2 0.01
42 39 0.27
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (42 bp):
GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
Found at i:98396745 original size:47 final size:47
Alignment explanation
Indices: 98396674--98396845 Score: 263
Period size: 47 Copynumber: 3.7 Consensus size: 47
98396664 CCCTTCGGGA
* * * * *
98396674 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
*
98396721 CCTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
* *
98396768 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
*
98396815 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
98396846 GCGTAAAATC
Statistics
Matches: 115, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 115 1.00
ACGTcount: A:0.28, C:0.33, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
Found at i:98412880 original size:20 final size:19
Alignment explanation
Indices: 98412837--98412873 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
98412827 AGGGACTAAA
* *
98412837 ATGAAAAGTTGTAAAATTG
1 ATGAAAAATTCTAAAATTG
98412856 ATGAAAAATTCTAAAATT
1 ATGAAAAATTCTAAAATT
98412874 TTATGAATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32
Consensus pattern (19 bp):
ATGAAAAATTCTAAAATTG
Found at i:98414835 original size:40 final size:42
Alignment explanation
Indices: 98414759--98414838 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
98414749 ATAGGGGTTT
*
98414759 TCACACAGCCTGACACACGCCTGTGTCTATGGCCCGTGTCCC
1 TCACACAGCCTGACACACGCCTGTGTCTATAGCCCGTGTCCC
* *
98414801 TCACACGGCCATGACACTC-CC-GTGTCT-TAGCCCGTGTC
1 TCACACAGCC-TGACACACGCCTGTGTCTATAGCCCGTGTC
98414839 TAAAAACTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
40 10 0.29
41 6 0.18
42 11 0.32
43 7 0.21
ACGTcount: A:0.16, C:0.40, G:0.21, T:0.23
Consensus pattern (42 bp):
TCACACAGCCTGACACACGCCTGTGTCTATAGCCCGTGTCCC
Found at i:98415678 original size:31 final size:31
Alignment explanation
Indices: 98415640--98415702 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
98415630 AGTACAACTT
98415640 ACTCATCACAATCCAATACAACTCATATTGC
1 ACTCATCACAATCCAATACAACTCATATTGC
*
98415671 ACTCATCACCATCCAATACAACTCATATTGC
1 ACTCATCACAATCCAATACAACTCATATTGC
98415702 A
1 A
98415703 TACATTGATC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.33, G:0.03, T:0.25
Consensus pattern (31 bp):
ACTCATCACAATCCAATACAACTCATATTGC
Found at i:98416065 original size:48 final size:47
Alignment explanation
Indices: 98415864--98416128 Score: 184
Period size: 48 Copynumber: 5.6 Consensus size: 47
98415854 TGCTGACGCT
*
98415864 ATGTCCCAGACATGGTCTTACACTAGCTTTCATAT-AGTGAGGCCGATGCC
1 ATGTCCCAGACA-GGTCTTACACTAGC-TTCATATCA-CGAGGCCGATG-C
* * * * *
98415914 ATGTCCCAGATAGGTCTTACACTATCTCTCAT-CCATCGATGTCGATGCC
1 ATGTCCCAGACAGGTCTTACACTAGCT-TCATATCA-CGAGGCCGATG-C
* * * * * * *
98415963 ATGTCCCAGACATGTCTTACTCT-G--ACACACCAC-AAGCTGACAT-C
1 ATGTCCCAGACAGGTCTTACACTAGCTTCATATCACGAGGCCG--ATGC
* *
98416007 ATGTCTCAGACAGGTCTTACACTAGCTTGTATATCACGAGGCCGATGC
1 ATGTCCCAGACAGGTCTTACACTAGCTT-CATATCACGAGGCCGATGC
* * * *
98416055 ATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATGC
1 ATGTCCCAGACAGGTCTTACACTAGCTT-CATATCACGAGGCCGATGC
* * *
98416103 ATGTCCTAGACATGTATTACACTAGC
1 ATGTCCCAGACAGGTCTTACACTAGC
98416129 ACACATATCA
Statistics
Matches: 170, Mismatches: 34, Indels: 24
0.75 0.15 0.11
Matches are distributed among these distances:
44 24 0.14
45 4 0.02
46 5 0.03
47 2 0.01
48 72 0.42
49 52 0.31
50 11 0.06
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (47 bp):
ATGTCCCAGACAGGTCTTACACTAGCTTCATATCACGAGGCCGATGC
Found at i:98416133 original size:142 final size:143
Alignment explanation
Indices: 98415864--98416125 Score: 322
Period size: 141 Copynumber: 1.9 Consensus size: 143
98415854 TGCTGACGCT
* *
98415864 ATGTCCCAGACATGGTCTTACACTAGCTTTCATATAGTGAGGCCGATGCCATGTCCCAGATAGGT
1 ATGTCCCAGACATGGTCTTACACTAGCTTTCATATAGCGAGGCCGATGCCATGTCCCAGACAGGT
* * * * * *
98415929 CTTACACTATCTCTCATCCATCGATGTCGATGCCATGTCCCAGACATGTCTTACTCTGACACACC
66 CTTACACTAGCTCTAATCCATCGAGGCCGATGCCATGTCCCAGACATGTATTACACTGACACACC
98415994 ACAAGCTGACATC
131 ACAAGCTGACATC
* *
98416007 ATGTCTCAGACA-GGTCTTACACTAGCTTGT-ATATCA-CGAGGCCGATG-CATGTCCCAGACAT
1 ATGTCCCAGACATGGTCTTACACTAGCTT-TCATAT-AGCGAGGCCGATGCCATGTCCCAGACAG
* * *
98416068 GTCTTACACTGGCT-TAAATATC-TCGAGGCCGATG-CATGTCCTAGACATGTATTACACT
64 GTCTTACACTAGCTCT-AAT-CCATCGAGGCCGATGCCATGTCCCAGACATGTATTACACT
98416126 AGCACACATA
Statistics
Matches: 102, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
140 22 0.22
141 36 0.35
142 31 0.30
143 13 0.13
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (143 bp):
ATGTCCCAGACATGGTCTTACACTAGCTTTCATATAGCGAGGCCGATGCCATGTCCCAGACAGGT
