Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 316 of 433
Found at i:98575435 original size:25 final size:24
Alignment explanation
Indices: 98575388--98575441 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
98575378 TAGTTTTCTC
* *
98575388 TTAATTTTTAATTTTATTCAATTA
1 TTAATTTTTAATTTCATTAAATTA
98575412 GTTAATTTTTCAA-TTCATTAAATTA
1 -TTAATTTTT-AATTTCATTAAATTA
98575437 TTAAT
1 TTAAT
98575442 AATTTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 5 0.19
25 19 0.73
26 2 0.08
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.57
Consensus pattern (24 bp):
TTAATTTTTAATTTCATTAAATTA
Found at i:98581917 original size:20 final size:20
Alignment explanation
Indices: 98581892--98581929 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
98581882 GTTTATTCGC
*
98581892 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
98581912 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
98581930 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:98583587 original size:28 final size:28
Alignment explanation
Indices: 98583555--98583623 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
98583545 GCGTAGATCA
98583555 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
98583583 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
98583611 CGATA-TACCCCTA
1 CGAAATTACCCCTA
98583624 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:98589925 original size:20 final size:20
Alignment explanation
Indices: 98589900--98589937 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
98589890 GTTTATTCGC
*
98589900 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
98589920 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
98589938 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:98591593 original size:28 final size:28
Alignment explanation
Indices: 98591561--98591629 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
98591551 GCGTAGATCA
98591561 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
98591589 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
98591617 CGATA-TACCCCTA
1 CGAAATTACCCCTA
98591630 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:98597567 original size:39 final size:39
Alignment explanation
Indices: 98597468--98597554 Score: 140
Period size: 39 Copynumber: 2.2 Consensus size: 39
98597458 GATTTAATGT
*
98597468 CTAGCAGGCCTCT-TGCTGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCT-TGTGCCGGTGATAAATTCAGGTTTATAC
*
98597507 CTAGCAGGCCTTGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTTGTGCCGGTGATAAATTCAGGTTTATAC
98597546 CTAGCAGGC
1 CTAGCAGGC
98597555 TAATTTCCGG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
38 1 0.02
39 44 0.98
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (39 bp):
CTAGCAGGCCTTGTGCCGGTGATAAATTCAGGTTTATAC
Found at i:98616637 original size:27 final size:27
Alignment explanation
Indices: 98616580--98616637 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
98616570 TATTTTTACA
* *
98616580 TTACACATTCAATTAAAATCAACATAT
1 TTACACATTCAATTAAAATCAACAAAC
* *
98616607 TTACATATTCAATT-AAATTACACAAAC
1 TTACACATTCAATTAAAATCA-ACAAAC
98616634 TTAC
1 TTAC
98616638 TTGTAGAATC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (27 bp):
TTACACATTCAATTAAAATCAACAAAC
Found at i:98618724 original size:68 final size:64
Alignment explanation
Indices: 98618633--98618854 Score: 189
Period size: 67 Copynumber: 3.4 Consensus size: 64
98618623 TAATACGAGA
* * *
98618633 TGTATACCATGTGTACAAGAGAGCTACGAGACATTATGAGGTAGCTAGGTTGCATGGGTGATACT
1 TGTACACCATGTGCACAAGAGAGCTACGAG--A-TA-GAAGTAGCTAGGTTGCATGGGTGATACT
98618698 ATG
62 ATG
* * * * * *
98618701 TGTACACCATGTAG-ACAAGAGAGCTACTAGATAGATGTAACTAGGTTGCATGTGTGGT-TTCAG
1 TGTACACCATGT-GCACAAGAGAGCTACGAGATAGAAGTAGCTAGGTTGCATGGGTGATACT-A-
98618764 GTG
63 -TG
* * ** * **
98618767 AAGGACACCATGTAAACAAGAGAGCTACGAGATA-AAGTGGCTAGGTCACATGGGTGATACTATG
1 -TGTACACCATGTGCACAAGAGAGCTACGAGATAGAAGTAGCTAGGTTGCATGGGTGATACTATG
*
98618831 TGTGCACCATGTGCACAAGAGAGC
1 TGTACACCATGTGCACAAGAGAGC
98618855 CAAAATTATG
Statistics
Matches: 123, Mismatches: 24, Indels: 19
0.74 0.14 0.11
Matches are distributed among these distances:
63 20 0.16
64 24 0.20
65 2 0.02
66 21 0.17
67 29 0.24
68 26 0.21
69 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (64 bp):
TGTACACCATGTGCACAAGAGAGCTACGAGATAGAAGTAGCTAGGTTGCATGGGTGATACTATG
Found at i:98623052 original size:40 final size:40
Alignment explanation
Indices: 98622860--98623045 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
98622850 TCGAATGATG
* * *
98622860 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
98622900 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
98622940 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
98622980 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
98623021 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
98623046 AACGAGTAGC
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 123 0.92
41 10 0.07
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:98623052 original size:80 final size:80
Alignment explanation
Indices: 98622860--98623078 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 80
98622850 TCGAATGATG
* * **
98622860 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
98622924 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
98622940 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCATT
98623004 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTA-AA
* **
98623021 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
98623079 TACGTGATTC
Statistics
Matches: 122, Mismatches: 11, Indels: 13
0.84 0.08 0.09
Matches are distributed among these distances:
79 16 0.13
80 97 0.80
81 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:98631092 original size:79 final size:82
Alignment explanation
Indices: 98630954--98631137 Score: 254
Period size: 79 Copynumber: 2.3 Consensus size: 82
98630944 TCGAATGATG
* *
98630954 TCCGGGCTAAGTCCC-AAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCCAAGGCATT
98631017 TGTGCGAGTTACTA-AA
66 TGTGCGAGTTACTATAA
* * * **
98631033 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCCAAGGCATT
98631096 TGTGCGAGTTACTATAA
66 TGTGCGAGTTACTATAA
*
98631113 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
98631138 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
79 62 0.67
80 24 0.26
81 7 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCCAAGGCATT
TGTGCGAGTTACTATAA
Found at i:98631103 original size:39 final size:39
Alignment explanation
Indices: 98630954--98631137 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 39
98630944 TCGAATGATG
* * *
98630954 TCCGGGCTAAGTCCCAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCAAGGCATTTGTGC-GAGTTACTAAA
* *
98630993 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCAAGGCATTTGTGCGAGTTACTAAA
*
98631033 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCC-AAGGCATTTGTGCGAGTTACTAAA
*
98631073 TCCGGGTTAAGTCCCAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCAAGGCATTTGTGCGAGTTACTA-AA
*
98631113 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCC-AAGGCATTTG
98631138 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
39 47 0.36
40 76 0.58
41 7 0.05
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCAAGGCATTTGTGCGAGTTACTAAA
Found at i:98631144 original size:79 final size:79
Alignment explanation
Indices: 98631000--98631160 Score: 220
Period size: 79 Copynumber: 2.0 Consensus size: 79
98630990 ATATCCGGAC
* * **
98631000 TAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGATCCCAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
98631065 TTA-CTAAATCCGGGT
66 -TAGCTAAATCC-GGT
*
98631080 TAAG-TCCCAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGATCCCAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGA
*
98631143 GTAGCTATATCCGGT
65 GTAGCTAAATCCGGT
98631158 TAA
1 TAA
98631161 ACTCCGAAGG
Statistics
Matches: 73, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
78 8 0.11
79 59 0.81
80 6 0.08
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
TAAGATCCCAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
TAGCTAAATCCGGT
Found at i:98632946 original size:12 final size:12
Alignment explanation
Indices: 98632929--98632953 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98632919 AGTGATGATG
98632929 TATGTAAGAAAA
1 TATGTAAGAAAA
98632941 TATGTAAGAAAA
1 TATGTAAGAAAA
98632953 T
1 T
98632954 GATCATATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.16, T:0.28
Consensus pattern (12 bp):
TATGTAAGAAAA
Found at i:98635610 original size:39 final size:39
Alignment explanation
Indices: 98635535--98635795 Score: 432
Period size: 39 Copynumber: 6.7 Consensus size: 39
98635525 CCGCACAAAG
*
98635535 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
98635575 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
98635614 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
* * * *
98635653 GCCTTCGGGCTTAGCCTGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
98635692 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
*
98635731 GCCTTCAGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
98635770 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
98635796 TCGAACATTC
Statistics
Matches: 204, Mismatches: 17, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
39 195 0.96
40 9 0.04
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:98635651 original size:78 final size:78
Alignment explanation
Indices: 98635495--98635795 Score: 467
Period size: 78 Copynumber: 3.8 Consensus size: 78
98635485 TCGTTCAAAC
* * ** * ** *
98635495 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATC
98635560 ACAATTTGCACAATT
64 ACAATTTGCACAATT
98635575 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
98635640 AATTTGCACAATT
66 AATTTGCACAATT
*
98635653 GCCTTCGGGCTTAGCCTGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
98635718 AATTTGCACAATT
66 AATTTGCACAATT
* * * *
98635731 GCCTTCAGGCTTAGCCCGGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
98635796 TCGAACATTC
Statistics
Matches: 207, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
78 166 0.80
79 32 0.15
80 9 0.04
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (78 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
AATTTGCACAATT
Found at i:98642584 original size:28 final size:28
Alignment explanation
Indices: 98642515--98642615 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
98642505 GACAAGATTG
* * * *
98642515 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
98642545 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
98642573 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
98642602 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
98642616 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:98650136 original size:28 final size:28
