Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 317 of 433
Found at i:98973600 original size:40 final size:40
Alignment explanation
Indices: 98973534--98973700 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
98973524 AAATTGAATG
* * *
98973534 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
98973573 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
98973613 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
98973653 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
98973693 ATATCCGG
1 ATATCCGG
98973701 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:98980709 original size:17 final size:18
Alignment explanation
Indices: 98980667--98980715 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
98980657 AGTTGAAAAG
98980667 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
98980686 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
98980703 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
98980716 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:98981601 original size:40 final size:40
Alignment explanation
Indices: 98981535--98981701 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
98981525 AAATTGAATG
* * *
98981535 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
98981574 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
98981614 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
98981654 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
98981694 ATATCCGG
1 ATATCCGG
98981702 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:98985443 original size:20 final size:20
Alignment explanation
Indices: 98985403--98985441 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
98985393 GCATTACTAG
98985403 ACATTGTATGATTATAGAAA
1 ACATTGTATGATTATAGAAA
98985423 ACATT-TATGA-TATAGAAA
1 ACATTGTATGATTATAGAAA
98985441 A
1 A
98985442 AATAATTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
19 5 0.26
20 5 0.26
ACGTcount: A:0.49, C:0.05, G:0.13, T:0.33
Consensus pattern (20 bp):
ACATTGTATGATTATAGAAA
Found at i:98985762 original size:14 final size:15
Alignment explanation
Indices: 98985743--98985778 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
98985733 CCTACAAATG
98985743 ACTAAAAT-TATAAA
1 ACTAAAATATATAAA
98985757 ACTAAAATATATAAA
1 ACTAAAATATATAAA
*
98985772 ATTAAAA
1 ACTAAAA
98985779 AAACAAGTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.28
Consensus pattern (15 bp):
ACTAAAATATATAAA
Found at i:98987061 original size:10 final size:10
Alignment explanation
Indices: 98987034--98987076 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
98987024 CTTTCTCAAC
*
98987034 AAAAATTACA
1 AAAAATTTCA
98987044 AAAAATTTCA
1 AAAAATTTCA
98987054 AAAAATTT-A
1 AAAAATTTCA
98987063 TAAAAATTTCA
1 -AAAAATTTCA
98987074 AAA
1 AAA
98987077 TTTATCTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
9 1 0.03
10 28 0.93
11 1 0.03
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (10 bp):
AAAAATTTCA
Found at i:98993098 original size:29 final size:29
Alignment explanation
Indices: 98993065--98993224 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
98993055 GTGACGAGAT
98993065 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
98993094 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
98993123 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
98993152 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
98993181 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
98993210 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
98993225 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:99001184 original size:29 final size:29
Alignment explanation
Indices: 99001151--99001281 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
99001141 GTGACGAGAT
99001151 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
99001180 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
99001209 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
99001238 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
99001267 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
99001282 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:99004181 original size:55 final size:55
Alignment explanation
Indices: 99004121--99004233 Score: 138
Period size: 55 Copynumber: 2.1 Consensus size: 55
99004111 CGTGTGCAAC
* * * *
99004121 ACTGACTT-TAGGGCACGGCCATGACACATGCTCGTGTGGCTTACCCGTGGATAAT
1 ACTGACTTATA-GACACGGCCATGACACATGCCCGTGTGGCCTACCCGTGGACAAT
** * *
99004176 ACTGACTTATAGACACGGCTTTGTCACATGCCCGTGTGGCCTACCTGTGGACAAT
1 ACTGACTTATAGACACGGCCATGACACATGCCCGTGTGGCCTACCCGTGGACAAT
99004231 ACT
1 ACT
99004234 TGTAACACCC
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
55 47 0.96
56 2 0.04
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.27
Consensus pattern (55 bp):
ACTGACTTATAGACACGGCCATGACACATGCCCGTGTGGCCTACCCGTGGACAAT
Found at i:99005311 original size:27 final size:27
Alignment explanation
Indices: 99005278--99005751 Score: 598
Period size: 27 Copynumber: 17.6 Consensus size: 27
99005268 AAAGTACTCC
99005278 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
99005305 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
99005332 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
99005359 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
99005386 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
99005413 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
99005440 C-AGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
99005467 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
99005494 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
99005521 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
99005548 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
99005575 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
99005602 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * * *
99005629 -AATTTACATAATTATCATTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* *
99005655 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
99005682 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
99005709 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
99005736 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
99005752 TAAAATACCC
Statistics
Matches: 398, Mismatches: 40, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
26 25 0.06
27 369 0.93
28 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:99007011 original size:25 final size:25
Alignment explanation
Indices: 99006981--99007028 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
99006971 TTATAATATT
* *
99006981 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
99007006 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
99007029 GTTTATACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:99007095 original size:20 final size:20
Alignment explanation
Indices: 99007072--99007155 Score: 150
Period size: 20 Copynumber: 4.2 Consensus size: 20
99007062 TAAACATGGT
99007072 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
99007092 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
99007112 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
99007132 ATGTATGATATGCACATGAG
1 ATGTATGATATGCACATGAC
99007152 ATGT
1 ATGT
99007156 TCATAAATGC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:99007112 original size:11 final size:11
Alignment explanation
Indices: 99007076--99007150 Score: 63
Period size: 11 Copynumber: 7.4 Consensus size: 11
99007066 CATGGTATGT
99007076 ATGATATGCAC
1 ATGATATGCAC
* *
99007087 ATGACATG--T
1 ATGATATGCAC
99007096 ATGATATGCAC
1 ATGATATGCAC
*
99007107 ATGATATG--T
1 ATGATATGCAC
99007116 ATGATATGCAC
1 ATGATATGCAC
* *
99007127 ATGACATG--T
1 ATGATATGCAC
99007136 ATGATATGCAC
1 ATGATATGCAC
99007147 ATGA
1 ATGA
99007151 GATGTTCATA
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 22 0.46
11 26 0.54
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:99007260 original size:24 final size:24
Alignment explanation
Indices: 99007202--99007342 Score: 189
Period size: 24 Copynumber: 6.0 Consensus size: 24
99007192 GAGGAAGTGA
99007202 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
99007225 TAAAGGGTTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
99007249 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
99007273 -AAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
99007296 AAAAGGGCTTTTTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
99007320 AAAAGAGGC-TAGGCCCCAGTTAT
1 AAAAG-GGCTTATGCCCCAGTTAT
99007343 ATGATAAAGC
Statistics
Matches: 104, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
23 43 0.41
24 58 0.56
25 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:99007271 original size:47 final size:47
Alignment explanation
Indices: 99007201--99007343 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
99007191 GGAGGAAGTG
*
99007201 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGTTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
99007248 CAAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* * *
99007295 AAAAAGGGCTTTTTCCCCAGTTATTAAAAGAGGC-TAGGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATT-AAAG-GGCTTATGCCCCAGTTAT
99007343 A
1 A
99007344 TGATAAAGCA
Statistics
Matches: 86, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
47 65 0.76
48 18 0.21
49 3 0.03
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:99010282 original size:27 final size:27
Alignment explanation
Indices: 99010249--99010720 Score: 571
Period size: 27 Copynumber: 17.6 Consensus size: 27
99010239 AAAGTACTCC
*
99010249 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
99010276 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
99010303 CGATTTGTAAAATTACCGTTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
99010329 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