CTTACACTAGCTCTAATCCATCGAGGCCGATGCCATGTCCCAGACATGTATTACACTGACACACC
ACAAGCTGACATC
Found at i:98416137 original size:48 final size:48
Alignment explanation
Indices: 98416037--98416139 Score: 143
Period size: 48 Copynumber: 2.1 Consensus size: 48
98416027 ACTAGCTTGT
* * **
98416037 ATATCACGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAA
1 ATATCACGAGGCCGATGCATGTCCCAGACATGTATTACACTAGCACAA
* * *
98416085 ATATCTCGAGGCCGATGCATGTCCTAGACATGTATTACACTAGCACAC
1 ATATCACGAGGCCGATGCATGTCCCAGACATGTATTACACTAGCACAA
98416133 ATATCAC
1 ATATCAC
98416140 CCATTATCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (48 bp):
ATATCACGAGGCCGATGCATGTCCCAGACATGTATTACACTAGCACAA
Found at i:98418184 original size:79 final size:82
Alignment explanation
Indices: 98418044--98418228 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
98418034 TCGAATGATG
* * *
98418044 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
98418108 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
98418124 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
98418186 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
98418204 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
98418229 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:98418236 original size:40 final size:40
Alignment explanation
Indices: 98418045--98418236 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
98418035 CGAATGATGT
* * * * *
98418045 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
98418085 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
98418125 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
98418164 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
98418204 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
98418237 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:98418259 original size:79 final size:79
Alignment explanation
Indices: 98418044--98418261 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
98418034 TCGAATGATG
* * * * ** *
98418044 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
98418107 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
98418124 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
98418189 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
98418204 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
98418262 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:98426997 original size:40 final size:40
Alignment explanation
Indices: 98426952--98427118 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
98426942 CGGAATATAA
98426952 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
98426992 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
98427032 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
98427072 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
98427111 CCGGATAT
1 CCGGATAT
98427119 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:98427102 original size:80 final size:79
Alignment explanation
Indices: 98426968--98427118 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
98426958 ATAATCACGT
*
98426968 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
98427033 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
98427048 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
98427111 CCGGATAT
64 CCGGATAT
98427119 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:98428367 original size:54 final size:52
Alignment explanation
Indices: 98428306--98428411 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 52
98428296 TCCCCTTTTC
98428306 CCTTAGTA-ATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTTTTCTTT
1 CCTTAGTACA-TTCGGCCAAGAAGATGGAG-AAGGATGAAC--ATTTTTTTTCTTT
***
98428360 CCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTCTTT
1 CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTCTTT
98428412 TTTTTTTTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
52 13 0.28
54 30 0.64
55 4 0.09
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (52 bp):
CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTCTTT
Found at i:98434991 original size:40 final size:40
Alignment explanation
Indices: 98434946--98435112 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
98434936 CGGAATATAA
98434946 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
98434986 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
98435026 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
98435066 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
98435105 CCGGATAT
1 CCGGATAT
98435113 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:98436368 original size:56 final size:54