Alignment explanation
Indices: 98650067--98650167 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
98650057 GACAAGATTG
* * * *
98650067 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
98650097 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
98650125 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
98650154 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
98650168 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:98654444 original size:39 final size:39
Alignment explanation
Indices: 98654369--98654551 Score: 312
Period size: 39 Copynumber: 4.7 Consensus size: 39
98654359 CCGCACAAAG
*
98654369 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
98654409 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
98654448 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
98654487 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
*
98654526 GCCTTCAGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
98654552 TCGAACATTC
Statistics
Matches: 135, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 126 0.93
40 9 0.07
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:98654485 original size:78 final size:78
Alignment explanation
Indices: 98654329--98654551 Score: 320
Period size: 78 Copynumber: 2.8 Consensus size: 78
98654319 TCGTTCAAAC
* * ** * ** *
98654329 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATC
98654394 ACAATTTGCACAATT
64 ACAATTTGCACAATT
98654409 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
98654474 AATTTGCACAATT
66 AATTTGCACAATT
* * * *
98654487 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATTGCCTTCAGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
98654552 TCGAACATTC
Statistics
Matches: 131, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
78 90 0.69
79 32 0.24
80 9 0.07
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (78 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
AATTTGCACAATT
Found at i:98657512 original size:15 final size:15
Alignment explanation
Indices: 98657492--98657520 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
98657482 GGAAACTAAG
98657492 ATAGAGAAATCCAAA
1 ATAGAGAAATCCAAA
98657507 ATAGAGAAATCCAA
1 ATAGAGAAATCCAA
98657521 GATACAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.14, G:0.14, T:0.14
Consensus pattern (15 bp):
ATAGAGAAATCCAAA
Found at i:98658132 original size:22 final size:22
Alignment explanation
Indices: 98658104--98658153 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
98658094 TCACCATCAT
98658104 ATCATTCACTTCAGGAAAACTA
1 ATCATTCACTTCAGGAAAACTA
98658126 ATCATTCACTTCAGGAAAACTA
1 ATCATTCACTTCAGGAAAACTA
98658148 A-CATTC
1 ATCATTC
98658154 TTATTTGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 5 0.18
22 23 0.82
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (22 bp):
ATCATTCACTTCAGGAAAACTA
Found at i:98675095 original size:59 final size:61
Alignment explanation
Indices: 98674982--98675097 Score: 157
Period size: 59 Copynumber: 1.9 Consensus size: 61
98674972 ATTGATTATC
* * *
98674982 TTAATATTAAAATTAATTTATGTTTATCTTGTAGATAAATATTCTATTATTTTAATAATAT
1 TTAATATTAAAATTAATTAATATTTATCTTGTAGATAAATATTCTATTAATTTAATAATAT
* *
98675043 TTAATATTAAACTTAATCTAATATTTAT-TT-T-GATAAATATTGTATTAATTTAATA
1 TTAATATTAAAATTAAT-TAATATTTATCTTGTAGATAAATATTCTATTAATTTAATA
98675098 TTAAAGTAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
59 22 0.45
60 1 0.02
61 18 0.37
62 8 0.16
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (61 bp):
TTAATATTAAAATTAATTAATATTTATCTTGTAGATAAATATTCTATTAATTTAATAATAT
Found at i:98678629 original size:5 final size:5
Alignment explanation
Indices: 98678619--98678652 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
98678609 GTATAACTCA
98678619 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
98678653 CTTGTTAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:98684972 original size:2 final size:2
Alignment explanation
Indices: 98684965--98684992 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
98684955 ACCAGAACAG
98684965 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
98684993 GTGTGGCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:98685075 original size:27 final size:26
Alignment explanation
Indices: 98685027--98685078 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
98685017 GCGAGGCTGT
*
98685027 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
98685053 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
98685079 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:98685705 original size:26 final size:27
Alignment explanation
Indices: 98685676--98685729 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
98685666 TCACACAAGT
*
98685676 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
98685702 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
98685729 T
1 T
98685730 GATAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:98685762 original size:27 final size:27
Alignment explanation
Indices: 98685732--98685902 Score: 218
Period size: 27 Copynumber: 6.3 Consensus size: 27
98685722 GGCAAAATGA
* * *
98685732 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
*
98685759 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
*
98685786 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
*
98685813 TAATTCTATCCTAC-AGTGGTATTTCGG
1 TAATTCTACCCTACAAG-GGTATTTCGG
* **
98685840 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGG
* * *
98685867 TAATTCTACCCTATAGGGGTATTTCAG
1 TAATTCTACCCTACAAGGGTATTTCGG
98685894 TAATTCTAC
1 TAATTCTAC
98685903 AACTTATCCA
Statistics
Matches: 128, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
26 2 0.02
27 125 0.98
28 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGG
Found at i:98685843 original size:81 final size:81
Alignment explanation
Indices: 98685749--98685901 Score: 243
Period size: 81 Copynumber: 1.9 Consensus size: 81
98685739 ACCCCACAAG
** * *
98685749 GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGT
1 GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCAGT
98685814 AATTCTATCCTACAGT
66 AATTCTATCCTACAGT
* * *
98685830 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCAGT
1 GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCAGT
98685895 AATTCTA
66 AATTCTA
98685902 CAACTTATCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (81 bp):
GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCAGT
AATTCTATCCTACAGT
Found at i:98685888 original size:54 final size:54
Alignment explanation
Indices: 98685732--98685902 Score: 243
Period size: 54 Copynumber: 3.2 Consensus size: 54
98685722 GGCAAAATGA
* * *
98685732 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGG
* * *
98685786 TATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGTGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGG
* ** * *
98685840 TAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCAG
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGG
98685894 TAATTCTAC
1 TAATTCTAC
98685903 AACTTATCCA
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 103 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (54 bp):
TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGG
Found at i:98691701 original size:2 final size:2
Alignment explanation
Indices: 98691694--98691719 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
98691684 CAGAACAGAG
98691694 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
98691720 GTGTGGCGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:98692525 original size:27 final size:27
Alignment explanation
Indices: 98692457--98692575 Score: 148
Period size: 27 Copynumber: 4.4 Consensus size: 27
98692447 GGGGCAAAAT
* * * *
98692457 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
98692484 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
98692511 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
98692538 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
98692565 GATAATTCTAC
1 GGTAATTCTAC
98692576 AACTTATCCA
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:98700930 original size:93 final size:93
Alignment explanation
Indices: 98700750--98700984 Score: 263
Period size: 93 Copynumber: 2.5 Consensus size: 93
98700740 CAATAGTACG
* * * * *
98700750 TAGCGTAGCTAATGTACTTGCGGTACAGTGTAATGCGGTAATCCGCTATACCGATAGATTTGCAG
1 TAGCGCAGCTAATGTACATGCGGTACAGTGCAATGCGGTAATCTGCTATACCGATAGATTTGCAA
* * * *
98700815 TGAAACTGCCTGTTCTGTCAATGATACA
66 TAAAACTGCCAGTTCAGCCAATGATACA
* ** * * *
98700843 TTGTTCAGCTAATATACATACGGTACAGTGCAATGCGGTAATCTGCTATACCGATAGGTTTGCAA
1 TAGCGCAGCTAATGTACATGCGGTACAGTGCAATGCGGTAATCTGCTATACCGATAGATTTGCAA
* * **
98700908 TAAAACTGTCAGTTCAGCCAATGGTATG
66 TAAAACTGCCAGTTCAGCCAATGATACA
* * * *
98700936 TAGCGCAACTAATGTACGTGCGGTATAGTGCAATGCGTTAATCTGCTAT
1 TAGCGCAGCTAATGTACATGCGGTACAGTGCAATGCGGTAATCTGCTAT
98700985 TGTAACAGCT
Statistics
Matches: 114, Mismatches: 28, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
93 114 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (93 bp):
TAGCGCAGCTAATGTACATGCGGTACAGTGCAATGCGGTAATCTGCTATACCGATAGATTTGCAA
TAAAACTGCCAGTTCAGCCAATGATACA
Found at i:98717132 original size:2 final size:2
Alignment explanation
Indices: 98717125--98717173 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
98717115 CTTAATATAA
98717125 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
98717167 AC AC AC A
1 AC AC AC A
98717174 TATATATATA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:98718472 original size:56 final size:56
Alignment explanation
Indices: 98718407--98718541 Score: 207
Period size: 56 Copynumber: 2.4 Consensus size: 56
98718397 TCCCAGACAG
* *
98718407 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACATATTAAACGT
1 GGTCTTACTCGCACACATATATCAGAATCACAAATCGATGCCAACAAATTAAACGT
* * * *
98718463 GGTCATACTCGCACAAATATATCAGAATCACAAATTGATGCCAACAAATTAAGCGT
1 GGTCTTACTCGCACACATATATCAGAATCACAAATCGATGCCAACAAATTAAACGT
*
98718519 GGTCTTACTCACACACATATATC
1 GGTCTTACTCGCACACATATATC
98718542 GATGCCATGG
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 70 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCAGAATCACAAATCGATGCCAACAAATTAAACGT
Found at i:98722117 original size:31 final size:31
Alignment explanation
Indices: 98722045--98722250 Score: 274
Period size: 31 Copynumber: 6.7 Consensus size: 31
98722035 TTAGTCTTGG
** *
98722045 CATAT-ACTGGGCCGAAGCCTTTTGTTTAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
**
98722075 GGT-T-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
98722104 CATATCACTGGGCCAAAGCCTTATCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
98722135 CATATCACTGGGCCGAAGCCTTATCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
98722166 CATATCACTGGGCCGAAGCCTTATCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* * *
98722197 AATATCTCTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