99010356 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
99010383 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
99010410 C-AGTTTATAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
99010437 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
99010464 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
99010491 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
99010518 CGATTTACAGAATTACCGTTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
99010544 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
99010571 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * * *
99010598 -AATTTACATAATTATCATTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* *
99010624 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
99010651 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
99010678 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
99010705 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
99010721 TAAAATACCC
Statistics
Matches: 391, Mismatches: 43, Indels: 22
0.86 0.09 0.05
Matches are distributed among these distances:
25 1 0.00
26 68 0.17
27 318 0.81
28 4 0.01
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:99010357 original size:80 final size:81
Alignment explanation
Indices: 99010249--99010720 Score: 600
Period size: 80 Copynumber: 5.9 Consensus size: 81
99010239 AAAGTACTCC
* **
99010249 CGATTTATAGAATTACCGTTTTACCCTCAG-TTTATAGAATTACTGTTTTACCCTCGATTTGTAA
1 CGATTTATAGAATTACCGTTTTACCCT-AGATTTACAGAATTACTGTTTTACCCTCGATTTACAA
99010313 AATTACCGTTTTA-CCT
65 AATTACCGTTTTACCCT
* * *
99010329 CGATTTACAGAATTACCGTTTTACCCTCAG-TTTACAGAATTACTATTTTACCCTCGATTTACAG
1 CGATTTATAGAATTACCGTTTTACCCT-AGATTTACAGAATTACTGTTTTACCCTCGATTTACAA
*
99010393 AATTACTGTTTTACCCT
65 AATTACCGTTTTACCCT
** * * *
99010410 C-AGTTTATAGAATTATTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTATAG
1 CGA-TTTATAGAATTACCGTTTTACCCTAGATTTACAGAATTACTGTTTTACCCTCGATTTACAA
99010474 AATTACCGTTTTACCCT
65 AATTACCGTTTTACCCT
* * * * *
99010491 CGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTA-CCTC-AGTTTACAG
1 CGATTTATAGAATTACCGTTTTACCCTAGATTTACAGAATTACTGTTTTACCCTCGA-TTTACAA
**
99010554 AATTACTATTTTACCCT
65 AATTACCGTTTTACCCT
* * * *
99010571 CGATTTATAGAATTACCGTTTTACCCTA-ATTTACATAATTA-TCATTTTACCCCCGATTTACAT
1 CGATTTATAGAATTACCGTTTTACCCTAGATTTACAGAATTACT-GTTTTACCCTCGATTTACAA
*
99010634 AATTATCGTTTTACCCT
65 AATTACCGTTTTACCCT
* * *
99010651 CGATTTACAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAA
1 CGATTTATAGAATTACCGTTTTACCCTAGATTTACAGAATTACTGTTTTACCCTCGATTTACAAA
99010716 ATTAC
66 ATTAC
99010721 TAAAATACCC
Statistics
Matches: 340, Mismatches: 42, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
79 18 0.05
80 170 0.50
81 150 0.44
82 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.42
Consensus pattern (81 bp):
CGATTTATAGAATTACCGTTTTACCCTAGATTTACAGAATTACTGTTTTACCCTCGATTTACAAA
ATTACCGTTTTACCCT
Found at i:99010405 original size:107 final size:108
Alignment explanation
Indices: 99010249--99010721 Score: 602
Period size: 107 Copynumber: 4.4 Consensus size: 108
99010239 AAAGTACTCC
* * ** *
99010249 CGATTTATAGAATTACCGTTTTACCCTC-AGTTTATAGAATTACTGTTTTACCCTCGATTTGTAA
1 CGATTTATAGAATTACCGTTTTACCCTCGA-TTTACAAAATTACTGTTTTACCCTCGATTTACAG
*
99010313 AATTACCGTTTTA-CCTCGATTTACAGAATTACCGTTTTACCCT
65 AATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCT
* ** * *
99010356 C-AGTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTC-AGTTTATA
1 CGA-TTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGA-TTTACA
** *
99010419 GAATTATTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCT
64 GAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCT
** *
99010464 CGATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGA
1 CGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGA
*
99010529 ATTACCGTTTTA-CCTC-AGTTTACAGAATTACTATTTTACCCT
66 ATTACCGTTTTACCCTCGA-TTTACAGAATTACTGTTTTACCCT
* * * * *
99010571 CGATTTATAGAATTACCGTTTTACCCT-AATTTACATAATTA-TCATTTTACCCCCGATTTACAT
1 CGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACT-GTTTTACCCTCGATTTACAG
*
99010634 AATTATCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCT
65 AATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCT
* * *
99010678 TGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACT
1 CGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACT
99010722 AAAATACCCT
Statistics
Matches: 317, Mismatches: 37, Indels: 22
0.84 0.10 0.06
Matches are distributed among these distances:
106 42 0.13
107 167 0.53
108 105 0.33
109 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (108 bp):
CGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGA
ATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCT
Found at i:99012057 original size:20 final size:19
Alignment explanation
Indices: 99012034--99012116 Score: 139
Period size: 20 Copynumber: 4.2 Consensus size: 19
99012024 TAAACATGGT
99012034 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
99012053 CATGTATGATATGCACATGA
1 -ATGTATGATATGCACATGA
99012073 TATGTATGATATGCACATGA
1 -ATGTATGATATGCACATGA
99012093 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
99012112 GATGT
1 -ATGT
99012117 TCATAAATGC
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
19 19 0.31
20 42 0.69
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.33
Consensus pattern (19 bp):
ATGTATGATATGCACATGA
Found at i:99012077 original size:40 final size:39
Alignment explanation
Indices: 99012027--99012116 Score: 153
Period size: 40 Copynumber: 2.3 Consensus size: 39
99012017 ATTTTGATAA
*
99012027 ACATGGTATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGA-ATGTATGATATGC
99012067 ACATGATATGTATGATATGCACATGAATGTATGATATGC
1 ACATGATATGTATGATATGCACATGAATGTATGATATGC
*
99012106 ACATGAGATGT
1 ACATGATATGT
99012117 TCATAAATGC
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
39 23 0.48
40 25 0.52
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.32
Consensus pattern (39 bp):
ACATGATATGTATGATATGCACATGAATGTATGATATGC
Found at i:99012218 original size:24 final size:24
Alignment explanation
Indices: 99012162--99012303 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
99012152 GAGGAAGTGA
99012162 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
99012185 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
99012209 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
99012233 -AAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
99012256 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
99012280 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
99012304 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
23 44 0.41
24 53 0.49
25 11 0.10
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:99012231 original size:47 final size:47
Alignment explanation
Indices: 99012161--99012304 Score: 218
Period size: 47 Copynumber: 3.0 Consensus size: 47
99012151 GGAGGAAGTG
99012161 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
99012208 CAAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
99012255 AAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATT-AAAG-GGCTTATGCC-CCAGTTAT
99012304 A
1 A
99012305 TGATAAAGCA
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
47 67 0.76
48 9 0.10
49 12 0.14
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (47 bp):
AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:99015674 original size:239 final size:238
Alignment explanation
Indices: 99015294--99015737 Score: 652
Period size: 239 Copynumber: 1.9 Consensus size: 238
99015284 CGATTTACAG
* * *
99015294 AATTACCGTTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTCGATTTGTAAAATTACCGTAC
1 AATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCGAGTTGTAAAATTACCGTAC
*
99015359 CCTCGATTTACAGAATTACCGTTTTACCCTCGTTACAGAATTACTTTTACCCTCGATTTACATAA
66 CCTCGATTTACAGAATTACCGTTTTACCCTAGTTACAGAATTACTTTTACCCTCGATTTACATAA
*
99015424 TTACTGTTTTACCCTC-AGTTTACAGAATTATTGTTTTACCCTTGATTTACAGAATTACTGTTTT
131 TTACTGTTTTACCCTCGA-TTTACAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTT
99015488 ACCCTCGATTTTTAAGAATTACCGTTTTACCCTCGATTTGTTAA
195 ACCCTCGATTTTTAAGAATTACCGTTTTACCCTCGATTTGTTAA
99015532 AATTACCGTTTTACCCTC-GATTTACAGAATTACCGTTTTA-CCTC-AGTT-TACAGAATTACAT
1 AATTACCGTTTTACCCTCAG-TTTACAGAATTACCGTTTTACCCTCGAGTTGTA-A-AATTAC--
** * * * *
99015593 TTTACCCTCGATTTATAGAATTACCGTTTTACCCTAATTTACATAATTTCATTTTACCC-CGATT
61 CGTACCCTCGATTTACAGAATTACCGTTTTACCCT-AGTTACAGAATTAC-TTTTACCCTCGATT
99015657 TACATAAATT-C-GTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTTGATTTACAGAATTA
124 TACAT-AATTACTGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTTGATTTACAGAATTA
99015720 CTGTTTTACCCTCGATTT
188 CTGTTTTACCCTCGATTT
99015738 ACAAAATTAC
Statistics
Matches: 186, Mismatches: 11, Indels: 17
0.87 0.05 0.08
Matches are distributed among these distances:
235 2 0.01
236 4 0.02
237 11 0.06
238 36 0.19
239 99 0.53
240 22 0.12
241 12 0.06
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.42
Consensus pattern (238 bp):
AATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCGAGTTGTAAAATTACCGTAC
CCTCGATTTACAGAATTACCGTTTTACCCTAGTTACAGAATTACTTTTACCCTCGATTTACATAA
TTACTGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTA
CCCTCGATTTTTAAGAATTACCGTTTTACCCTCGATTTGTTAA
Found at i:99015748 original size:27 final size:27
Alignment explanation
Indices: 99015284--99015747 Score: 514
Period size: 27 Copynumber: 17.6 Consensus size: 27
99015274 AAAGTACTCC
99015284 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
99015311 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
99015338 CGATTTGTAAAATTACCG---TACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
99015362 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
99015389 CG--TTACAGAATTA-C-TTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