Alignment explanation
Indices: 98436305--98436414 Score: 134
Period size: 56 Copynumber: 2.0 Consensus size: 54
98436295 CCCCCTTTTC
98436305 CCTTAGTA-ATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTCTTTTCTTT
1 CCTTAGTACA-TTCGGCCAAGAAGATGGAG-AAGGATGAAC--ATTTTTCTTTTCTTT
*** *
98436361 CCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTTTCTTT
1 CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTCTTTTCTTT
98436415 TTTTTTTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
54 14 0.29
56 30 0.62
57 4 0.08
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37
Consensus pattern (54 bp):
CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTCTTTTCTTT
Found at i:98437379 original size:40 final size:39
Alignment explanation
Indices: 98437296--98437487 Score: 127
Period size: 40 Copynumber: 4.8 Consensus size: 39
98437286 TCGAATGATG
* * * * *
98437296 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
98437336 TCCGGACTAGGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * * * *
98437376 TCCGGGCTAAGCCCGAAGGCATTTGTACAAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * * * *
98437415 CCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTCACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
98437456 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
98437488 CGTTATATCC
Statistics
Matches: 120, Mismatches: 28, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
39 32 0.27
40 79 0.66
41 9 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:98437434 original size:79 final size:82
Alignment explanation
Indices: 98437296--98437480 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 82
98437286 TCGAATGATG
* * * *
98437296 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
98437360 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
98437376 TCCGGGCTAAG-CCCGAAGGCATTTGTAC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
* *
98437438 TCGTGTGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
98437456 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
98437481 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:98443229 original size:24 final size:24
Alignment explanation
Indices: 98443199--98443465 Score: 462
Period size: 24 Copynumber: 11.1 Consensus size: 24
98443189 GAATGTGACT
* *
98443199 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
98443223 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
98443247 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
98443271 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
98443295 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
98443319 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
98443343 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
98443367 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
98443391 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
98443415 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
98443439 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
98443463 ATA
1 ATA
98443466 TGGTCTTTGC
Statistics
Matches: 237, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 237 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:98451264 original size:24 final size:24
Alignment explanation
Indices: 98451234--98451524 Score: 510
Period size: 24 Copynumber: 12.1 Consensus size: 24
98451224 GAATGTGACT
* *
98451234 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
98451258 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
98451282 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
98451306 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
98451330 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
98451354 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
98451378 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
98451402 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
98451426 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
98451450 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
98451474 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
98451498 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
98451522 ATA
1 ATA
98451525 TGGTCTTTGC
Statistics
Matches: 259, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 259 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:98455786 original size:39 final size:39
Alignment explanation
Indices: 98455743--98455819 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 39
98455733 CCGGACATAT
* * *
98455743 TTCCAGCACGTAGCCTGCGGACCTTAAGTCTGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCTGGATATAA
*
98455782 TTCCAGTACATAGCCTGCGGACCCTAAGTCTGGATATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCTGGATATA
98455820 CATCACTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCTGGATATAA
Found at i:98458168 original size:22 final size:21
Alignment explanation
Indices: 98458128--98458168 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
98458118 TTTGTTCTTC
*
98458128 TTTTCTTATTTCAATTAATAT
1 TTTTCTTATTTCAAATAATAT
*
98458149 TTTTTTTATTTCAAAATAAT
1 TTTTCTTATTTC-AAATAAT
98458169 GCAAATTCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTCTTATTTCAAATAATAT
Found at i:98471844 original size:39 final size:39
Alignment explanation
Indices: 98471760--98471912 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
98471750 TATGGTAACC
** * *
98471760 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
98471800 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
98471839 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
98471878 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
98471913 TCGAACATTC
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 86 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:98471886 original size:78 final size:79
Alignment explanation
Indices: 98471729--98471911 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
98471719 TCGTTCAAAC
* * **
98471729 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
98471794 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** * *
98471809 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGGTATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
98471873 CAATTTGCACAATT
66 CAATTTGCACAATT
98471887 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
98471912 CTCGAACATT
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:98482843 original size:40 final size:40
Alignment explanation
Indices: 98482761--98482881 Score: 154
Period size: 40 Copynumber: 3.0 Consensus size: 40
98482751 TGTGTATGAA
* *
98482761 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCATT
*
98482800 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCATT
* *** * *
98482840 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCATT
98482880 TG
1 TG
98482882 AATGAGTAGC
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 25 0.35
40 46 0.65
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.26
Consensus pattern (40 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCATT
Found at i:98489159 original size:16 final size:17
Alignment explanation
Indices: 98489130--98489165 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
98489120 ATTTAAAATT
98489130 TATTTTGATGCCTATAA
1 TATTTTGATGCCTATAA
*
98489147 TATTTTG-TGCCTATGA
1 TATTTTGATGCCTATAA
98489163 TAT
1 TAT
98489166 GTGTGTGCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.25, C:0.11, G:0.14, T:0.50
Consensus pattern (17 bp):
TATTTTGATGCCTATAA
Found at i:98489554 original size:2 final size:2
Alignment explanation
Indices: 98489547--98489572 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
98489537 CGGCTCTAGC
98489547 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
98489573 TGTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:98490386 original size:39 final size:40
Alignment explanation
Indices: 98490276--98490455 Score: 204
Period size: 40 Copynumber: 4.5 Consensus size: 40
98490266 TTCGAATGGT
* * *
98490276 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
98490317 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
98490357 AACCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * * *
98490396 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
98490437 A-CCGGGC-AATGTCCCGAAG
1 ATCCGGGCTAA-GTCCCGAAG
98490456 ACAATCGAGC
Statistics
Matches: 120, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 36 0.30
40 54 0.45
41 30 0.25
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:98490412 original size:79 final size:81
Alignment explanation
Indices: 98490278--98490455 Score: 218
Period size: 79 Copynumber: 2.2 Consensus size: 81
98490268 CGAATGGTAT
* * * *
98490278 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGCTAAGTCCCGAAGGCAATT
98490343 GTGCGAGTTACCAAAA
66 GTGCGAGTTACCAAAA
* * * *
98490359 CCGGGTTAAGT-CCGAAGGCATTCGTGC-GAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGCTAAGTCCCGAAGGCAATT
* * * *
98490422 GTGCGAATCACTATAA
66 GTGCGAGTTACCAAAA
98490438 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
98490456 ACAATCGAGC
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 2 0.02
79 50 0.61
80 20 0.24
81 10 0.12