98722228 CATATCATTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
98722251 ACTGTAAATG
Statistics
Matches: 156, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
29 24 0.15
30 2 0.01
31 130 0.83
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:98722483 original size:24 final size:24
Alignment explanation
Indices: 98722456--98722539 Score: 109
Period size: 24 Copynumber: 3.5 Consensus size: 24
98722446 CTGGAGGCCT
98722456 AGCCTCTTTTAGT-AACTGGGGCAA
1 AGCC-CTTTTAGTAAACTGGGGCAA
98722480 AGCCCTTTT-GATAAACTGGGGCAA
1 AGCCCTTTTAG-TAAACTGGGGCAA
* *
98722504 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-AGTAAACTGGGGCAA
98722529 AGCCCTTTTAG
1 AGCCCTTTTAG
98722540 CACTTCCTCC
Statistics
Matches: 54, Mismatches: 2, Indels: 8
0.84 0.03 0.12
Matches are distributed among these distances:
22 1 0.02
23 6 0.11
24 25 0.46
25 21 0.39
26 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAGTAAACTGGGGCAA
Found at i:98722525 original size:25 final size:24
Alignment explanation
Indices: 98722469--98722537 Score: 111
Period size: 25 Copynumber: 2.8 Consensus size: 24
98722459 CTCTTTTAGT
98722469 AACTGGGGCAAAGCCCTTTTGATA
1 AACTGGGGCAAAGCCCTTTTGATA
*
98722493 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTT-GATA
*
98722518 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
98722538 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
24 20 0.48
25 22 0.52
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (24 bp):
AACTGGGGCAAAGCCCTTTTGATA
Found at i:98723408 original size:27 final size:27
Alignment explanation
Indices: 98723346--98723423 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
98723336 GGGCATATTC
98723346 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
*
98723373 GTCACTTTACTC-TACAGGGGCT-TTACG
1 GTCATTTTAC-CATACAGGGG-TATTACG
* *
98723400 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
98723424 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
26 3 0.07
27 38 0.88
28 2 0.05
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:98723560 original size:27 final size:27
Alignment explanation
Indices: 98723513--98724593 Score: 515
Period size: 27 Copynumber: 40.1 Consensus size: 27
98723503 TTTCTATAAC
* * *
98723513 TTTTAGAAAGTCAAGGGTATTTTTGTAA
1 TTTTACAAA-TCAGGGGTATTTTGGTAA
**
98723541 TTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
*
98723568 TTTTACAAAT-TGAGGGTATTTTGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* * *
98723595 TTTCACAAACCAGTGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* *
98723622 TTTTACAAA-CTAAGGGTATTATGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
* *
98723649 TTTTACAAACCAGGGGTATTTTAGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * *
98723676 TTTTACAGACCA-GGGTAATTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
***
98723702 TTTTACTGGTC-GAGGGTATTTTGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
** * *
98723729 TTTT-GTAATACAAGGGTATTTTAGTAA
1 TTTTACAAAT-CAGGGGTATTTTGGTAA
** *****
98723756 TTTTGTAAATC-GAGGGTAAAACAGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* ** * *** *
98723783 TTCTGTAAATCAAGGGTAAAATAGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * **** *
98723810 TTCTATAAATC-GAGGGTAAAACGATAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* * ****
98723837 TTCTATAAATC-GAGGGTAAAACGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* ** *
98723864 TTATGTAAATC-GAGGGTACTTTGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* **
98723891 TTTTACAAGTC-GAGGGTATTTTAATAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
** **
98723918 TTTTACAGGTC-GAGGGTATTTCAGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
*
98723945 TTTCACAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
*
98723972 TTTTACAAAT-TGAGGGTATTTTGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* * *
98723999 TTTCACAAACCAGTGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* *
98724026 TTTTACAAA-CTAAGGGTATTATGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
* *
98724053 TTTTACAAACCAGGGGTATTTTAGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * *
98724080 TTTTACAGACCA-GGGTAATTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
***
98724106 TTTTACTGGTC-GAGGGTATTTTGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
** * *
98724133 TTTT-GTAATACAAGGGTATTTTAGTAA
1 TTTTACAAAT-CAGGGGTATTTTGGTAA
** *****
98724160 TTTTGTAAATC-GAGGGTAAAACAGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* ** * *** *
98724187 TTCTGTAAATCAAGGGTAAAATAGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * **** *
98724214 TTCTATAAATC-GAGGGTAAAACGATAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* ** ****
98724241 TTCTGTAAATC-GAGGGTAAAACGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* ** *
98724268 TTATGTAAATC-GAGGGTACTTTGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* **
98724295 TTTTACAAGTC-GAGGGTATTTTAATAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
** **
98724322 TTTTACAGGTC-GAGGGTATTTCAGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
*
98724349 TTTCACAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * * *
98724376 TTTTATAAATTAAGGGTATTTTGATAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
*
98724403 TTTTACAAA-CTAGGGGTATTTTGGTAG
1 TTTTACAAATC-AGGGGTATTTTGGTAA
98724430 TTTTACAAA-CTAGGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
*
98724457 TTTTACAAA-CTAAGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
** * *
98724484 TTTTGTAAAACAAGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* *
98724511 TTTTACAAACCAGGGGTATTTTGGTGA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * *
98724538 TTTTACAAACCAAGGGTATTTTAGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
98724565 TTTT-CAAA-CTAGGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
98724591 TTT
1 TTT
98724594 GGTAAACTAA
Statistics
Matches: 871, Mismatches: 153, Indels: 60
0.80 0.14 0.06
Matches are distributed among these distances:
25 1 0.00
26 69 0.08
27 781 0.90
28 20 0.02
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.38
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:98723595 original size:54 final size:54
Alignment explanation
Indices: 98723526--98724593 Score: 596
Period size: 54 Copynumber: 19.8 Consensus size: 54
98723516 TAGAAAGTCA
* ** *
98723526 AGGGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCG
* * * *
98723580 AGGGTATTTTGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAA-CTA
1 AGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATC-G
* * * * *
98723634 AGGGTATTATGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAGA-CC
1 AGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCG
* *** ** *
98723687 AGGGTAATTTGGTAATTTTACTGGTC-GAGGGTATTTTGGTAATTTT-GTAATACA
1 AGGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAAT-CG
* ** ***** * ** *
98723741 AGGGTATTTTAGTAATTTTGTAAATC-GAGGGTAAAACAGTAATTCTGTAAATCA
1 AGGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAATCG
*** * * * **** * * *
98723795 AGGGTAAAATAGTAATTCTATAAATC-GAGGGTAAAACGATAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAATCG
**** * ** * *
98723849 AGGGTAAAACGGTAATTATGTAAATC-GAGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAATCG
** ** ** *
98723903 AGGGTATTTTAATAATTTTACAGGTC-GAGGGTATTTCAGTAATTTCACAAATC-
1 AGGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAATCG
* * *
98723956 AGGGGTATTTTGGTAATTTTACAAAT-TGAGGGTATTTTGGTAATTTCACAAA-CC
1 A-GGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAATCG
* * *
98724010 AGTGGTATTTTGGTAATTTTACAAA-CTAAGGGTATTATGGTAATTTTACAAA-CC
1 AG-GGTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAATCG
* * * * ***
98724064 AGGGGTATTTTAGTAATTTTACAGACCA-GGGTAATTTGGTAATTTTACTGGTCG
1 A-GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCG
** * * **
98724118 AGGGTATTTTGGTAATTTT-GTAATACAAGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAAT-CAGGGGTATTTTGGTAATTTTACAAATCG
***** * ** * *** * * *
98724172 AGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCG
**** * * ** **** * **
98724226 AGGGTAAAACGATAATTCTGTAAATC-GAGGGTAAAACGGTAATTATGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAATCG
* * ** **
98724280 AGGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTTAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAATCG
** * * **
98724334 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTATAAATTA
1 AGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCG
* * *
98724388 AGGGTATTTTGATAATTTTACAAA-CTAGGGGTATTTTGGTAGTTTTACAAA-CT
1 AGGGTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAATCG
* ** * *
98724441 AGGGGTATTTTGGTAATTTTACAAA-CTAAGGGTATTTTGGTAATTTTGTAAAACA
1 A-GGGTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAATCG
* * * *
98724496 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCG
*
98724550 AGGGTATTTTAGTAATTTT-CAAA-CTAGGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTT
98724594 GGTAAACTAA
Statistics
Matches: 810, Mismatches: 180, Indels: 49
0.78 0.17 0.05
Matches are distributed among these distances:
52 4 0.00
53 101 0.12
54 693 0.86
55 12 0.01
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCG
Found at i:98724275 original size:404 final size:404
Alignment explanation
Indices: 98723547--98724568 Score: 1780
Period size: 404 Copynumber: 2.5 Consensus size: 404
98723537 GTAATTTTGT
98723547 AAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAGTGGT
1 AAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAGTGGT
98723612 ATTTTGGTAATTTTACAAACTAAGGGTATTATGGTAATTTTACAAACCAGGGGTATTTTAGTAAT
66 ATTTTGGTAATTTTACAAACTAAGGGTATTATGGTAATTTTACAAACCAGGGGTATTTTAGTAAT
98723677 TTTACAGACCAGGGTAATTTGGTAATTTTACTGGTCGAGGGTATTTTGGTAATTTTGTAATACAA
131 TTTACAGACCAGGGTAATTTGGTAATTTTACTGGTCGAGGGTATTTTGGTAATTTTGTAATACAA
98723742 GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAG
196 GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAG
98723807 TAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAA
261 TAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAA
98723872 ATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAATAATTTTACAGGTCGAGGGTAT
326 ATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAATAATTTTACAGGTCGAGGGTAT
98723937 TTCAGTAATTTCAC
391 TTCAGTAATTTCAC
98723951 AAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAGTGGT
1 AAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAGTGGT
98724016 ATTTTGGTAATTTTACAAACTAAGGGTATTATGGTAATTTTACAAACCAGGGGTATTTTAGTAAT
66 ATTTTGGTAATTTTACAAACTAAGGGTATTATGGTAATTTTACAAACCAGGGGTATTTTAGTAAT
98724081 TTTACAGACCAGGGTAATTTGGTAATTTTACTGGTCGAGGGTATTTTGGTAATTTTGTAATACAA
131 TTTACAGACCAGGGTAATTTGGTAATTTTACTGGTCGAGGGTATTTTGGTAATTTTGTAATACAA
98724146 GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAG
196 GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAG
*
98724211 TAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAA
261 TAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAA
98724276 ATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAATAATTTTACAGGTCGAGGGTAT
326 ATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAATAATTTTACAGGTCGAGGGTAT
98724341 TTCAGTAATTTCAC
391 TTCAGTAATTTCAC
* * * * * *
98724355 AAATCAGGGGTATTTTGGTAATTTTATAAATTAAGGGTATTTTGATAATTTTACAAACTAGGGGT
1 AAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAGTGGT
* * * * * *
98724420 ATTTTGGTAGTTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAAT
66 ATTTTGGTAATTTTACAAACTAAGGGTATTATGGTAATTTTACAAACCAGGGGTATTTTAGTAA-
* * * *** * * **
98724485 TTTGTA-AAACAAGGGTATTTTGGTAATTTTAC-AAACCAGGGGTATTTTGGTGATTTTACAA-A
130 TTT-TACAGACCAGGGTAATTTGGTAATTTTACTGGTCGA-GGGTATTTTGGTAATTTTGTAATA
98724547 CCAAGGGTATTTTAGTAATTTT
193 -CAAGGGTATTTTAGTAATTTT
98724569 CAAACTAGGG
Statistics
Matches: 591, Mismatches: 23, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
404 523 0.88
405 66 0.11
406 2 0.00
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.37
Consensus pattern (404 bp):
AAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAGTGGT
ATTTTGGTAATTTTACAAACTAAGGGTATTATGGTAATTTTACAAACCAGGGGTATTTTAGTAAT
TTTACAGACCAGGGTAATTTGGTAATTTTACTGGTCGAGGGTATTTTGGTAATTTTGTAATACAA
GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAG
TAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTATGTAA
ATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAATAATTTTACAGGTCGAGGGTAT
TTCAGTAATTTCAC
Found at i:98726875 original size:31 final size:31
Alignment explanation
Indices: 98726830--98726975 Score: 231
Period size: 31 Copynumber: 4.7 Consensus size: 31
98726820 TTAGTATTGG
98726830 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
98726860 CATATCACTAGGCCGAAGCCTTATCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
98726891 CATATCACTGGGCTGAAGCCTTATCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
98726922 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
98726953 CATATCATTGGGTCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
98726976 ACTGTAAATG
Statistics
Matches: 107, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
30 5 0.05
31 102 0.95
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:98727208 original size:24 final size:24
Alignment explanation
Indices: 98727181--98727287 Score: 126
Period size: 25 Copynumber: 4.4 Consensus size: 24
98727171 CTGGAGGCCT
*
98727181 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
98727205 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
*
98727229 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTT-GATAAACTGGGGCAA
* * * *
98727254 AGCCCTTTTCGGTAAATTGGAGCAT
1 AGCCCTTTT-GATAAACTGGGGCAA
98727279 AGCCCTTTT
1 AGCCCTTTT
98727288 AGCACTTCCT
Statistics
Matches: 76, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
23 7 0.09
24 24 0.32
25 45 0.59
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:98727250 original size:25 final size:25
Alignment explanation
Indices: 98727194--98727287 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
98727184 CTCTTTTAAT
*
98727194 AACTGGGGCAAAGCCCTTTT-GATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
98727218 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
98727243 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
* * *
98727268 AATTGGAGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
98727288 AGCACTTCCT
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
24 20 0.31
25 45 0.69
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:98728142 original size:27 final size:27
Alignment explanation
Indices: 98728080--98728181 Score: 82
Period size: 27 Copynumber: 3.8 Consensus size: 27
98728070 GGGCATATTC
98728080 GTCATTTTACCATACAGGGGTATTACA
1 GTCATTTTACCATACAGGGGTATTACA
* * *
98728107 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACA
* * **
98728134 GTCTTTTTACC-TAATAGGGGTATTTTA
1 GTCATTTTACCAT-ACAGGGGTATTACA
* * *
98728161 GTCATTTCACCCTACAAGGGT
1 GTCATTTTACCATACAGGGGT
98728182 GTTTTGGTAA
Statistics
Matches: 58, Mismatches: 13, Indels: 8
0.73 0.16 0.10
Matches are distributed among these distances:
26 2 0.03
27 54 0.93
28 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACA
Found at i:98728228 original size:27 final size:27
Alignment explanation
Indices: 98728198--98728249 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
98728188 GTAAATCTAC
98728198 AAACCAA-GGCTATTTC-AGTAATTTTGT
1 AAACCAATGG-TATTTCTA-TAATTTTGT
98728225 AAACCAATGGTATTTCTATAATTTT
1 AAACCAATGGTATTTCTATAATTTT
98728250 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAATGGTATTTCTATAATTTTGT
Found at i:98728301 original size:27 final size:27
Alignment explanation
Indices: 98728247--98728924 Score: 394
Period size: 27 Copynumber: 25.1 Consensus size: 27
98728237 TTTCTATAAT
* * *
98728247 TTTTAGAAAGTCAAGGGTATTTTTGTAA
1 TTTTACAAA-TCAGGGGTATTTTGGTAA
**
98728275 TTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
*
98728302 TTTTACAAAT-TGAGGGTATTTTGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* * *
98728329 TTTCACAAACCAGTGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* *
98728356 TTTTACAAA-CTAAGGGTATTATGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
* *
98728383 TTTTACAAACCAGGGGTATTTTAGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * *
98728410 TTTTACAGACCA-GGGTAATTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
**
98728436 TTTTACTGATC-GAGGGTATTTTGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
** * *
98728463 TTTT-GTAATACAAGGGTATTTTAGTAA
1 TTTTACAAAT-CAGGGGTATTTTGGTAA
** *****
98728490 TTTTGTAAATC-GAGGGTAAAACAGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* ** * *** *
98728517 TTCTGTAAATCAAGGGTAAAATAGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * **** *
98728544 TTCTATAAATC-GAGGGTAAAACGATAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* ** **** *
98728571 TTCTGTAAATC-GAGGGTAAAACGATAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* ** *
98728598 TTATGTAAATC-GAGGGTACTTTGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* * **
98728625 TTTTACAAGTCGATGGG-ATTTTAATAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
* ** **
98728652 GTTTACAGGTC-GAGGGTATTTCAGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
*
98728679 TTTCACAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * *
98728706 TTTTACAAA-CTAAGGGTATGTTGATAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
* * *
98728733 TTTTACAAACCAGGAGTATTTTGGTAG
1 TTTTACAAATCAGGGGTATTTTGGTAA
98728760 TTTTACAAA-CTAGGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
98728787 TTTTACAAAGT-AGGGGTATTTTGGTAA
1 TTTTACAAA-TCAGGGGTATTTTGGTAA
* *
98728814 TTTTACAAAACAAGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* *
98728841 TTTTACAAACCAGGGGTATTTTGGTGA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * *
98728868 TTTTACAAACCAAGGGTATTTTAGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * *
98728895 TTTTATAAACCAGGGGTATTTTCGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
98728922 TTT
1 TTT
98728925 GGTAAACTAA
Statistics
Matches: 536, Mismatches: 91, Indels: 47
0.80 0.14 0.07
Matches are distributed among these distances:
26 31 0.06
27 488 0.91
28 17 0.03
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:98737218 original size:19 final size:19
Alignment explanation
Indices: 98737181--98737218 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
98737171 ACCTGTCAGA
*
98737181 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
98737200 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
98737219 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:98761583 original size:40 final size:40
Alignment explanation
Indices: 98761481--98761664 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
98761471 AAATTGAATG
* * * * *
98761481 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
98761521 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
98761561 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
98761601 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
98761641 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
98761665 CTTGGTGTGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:98768714 original size:39 final size:40
Alignment explanation
Indices: 98768656--98768756 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
98768646 AAATTGAATG
* *
98768656 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
98768695 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
98768735 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
98768757 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:98768749 original size:40 final size:40
Alignment explanation
Indices: 98768656--98768832 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
98768646 AAATTGAATG
* * * * *
98768656 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
98768695 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
98768735 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
98768775 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
*
98768815 ATATCCGGG-TAAGTCCCG
1 ATATCCGGGCTAAGACCCG
98768833 TGGCCTTGGT
Statistics
Matches: 117, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 40 0.34
40 75 0.64
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:98776886 original size:40 final size:40
Alignment explanation
Indices: 98776778--98776997 Score: 235
Period size: 40 Copynumber: 5.2 Consensus size: 40
98776768 CGGGATTTAA
* * * * *
98776778 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
98776818 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
98776858 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
98776898 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
98776938 CCGGATATATCAACCTTCGACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGG--ATAT--A---T---CAACTCGCACGAATGCCTTCGGGTCTTAGC
98776988 CCGGATATAT
1 CCGGATATAT
98776998 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 21
0.81 0.08 0.11
Matches are distributed among these distances:
39 1 0.01
40 106 0.69
42 4 0.03
43 1 0.01
44 1 0.01
46 1 0.01
47 1 0.01
48 4 0.03
50 34 0.22
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:98781057 original size:56 final size:56
Alignment explanation
Indices: 98780992--98781126 Score: 216
Period size: 56 Copynumber: 2.4 Consensus size: 56
98780982 TCTCAGACAG
* *
98780992 GGTCTTACTCACACACATATATCAGAATCACATATCGATGCCAACGTAATAAACGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACATAATAAACGT
* ** *
98781048 GGTCATACTCGCACACATATATTGGAATCACATATCGATGCCAACATATTAAACGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACATAATAAACGT
98781104 GGTCTTACTCGCACACATATATC
1 GGTCTTACTCGCACACATATATC