99015412 CGATTTACATAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
99015439 C-AGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
99015466 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
99015493 CGATTTTTA-AGAATTACCGTTTTACCCT
1 CGA--TTTACAGAATTACCGTTTTACCCT
** *
99015521 CGATTTGTTAAAATTACCGTTTTACCCT
1 CGATTT-ACAGAATTACCGTTTTACCCT
99015549 CGATTTACAGAATTACCGTTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
99015575 C-AGTTTACAGAATTA-CATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
99015601 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
99015628 -AATTTACATAATT-TCATTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
*
99015652 CGATTTACATAAATT--CGTTTTACCCT
1 CGATTTACA-GAATTACCGTTTTACCCT
*
99015678 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
99015705 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
99015732 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
99015748 TAAAATACCC
Statistics
Matches: 376, Mismatches: 37, Indels: 48
0.82 0.08 0.10
Matches are distributed among these distances:
23 11 0.03
24 22 0.06
25 57 0.15
26 59 0.16
27 176 0.47
28 47 0.12
29 4 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:99015774 original size:54 final size:54
Alignment explanation
Indices: 99015391--99015760 Score: 206
Period size: 52 Copynumber: 7.0 Consensus size: 54
99015381 TTTACCCTCG
* **** *
99015391 TTACAGAATTAC--TTTTACCCTCGATTTACATAATTACTGTTTTACCC-TCAGT
1 TTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGA-T
* * * **** *
99015443 TTACAGAATTATTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTT
1 TTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGA--T
* ** ***** *
99015499 TTA-AGAATTACCGTTTTACCCTCGATTTGTTAAAATTACCGTTTTACCCTCGAT
1 TTACAGAATTACTGTTTTACCCTCGATTT-ACAAAATTACTAAAATACCCTTGAT
* * *** *
99015553 TTACAGAATTACCGTTTTA-CCTC-AGTTTACAGAATTAC-ATTTTACCCTCGAT
1 TTACAGAATTACTGTTTTACCCTCGA-TTTACAAAATTACTAAAATACCCTTGAT
* * * * * *** *
99015605 TTATAGAATTACCGTTTTACCCT-AATTTACATAATTTC-ATTTTACCC-CGAT
1 TTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGAT
* * ****
99015656 TTACATAAATT-C-GTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTTGAT
1 TTACA-GAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGAT
99015709 TTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTG
1 TTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTG
99015761 GTTTGTGAAA
Statistics
Matches: 270, Mismatches: 33, Indels: 28
0.82 0.10 0.08
Matches are distributed among these distances:
50 10 0.04
51 21 0.08
52 78 0.29
53 21 0.08
54 78 0.29
55 38 0.14
56 24 0.09
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (54 bp):
TTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGAT
Found at i:99019382 original size:40 final size:40
Alignment explanation
Indices: 99019337--99019504 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
99019327 CGGAATATAA
99019337 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
99019377 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
99019417 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
99019457 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
99019497 CCGGATAT
1 CCGGATAT
99019505 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:99021618 original size:43 final size:44
Alignment explanation
Indices: 99021545--99021627 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 44
99021535 AAAACTCAAA
* *
99021545 CAAAAACCTAAACCCTAAACCCAAAAAACCCTACTTTAAATACC
1 CAAAAACCTAAACCCTAAAACCAAAAAACCCTAATTTAAATACC
* *
99021589 CAAAACCCT-AACCCTAAAAACC-AATAACCCTAATTTAAA
1 CAAAAACCTAAACCCT-AAAACCAAAAAACCCTAATTTAAA
99021628 AAAATCTAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
43 21 0.62
44 13 0.38
ACGTcount: A:0.51, C:0.33, G:0.00, T:0.17
Consensus pattern (44 bp):
CAAAAACCTAAACCCTAAAACCAAAAAACCCTAATTTAAATACC
Found at i:99021627 original size:21 final size:20
Alignment explanation
Indices: 99021569--99021629 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 20
99021559 CTAAACCCAA
* *
99021569 AAAACCCTACTTTAAATACCC
1 AAAACCCTAATTTAAA-AACC
**
99021590 AAAACCCTAACCCTAAAAACC
1 AAAACCCTAA-TTTAAAAACC
99021611 AATAACCCTAATTTAAAAA
1 AA-AACCCTAATTTAAAAA
99021630 AATCTAGTAC
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
21 20 0.62
22 12 0.38
ACGTcount: A:0.51, C:0.30, G:0.00, T:0.20
Consensus pattern (20 bp):
AAAACCCTAATTTAAAAACC
Found at i:99026214 original size:47 final size:47
Alignment explanation
Indices: 99026160--99026353 Score: 203
Period size: 47 Copynumber: 4.1 Consensus size: 47
99026150 TTAGGATGTT
*
99026160 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCTA
* * *
99026207 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--TGTGTATATA--TGAGATAAGGCCGAATGGCTA
** * *
99026258 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCTA
* * * * * *
99026305 ATGCGA--AATGTGTATGAGATAGATATGAGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAATGTG-TATATATGAGATAAGGCCGAATGGCTA
99026351 ATG
1 ATG
99026354 CGAAACGTGT
Statistics
Matches: 126, Mismatches: 16, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
45 8 0.06
46 27 0.21
47 40 0.32
49 16 0.13
51 35 0.28
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCTA
Found at i:99026261 original size:51 final size:48
Alignment explanation
Indices: 99026160--99026307 Score: 196
Period size: 51 Copynumber: 3.1 Consensus size: 48
99026150 TTAGGATGTT
*
99026160 ATGTGATGAATGTGAA-TGTGTATATATG-AGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACTGT-TATATATGTGGATAAGGCCGAATGGCAA
*
99026207 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-CTGT-TATATATGTG-GATAAGGCCGAATGGCAA
*
99026258 ATGTGATGAATGTGAACATG-TATATATGTGG-TAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAAC-TGTTATATATGTGGATAAGGCCGAATGGCAA
99026305 ATG
1 ATG
99026308 CGAAATGTGT
Statistics
Matches: 92, Mismatches: 4, Indels: 10
0.87 0.04 0.09
Matches are distributed among these distances:
47 34 0.37
48 1 0.01
49 21 0.23
50 1 0.01
51 35 0.38
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (48 bp):
ATGTGATGAATGTGAACTGTTATATATGTGGATAAGGCCGAATGGCAA
Found at i:99026417 original size:46 final size:46
Alignment explanation
Indices: 99026281--99026417 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
99026271 GAACATGTAT
* *
99026281 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
99026327 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * * *
99026373 ATATGTGGTAAAGCCAAATAGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
99026418 TGTATATATA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:99027582 original size:27 final size:27
Alignment explanation
Indices: 99027552--99027762 Score: 269
Period size: 27 Copynumber: 7.8 Consensus size: 27
99027542 ATTACCAAAG
* * *
99027552 TACCCTAGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
99027579 TACCCTCGATTTACAAAATTACCGCTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
99027606 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* ** * *
99027633 TACCTTTAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
99027660 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
99027687 TACCCTCAATTTACAGAATTACCGTCT
1 TACCCTCGATTTACAAAATTACCGTTT
*
99027714 TACCTTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
99027741 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
99027763 TAAAATACTA
Statistics
Matches: 161, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 161 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:99027799 original size:54 final size:54
Alignment explanation
Indices: 99027723--99027853 Score: 145
Period size: 54 Copynumber: 2.4 Consensus size: 54
99027713 TTACCTTCGA
**** ** * * *
99027723 TTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACTATTGG
1 TTTACAAAATTACCAAAATACCCTCGATCAACAAAATTACCAAAATACCACTGG
* *
99027777 TTTACAAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACCAAAATACCCTCGATCAACAAAATTACCAAAATACCACTGG
**
99027831 TTTGTAAAATTACCAAAATACCC
1 TTTACAAAATTACCAAAATACCC
99027854 CTAATTTGTG
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.41, C:0.22, G:0.06, T:0.31
Consensus pattern (54 bp):
TTTACAAAATTACCAAAATACCCTCGATCAACAAAATTACCAAAATACCACTGG
Found at i:99027861 original size:27 final size:27
Alignment explanation
Indices: 99027782--99027880 Score: 119
Period size: 27 Copynumber: 3.7 Consensus size: 27
99027772 ATTGGTTTAC
***
99027782 AAAATTACCAAAATA-CCCTCGATCAAT
1 AAAATTACCAAAATACCCCT-GATTTGT
*
99027809 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
99027836 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
99027863 GAAATTACCGAAATACCC
1 AAAATTACCAAAATACCC
99027881 TTGTAGGGTA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 59 0.94
28 4 0.06
ACGTcount: A:0.43, C:0.24, G:0.07, T:0.25
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:99027895 original size:27 final size:27
Alignment explanation
Indices: 99027865--99028006 Score: 212
Period size: 27 Copynumber: 5.3 Consensus size: 27
99027855 TAATTTGTGA
99027865 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
99027892 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
99027919 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
99027946 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
99027973 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
99028000 AATTACC
1 AATTACC
99028007 AATTTGCCCA
Statistics
Matches: 102, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:99027896 original size:81 final size:81
Alignment explanation
Indices: 99027811--99028008 Score: 231
Period size: 81 Copynumber: 2.4 Consensus size: 81
99027801 CGATCAATAA
* ** **
99027811 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTAAT-TTGT-GAAATTACCG
1 AATTACCGAAATACCCCT-GTAGGGTAAAATTACCAAAATA-CCCTAATAGGGTAGAAA-TACCG
*
99027873 AAATACCCTTGTAGGGTAG
63 AAATACCCCTGTAGGGTAG
* * **