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGCTAAGTCCCGAAGGCAATT
GTGCGAGTTACCAAAA
Found at i:98497029 original size:2 final size:2
Alignment explanation
Indices: 98497022--98497047 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
98497012 CGGCTCTAGC
98497022 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
98497048 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:98497820 original size:40 final size:39
Alignment explanation
Indices: 98497756--98497932 Score: 176
Period size: 40 Copynumber: 4.4 Consensus size: 39
98497746 GAATGGTATC
* * *
98497756 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTAAAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAAT
* * *
98497796 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAAT
* *
98497836 CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * * * * *
98497875 CCGAGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAAC
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAT
98497916 CGGGC-AATGTCCCGAAG
1 CGGGCTAA-GTCCCGAAG
98497933 ACAATCGAGC
Statistics
Matches: 114, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
39 9 0.08
40 103 0.90
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:98497889 original size:80 final size:80
Alignment explanation
Indices: 98497755--98497932 Score: 207
Period size: 80 Copynumber: 2.2 Consensus size: 80
98497745 CGAATGGTAT
* * * * * *
98497755 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTAAATCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGGTGACTAAATCGAGCTAAGTCCCGAAGGCAATTG
98497820 TGCGAGTTACCAAAA
66 TGCGAGTTACCAAAA
* * *
98497835 CCGGGTTAAGTCCCGAAGGCATTCGTGCGA-GTTACTAAATCCGAGCTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGGTGACTAAAT-CGAGCTAAGTCCCGAAGGCAATT
* * * *
98497899 GTGCGAATCACTATAA
65 GTGCGAGTTACCAAAA
98497915 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
98497933 ACAATCGAGC
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 11 0.13
80 71 0.87
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGGTGACTAAATCGAGCTAAGTCCCGAAGGCAATTG
TGCGAGTTACCAAAA
Found at i:98497957 original size:80 final size:80
Alignment explanation
Indices: 98497805--98497957 Score: 173
Period size: 80 Copynumber: 1.9 Consensus size: 80
98497795 TCGGGTTAAG
* * * * * * * *
98497805 TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTAC
1 TCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGACAATCGAGCGAGTCAC
98497870 TAAATCCGAGCTAAT
66 TAAATCCGAGCTAAT
* * * *
98497885 TCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAAGACAATCGAGCTAGTCG
1 TCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAA-GTCCCGAAGACAATCGAGCGAGTCA
*
98497949 CTATATCCG
65 CTAAATCCG
98497958 GTTAAATTCT
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
79 2 0.03
80 57 0.97
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.22
Consensus pattern (80 bp):
TCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGACAATCGAGCGAGTCAC
TAAATCCGAGCTAAT
Found at i:98501111 original size:43 final size:43
Alignment explanation
Indices: 98500951--98501122 Score: 174
Period size: 43 Copynumber: 4.0 Consensus size: 43
98500941 CATAGGATTC
*
98500951 CGATATGTG-TTATCGTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTA-CGTGTAAGACCACGTCTGGGACGTTGGCAT
* * * * *
98500994 CGAT-TTGAGATTTATGTGTAAGACCATGTCTGGGACATCGGCAT
1 CGATATT-TGA-TTACGTGTAAGACCACGTCTGGGACGTTGGCAT
* * *
98501038 C-ATATATGATTTCGTGTAAGACC-CTATCTGGGACAG-TGGCAT
1 CGATATTTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCAT
*
98501080 CGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
98501123 TGTACGAGCT
Statistics
Matches: 102, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 28 0.27
43 42 0.41
44 29 0.28
45 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:98503496 original size:51 final size:50
Alignment explanation
Indices: 98503434--98503607 Score: 208
Period size: 52 Copynumber: 3.4 Consensus size: 50
98503424 CGATACCCGA
* * *
98503434 TGGCCTACACATAGTACCACCCTTGTAGTCAAAGTTATCTTCTTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGT-GACAAAGTTATCTTCTTCACAAAG
* *
98503485 TGGCCTTCACATAGTACAACACTTGCGACCAAAGCTATAT-TTCTTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTGA-CAAAG-T-TATCTTCTTCACAAAG
* * * * *
98503537 TGGCCTTCACATAGTACCGCACTTATGACCAAGCTATC-TCTTCTCAAAG
1 TGGCCTTCACATAGTACCACACTTGTGACAAAGTTATCTTCTTCACAAAG
98503586 TGGCCTTCACATAGTACCACAC
1 TGGCCTTCACATAGTACCACAC
98503608 CTGATTCACT
Statistics
Matches: 106, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
49 34 0.32
50 1 0.01
51 31 0.29
52 37 0.35
53 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (50 bp):