98781127 GATGCCATGG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 71 1.00
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACATAATAAACGT
Found at i:98785636 original size:92 final size:93
Alignment explanation
Indices: 98785524--98785736 Score: 284
Period size: 92 Copynumber: 2.3 Consensus size: 93
98785514 ACGTACATTA
* *
98785524 GGTACAGTGCAATGCAGTAATCCGCTATACCAATAGGTTTGCAGTGAAACTGCCAATTCAGCCAA
1 GGTACAGTGCAATGCGGTAATCCGCTATACCAATAGGTTTGCAATGAAACTGCCAATTCAGCCAA
* *
98785589 TGGTAC-TAGCCCAGCTAATGTAAATGC
66 TGGTACGTAGCCCAGCAAACGTAAATGC
* * ** * *
98785616 GGTACAGTGCAAGGCGGTAATCCGCTACACTGATAGGTTTGCAATGAAACTGCCAGTTCAGTCAA
1 GGTACAGTGCAATGCGGTAATCCGCTATACCAATAGGTTTGCAATGAAACTGCCAATTCAGCCAA
* **
98785681 TGGTACGTAGCGCAGCAAACGTACGTGC
66 TGGTACGTAGCCCAGCAAACGTAAATGC
* *
98785709 GGTACAATGCAATGCGGTAATCTGCTAT
1 GGTACAGTGCAATGCGGTAATCCGCTAT
98785737 TGTAACAACC
Statistics
Matches: 103, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
92 63 0.61
93 40 0.39
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (93 bp):
GGTACAGTGCAATGCGGTAATCCGCTATACCAATAGGTTTGCAATGAAACTGCCAATTCAGCCAA
TGGTACGTAGCCCAGCAAACGTAAATGC
Found at i:98785850 original size:14 final size:16
Alignment explanation
Indices: 98785826--98785858 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
98785816 ATTTTCTATG
98785826 TTTATTATGTGT-AAA
1 TTTATTATGTGTGAAA
98785841 TTTA-TATGTGTGAAA
1 TTTATTATGTGTGAAA
98785856 TTT
1 TTT
98785859 CCGTGCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (16 bp):
TTTATTATGTGTGAAA
Found at i:98787477 original size:53 final size:53
Alignment explanation
Indices: 98787295--98787499 Score: 196
Period size: 53 Copynumber: 3.8 Consensus size: 53
98787285 ATTAGGGTTT
* * ** * * *
98787295 AAGGATACCAAGTAAGACCATGCCAAGGTATGGCATTAGTAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC-ATAAGGC
* * * * * *
98787349 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTATTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGT-AAGT-TCATAAGGC
* * * *
98787404 AAAGATCCCATGTAAGACCATG-CAAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGTC-AAGACATGGCAATGGTAAGTTCATAAGGC
* *
98787457 AAGGATACCACGTAAGACCATGTCAAGACATGACAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAG
98787500 GTTAAAAAGG
Statistics
Matches: 120, Mismatches: 27, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
53 43 0.36
54 36 0.30
55 40 0.33
56 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:98794925 original size:53 final size:54
Alignment explanation
Indices: 98794743--98794949 Score: 202
Period size: 53 Copynumber: 3.8 Consensus size: 54
98794733 ATTAGGGTTT
** * * *
98794743 AAGGATACCAAATAAGACCATGCCAAGTCATGGCATTGGTAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCTATAAGGC
* * * * * * * * *
98794797 AAGGAAATCATGCAAGACCATGTCAAGACATGGCATTGATACACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTA-AGTTCTATAAGGC
* * * *
98794852 AAAGATCCCATGTAAAACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCTATAAGGC
* *
98794905 AAGGATACCACGTAAGACCATGTCAAGAG-ATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAG-GCATGGCAATGGTAAGTT
98794950 TAAAAAGAAA
Statistics
Matches: 121, Mismatches: 30, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 44 0.36
54 37 0.31
55 40 0.33
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCTATAAGGC
Found at i:98797153 original size:41 final size:42
Alignment explanation
Indices: 98797107--98797222 Score: 121
Period size: 41 Copynumber: 2.8 Consensus size: 42
98797097 ATATGTGTGC
* *
98797107 TCGTGTAAGACCATATCTGTGACA-TCGGCA-TCATATTTGAT
1 TCGTGTAAGACCATATCTGGGACACT-GGCATTCATATGTGAT
*
98797148 TCGTGTAAGA-CACTATCTGGGACACTGGCATTGATATGTGAT
1 TCGTGTAAGACCA-TATCTGGGACACTGGCATTCATATGTGAT
* * **
98797190 TACATGTAAGACCACATCTGGGACGTTGGCATT
1 T-CGTGTAAGACCATATCTGGGACACTGGCATT
98797223 GTACGATGTG
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
40 2 0.03
41 24 0.38
42 11 0.17
43 24 0.38
44 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCATATCTGGGACACTGGCATTCATATGTGAT
Found at i:98797209 original size:43 final size:41
Alignment explanation
Indices: 98797110--98797223 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 41
98797100 TGTGTGCTCG
* * * * *
98797110 TGTAAGACCATATCTGTGACATCGGCA-TCATATTTGATTCG
1 TGTAAGACCACATCTGGGACAT-GGCATTGATATGTGATTCA
98797151 TGTAAGA-CACTATCTGGGACACTGGCATTGATATGTGATTACA
1 TGTAAGACCAC-ATCTGGGACA-TGGCATTGATATGTGATT-CA
*
98797194 TGTAAGACCACATCTGGGACGTTGGCATTG
1 TGTAAGACCACATCTGGGAC-ATGGCATTG
98797224 TACGATGTGT
Statistics
Matches: 61, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
40 2 0.03
41 20 0.33
42 11 0.18
43 25 0.41
44 3 0.05
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (41 bp):
TGTAAGACCACATCTGGGACATGGCATTGATATGTGATTCA
Found at i:98798699 original size:17 final size:17
Alignment explanation
Indices: 98798673--98798706 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
98798663 CACACCAAGC
*
98798673 AAGGGTATAATCGTCAT
1 AAGGGCATAATCGTCAT
98798690 AAGGGCATAATCGTCAT
1 AAGGGCATAATCGTCAT
98798707 TCTACCATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (17 bp):
AAGGGCATAATCGTCAT
Found at i:98802781 original size:40 final size:40
Alignment explanation
Indices: 98802736--98802902 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
98802726 CGGAATATAA
*
98802736 CCGGATATAAGCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * *
98802776 CCGGATAGAATG-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
98802816 CCGGATAT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
98802856 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
98802895 CCGGATAT
1 CCGGATAT
98802903 CATTCAATTT
Statistics
Matches: 107, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 14 0.13
40 89 0.83
41 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:98802886 original size:80 final size:79
Alignment explanation
Indices: 98802752--98802902 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
98802742 ATAAGCATGT
*
98802752 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
98802817 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
98802832 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
98802895 CCGGATAT
64 CCGGATAT
98802903 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:98810862 original size:40 final size:40
Alignment explanation
Indices: 98810734--98810884 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
98810724 ATAAGCATGT
* * *
98810734 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** *
98810774 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
98810814 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
98810854 GCATAATTGTCTTCGGG-GTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
98810885 CATTCAATTT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 14 0.15
40 77 0.83
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:98813098 original size:22 final size:22
Alignment explanation
Indices: 98813071--98813135 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 22
98813061 CGCTAAGTTA
98813071 ACAGGACGGCTCAACGCCGTAG
1 ACAGGACGGCTCAACGCCGTAG
* * *
98813093 ATAGGATGGCTCAACGCCATAG
1 ACAGGACGGCTCAACGCCGTAG
* * *
98813115 ACAGGACAGCTAAAGGCCGTA
1 ACAGGACGGCTCAACGCCGTA
98813136 AATATCACAG
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.32, C:0.26, G:0.29, T:0.12
Consensus pattern (22 bp):
ACAGGACGGCTCAACGCCGTAG
Found at i:98813398 original size:27 final size:27
Alignment explanation
Indices: 98813368--98813423 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
98813358 GGACATAATC
*
98813368 GTCATTCTAC-CATATAGGGGTATTACG
1 GTCATTCTACAC-TATAAGGGTATTACG
* *
98813395 GTCATTTTACACTATAAGGGTATTTCG
1 GTCATTCTACACTATAAGGGTATTACG
98813422 GT
1 GT
98813424 GATTTCACAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (27 bp):
GTCATTCTACACTATAAGGGTATTACG
Found at i:98817247 original size:12 final size:12
Alignment explanation
Indices: 98817230--98817256 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
98817220 CGTATAACTC
98817230 AAAAATAAAATA
1 AAAAATAAAATA
98817242 AAAAATAAAATA
1 AAAAATAAAATA
98817254 AAA
1 AAA
98817257 CTTATTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAAATAAAATA
Found at i:98821527 original size:30 final size:30
Alignment explanation
Indices: 98821472--98821631 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
98821462 ATAGTGAATC
98821472 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
98821501 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
98821531 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
98821560 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
98821588 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
98821618 CGCACACTTAGTGC
1 CGCACACTTAGTGC
98821632 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:98821564 original size:59 final size:57
Alignment explanation
Indices: 98821472--98821631 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
98821462 ATAGTGAATC
*
98821472 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
98821531 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
98821588 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
98821632 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:98824756 original size:27 final size:28
Alignment explanation
Indices: 98824726--98824795 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
98824716 ATAGTGAATC
*
98824726 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
98824753 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
98824781 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
98824796 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:98824867 original size:42 final size:42
Alignment explanation
Indices: 98824803--98824909 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
98824793 GCTGTACAAT
* *
98824803 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
98824845 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
98824887 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
98824910 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:98829505 original size:20 final size:21
Alignment explanation
Indices: 98829480--98829518 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
98829470 TTTATGTGTG
98829480 TTTGAATG-ATGCCCAAATCC
1 TTTGAATGTATGCCCAAATCC
98829500 TTTGAATGTATGCCCAAAT
1 TTTGAATGTATGCCCAAAT
98829519 GGTATGGCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (21 bp):
TTTGAATGTATGCCCAAATCC
Found at i:98832533 original size:42 final size:42
Alignment explanation
Indices: 98832487--98832575 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 42
98832477 CTATATGAAG
* *
98832487 TCTCATATCAATTCCATATCTCAGATATGGTCTTACACAAAA
1 TCTCATACCAATGCCATATCTCAGATATGGTCTTACACAAAA
* * **
98832529 TCTCATACCGATGCCATATCTCATATATGGTCTTACACGTAA