99027892 AATTACTGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAAAATTACCAAAATACCCTAATAGGGTAGAAATACCGAAA
99027957 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * *
99027973 AATTACCGAGATACCCTTGTGGGGTAAAATTACCAA
1 AATTACCGAAATACCCCTGTAGGGTAAAATTACCAA
99028009 TTTGCCCATA
Statistics
Matches: 99, Mismatches: 15, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
80 7 0.07
81 88 0.89
82 4 0.04
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (81 bp):
AATTACCGAAATACCCCTGTAGGGTAAAATTACCAAAATACCCTAATAGGGTAGAAATACCGAAA
TACCCCTGTAGGGTAG
Found at i:99028458 original size:6 final size:6
Alignment explanation
Indices: 99028447--99028492 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
99028437 TGATACTAAA
*
99028447 TCTGAT TCTGAT TCTG-T CACCTGAT TCTGAT TCTGAT TCTGAT TCT
1 TCTGAT TCTGAT TCTGAT --TCTGAT TCTGAT TCTGAT TCTGAT TCT
99028493 AGTTTTGATA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
5 1 0.03
6 30 0.86
7 3 0.09
8 1 0.03
ACGTcount: A:0.15, C:0.22, G:0.15, T:0.48
Consensus pattern (6 bp):
TCTGAT
Found at i:99028459 original size:31 final size:31
Alignment explanation
Indices: 99028418--99028492 Score: 105
Period size: 31 Copynumber: 2.4 Consensus size: 31
99028408 ATTCACATTT
* *
99028418 TGATTTTGATTCTGTTACCTGATACTAAATC
1 TGATTCTGATTCTGTCACCTGATACTAAATC
* * *
99028449 TGATTCTGATTCTGTCACCTGATTCTGATTC
1 TGATTCTGATTCTGTCACCTGATACTAAATC
99028480 TGATTCTGATTCT
1 TGATTCTGATTCT
99028493 AGTTTTGATA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.20, C:0.19, G:0.15, T:0.47
Consensus pattern (31 bp):
TGATTCTGATTCTGTCACCTGATACTAAATC
Found at i:99028501 original size:18 final size:18
Alignment explanation
Indices: 99028447--99028492 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
99028437 TGATACTAAA
99028447 TCTGATTCTGATTCTG-T
1 TCTGATTCTGATTCTGAT
*
99028464 CACCTGATTCTGATTCTGAT
1 --TCTGATTCTGATTCTGAT
99028484 TCTGATTCT
1 TCTGATTCT
99028493 AGTTTTGATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 8 0.33
19 15 0.62
20 1 0.04
ACGTcount: A:0.15, C:0.22, G:0.15, T:0.48
Consensus pattern (18 bp):
TCTGATTCTGATTCTGAT
Found at i:99041449 original size:27 final size:26
Alignment explanation
Indices: 99041419--99041480 Score: 97
Period size: 28 Copynumber: 2.3 Consensus size: 26
99041409 TTTAAAACCC
99041419 TAGGGGTATATCGGTAATTTTGCTCTT
1 TAGGGGTATATCGGTAATTTTGCTC-T
*
99041446 TAGGGGTAATTTCGGTAATTTTGCTCT
1 TAGGGGT-ATATCGGTAATTTTGCTCT
99041473 TAGGGGTA
1 TAGGGGTA
99041481 ATTTCGTGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 1 0.03
27 15 0.45
28 17 0.52
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (26 bp):
TAGGGGTATATCGGTAATTTTGCTCT
Found at i:99041483 original size:27 final size:28
Alignment explanation
Indices: 99041419--99041486 Score: 113
Period size: 27 Copynumber: 2.5 Consensus size: 28
99041409 TTTAAAACCC
*
99041419 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
99041446 TAGGGGTAATTTCGGTAATTTTGCTC-T
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
99041473 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
99041487 TGATCTACGC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:99043257 original size:12 final size:12
Alignment explanation
Indices: 99043242--99043266 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
99043232 ACAGTAAATA
99043242 ATAAAAATTTTC
1 ATAAAAATTTTC
99043254 ATAAAAATTTTC
1 ATAAAAATTTTC
99043266 A
1 A
99043267 AACATACATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (12 bp):
ATAAAAATTTTC
Found at i:99043317 original size:19 final size:18
Alignment explanation
Indices: 99043280--99043323 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
99043270 ATACATACAG
99043280 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
99043297 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
99043316 TACTAATT
1 TAATAATT
99043324 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:99047159 original size:9 final size:9
Alignment explanation
Indices: 99047141--99047176 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
99047131 ACTTGGGTTG
*
99047141 CAAATTGGC
1 CAAATGGGC
99047150 CAAATGGGC
1 CAAATGGGC
99047159 CAAATGGGC
1 CAAATGGGC
*
99047168 CTAATGGGC
1 CAAATGGGC
99047177 TGTTGGGCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.31, C:0.22, G:0.31, T:0.17
Consensus pattern (9 bp):
CAAATGGGC
Found at i:99047300 original size:24 final size:24
Alignment explanation
Indices: 99047268--99047315 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
99047258 TTGGGCCTGA
99047268 TGGGCCATATGAATATGAATTGGG
1 TGGGCCATATGAATATGAATTGGG
*
99047292 TGGGCCATATGAATGTGAATTGGG
1 TGGGCCATATGAATATGAATTGGG
99047316 CCTGATAGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.08, G:0.35, T:0.29
Consensus pattern (24 bp):
TGGGCCATATGAATATGAATTGGG
Found at i:99050812 original size:24 final size:24
Alignment explanation
Indices: 99050785--99050844 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
99050775 TTATCCCCAC
* *
99050785 ATGGTGTGTAGGGTTGGTATGGAG
1 ATGGTGTGTAGGGCTGGTACGGAG
99050809 ATGGTGTGTAGGGCTGGTACGGAG
1 ATGGTGTGTAGGGCTGGTACGGAG
99050833 ATGGTGTGTAGG
1 ATGGTGTGTAGG
99050845 ATCCTTTGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.17, C:0.03, G:0.50, T:0.30
Consensus pattern (24 bp):
ATGGTGTGTAGGGCTGGTACGGAG
Found at i:99050907 original size:34 final size:33
Alignment explanation
Indices: 99050864--99050958 Score: 100
Period size: 34 Copynumber: 2.8 Consensus size: 33
99050854 TTGCATACTG
*
99050864 TACTGAAATGGGCTAAGGCCCAAACTACCTCTGT
1 TACTGAAATGGGCTAAGGCCCAAACTACAT-TGT
** * *
99050898 TACTGAAATGGGCTCTGGCCCAGACTGATATTGT
1 TACTGAAATGGGCTAAGGCCCAAACT-ACATTGT
* * *
99050932 TAATGAAAAGGGCTAAGGCCCTAACTA
1 TACTGAAATGGGCTAAGGCCCAAACTA
99050959 GAACTAACGG
Statistics
Matches: 49, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
33 1 0.02
34 46 0.94
35 2 0.04
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (33 bp):
TACTGAAATGGGCTAAGGCCCAAACTACATTGT
Found at i:99059556 original size:40 final size:40
Alignment explanation
Indices: 99059448--99059617 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
99059438 CGGGATTTAA
* * * * *
99059448 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
99059488 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99059528 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99059568 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99059608 CCGGATATAT
1 CCGGATATAT
99059618 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:99067652 original size:40 final size:40
Alignment explanation
Indices: 99067544--99067713 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
99067534 CGGGATTTAA
* * * * *
99067544 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
99067584 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99067624 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99067664 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99067704 CCGGATATAT
1 CCGGATATAT
99067714 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:99070158 original size:34 final size:34
Alignment explanation
Indices: 99070086--99070172 Score: 88
Period size: 34 Copynumber: 2.5 Consensus size: 34
99070076 CATACTGTAC
* * *
99070086 TGAAATGGGCTAAGGCCCAAACTGCCTCTGTTAC
1 TGAAATGGGCTAAGGCCCAAACTGCATCTATTAA
*
99070120 TGAAATGGGCTCAA-GCCCAGACTG-ATGCTATTAA
1 TGAAATGGGCT-AAGGCCCAAACTGCAT-CTATTAA
*
99070154 TGAAAAAGGGCTAAGGCCC
1 TG-AAATGGGCTAAGGCCC
99070173 TAATTGGAAC
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
33 1 0.02
34 29 0.66
35 14 0.32
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.21
Consensus pattern (34 bp):
TGAAATGGGCTAAGGCCCAAACTGCATCTATTAA
Found at i:99072522 original size:43 final size:43
Alignment explanation
Indices: 99072335--99072524 Score: 199
Period size: 43 Copynumber: 4.4 Consensus size: 43
99072325 GATCACCAAG
* *
99072335 ATGAGATTACATGTAAGACCATGTCTAGGACATTGGCATTG-T
1 ATGAGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGAT
* *
99072377 ATTGTGATTATGTGTAAGACCATGTCTAGGACATTGGCATC-ATT
1 A-TGAGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGA-T
* *
99072421 AT-ACGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
1 ATGA-GATTACGTGTAAGACCATGTCTAGGACATTGGCATCGAT
* * * * *
99072464 AATCA-ATTACGTGTAAGACCCTGGCTGGGACAGTGGCATCGAT
1 -ATGAGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGAT
* *
99072507 ATGAGATAACATGTAAGA
1 ATGAGATTACGTGTAAGA
99072525 TCATATCTGT
Statistics
Matches: 125, Mismatches: 15, Indels: 15
0.81 0.10 0.10
Matches are distributed among these distances:
42 4 0.03
43 116 0.93
44 4 0.03
45 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (43 bp):
ATGAGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGAT
Found at i:99076832 original size:15 final size:15
Alignment explanation
Indices: 99076812--99076844 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
99076802 TCTATTTCAA
99076812 AAAAGAGAGAGAGAG
1 AAAAGAGAGAGAGAG
99076827 AAAAGAGAGAGAGAG
1 AAAAGAGAGAGAGAG
99076842 AAA
1 AAA
99076845 TCTATTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (15 bp):
AAAAGAGAGAGAGAG
Found at i:99076835 original size:17 final size:17
Alignment explanation
Indices: 99076810--99076842 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
99076800 TCTCTATTTC
99076810 AAAAAAGAGAGAGAGAG
1 AAAAAAGAGAGAGAGAG
*
99076827 AAAAGAGAGAGAGAGA
1 AAAAAAGAGAGAGAGA
99076843 AATCTATTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (17 bp):
AAAAAAGAGAGAGAGAG
Found at i:99082693 original size:43 final size:44
Alignment explanation
Indices: 99082645--99082848 Score: 165
Period size: 43 Copynumber: 4.8 Consensus size: 44
99082635 TGAGATTACA
99082645 TGTAAGACCATGTCTGGGACATTGGCATTGTATTATGACTATC-
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATTATGACTATCG
** * *
99082688 TGTAAGACCATGTCTGGGACATTCACA-T-CATTAT-ACGATTACG