TGGCCTTCACATAGTACCACACTTGTGACAAAGTTATCTTCTTCACAAAG
Found at i:98511366 original size:16 final size:18
Alignment explanation
Indices: 98511347--98511379 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
98511337 CATACGAATT
98511347 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
98511363 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
98511380 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:98512011 original size:43 final size:43
Alignment explanation
Indices: 98511950--98512069 Score: 197
Period size: 43 Copynumber: 2.8 Consensus size: 43
98511940 GAACTCATTG
*
98511950 ACCGGCATTA-CGCCTGCTAGGCTCGAAGCCCGATATTAACTC
1 ACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAACTC
* *
98511992 ACCGGTATTATAGCCTGCTAGGCTCGAAGCCCAATATTAACTC
1 ACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAACTC
98512035 ACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGA
1 ACCGGCATTATAGCCTGCTAGGCTCGAA-GCCCGA
98512070 ATAGTATCGT
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
42 9 0.13
43 57 0.80
44 5 0.07
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.22
Consensus pattern (43 bp):
ACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAACTC
Found at i:98518452 original size:33 final size:33
Alignment explanation
Indices: 98518406--98518472 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
98518396 CGATTTTTAG
98518406 TTTAATTCATTTAATCATTGGTAAATAAAAATA
1 TTTAATTCATTTAATCATTGGTAAATAAAAATA
*
98518439 TTTAATTCGTTTAATCATTGGTAAATAAAAATA
1 TTTAATTCATTTAATCATTGGTAAATAAAAATA
98518472 T
1 T
98518473 AAAGAGAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.43, C:0.06, G:0.07, T:0.43
Consensus pattern (33 bp):
TTTAATTCATTTAATCATTGGTAAATAAAAATA
Found at i:98518909 original size:7 final size:7
Alignment explanation
Indices: 98518897--98518937 Score: 66
Period size: 7 Copynumber: 6.0 Consensus size: 7
98518887 TGAGTGAGAC
98518897 TGAGCAG
1 TGAGCAG
98518904 TGAGCAG
1 TGAGCAG
98518911 TGAGCAG
1 TGAGCAG
98518918 TGAGCAG
1 TGAGCAG
*
98518925 TGAG-AC
1 TGAGCAG
98518931 TGAGCAG
1 TGAGCAG
98518938 AGGCTCCTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
6 5 0.16
7 26 0.84
ACGTcount: A:0.29, C:0.15, G:0.41, T:0.15
Consensus pattern (7 bp):
TGAGCAG
Found at i:98519922 original size:21 final size:21
Alignment explanation
Indices: 98519898--98519944 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
98519888 TTCCTTTTTG
*
98519898 TTTT-TTTTACTTTTGTTATTA
1 TTTTATTTTA-TTTTGTTACTA
*
98519919 TTTTATTTTATTTTTTTACTA
1 TTTTATTTTATTTTGTTACTA
98519940 TTTTA
1 TTTTA
98519945 CTACTACTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (21 bp):
TTTTATTTTATTTTGTTACTA
Found at i:98532664 original size:20 final size:21
Alignment explanation
Indices: 98532639--98532679 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
98532629 ATTTTTGAAA
* *
98532639 TAGGGC-ACATGCTCGTGTAG
1 TAGGGCAACACGCCCGTGTAG
98532659 TAGGGCAACACGCCCGTGTAG
1 TAGGGCAACACGCCCGTGTAG
98532680 CCACTATGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.22, C:0.24, G:0.34, T:0.20
Consensus pattern (21 bp):
TAGGGCAACACGCCCGTGTAG
Found at i:98538584 original size:29 final size:29
Alignment explanation
Indices: 98538551--98538661 Score: 114
Period size: 29 Copynumber: 3.8 Consensus size: 29
98538541 TGACGAGATT
** *
98538551 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCAAGCTGGAAAAATAA
* *
98538580 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCAAGCTGGAAAAATAA
* * *
98538609 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCAAGCTGGAAAAATAA
** *
98538638 GGCACTGGGTGTGCGAGCTCGGAA
1 GGCACTAAGTGTGCAAGCT-GGAA
98538662 GGTATGGCAC
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
29 66 0.94
30 4 0.06
ACGTcount: A:0.31, C:0.16, G:0.32, T:0.22
Consensus pattern (29 bp):
GGCACTAAGTGTGCAAGCTGGAAAAATAA
Found at i:98546658 original size:29 final size:28
Alignment explanation
Indices: 98546626--98546735 Score: 103
Period size: 29 Copynumber: 3.8 Consensus size: 28
98546616 TGACGAGATT
**
98546626 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCAAGCTGGAAA-ATAA
* *
98546655 GGCACTAAGTGTGCATGCTGGAAAATAT
1 GGCACTAAGTGTGCAAGCTGGAAAATAA
* * *
98546683 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCAAGCTGG-AAAATAA
** *
98546712 GGCACTGGGTGTGCGAGCTCGGAA
1 GGCACTAAGTGTGCAAGCT-GGAA
98546736 GGTATGGCAC
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
28 21 0.30
29 46 0.67
30 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.32, T:0.22
Consensus pattern (28 bp):
GGCACTAAGTGTGCAAGCTGGAAAATAA
Found at i:98546697 original size:28 final size:28
Alignment explanation