1 TCTCATACCAATGCCATATCTCAGATATGGTCTTACACAAAA
98832571 TCTCA
1 TCTCA
98832576 AAAATAATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (42 bp):
TCTCATACCAATGCCATATCTCAGATATGGTCTTACACAAAA
Found at i:98839554 original size:20 final size:20
Alignment explanation
Indices: 98839529--98839567 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
98839519 AAAGCATATA
98839529 GTTTTGAGGCATTTCATCAT
1 GTTTTGAGGCATTTCATCAT
98839549 GTTTTGAGGCATTTCATCA
1 GTTTTGAGGCATTTCATCA
98839568 CGTCAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.44
Consensus pattern (20 bp):
GTTTTGAGGCATTTCATCAT
Found at i:98840578 original size:66 final size:66
Alignment explanation
Indices: 98840472--98840603 Score: 264
Period size: 66 Copynumber: 2.0 Consensus size: 66
98840462 ATCTTTTTCT
98840472 AGCAAATTAGTGAAAGGCTTAGCTATTTTAGAAAAATCCTTAATAAATCTTCTATAAAAACCAGC
1 AGCAAATTAGTGAAAGGCTTAGCTATTTTAGAAAAATCCTTAATAAATCTTCTATAAAAACCAGC
98840537 A
66 A
98840538 AGCAAATTAGTGAAAGGCTTAGCTATTTTAGAAAAATCCTTAATAAATCTTCTATAAAAACCAGC
1 AGCAAATTAGTGAAAGGCTTAGCTATTTTAGAAAAATCCTTAATAAATCTTCTATAAAAACCAGC
98840603 A
66 A
98840604 TGTCCTAAAA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.29
Consensus pattern (66 bp):
AGCAAATTAGTGAAAGGCTTAGCTATTTTAGAAAAATCCTTAATAAATCTTCTATAAAAACCAGC
A
Found at i:98849254 original size:23 final size:24
Alignment explanation
Indices: 98849228--98849273 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
98849218 GTTGTAAAAT
98849228 TGAAGAAAAAAGCT-TAATTTTTA
1 TGAAGAAAAAAGCTGTAATTTTTA
* * *
98849251 TGAATAAATATGCTGTAATTTTT
1 TGAAGAAAAAAGCTGTAATTTTT
98849274 GTCATGGGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.41, C:0.04, G:0.13, T:0.41
Consensus pattern (24 bp):
TGAAGAAAAAAGCTGTAATTTTTA
Found at i:98852619 original size:37 final size:37
Alignment explanation
Indices: 98852560--98852687 Score: 202
Period size: 37 Copynumber: 3.5 Consensus size: 37
98852550 AGCTCAGACG
* * *
98852560 AAATCTCGACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
98852597 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
98852634 TACTCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
98852671 TAATCTCCACACGTAGT
1 AAATCTCCACACGTAGT
98852688 GTAACACCCC
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 85 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:98854388 original size:47 final size:47
Alignment explanation
Indices: 98854319--98854897 Score: 899
Period size: 47 Copynumber: 12.3 Consensus size: 47
98854309 CCCTTCGGGA
* * * *
98854319 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
98854366 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
98854413 CTTTTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
98854460 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
98854507 CTTATCCCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
98854554 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
98854601 CTTATCCCATATATACACTTTCATATTCATCACA-TGGCCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGG-CCATTAGGC
* * *
98854648 CTTATCACACATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
98854695 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
98854742 CTTATCACACATATGCACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
98854789 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
98854836 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
98854883 CTTATCACACATATA
1 CTTATCACATATATA
98854898 TGTATCTCAT
Statistics
Matches: 483, Mismatches: 47, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
46 2 0.00
47 479 0.99
48 2 0.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:98854484 original size:94 final size:94
Alignment explanation
Indices: 98854319--98854897 Score: 1007
Period size: 94 Copynumber: 6.2 Consensus size: 94
98854309 CCCTTCGGGA
* * * * *
98854319 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCAC
98854384 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
98854413 CTTTTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCAC
98854478 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
98854507 CTTATCCCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCAC
98854572 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
98854601 CTTATCCCATATATACACTTTCATATTCATCACA-TGGCCCATTCGGCCTTATCACACATATGCA
1 CTTATCACATATATACACTTTCACATTCATCACATTGG-CCATTCGGCCTTATCACACATATGCA
98854665 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
98854695 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCAC
*
98854760 TTTCACATTCATCACATTGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
98854789 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCAC
*
98854854 TTTCACATTCATCACATCGGCCATTCGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
98854883 CTTATCACACATATA
1 CTTATCACATATATA
98854898 TGTATCTCAT
Statistics
Matches: 465, Mismatches: 18, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
93 3 0.01
94 459 0.99
95 3 0.01
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:98854845 original size:22 final size:22
Alignment explanation
Indices: 98854770--98854845 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
98854760 TTTCACATTC
98854770 ATCACATTGGCCATTAGGCCTT
1 ATCACATTGGCCATTAGGCCTT
*** *** *
98854792 ATCACATATATACACTTTCACATT
1 ATCACAT-TGGCCA-TTAGGCCTT
98854816 CATCACATTGGCCATTAGGCCTT
1 -ATCACATTGGCCATTAGGCCTT
98854839 ATCACAT
1 ATCACAT
98854846 ATATACACTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTAGGCCTT
Found at i:98858430 original size:25 final size:25
Alignment explanation
Indices: 98858393--98858443 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
98858383 AAGGAATTCG
98858393 CACACACACAGTG-TCTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
* *
98858418 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
98858443 C
1 C
98858444 GTTATTACAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 20 0.87
26 3 0.13
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:98858667 original size:40 final size:40
Alignment explanation
Indices: 98858608--98858701 Score: 107
Period size: 40 Copynumber: 2.4 Consensus size: 40
98858598 GAATACACGT
* * * * *
98858608 CACCAGCATGATTGTTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGATCTTCGGGACATAGCACGGATATAA
** *
98858648 CACCAGCACGAATGATCTTCGGGGTATAGCACGGATATAT
1 CACCAGCACGAATGATCTTCGGGACATAGCACGGATATAA
*
98858688 CACTAGCACGAATG
1 CACCAGCACGAATG
98858702 CTGTAACACC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (40 bp):
CACCAGCACGAATGATCTTCGGGACATAGCACGGATATAA
Found at i:98860190 original size:39 final size:40
Alignment explanation
Indices: 98860095--98860246 Score: 157
Period size: 40 Copynumber: 3.8 Consensus size: 40
98860085 GGATATAGCG
* * * * **
98860095 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGTA
* * *
98860135 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGG-A
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGTA
* *
98860174 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGTA
*
98860214 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
98860247 CATCATTCGA
Statistics
Matches: 92, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
38 3 0.03
39 31 0.34
40 47 0.51
41 11 0.12
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGTA
Found at i:98861987 original size:40 final size:40
Alignment explanation
Indices: 98861930--98862602 Score: 1053
Period size: 40 Copynumber: 16.9 Consensus size: 40
98861920 GGCTGTCACA
* * * *
98861930 AATGCTCTTCGGAACTTAGTCCGGATACACCACTAGCATG
1 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
*
98861970 AATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACG
1 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
* *
98862010 AATGCTCTTCGGAACTTAGTCCC-GATACATCACTAGCATG
1 AATGCTCTTCGGGACTTAG-CCCGGATACATCACTAGCACG
*
98862050 AATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACG
1 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
* *
98862090 AATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACG
1 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
*
98862130 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATG
1 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
* *
98862170 AATGCTCTCCGGGACTTAGCCCGGATATATCACTAGCACG
1 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
* * *
98862210 AATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCATG
1 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
* *
98862250 AATGCTCTTCGGGACTTAGCCCGAATATATCACTAGCACG
1 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
* * *
98862290 AATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCATG
1 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
*
98862330 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATG
1 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
98862370 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
1 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
* * * * *
98862410 AATGCTCTTCAGAACTTAGTCTGGATATATCACTAGCACG
1 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
*
98862450 AATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACG
1 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
98862490 AATGC-CTTCGGGACTTAGCCCGGATACATCACTAGCACG
1 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
*
98862529 AATGCTCTTCGGGACTTAGCCCAGATACATCACTAGCACG
1 AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
*
98862569 AATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AATGCTCTTCGGGACTTAGCCCGGATACATCACT
98862603 TTCAATTCTC
Statistics
Matches: 579, Mismatches: 51, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
39 41 0.07
40 535 0.92
41 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
Found at i:98863924 original size:37 final size:37
Alignment explanation
Indices: 98863865--98864010 Score: 229
Period size: 37 Copynumber: 3.9 Consensus size: 37
98863855 AGCTCAGACG
* *
98863865 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
98863902 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
98863939 TACTCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
98863976 TAATCTCCACACGTAGTTATCGGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
98864011 ATATATTTCC
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:98864294 original size:47 final size:47
Alignment explanation
Indices: 98864215--98864502 Score: 423
Period size: 47 Copynumber: 6.1 Consensus size: 47
98864205 TATATATATT
* * * *
98864215 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
98864262 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
98864309 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
98864356 TCACATAGGCCATTTGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
98864403 CCACATTGGCCATTCGGCCTTATCACACATATGCTTGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