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATTATGACTA-T-CG
* * * *
99082731 TGTAAGACCATGTCTGGGACATCGGCATCGT-TAATCGATTA-CG
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATTAT-GACTATCG
* * * * * *
99082774 TGTAAGACCCTGTCTGGGACAGTGGCATCG-ATATGTGA-TAACA
1 TGTAAGACCATGTCTGGGACATTGGCATTGTAT-TATGACTATCG
* *
99082817 TGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 TGTAAGACCATGTCTGGGACATTGGCATTGTAT
99082849 GAGCTTATGT
Statistics
Matches: 128, Mismatches: 22, Indels: 22
0.74 0.13 0.13
Matches are distributed among these distances:
40 3 0.02
41 6 0.05
42 11 0.09
43 102 0.80
44 4 0.03
46 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACATTGGCATTGTATTATGACTATCG
Found at i:99082821 original size:86 final size:85
Alignment explanation
Indices: 99082627--99082848 Score: 236
Period size: 86 Copynumber: 2.6 Consensus size: 85
99082617 ACATTAGGAT
* * *
99082627 CATCGAGATGAGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTATGACTATCTGTA
1 CATCGATATGAGATTACATGTAAGACCATGTCTGGGACA-TGGCATCGTATAATGACTATCTGTA
*
99082692 AGACCATGTCTGGGACATTCA
65 AGACCATGTCTGGGACAGTCA
* *
99082713 CATC-ATTAT-ACGATTACGTGTAAGACCATGTCTGGGACATCGGCATCGT-TAATCGATTA-CG
1 CATCGA-TATGA-GATTACATGTAAGACCATGTCTGGGACAT-GGCATCGTATAAT-GACTATC-
* **
99082774 TGTAAGACCCTGTCTGGGACAGTGG
61 TGTAAGACCATGTCTGGGACAGTCA
* * * * *
99082799 CATCGATATGTGATAACATGTAAGACCATATCTGGGATATGGCATTGTAT
1 CATCGATATGAGATTACATGTAAGACCATGTCTGGGACATGGCATCGTAT
99082849 GAGCTTATGT
Statistics
Matches: 113, Mismatches: 15, Indels: 16
0.78 0.10 0.11
Matches are distributed among these distances:
85 14 0.12
86 98 0.87
87 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (85 bp):
CATCGATATGAGATTACATGTAAGACCATGTCTGGGACATGGCATCGTATAATGACTATCTGTAA
GACCATGTCTGGGACAGTCA
Found at i:99083911 original size:32 final size:32
Alignment explanation
Indices: 99083865--99083932 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
99083855 ACAGCCTAGA
* * *
99083865 CACACGGGCATGTCTACTGGCCGTGTCTGTGG
1 CACACAGGCATGTCTACTAGCCCTGTCTGTGG
* *
99083897 CACACAGGCGTGTCTACTAGCCCTGTGTGTGG
1 CACACAGGCATGTCTACTAGCCCTGTCTGTGG
99083929 CACA
1 CACA
99083933 TGGGCTAGCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.16, C:0.29, G:0.31, T:0.24
Consensus pattern (32 bp):
CACACAGGCATGTCTACTAGCCCTGTCTGTGG
Found at i:99088205 original size:18 final size:18
Alignment explanation
Indices: 99088182--99088217 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
99088172 AGAATAATTT
99088182 TGTAAATGACACATTGGA
1 TGTAAATGACACATTGGA
99088200 TGTAAATGACACATTGGA
1 TGTAAATGACACATTGGA
99088218 GAACTCTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.28
Consensus pattern (18 bp):
TGTAAATGACACATTGGA
Found at i:99090521 original size:46 final size:46
Alignment explanation
Indices: 99090468--99090637 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
99090458 GGCATCTGAA
99090468 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTGTCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTGTCCGAG
* * ** *
99090514 CTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACT--G--TCCGAG
*
99090561 CTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC-G-CCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-ACTGTCC-GAG
* *
99090607 CTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
99090638 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
43 7 0.07
45 5 0.05
46 53 0.52
47 27 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.31
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTGTCCGAG
Found at i:99090617 original size:93 final size:93
Alignment explanation
Indices: 99090458--99090630 Score: 287
Period size: 93 Copynumber: 1.9 Consensus size: 93
99090448 AGGATATTTG
* *
99090458 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTGTCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTGTCCGAGCTCATTGAG
99090523 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
99090551 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAC-G-CCTGAGCTCATTG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-ACTGTCC-GAGCTCATTG
99090614 AGTTGAGTCCGAGTTCG
64 AGTTGAGTCCGAGTTCG
99090631 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
92 2 0.03
93 71 0.95
94 2 0.03
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGACTGTCCGAGCTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:99093778 original size:40 final size:40
Alignment explanation
Indices: 99093634--99093878 Score: 340
Period size: 40 Copynumber: 6.2 Consensus size: 40
99093624 CGGGATTTAA
* * * * *
99093634 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
99093674 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99093714 CCGG--ATAT--A-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99093749 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99093789 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99093829 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99093869 CCGGATATAT
1 CCGGATATAT
99093879 TTCCAATGTT
Statistics
Matches: 185, Mismatches: 14, Indels: 12
0.88 0.07 0.06
Matches are distributed among these distances:
35 27 0.15
36 1 0.01
37 5 0.03
38 1 0.01
39 1 0.01
40 150 0.81
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:99101909 original size:40 final size:40
Alignment explanation
Indices: 99101801--99102010 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
99101791 CGGGATTTAA
* * * * *
99101801 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
99101841 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99101881 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99101921 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99101961 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
99102001 CCGGATATAT
1 CCGGATATAT
99102011 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:99105953 original size:5 final size:6
Alignment explanation
Indices: 99105942--99105975 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
99105932 ATGATGATGA
*
99105942 AAAAAG -AAAAG AAAAAG AAAAAG AAAAAC AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
99105976 AAAGCTCTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.85, C:0.03, G:0.12, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:99107292 original size:40 final size:40
Alignment explanation
Indices: 99107233--99107489 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
99107223 TGGATGATAA
* * *
99107233 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
99107273 CCGGGCTAAGTCCCAAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
99107313 CCGGGCTAAGTCCCGAAAGCATTT-TGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
99107352 CCGGGCAAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
99107392 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * ***
99107432 CTGGGCTATGTCCCGAAGGCATTCAAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
99107472 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
99107490 TACTTGGCTT
Statistics
Matches: 193, Mismatches: 21, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 52 0.27
40 141 0.73
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:99107375 original size:79 final size:79
Alignment explanation
Indices: 99107233--99107489 Score: 324
Period size: 79 Copynumber: 3.2 Consensus size: 79
99107223 TGGATGATAA
* *
99107233 CCGGGCTAAGTCCCGAAGGCA-TTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCAAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTTGCG--AGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATT
*
99107296 TGTGTGAGTTACTATAT
63 TGTGCGAGTTACTATAT
* *
99107313 CCGGGCTAAGTCCCGAAAGCATTTTGCGAGTTACTATATCCGGGCAAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
99107378 GCGAGTTACTATAT
66 GCGAGTTACTATAT
* * * **
99107392 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCTGGGCTATGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATT-TTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
99107457 AGCGAG-TAGCTATAT
65 TGCGAGTTA-CTATAT
* *
99107472 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
99107490 TACTTGGCTT
Statistics
Matches: 158, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 83 0.53
80 68 0.43
81 6 0.04
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTATAT
Found at i:99107445 original size:119 final size:120
Alignment explanation
Indices: 99107233--99107489 Score: 342
Period size: 119 Copynumber: 2.2 Consensus size: 120
99107223 TGGATGATAA
* * *
99107233 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCAAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCAAAGGCATTGG
* **
99107298 TGTGAGTTACTATATCCGGGCTAAGTCCCGAAAGCATT-TTGCGAGTTA-CTATAT
66 TGCGAGTTACTATATCCGGGCTAAGTCCCGAAAGCATTCAAGCGAG-TAGCTATAT
* * *
99107352 CCGGGCAAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTG
1 CCGGGCAAAGTCCCGAAGGCATTTGCGCGAGTGACTAGT-TCCGGGCTAAGTCCCAAAGGCATTG
* * *
99107416 GTGCGAGTTACTATATCTGGGCTATGTCCCGAAGGCATTCAAGCGAGTAGCTATAT
65 GTGCGAGTTACTATATCCGGGCTAAGTCCCGAAAGCATTCAAGCGAGTAGCTATAT
**
99107472 CCGGTTAAA-TCCCGAAGG
1 CCGGGCAAAGTCCCGAAGG
99107490 TACTTGGCTT
Statistics
Matches: 121, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
118 1 0.01
119 102 0.84
120 18 0.15
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (120 bp):
CCGGGCAAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCAAAGGCATTGG
TGCGAGTTACTATATCCGGGCTAAGTCCCGAAAGCATTCAAGCGAGTAGCTATAT
Found at i:99114885 original size:40 final size:40
Alignment explanation
Indices: 99114805--99114937 Score: 171
Period size: 40 Copynumber: 3.4 Consensus size: 40
99114795 GCCTGCGAAC
* *
99114805 TTTAAGCCCGGATAT--AGTACCAGCACTAAGCCTGTGGGA
1 TTTAA-CCCGGATATACATTACCAGCACAAAGCCTGTGGGA
* * **
99114844 TTTAACCCGGATATACATTACCAGCACGAAGCTTGCAGGA
1 TTTAACCCGGATATACATTACCAGCACAAAGCCTGTGGGA
*
99114884 TTTAACTCGGATATACATTACCAGCACAAAGCCTGTGGGA