Indices: 98546628--98546707 Score: 106
Period size: 28 Copynumber: 2.8 Consensus size: 28
98546618 ACGAGATTGG
* *
98546628 CACTAAGTGTGCGTGCTGGAAATATAAGG
1 CACTAAGTGTGCATGCTGGAAA-ATAAGA
*
98546657 CACTAAGTGTGCATGCTGGAAAATATGA
1 CACTAAGTGTGCATGCTGGAAAATAAGA
* *
98546685 CACTATGTGTGCAAGCTGGAAAA
1 CACTAAGTGTGCATGCTGGAAAA
98546708 ATACGGCACT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 25 0.54
29 21 0.46
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.24
Consensus pattern (28 bp):
CACTAAGTGTGCATGCTGGAAAATAAGA
Found at i:98549925 original size:29 final size:29
Alignment explanation
Indices: 98549892--98550002 Score: 114
Period size: 29 Copynumber: 3.8 Consensus size: 29
98549882 TGACGAGATT
** *
98549892 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCAAGCTGGAAAAATAA
* *
98549921 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCAAGCTGGAAAAATAA
* * *
98549950 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCAAGCTGGAAAAATAA
** *
98549979 GGCACTGGGTGTGCGAGCTCGGAA
1 GGCACTAAGTGTGCAAGCT-GGAA
98550003 GGTATGGCAC
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
29 66 0.94
30 4 0.06
ACGTcount: A:0.31, C:0.16, G:0.32, T:0.22
Consensus pattern (29 bp):
GGCACTAAGTGTGCAAGCTGGAAAAATAA
Found at i:98552479 original size:49 final size:49
Alignment explanation
Indices: 98552365--98552736 Score: 319
Period size: 49 Copynumber: 7.7 Consensus size: 49
98552355 GGGATAAAAA
* * * ** * *
98552365 GCCGATGCCATATCCCAGACATAGTCTTACACTGGCTACCACAT-TGAA-
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGACTTTCATATATCAAG
* * *
98552413 GTCGATACCATGTCCCAGATAGGTCTTACACTGACTTTCATATATCAAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAAG
* * * *
98552462 GCCAATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATC-GG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAAG
* * * ** * *
98552510 TGTCGATGCCATGTCCCAGACATGGTCTTAAACTGGCTAGCAAAT-TGAA-
1 -GCCGATGCCATGTCCCAGACA-GGTCTTACACTGACTTTCATATATCAAG
* * *
98552559 GTCGATGCCGTGTCCCAAACAGGTCTTACACTGACTTTCATATATCAAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAAG
* * * * * *
98552608 GCCGATGCCATATCCCAGGCAGGTCTTACACTGGCTCTCATCTATC-GG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAAG
* * * * *
98552656 TGTCGATGCCATGTCTCAGACAGGTCTTACACT-AGCTTGCATATCTCGAG
1 -GCCGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTTCATATATCAAG
*
98552706 GCCGATG-CATGTCCCAGACATGTCTTACACT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACT
98552737 AGCTCTCGTC
Statistics
Matches: 259, Mismatches: 55, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
47 34 0.13
48 66 0.25
49 140 0.54
50 19 0.07
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAAG
Found at i:98552567 original size:97 final size:96
Alignment explanation
Indices: 98552466--98552732 Score: 290
Period size: 97 Copynumber: 2.8 Consensus size: 96
98552456 ATCAAGGCCA
*
98552466 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGGTGTCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTGGCT-TCATATATCGG-GCCGATGCCATGTCCCAGAC
*
98552531 ATGGTCTTAAACTGGCTAGCA-AATTGAAGTCG
64 ATGGTCTTAAACTGGCTAGCACAATCGAAGTCG
* * * * * *
98552563 ATGCCGTGTCCCAAACAGGTCTTACACTGACTTTCATATATCAAGGCCGATGCCATATCCCAGGC
1 ATGCCATGTCCCAGACAGGTCTTACACTGGC-TTCATATATC-GGGCCGATGCCATGTCCCAGAC
* ** * **
98552628 A-GGTCTTACACTGGCTCTCATCTATCGGTGTCG
64 ATGGTCTTAAACTGGCTAGCA-CAATCGAAGTCG
* * *
98552661 ATGCCATGTCTCAGACAGGTCTTACACTAGCTTGCATATCTCGAGGCCGATG-CATGTCCCAGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTGGCTT-CATATATCG-GGCCGATGCCATGTCCCAGAC
98552725 AT-GTCTTA
64 ATGGTCTTA
98552733 CACTAGCTCT
Statistics
Matches: 140, Mismatches: 23, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
96 16 0.11
97 74 0.53
98 50 0.36
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (96 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGGCTTCATATATCGGGCCGATGCCATGTCCCAGACAT
GGTCTTAAACTGGCTAGCACAATCGAAGTCG
Found at i:98552719 original size:146 final size:146
Alignment explanation
Indices: 98552367--98552824 Score: 506
Period size: 146 Copynumber: 3.2 Consensus size: 146
98552357 GATAAAAAGC
* * * * * * * *
98552367 CGATGCCATATCCCAGACATAGTCTTACACTGGCTACCACATTGAAGTCGATACCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTAAACTAGCTAGCAAATTGAAGCCGATGCCATGTCCCAGA
* *
98552432 TAGGTCTTACACTGACTTTCATATATCAAGGCCAATGCCATGTCCCAGACAGGTCTTACACTGGC
66 CAGGTCTTACACTGACTTTCATATATCAAGGCCAATGCCATATCCCAGACAGGTCTTACACTGGC
98552497 TCTCATATATCGGTGT
131 TCTCATATATCGGTGT
* * * *
98552513 CGATGCCATGTCCCAGACATGGTCTTAAACTGGCTAGCAAATTGAAGTCGATGCCGTGTCCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTAAACTAGCTAGCAAATTGAAGCCGATGCCATGTCCCAGA