98864450 TCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
98864497 TCACAT
1 TCACAT
98864503 AAAATCTAAA
Statistics
Matches: 214, Mismatches: 27, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 214 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:98864391 original size:141 final size:141
Alignment explanation
Indices: 98864215--98864503 Score: 497
Period size: 141 Copynumber: 2.0 Consensus size: 141
98864205 TATATATATT
* *
98864215 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
* *
98864280 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCAT
66 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
98864345 GTTCACATTCA
131 ATTCACATTCA
* * *
98864356 TCACATAGGCCATTTGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
*
98864421 CTTATCACACATATGCTTGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
66 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
98864486 ATTCACATTCA
131 ATTCACATTCA
98864497 TCACATA
1 TCACATA
98864504 AAATCTAAAT
Statistics
Matches: 139, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
141 139 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (141 bp):
TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
ATTCACATTCA
Found at i:98866026 original size:2 final size:2
Alignment explanation
Indices: 98866019--98866045 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
98866009 CTAAATTCAT
98866019 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
98866046 CTAAACACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:98868681 original size:40 final size:40
Alignment explanation
Indices: 98868636--98868802 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
98868626 CGGAATATAA
98868636 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
98868676 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
98868716 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
98868756 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
98868795 CCGGATAT
1 CCGGATAT
98868803 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:98880750 original size:18 final size:18
Alignment explanation
Indices: 98880727--98880762 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
98880717 AGAATAATTT
98880727 TGTAAATGACACATTGGA
1 TGTAAATGACACATTGGA
98880745 TGTAAATGACACATTGGA
1 TGTAAATGACACATTGGA
98880763 GAACTCTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.28
Consensus pattern (18 bp):
TGTAAATGACACATTGGA
Found at i:98883057 original size:46 final size:46
Alignment explanation
Indices: 98883004--98883173 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
98882994 GGCATCTGAA
98883004 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTGTCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTGTCCGAG
* * ** *
98883050 CTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACT--G--TCCGAG
*
98883097 CTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC-G-CCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-ACTGTCC-GAG
* *
98883143 CTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98883174 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
43 7 0.07
45 5 0.05
46 53 0.52
47 27 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.31
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTGTCCGAG
Found at i:98883153 original size:93 final size:93
Alignment explanation
Indices: 98882994--98883166 Score: 287
Period size: 93 Copynumber: 1.9 Consensus size: 93
98882984 AGGATATTTG
* *
98882994 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTGTCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTGTCCGAGCTCATTGAG
98883059 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
98883087 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC-G-CCTGAGCTCATTG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-ACTGTCC-GAGCTCATTG
98883150 AGTTGAGTCCGAGTTCG
64 AGTTGAGTCCGAGTTCG
98883167 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
92 2 0.03
93 71 0.95
94 2 0.03
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTGTCCGAGCTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:98886277 original size:40 final size:40
Alignment explanation
Indices: 98886169--98886378 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
98886159 CGGGATTTAA
* * * * *
98886169 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
98886209 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
98886249 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
98886289 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
98886329 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
98886369 CCGGATATAT
1 CCGGATATAT
98886379 ATTCTTCGGA
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:98894424 original size:40 final size:40
Alignment explanation
Indices: 98894316--98894564 Score: 367
Period size: 40 Copynumber: 6.2 Consensus size: 40
98894306 CGGGATTTAA
* * * * *
98894316 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
98894356 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
98894396 CCGGATATATCCACTCGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
98894435 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
98894475 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
98894515 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
98894555 CCGGATATAT
1 CCGGATATAT
98894565 TTCCAATGTT
Statistics
Matches: 190, Mismatches: 16, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
39 39 0.21
40 151 0.79
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:98894515 original size:119 final size:120
Alignment explanation
Indices: 98894316--98894564 Score: 367
Period size: 119 Copynumber: 2.1 Consensus size: 120
98894306 CGGGATTTAA
* * * * * * *
98894316 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAACCCGGATTTGGTGACTTGCACAAAGG
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCATAACCCGGATATGATAACTCGCACAAAGG
*
98894381 CCTTCGGGTCTTAGCCCGGATATATCCACTCGCACGAATGCCTTC-GGTCTTAGC
66 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * *
98894435 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT-ATCAACTCGCACGAAT
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCATAACCCGGATATGAT-AACTCGCACAAAG
98894499 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
65 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
98894555 CCGGATATAT
1 CCGGATATAT
98894565 TTCCAATGTT
Statistics
Matches: 116, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
118 1 0.01
119 96 0.83
120 19 0.16
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (120 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCATAACCCGGATATGATAACTCGCACAAAGG
CCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:98904472 original size:40 final size:40
Alignment explanation
Indices: 98904399--98904606 Score: 186
Period size: 40 Copynumber: 5.2 Consensus size: 40
98904389 CAATTGAATC
* * * * * *
98904399 ATATCCGGGCTAAGTCCTGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * * *
98904439 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* **
98904479 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
* * * **
98904519 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * **
98904559 CTATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
98904599 ATATCCGG
1 ATATCCGG
98904607 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
39 5 0.04
40 133 0.95
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
Found at i:98904542 original size:80 final size:80
Alignment explanation
Indices: 98904400--98904606 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
98904390 AATTGAATCA
* * * ** * ** * *
98904400 TATCCGGGCTAAGTCCTGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
98904465 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* *
98904478 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGC
* *
98904543 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
98904560 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGG
98904607 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
78 1 0.01
80 104 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:98910890 original size:6 final size:6
Alignment explanation
Indices: 98910879--98910929 Score: 95
Period size: 6 Copynumber: 8.7 Consensus size: 6
98910869 TCCTCTTATC
98910879 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
98910926 TTTT
1 TTTT
98910930 ATTATTTTCT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.11
6 39 0.89
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:98917079 original size:39 final size:40
Alignment explanation
Indices: 98917017--98917240 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
98917007 CCGTACAAAG
* * * *
98917017 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATCACAATTTGCACAATT
98917057 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATCACAATTTGCACAATT
* * *
98917096 ACCTTCGGG-CTTAGCCCAGATATCACAATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATCACAATTTGCACAATT
*
98917135 GCCTTCGGGTCTTAGCCCGGATATCACAATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATCACAATTTGCACAATT
*
98917175 GCCTTCGGGTCTTAGCCCGGATGTAGTCAC---TAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGA--TA-TCACAATTTGCACAATT
* *
98917215 GCCTTCGGGTCTTAACCCGGGTATCA
1 GCCTTCGGGTCTTAGCCCGGATATCA
98917241 TTCAAATACT
Statistics
Matches: 168, Mismatches: 12, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
37 3 0.02
38 2 0.01
39 71 0.42
40 86 0.51
42 2 0.01
43 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:98917101 original size:79 final size:79
Alignment explanation
Indices: 98917018--98917240 Score: 290
Period size: 79 Copynumber: 2.8 Consensus size: 79
98917008 CGTACAAAGG
* *
98917018 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 CCTTCGGG-CTTAGCCCGGATATCACAACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATCA
*
98917082 CAATTTGCACAATTA
65 CAATTTGCACAAATA
* * * *
98917097 CCTTCGGGCTTAGCCCAGATATCACAATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATCAC
1 CCTTCGGGCTTAGCCCGGATATCACAACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATCAC
*
98917162 AATTTGCACAAATG
66 AATTTGCACAAATA
* * *
98917176 CCTTCGGGTCTTAGCCCGGATGT-AGTC-ACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTAT
1 CCTTCGGG-CTTAGCCCGGATATCA--CAACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
98917239 CA
63 CA
98917241 TTCAAATACT
Statistics
Matches: 126, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
78 34 0.27
79 46 0.37
80 45 0.36
81 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.26
Consensus pattern (79 bp):
CCTTCGGGCTTAGCCCGGATATCACAACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATCAC
AATTTGCACAAATA
Found at i:98922665 original size:2 final size:2
Alignment explanation
Indices: 98922658--98922687 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
98922648 CTTACTCTTC