1 TTTAACCCGGATATACATTACCAGCACAAAGCCTGTGGGA
*
99114924 TTTAACCCAGATAT
1 TTTAACCCGGATAT
99114938 TTAATATATC
Statistics
Matches: 80, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
38 9 0.11
39 5 0.06
40 66 0.82
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (40 bp):
TTTAACCCGGATATACATTACCAGCACAAAGCCTGTGGGA
Found at i:99117122 original size:24 final size:24
Alignment explanation
Indices: 99117068--99117255 Score: 269
Period size: 24 Copynumber: 8.0 Consensus size: 24
99117058 GCTTTATCAT
*
99117068 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
99117093 ACAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
99117117 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
99117140 ATAA-TGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
99117163 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
99117186 ATAACTGGGGCATAGGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
99117210 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
99117233 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
99117256 GCACTTCCTC
Statistics
Matches: 147, Mismatches: 11, Indels: 11
0.87 0.07 0.07
Matches are distributed among these distances:
22 14 0.10
23 58 0.39
24 64 0.44
25 11 0.07
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:99117143 original size:23 final size:23
Alignment explanation
Indices: 99117089--99117254 Score: 253
Period size: 23 Copynumber: 7.1 Consensus size: 23
99117079 CCTAGCCTCT
* *
99117089 TTTAACAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
99117112 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
99117136 TTTAATAA-TGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
99117158 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
99117182 TTTAATAACTGGGGCATAGGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
99117205 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
99117229 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
99117252 TTT
1 TTT
99117255 TGCACTTCCT
Statistics
Matches: 131, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
22 14 0.11
23 61 0.47
24 56 0.43
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:99117213 original size:47 final size:47
Alignment explanation
Indices: 99117089--99117256 Score: 293
Period size: 47 Copynumber: 3.6 Consensus size: 47
99117079 CCTAGCCTCT
* * *
99117089 TTTAACAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
99117136 TTTAATAA-TGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
99117182 TTTAATAACTGGGGCATAGGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
99117229 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
99117257 CACTTCCTCC
Statistics
Matches: 115, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
46 44 0.38
47 71 0.62
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:99117327 original size:9 final size:9
Alignment explanation
Indices: 99117313--99117369 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
99117303 ATCTCATGTG
99117313 CATATCATA
1 CATATCATA
*
99117322 CATATCATGTG
1 CATATCA--TA
99117333 CATATCATA
1 CATATCATA
*
99117342 CATATCATGTG
1 CATATCA--TA
99117353 CATATCATA
1 CATATCATA
99117362 CATATCAT
1 CATATCAT
99117370 GTTTATCAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 24 0.60
11 16 0.40
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:99117329 original size:20 final size:20
Alignment explanation
Indices: 99117301--99117371 Score: 133
Period size: 20 Copynumber: 3.5 Consensus size: 20
99117291 GCATTTATGA
*
99117301 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
99117321 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
99117341 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
99117361 ACATATCATGT
1 ACATATCATGT
99117372 TTATCAAAAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:99117336 original size:11 final size:11
Alignment explanation
Indices: 99117306--99117360 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
99117296 TATGAACATC
99117306 TCATGTGCATA
1 TCATGTGCATA
*
99117317 TCA--TACATA
1 TCATGTGCATA
99117326 TCATGTGCATA
1 TCATGTGCATA
*
99117337 TCA--TACATA
1 TCATGTGCATA
99117346 TCATGTGCATA
1 TCATGTGCATA
99117357 TCAT
1 TCAT
99117361 ACATATCATG
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 16 0.44
11 20 0.56
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:99117436 original size:25 final size:25
Alignment explanation
Indices: 99117408--99117455 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
99117398 ATATATAAAC
* * *
99117408 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
99117433 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
99117456 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:99125264 original size:24 final size:24
Alignment explanation
Indices: 99125213--99125400 Score: 296
Period size: 23 Copynumber: 8.0 Consensus size: 24
99125203 GCTTTATCAT
*
99125213 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
99125238 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
99125262 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
99125285 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
99125309 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
99125332 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
99125355 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
99125378 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
99125401 GCACTTCCTC
Statistics
Matches: 153, Mismatches: 5, Indels: 11
0.91 0.03 0.07
Matches are distributed among these distances:
22 3 0.02
23 83 0.54
24 55 0.36
25 12 0.08
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:99125288 original size:47 final size:46
Alignment explanation
Indices: 99125212--99125400 Score: 308
Period size: 47 Copynumber: 4.0 Consensus size: 46
99125202 TGCTTTATCA
* *
99125212 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTT
1 TATAACTGG-GGCATAAGCC-C-TTTAATAACTGGGGCATAAGCCCTTT
99125260 TAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
99125307 TGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
99125354 TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
99125400 T
1 T
99125401 GCACTTCCTC
Statistics
Matches: 136, Mismatches: 3, Indels: 6
0.94 0.02 0.04
Matches are distributed among these distances:
46 46 0.34
47 72 0.53
48 6 0.04
49 12 0.09
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (46 bp):
TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
Found at i:99125470 original size:9 final size:9
Alignment explanation
Indices: 99125456--99125512 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
99125446 ATCTCATGTG
99125456 CATATCATA
1 CATATCATA
*
99125465 CATATCATGTG
1 CATATCA--TA
99125476 CATATCATA
1 CATATCATA
* *
99125485 CATGTCATGTG
1 CATATCA--TA
99125496 CATATCATA
1 CATATCATA
99125505 CATATCAT
1 CATATCAT
99125513 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:99125472 original size:20 final size:20
Alignment explanation
Indices: 99125444--99125514 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
99125434 GCATTTATGA
*
99125444 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
99125464 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
99125484 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
99125504 ACATATCATGT
1 ACATATCATGT
99125515 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:99125479 original size:11 final size:11
Alignment explanation
Indices: 99125449--99125503 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
99125439 TATGAACATC
99125449 TCATGTGCATA
1 TCATGTGCATA
*
99125460 TCA--TACATA
1 TCATGTGCATA
99125469 TCATGTGCATA
1 TCATGTGCATA
* *
99125480 TCA--TACATG
1 TCATGTGCATA
99125489 TCATGTGCATA
1 TCATGTGCATA
99125500 TCAT
1 TCAT
99125504 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:99125579 original size:25 final size:25
Alignment explanation
Indices: 99125551--99125598 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
99125541 ATATATAAAC
* * *
99125551 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
99125576 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
99125599 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:99129404 original size:40 final size:38
Alignment explanation
Indices: 99129326--99129431 Score: 124
Period size: 39 Copynumber: 2.7 Consensus size: 38
99129316 ATGATGTCCG
* *
99129326 GGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGCTAAGTCCGAAGGCATTTGTGC-GAGTGACCAAATCC
**
99129364 GGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAATCC
1 GG-CTAAG-TCCGAAGGCATTTGTGCGAGTGACCAAATCC
*
99129404 GGTTAAGTCCCGAAGGCATTTGTGCGAG
1 GGCTAAGT-CCGAAGGCATTTGTGCGAG
99129432 CTATTATAAC
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
38 3 0.05
39 28 0.47
40 21 0.36
41 7 0.12
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (38 bp):
GGCTAAGTCCGAAGGCATTTGTGCGAGTGACCAAATCC
Found at i:99136018 original size:40 final size:39
Alignment explanation
Indices: 99135981--99136161 Score: 151
Period size: 41 Copynumber: 4.7 Consensus size: 39
99135971 GCTACTCGTT
*
99135981 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGAC-TAACCCGGATT-TAGTAACTCGCA
99136021 CAAATGCCTTCGGGACTAACCCGGATTTAGTAACT--CA
1 CAAATGCCTTCGGGACTAACCCGGATTTAGTAACTCGCA
* * *
99136058 CACATGCCTTC-GG-CTTAGCCGGA-TTAGTAACTCGCA
1 CAAATGCCTTCGGGACTAACCCGGATTTAGTAACTCGCA
* ** * * *
99136094 CAAAGGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-C-TAACCCGGATTTAGTAAC-TCGCA
* *
99136135 CAAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAATGCCTTCGGGAC-TAACCCGGAT
99136162 ATCATTCGAA
Statistics
Matches: 118, Mismatches: 14, Indels: 17
0.79 0.09 0.11
Matches are distributed among these distances:
34 9 0.08
35 8 0.07
36 15 0.13
37 12 0.10
38 1 0.01
39 21 0.18
40 24 0.20
41 25 0.21
42 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTAACCCGGATTTAGTAACTCGCA
Found at i:99136090 original size:34 final size:37