* *
98552578 CAGGTCTTACACTGACTTTCATATATCAAGGCCGATGCCATATCCCAGGCAGGTCTTACACTGGC
66 CAGGTCTTACACTGACTTTCATATATCAAGGCCAATGCCATATCCCAGACAGGTCTTACACTGGC
*
98552643 TCTCATCTATCGGTGT
131 TCTCATATATCGGTGT
* * * * *
98552659 CGATGCCATGTCTCAGACA-GGTCTTACACTAGCTTGCATATCTCGAGGCCGATG-CATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTAAACTAGCTAGCAAAT-T-GAAGCCGATGCCATGTCCCA
* * * * * * * *
98552722 GACATGTCTTACACT-AGCTCTC--GTCTCAATGCCAATG-CATGTCTCAGACATGTCTTACACT
64 GACAGGTCTTACACTGA-CTTTCATATATCAAGGCCAATGCCATATCCCAGACAGGTCTTACACT
* * *
98552783 GGCACTCAT-GAT--GTGG
128 GGCTCTCATATATCGGTGT
98552799 CTGATG-CATGTCCCAGACAT-GTCTTA
1 C-GATGCCATGTCCCAGACATGGTCTTA
98552825 CACTGGTTCA
Statistics
Matches: 271, Mismatches: 36, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
140 22 0.08
141 4 0.01
142 2 0.01
143 28 0.10
144 11 0.04
145 19 0.07
146 177 0.65
147 8 0.03
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (146 bp):
CGATGCCATGTCCCAGACATGGTCTTAAACTAGCTAGCAAATTGAAGCCGATGCCATGTCCCAGA
CAGGTCTTACACTGACTTTCATATATCAAGGCCAATGCCATATCCCAGACAGGTCTTACACTGGC
TCTCATATATCGGTGT
Found at i:98552773 original size:46 final size:47
Alignment explanation
Indices: 98552665--98552782 Score: 150
Period size: 46 Copynumber: 2.5 Consensus size: 47
98552655 GTGTCGATGC
* * *
98552665 CATGTCTCAGACAGGTCTTACACTAGCTTGCATATCTCGAGGCCGATG
1 CATGTCTCAGACATGTCTTACACTAGCTTGCA-ATCTCAAGGCCAATG
* * *
98552713 CATGTCCCAGACATGTCTTACACTAGCTCT-C-GTCTCAATGCCAATG
1 CATGTCTCAGACATGTCTTACACTAGCT-TGCAATCTCAAGGCCAATG
98552759 CATGTCTCAGACATGTCTTACACT
1 CATGTCTCAGACATGTCTTACACT
98552783 GGCACTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 34 0.55
48 27 0.44
49 1 0.02
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (47 bp):
CATGTCTCAGACATGTCTTACACTAGCTTGCAATCTCAAGGCCAATG
Found at i:98553201 original size:31 final size:30
Alignment explanation
Indices: 98553163--98553236 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
98553153 TATTTTGGGT
* *
98553163 AAAATGACCATTTTTGACCTTAGACTTTCAC
1 AAAATGACCATTTTCGACCCTA-ACTTTCAC
*
98553194 AAAATGACCA-TTTCGCCCCTAACTTTCAC
1 AAAATGACCATTTTCGACCCTAACTTTCAC
*
98553223 AAAATGACTATTTT
1 AAAATGACCATTTT
98553237 ACCCCTAGGC
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
29 17 0.45
30 11 0.29
31 10 0.26
ACGTcount: A:0.34, C:0.24, G:0.08, T:0.34
Consensus pattern (30 bp):
AAAATGACCATTTTCGACCCTAACTTTCAC
Found at i:98553241 original size:29 final size:29
Alignment explanation
Indices: 98553186--98553243 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
98553176 TTGACCTTAG
*
98553186 ACTTTCACAAAATGACCATTTCGCCCCTA
1 ACTTTCACAAAATGACCATTTCACCCCTA
* *
98553215 ACTTTCACAAAATGACTATTTTACCCCTA
1 ACTTTCACAAAATGACCATTTCACCCCTA
98553244 GGCCCGGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.33, C:0.31, G:0.05, T:0.31
Consensus pattern (29 bp):
ACTTTCACAAAATGACCATTTCACCCCTA
Found at i:98558586 original size:41 final size:42
Alignment explanation
Indices: 98558483--98558616 Score: 137
Period size: 43 Copynumber: 3.1 Consensus size: 42
98558473 ATGCAAACAC
* * * *
98558483 CCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGT
1 CCCAGACATGGTCTTACACGAAATCAAATA-CGATGCCAATGT
* *
98558526 CCCAGGCAAGGTCTTACACGAAATCAAATACGATGCCAAT-T
1 CCCAGACATGGTCTTACACGAAATCAAATACGATGCCAATGT
* **
98558567 CTCAGACATGGTCTTACACGTAAATCATAAGT-CGATGCCAACAT
1 CCCAGACATGGTCTTACACG-AAATCA-AA-TACGATGCCAATGT
98558611 CCCAGA
1 CCCAGA
98558617 TGTAGTCTTA
Statistics
Matches: 76, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
41 18 0.24
42 15 0.20
43 36 0.47
44 7 0.09
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (42 bp):
CCCAGACATGGTCTTACACGAAATCAAATACGATGCCAATGT
Found at i:98574604 original size:13 final size:14
Alignment explanation
Indices: 98574578--98574607 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
98574568 ATAAAAAATG
98574578 ATAATTATTAATAT
1 ATAATTATTAATAT
98574592 ATAATTA-TAATAT
1 ATAATTATTAATAT
98574605 ATA
1 ATA
98574608 TTAATTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATTAATAT
Found at i:98574733 original size:22 final size:24
Alignment explanation
Indices: 98574697--98574744 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
98574687 TAATCTTTAA
98574697 TATATAATTATATCTATTAT-AATT
1 TATATAATTATATCT-TTATCAATT
98574721 TATATAA-TA-ATCTTTATCAATT
1 TATATAATTATATCTTTATCAATT
98574743 TA
1 TA
98574745 GCATAGAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 2 0.09
24 7 0.30
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (24 bp):
TATATAATTATATCTTTATCAATT
Done.