98922658 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
98922688 TCTTACCACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:98925837 original size:42 final size:43
Alignment explanation
Indices: 98925790--98925902 Score: 142
Period size: 42 Copynumber: 2.7 Consensus size: 43
98925780 TGTGTTCTCC
*
98925790 TGTAAGACCACATCTGGGACGTTGGCATCGATGTGTGATT-CA
1 TGTAAGACCACATCTGGGACGTTGGCATCGATGTCTGATTACA
* *
98925832 TGTAAGACTC-TATCTAGGACAGTT-GCATCGATGTCTGATTACA
1 TGTAAGAC-CACATCTGGGAC-GTTGGCATCGATGTCTGATTACA
* *
98925875 TGTAAGACCACGTCCGGGACGTTGGCAT
1 TGTAAGACCACATCTGGGACGTTGGCAT
98925903 TGTACGATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
42 35 0.59
43 24 0.41
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (43 bp):
TGTAAGACCACATCTGGGACGTTGGCATCGATGTCTGATTACA
Found at i:98927793 original size:27 final size:27
Alignment explanation
Indices: 98927760--98927964 Score: 234
Period size: 27 Copynumber: 7.6 Consensus size: 27
98927750 AAAGTACTCC
*
98927760 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
98927787 -TAGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
98927814 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
98927840 CTAATTTACATAATTACCATTTTACCCC
1 C-GATTTACAGAATTACCGTTTTACCCT
* * *
98927868 CGATTTACATAAATATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
98927895 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
98927922 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
98927949 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
98927965 TAAAATACCC
Statistics
Matches: 150, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
26 2 0.01
27 146 0.97
28 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:98929231 original size:25 final size:25
Alignment explanation
Indices: 98929203--98929250 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
98929193 TTATACCATG
* * *
98929203 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
98929228 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
98929251 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:98929353 original size:20 final size:20
Alignment explanation
Indices: 98929293--98929353 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
98929283 ATAAATATGG
*
98929293 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
98929313 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
98929333 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
98929353 T
1 T
98929354 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:98929430 original size:24 final size:24
Alignment explanation
Indices: 98929403--98929569 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
98929393 GAGGAAGTGA
98929403 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
98929427 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
98929451 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
98929475 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
98929498 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
98929522 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
98929546 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
98929570 ATGATAAAGC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 101 0.75
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:98929520 original size:71 final size:71
Alignment explanation
Indices: 98929403--98929570 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
98929393 GAGGAAGTGA
98929403 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
98929468 AGTTATC
65 AGTTATC
** *
98929475 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
98929540 GTTATT
66 GTTATC
*
98929546 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
98929571 TGATAAAGCA
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 54 0.61
72 35 0.39
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:98929799 original size:31 final size:31
Alignment explanation
Indices: 98929761--98929855 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
98929751 CGTTTACAGT
98929761 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
98929792 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
98929823 AAATGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
98929854 AA
1 AA
98929856 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:98932488 original size:12 final size:12
Alignment explanation
Indices: 98932471--98932513 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
98932461 GCCCGAAAAG
98932471 AATTTTTATTTT
1 AATTTTTATTTT
*
98932483 AATTTTTACTTTC
1 AATTTTTA-TTTT
*
98932496 AA-TTTTAATTT
1 AATTTTTATTTT
98932507 AATTTTT
1 AATTTTT
98932514 TTATGTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 4 0.15
12 17 0.65
13 5 0.19
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (12 bp):
AATTTTTATTTT
Found at i:98934256 original size:2 final size:2
Alignment explanation
Indices: 98934249--98934278 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
98934239 GTTTTGGATC
*
98934249 CT CT CT CT CT CT CT CT CT TT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
98934279 TAATCGATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
CT
Found at i:98942073 original size:12 final size:12
Alignment explanation
Indices: 98942056--98942080 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98942046 ATATACTTCT
98942056 AAAAAATAACTA
1 AAAAAATAACTA
98942068 AAAAAATAACTA
1 AAAAAATAACTA
98942080 A
1 A
98942081 CTTCCTTAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAAATAACTA
Found at i:98943027 original size:24 final size:24
Alignment explanation
Indices: 98942956--98943029 Score: 67
Period size: 24 Copynumber: 3.1 Consensus size: 24
98942946 CTTGTAATAC
* *
98942956 TTATACAATTAAAAATAATTAGAA
1 TTATACATTTAAAAATAATTATAA
* ** * ** *
98942980 TTTTTTATTTAAAATTTGTAATAA
1 TTATACATTTAAAAATAATTATAA
98943004 TTATACATTTAAAAATAATTATAA
1 TTATACATTTAAAAATAATTATAA
98943028 TT
1 TT
98943030 TTTACAATTA
Statistics
Matches: 34, Mismatches: 16, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (24 bp):
TTATACATTTAAAAATAATTATAA
Found at i:98943243 original size:140 final size:143
Alignment explanation
Indices: 98943016--98943286 Score: 345
Period size: 140 Copynumber: 1.9 Consensus size: 143
98943006 ATACATTTAA
98943016 AAATAATTATAATTTTTACAATTATTAGTTAAAAAGTTGTGCTAATTTTAAAATAGAATTAGTAT
1 AAATAATTATAATTTTTACAATTATTAGTTAAAAAGTTGTGCTAATTTTAAAATAGAATTAGTAT
98943081 TTGAATAAAACTCTAAGCATAAAATACA-GGAAACAA-TTATGATA-AT-ATTTAAATTACAATC
66 TTGAATAAAACTCTAAGCATAAAATACAGGGAAA-AATTTATGATATATAATTTAAATTACAATC
98943142 ATTTATTATTTTTT
130 ATTTATTATTTTTT
* * ** * * * *
98943156 AAATAATTATCATTTTTACAATTATTTGTTTCAAGGTTGTGCTAATTTTAAAATATAGTTATTAA
1 AAATAATTATAATTTTTACAATTATTAGTTAAAAAGTTGTGCTAATTTTAAAATAGAATTAGT-A
* * * * *
98943221 TTT-AATAGAATTTTAAGTATAAAATATAGGGAAAAATTTTATGATATTTATAATTTAAATTACA
65 TTTGAATAAAACTCTAAGCATAAAATACAGGGAAAAA-TTTATGATA--TATAATTTAAATTACA
98943285 AT
127 AT
98943287 TACAATTATT
Statistics
Matches: 110, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
140 77 0.70
141 9 0.08
142 8 0.07
145 2 0.02
146 14 0.13
ACGTcount: A:0.44, C:0.05, G:0.08, T:0.43
Consensus pattern (143 bp):
AAATAATTATAATTTTTACAATTATTAGTTAAAAAGTTGTGCTAATTTTAAAATAGAATTAGTAT
TTGAATAAAACTCTAAGCATAAAATACAGGGAAAAATTTATGATATATAATTTAAATTACAATCA
TTTATTATTTTTT
Found at i:98945107 original size:34 final size:34
Alignment explanation
Indices: 98945064--98945129 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
98945054 AGTCAAATGC
* * *
98945064 AGTTTGGGCCTAATCCCATTTCAGTCTCAGTAGT
1 AGTTCGGGCCTAAGCCCATCTCAGTCTCAGTAGT
* *
98945098 AGTTCGGGCCTTAGCCCATCTCAGTTTCAGTA
1 AGTTCGGGCCTAAGCCCATCTCAGTCTCAGTA
98945130 TTAGATATGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.33
Consensus pattern (34 bp):
AGTTCGGGCCTAAGCCCATCTCAGTCTCAGTAGT
Found at i:98949153 original size:12 final size:12
Alignment explanation
Indices: 98949136--98949161 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
98949126 TTGACATCTC
98949136 ATATGATATTTG
1 ATATGATATTTG
98949148 ATATGATATTTG
1 ATATGATATTTG
98949160 AT
1 AT
98949162 GCATTTCCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (12 bp):
ATATGATATTTG
Found at i:98949451 original size:28 final size:28
Alignment explanation
Indices: 98949419--98949486 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 28
98949409 AGTAAGTCTG
98949419 CACACTTAGTGCT-TA-ATAGTCAAACTCA
1 CACACTTAGTGCTATACA-A-TCAAACTCA
* *
98949447 CACACTTAGTGCTATACAATTAAACTCG
1 CACACTTAGTGCTATACAATCAAACTCA
98949475 CACACTTAGTGC
1 CACACTTAGTGC
98949487 CAATCTCATT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
28 32 0.89
29 3 0.08
30 1 0.03
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (28 bp):
CACACTTAGTGCTATACAATCAAACTCA
Found at i:98954628 original size:25 final size:25
Alignment explanation
Indices: 98954574--98954629 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
98954564 GCCTAAAGTG
* * *
98954574 TTTTCACATTATACTAGTTACTGTA
1 TTTTCAAAATATACTAGTTACAGTA
*
98954599 GTTTCAAAATATACTA-TCTACAGTA
1 TTTTCAAAATATACTAGT-TACAGTA
98954624 TTTTCA
1 TTTTCA
98954630 GTTTAAACTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 1 0.04
25 24 0.96
ACGTcount: A:0.32, C:0.16, G:0.07, T:0.45
Consensus pattern (25 bp):
TTTTCAAAATATACTAGTTACAGTA
Found at i:98962625 original size:37 final size:37
Alignment explanation
Indices: 98962584--98962657 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
98962574 TTTGACTTTC
98962584 TTCTTTTCATAAATTAAACTCATTTGTTTGAATTCAA
1 TTCTTTTCATAAATTAAACTCATTTGTTTGAATTCAA
98962621 TTCTTTTCATAAATTAAACTCATTTGTTTGAATTCAA
1 TTCTTTTCATAAATTAAACTCATTTGTTTGAATTCAA
98962658 CTTTTATTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.32, C:0.14, G:0.05, T:0.49
Consensus pattern (37 bp):
TTCTTTTCATAAATTAAACTCATTTGTTTGAATTCAA
Found at i:98962659 original size:19 final size:19
Alignment explanation
Indices: 98962595--98962659 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 19
98962585 TCTTTTCATA
98962595 AATTAAACTCATTTGTTTG
1 AATTAAACTCATTTGTTTG
* * * *
98962614 AATTCAATTC-TTT-TCATA
1 AATTAAACTCATTTGT-TTG
98962632 AATTAAACTCATTTGTTTG
1 AATTAAACTCATTTGTTTG
*
98962651 AATTCAACT
1 AATTAAACT
98962660 TTTATTTTTA
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 1 0.03
18 12 0.35
19 20 0.59
20 1 0.03
ACGTcount: A:0.34, C:0.14, G:0.06, T:0.46
Consensus pattern (19 bp):
AATTAAACTCATTTGTTTG
Found at i:98972712 original size:17 final size:18
Alignment explanation
Indices: 98972670--98972718 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
98972660 AGTTGAAAAG
98972670 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
98972689 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
98972706 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
98972719 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Done.