Alignment explanation
Indices: 99135984--99136095 Score: 115
Period size: 39 Copynumber: 3.0 Consensus size: 37
99135974 ACTCGTTCAA
* *
99135984 ATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAA
1 ATGCCTTCGGGAC-TAACCCGGATT-TAGTAACT--CACAC
99136024 ATGCCTTCGGGACTAACCCGGATTTAGTAACTCACAC
1 ATGCCTTCGGGACTAACCCGGATTTAGTAACTCACAC
* * *
99136061 ATGCCTTC-GG-CTTAGCCGGA-TTAGTAACTCGCAC
1 ATGCCTTCGGGACTAACCCGGATTTAGTAACTCACAC
99136095 A
1 A
99136096 AAGGCCTTCG
Statistics
Matches: 66, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
34 14 0.21
35 8 0.12
36 2 0.03
37 12 0.18
39 15 0.23
40 15 0.23
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (37 bp):
ATGCCTTCGGGACTAACCCGGATTTAGTAACTCACAC
Found at i:99143656 original size:40 final size:40
Alignment explanation
Indices: 99143600--99143807 Score: 145
Period size: 40 Copynumber: 5.2 Consensus size: 40
99143590 CGGAGTTTAA
* ** *
99143600 CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAAC
* *
99143640 CCGGTTATAGCAACTCGCACAAATGCCTTCGGGACCTAAC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAAC
* * * ** * *
99143680 CCGGATTTAGTAACTCACACCCATGCCTTCGGG-CTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAAC
* * * * **
99143719 CCGGGAT-TAGTAACTCGTACAAAGGCCTTC-GGATCTTAGT
1 CC-GGATATAGCAACTCGCACAAATGCCTTCGGGA-CATAAC
* * * *
99143759 CCGGATATAGTC-ACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAG-CAAC-TCGCACAAATGCCTTCGGGACATAAC
99143800 CCGGATAT
1 CCGGATAT
99143808 CATTCGAATA
Statistics
Matches: 136, Mismatches: 25, Indels: 13
0.78 0.14 0.07
Matches are distributed among these distances:
38 2 0.01
39 28 0.21
40 77 0.57
41 26 0.19
42 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAAC
Found at i:99143733 original size:39 final size:39
Alignment explanation
Indices: 99143619--99143805 Score: 153
Period size: 40 Copynumber: 4.7 Consensus size: 39
99143609 GCTACTCGTT
* * *
99143619 CAAATGCCTTCGGGACATAGCCCGGTTATAGCAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGAT-TAGTAACTCACA
* *
99143659 CAAATGCCTTCGGGACCTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAGCCCGGA-TTAGTAACTCACA
** * **
99143699 CCCATGCCTTCGGG-CTTAGCCCGGGATTAGTAACTCGTA
1 CAAATGCCTTCGGGACATAGCCC-GGATTAGTAACTCACA
* * * * *
99143738 CAAAGGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAGCCCGGAT-TAGTAACTCA-CA
* *
99143779 CAAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAATGCCTTCGGGACATAGCCCGGAT
99143806 ATCATTCGAA
Statistics
Matches: 119, Mismatches: 21, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
38 2 0.02
39 29 0.24
40 62 0.52
41 23 0.19
42 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACATAGCCCGGATTAGTAACTCACA
Found at i:99143763 original size:79 final size:82
Alignment explanation
Indices: 99143619--99143807 Score: 201
Period size: 79 Copynumber: 2.4 Consensus size: 82
99143609 GCTACTCGTT
* * *
99143619 CAAATGCCTTCGGGACATAGCCC-GGTTATAGCAACTCGCACAAATGCCTTCGGGACCTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGGATATAGCAACTCGCACAAAGGCCTTCGGGACCTAACCCG
*
99143683 GATTTAGTAACTCA-CA
66 GATATAGTAACTCAGCA
** * * * **
99143699 CCCATGCCTTCGGG-CTTAGCCCGGGAT-TAGTAACTCGTACAAAGGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACTTAGCCCGGGATATAGCAACTCGCACAAAGGCCTTCGGGA-CCTAACCC
* *
99143761 GGATATAGTCACTTAGCA
65 GGATATAGTAACTCAGCA
*
99143779 CAAAAGCCTTCGGGACTTAGCCC-GGATAT
1 CAAATGCCTTCGGGACTTAGCCCGGGATAT
99143808 CATTCGAATA
Statistics
Matches: 88, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
78 3 0.03
79 44 0.50
80 32 0.36
81 9 0.10
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGGATATAGCAACTCGCACAAAGGCCTTCGGGACCTAACCCG
GATATAGTAACTCAGCA
Found at i:99148795 original size:37 final size:36
Alignment explanation
Indices: 99148663--99148795 Score: 90
Period size: 37 Copynumber: 3.6 Consensus size: 36
99148653 TACTCCCTGT
* *
99148663 TTTGGTGTGTTATCGGGTGGATGAGCTCTTATGAGCA
1 TTTGGCGTGTTATC-GGTGGATGAGTTCTTATGAGCA
* * * * * *
99148700 TTTGACGTGTTTTCAGTTGCACT-AGCTTTTTA-GAGGA
1 TTTGGCGTGTTATC-GGTGGA-TGAG-TTCTTATGAGCA
* * *
99148737 ATTGGCATGTTATCAGGTGGATGAGTTCTTATGAGTA
1 TTTGGCGTGTTATC-GGTGGATGAGTTCTTATGAGCA
*
99148774 TTTGGCGTGTTTTCGGATGGAT
1 TTTGGCGTGTTATCGG-TGGAT
99148796 TAATGTGCTC
Statistics
Matches: 71, Mismatches: 20, Indels: 10
0.70 0.20 0.10
Matches are distributed among these distances:
36 8 0.11
37 58 0.82
38 5 0.07
ACGTcount: A:0.18, C:0.11, G:0.31, T:0.41
Consensus pattern (36 bp):
TTTGGCGTGTTATCGGTGGATGAGTTCTTATGAGCA
Found at i:99150439 original size:42 final size:41
Alignment explanation
Indices: 99150393--99150528 Score: 146
Period size: 42 Copynumber: 3.2 Consensus size: 41
99150383 GTCCTAGACG
* *
99150393 TGGTCTTACATGGGATCTCACATTGATGCCATATCCCAGATA
1 TGGTCTTACACGAGATCTCA-ATTGATGCCATATCCCAGATA
* * * **
99150435 TGGTCTTATACGAGATCTCATTTCGATGCCATGTCCCAGACG
1 TGGTCTTACACGAGATCTCAATT-GATGCCATATCCCAGATA
* ** *
99150477 TGGTCTTACACGAAATCTCATATCAACGCCATATCCCAGATA
1 TGGTCTTACACGAGATCTCA-ATTGATGCCATATCCCAGATA
99150519 TGGTCTTACA
1 TGGTCTTACA
99150529 TGATAACACA
Statistics
Matches: 76, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
41 2 0.03
42 73 0.96
43 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (41 bp):
TGGTCTTACACGAGATCTCAATTGATGCCATATCCCAGATA
Found at i:99150546 original size:84 final size:84
Alignment explanation
Indices: 99150376--99150548 Score: 211
Period size: 84 Copynumber: 2.1 Consensus size: 84
99150366 TAAGATGCCA
* * ** ** *
99150376 ATGCCATGTCCTAGACGTGGTCTTACATGGGATCTCACATTGATGCCATATCCCAGATATGGTCT
1 ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCAACGCCATATCCCAGATATGGTCT
* * * **
99150441 TATACGAGATCTCATTTCG
66 TACACGAGAACACATACCG
*
99150460 ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCATATCAACGCCATATCCCAGATATGGTCT
1 ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCAACGCCATATCCCAGATATGGTCT
* *
99150525 TACATGATAACACATACCG
66 TACACGAGAACACATACCG
99150544 ATGCC
1 ATGCC
99150549 GATGCCATAT
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
84 74 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (84 bp):
ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCAACGCCATATCCCAGATATGGTCT
TACACGAGAACACATACCG
Found at i:99164988 original size:21 final size:21
Alignment explanation
Indices: 99164964--99165003 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
99164954 TGTCATAATC
99164964 TAAAAATATATTAAAAATTAA
1 TAAAAATATATTAAAAATTAA
* *
99164985 TAAAAATATTTTTAAAATT
1 TAAAAATATATTAAAAATT
99165004 TATTTTCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAAAATATATTAAAAATTAA
Found at i:99165229 original size:32 final size:31
Alignment explanation
Indices: 99165161--99165254 Score: 161
Period size: 31 Copynumber: 3.0 Consensus size: 31
99165151 TTTCATATCC
*
99165161 CTTTTTTTCGATAATTTCTTTCTTCTTCCTT
1 CTTTTTTTCGATAATTCCTTTCTTCTTCCTT
99165192 CTTTTTTTCGATAATTCCTTTCTTCTTCCTT
1 CTTTTTTTCGATAATTCCTTTCTTCTTCCTT
*
99165223 CTTTTTTTTCGATAATTCCTTTCTTCATCCTT
1 C-TTTTTTTCGATAATTCCTTTCTTCTTCCTT
99165255 ATTCCTCTTG
Statistics
Matches: 60, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
31 31 0.52
32 29 0.48
ACGTcount: A:0.11, C:0.24, G:0.03, T:0.62
Consensus pattern (31 bp):
CTTTTTTTCGATAATTCCTTTCTTCTTCCTT
Found at i:99165439 original size:32 final size:32
Alignment explanation
Indices: 99165403--99165463 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
99165393 GAAAAGAAAA
* *
99165403 ATTACAAAACTCATC-GATCTATTAAAAAACAC
1 ATTACAAAACACATCAG-TCCATTAAAAAACAC
*
99165435 ATTACAACACACATCAGTCCATTAAAAAA
1 ATTACAAAACACATCAGTCCATTAAAAAA
99165464 ATCAAGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
32 24 0.96
33 1 0.04
ACGTcount: A:0.51, C:0.23, G:0.03, T:0.23
Consensus pattern (32 bp):
ATTACAAAACACATCAGTCCATTAAAAAACAC
Found at i:99165506 original size:30 final size:32
Alignment explanation
Indices: 99165464--99165530 Score: 111
Period size: 30 Copynumber: 2.2 Consensus size: 32
99165454 CATTAAAAAA
*
99165464 ATCAAGAAAATTAACATCACAAAC-AAAATCC
1 ATCAAGAAAATTAACATAACAAACAAAAATCC
99165495 ATCAA-AAAATTAACATAACAAACAAAAATCC
1 ATCAAGAAAATTAACATAACAAACAAAAATCC
99165526 ATCAA
1 ATCAA
99165531 TCTATAAGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
30 17 0.50
31 17 0.50
ACGTcount: A:0.61, C:0.21, G:0.01, T:0.16
Consensus pattern (32 bp):
ATCAAGAAAATTAACATAACAAACAAAAATCC
Found at i:99183416 original size:49 final size:49
Alignment explanation
Indices: 99183356--99183613 Score: 475
Period size: 49 Copynumber: 5.3 Consensus size: 49
99183346 GTATGAGATA
99183356 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
99183405 TATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
99183454 TATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
99183503 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
99183552 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
99183599 TATAAATGTGATAAG
1 TATATATGTGATAAG
99183614 TCCCGAAGGG
Statistics
Matches: 204, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
47 17 0.08
49 187 0.92
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.31
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:99185378 original size:48 final size:50
Alignment explanation
Indices: 99185288--99185381 Score: 129
Period size: 48 Copynumber: 1.9 Consensus size: 50
99185278 GCTATCCGCT
***
99185288 TCGATATGTGTGATCCCATGTAAGACCATGTTTAAGACATGGCATTGGCA
1 TCGATATGTGTGATCCCATGTAAGACCATAACTAAGACATGGCATTGGCA
* *
99185338 TCGATATGTG-G-TCCCATGTAAGACCATAACTGAGATATGGCATT
1 TCGATATGTGTGATCCCATGTAAGACCATAACTAAGACATGGCATT
99185382 AGCAACCTAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
48 28 0.72
49 1 0.03
50 10 0.26
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (50 bp):
TCGATATGTGTGATCCCATGTAAGACCATAACTAAGACATGGCATTGGCA
Found at i:99187195 original size:46 final size:44
Alignment explanation
Indices: 99187142--99187347 Score: 166
Period size: 46 Copynumber: 4.5 Consensus size: 44
99187132 GTGAGCTAGA
*
99187142 GTAAGACATGTCTGGGACATGCATCGGCTAC-ATTATGACAGAGAGT
1 GTAAGACATGTCTGGGACATGCATCGGCT-CGA-GATGA-AGAGAGT
* * *
99187188 GTAAGACAATGTCTGGGACATGGCATCGGCATTGAGACG-AGAGCTAGA
1 GTAAGAC-ATGTCTGGGACAT-GCATCGGC-TCGAGATGAAGAG--AGT
* * * **
99187236 GTAAAACATGTCCGGGACATGCATCAGCGTCGAGATGTAAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGC-TCGAGATG-AAGAGAGT
* * **
99187282 ATAAGACATGTCTAGGACATGCATCGGCTACGAGATGAA-CTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCT-CGAGATGAAGAGAGT
99187326 GTAAGACCATGTCTGGGACATG
1 GTAAGA-CATGTCTGGGACATG
99187348 GCATTAGCAT
Statistics
Matches: 129, Mismatches: 21, Indels: 21
0.75 0.12 0.12
Matches are distributed among these distances:
44 9 0.07
45 17 0.13
46 56 0.43
47 25 0.19
48 20 0.16
49 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.21
Consensus pattern (44 bp):
GTAAGACATGTCTGGGACATGCATCGGCTCGAGATGAAGAGAGT
Found at i:99197310 original size:14 final size:14
Alignment explanation
Indices: 99197291--99197320 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
99197281 CATCCCTCAT
99197291 TCACAATTATTCTC
1 TCACAATTATTCTC
99197305 TCACAATTATTCTC
1 TCACAATTATTCTC
99197319 TC
1 TC
99197321 TTCTTTCACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (14 bp):
TCACAATTATTCTC
Found at i:99198234 original size:243 final size:242
Alignment explanation
Indices: 99197807--99198411 Score: 1165
Period size: 243 Copynumber: 2.5 Consensus size: 242
99197797 ACACATTACT
99197807 TAATCAGTGCATGTTTAATCATCTAAGGTAGCTGAGGGTTAAATTAGCAACGGTATCTGACGATA
1 TAATCAGTGCATGTTTAATCATCTAAGGTAGCTGAGGGTTAAATTAGCAACGGTATCTGACGATA
*
99197872 GAATTGCCTTGCATAACTTGCAAGATTATTGTGATTAAACTGTTTCAAGATAAGGATACTTTGTT
66 GAATTGCCTTGCATAACTTGCAAGATTATTGTGATTAAACTGTTTCAAGGTAAGGATACTTTGTT
99197937 ACCTCACATAGTCTTTTATGTGCTTATTAAATCGAGTTAATTGTTTGAATTGACATAGGAATATG
131 ACCTCACATAGTCTTTTATGTGCTTATTAAATCGAGTTAATTGTTTGAATTGACATAGGAATATG
99198002 TTTAAGAGATTATTTCAATTTAATAAGTATGTATGTGCTATAACATA
196 TTTAAGAGATTATTTCAATTTAATAAGTATGTATGTGCTATAACATA
*
99198049 TAATCAGTGCATGTTTAATCATCTAAGGTAGCTGAGGGTTAAATTAGCAACGGTATCTGACAATA
1 TAATCAGTGCATGTTTAATCATCTAAGGTAGCTGAGGGTTAAATTAGCAACGGTATCTGACGATA
99198114 GAATTGCCCTTGCATAACTTGCAAGATTATTGTGATTAAACTGTTTCAAGGTAAGGATACTTTGT
66 GAATTG-CCTTGCATAACTTGCAAGATTATTGTGATTAAACTGTTTCAAGGTAAGGATACTTTGT
*
99198179 TACCTTACATAGTCTTTTATGTGCTTATTAAATCGAGTTAATTGTTTGAATTGACATAGGAATAT
130 TACCTCACATAGTCTTTTATGTGCTTATTAAATCGAGTTAATTGTTTGAATTGACATAGGAATAT
99198244 GTTTAAGAGATTATTTCAATTTAATAAGTATGTATGTGCTATAACATA
195 GTTTAAGAGATTATTTCAATTTAATAAGTATGTATGTGCTATAACATA
*
99198292 TAATCAGTGCATGTTTAATCATTTAAGGTAGCTGAGGGTTAAATTAGCAACGGTATCTGACGATA
1 TAATCAGTGCATGTTTAATCATCTAAGGTAGCTGAGGGTTAAATTAGCAACGGTATCTGACGATA
99198357 GAATTGCCTTGCATAACTTGCAAGATTATTGTGATTAAACTGTTTCAAGGTAAGG
66 GAATTGCCTTGCATAACTTGCAAGATTATTGTGATTAAACTGTTTCAAGGTAAGG
99198412 TGTAACACCC
Statistics
Matches: 357, Mismatches: 5, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
242 119 0.33
243 238 0.67
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (242 bp):
TAATCAGTGCATGTTTAATCATCTAAGGTAGCTGAGGGTTAAATTAGCAACGGTATCTGACGATA
GAATTGCCTTGCATAACTTGCAAGATTATTGTGATTAAACTGTTTCAAGGTAAGGATACTTTGTT
ACCTCACATAGTCTTTTATGTGCTTATTAAATCGAGTTAATTGTTTGAATTGACATAGGAATATG
TTTAAGAGATTATTTCAATTTAATAAGTATGTATGTGCTATAACATA
Found at i:99199801 original size:49 final size:49
Alignment explanation
Indices: 99199736--99199973 Score: 314
Period size: 49 Copynumber: 4.8 Consensus size: 49
99199726 TAGCCAAAGC
* * * * *
99199736 TATCTGGTACGCATAGTAGCCTGCACATAGTACTGCACATGTGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
99199785 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
99199834 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * *
99199884 CATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* ** *
99199935 TTTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
99199974 TGCGACCTCA
Statistics
Matches: 167, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 89 0.53
50 42 0.25
51 35 0.21
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:99199921 original size:99 final size:100
Alignment explanation
Indices: 99199736--99199973 Score: 318
Period size: 99 Copynumber: 2.4 Consensus size: 100
99199726 TAGCCAAAGC
* * * * * ** *
99199736 TATCTGGTACGCATAGTAGCCTGCACATAGTACTGCACATGTGACCAATTATCCGGTACACATAG
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACATAG
99199801 TAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
66 TAGCCTGCACTTAGTACTACACACGTGATCACAAT
* *
99199834 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACATA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACATA
*
99199899 GTAGCCTGCACTTAGTACTACACACGTGATCACAGT
65 GTAGCCTGCACTTAGTACTACACACGTGATCACAAT
* ** *
99199935 TTTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
99199974 TGCGACCTCA
Statistics
Matches: 121, Mismatches: 16, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
98 40 0.33
99 43 0.36
100 1 0.01
101 37 0.31
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (100 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACATAG
TAGCCTGCACTTAGTACTACACACGTGATCACAAT
Found at i:99202252 original size:16 final size:17
Alignment explanation
Indices: 99202223--99202255 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
99202213 AGGAAAGAAT
*
99202223 AAAAAAAAGGGAAAAAG
1 AAAAAAAAGAGAAAAAG
99202240 AAAAAAAA-AGAAAAAG
1 AAAAAAAAGAGAAAAAG
99202256 TGATAACAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGAGAAAAAG
Found at i:99202253 original size:23 final size:23
Alignment explanation
Indices: 99202205--99202255 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
99202195 CTAGAACAGG
*
99202205 AAAGGGAAAGGAAAGAATAAAAA
1 AAAGGGAAAAGAAAGAATAAAAA
*
99202228 AAAGGGAAAAAGAAA-AAAAAAGAA
1 AAAGGG-AAAAGAAAGAATAAA-AA
99202252 AAAG
1 AAAG
99202256 TGATAACAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 11 0.46
24 13 0.54
ACGTcount: A:0.75, C:0.00, G:0.24, T:0.02
Consensus pattern (23 bp):
AAAGGGAAAAGAAAGAATAAAAA
Found at i:99202502 original size:8 final size:8
Alignment explanation
Indices: 99202484--99202513 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
99202474 TATAATACTT
99202484 TTTTAAATA
1 TTTT-AATA
99202493 TTTTAATA
1 TTTTAATA
99202501 TTTTAATA
1 TTTTAATA
99202509 TTTTA
1 TTTTA
99202514 TAATTGTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (8 bp):
TTTTAATA
Found at i:99204167 original size:10 final size:9
Alignment explanation
Indices: 99204153--99204218 Score: 51
Period size: 9 Copynumber: 7.0 Consensus size: 9
99204143 AAAGACTTTT
99204153 TTTTTATAA
1 TTTTTATAA
* *
99204162 TTTTTTTGTAT
1 --TTTTTATAA
99204173 TTTTTATAA
1 TTTTTATAA
*
99204182 TATTTATAA
1 TTTTTATAA
*
99204191 GTTTTATAA
1 TTTTTATAA
*
99204200 TCTTTATAA
1 TTTTTATAA
*
99204209 GTTTATATAA
1 -TTTTTATAA
99204219 ATATTTTTAA
Statistics
Matches: 43, Mismatches: 11, Indels: 3
0.75 0.19 0.05
Matches are distributed among these distances:
9 29 0.67
10 7 0.16
11 7 0.16
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:99204197 original size:18 final size:18
Alignment explanation
Indices: 99204174--99204224 Score: 75
Period size: 18 Copynumber: 2.7 Consensus size: 18
99204164 TTTTTGTATT
99204174 TTTTATAATATTTATAAG
1 TTTTATAATATTTATAAG
*
99204192 TTTTATAATCTTTATAAG
1 TTTTATAATATTTATAAG
99204210 TTTATATAAATATTT
1 TTT-TAT-AATATTT
99204225 TTAAAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 20 0.69
19 3 0.10
20 6 0.21
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (18 bp):
TTTTATAATATTTATAAG
Found at i:99204234 original size:14 final size:14
Alignment explanation
Indices: 99204217--99204245 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
99204207 AAGTTTATAT
99204217 AAATATTTTTAAAA
1 AAATATTTTTAAAA
99204231 AAATATTTTTAAAA
1 AAATATTTTTAAAA
99204245 A
1 A
99204246 TTTTAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATATTTTTAAAA
Found at i:99204861 original size:23 final size:21
Alignment explanation
Indices: 99204811--99204863 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 21
99204801 AGTATTCACT
*
99204811 TAATTATAAAAAAATATTTTTG
1 TAATT-TAAAAAAATAATTTTG
99204833 -ACATTTAAAATAATATAATTTTG
1 TA-ATTTAAAA-AA-ATAATTTTG
99204856 TAATTTAA
1 TAATTTAA
99204864 GCCATCGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 6 0.23
22 5 0.19
23 14 0.54
24 1 0.04
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (21 bp):
TAATTTAAAAAAATAATTTTG
Found at i:99205133 original size:10 final size:10
Alignment explanation
Indices: 99205074--99205143 Score: 56
Period size: 10 Copynumber: 7.0 Consensus size: 10
99205064 TAAAAGAAAC
99205074 ATATAAAAAT
1 ATATAAAAAT
* *
99205084 ACATAAATAT
1 ATATAAAAAT
* *
99205094 TTTTAAAAAAT
1 ATAT-AAAAAT
99205105 ATAATAATAAAT
1 AT-ATAA-AAAT
99205117 -T-TAAAAAT
1 ATATAAAAAT
99205125 ATATAAAAAT
1 ATATAAAAAT
99205135 ATA-AAAAAT
1 ATATAAAAAT
99205144 TGACAAGAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
8 4 0.09
9 10 0.21
10 19 0.40
11 9 0.19
12 5 0.11
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (10 bp):
ATATAAAAAT
Found at i:99216654 original size:15 final size:16
Alignment explanation
Indices: 99216634--99216663 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
99216624 AACTGTTTTA
99216634 TTAC-AAATTTCACTC
1 TTACAAAATTTCACTC
99216649 TTACAAAATTTCACT
1 TTACAAAATTTCACT
99216664 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.37, C:0.23, G:0.00, T:0.40
Consensus pattern (16 bp):
TTACAAAATTTCACTC
Found at i:99217090 original size:50 final size:50
Alignment explanation
Indices: 99216861--99217156 Score: 267
Period size: 50 Copynumber: 5.9 Consensus size: 50
99216851 GTAACCGAAG
* * * *
99216861 CTATTTGGTACCCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * * *
99216910 CAATCTAGTACATGTAGTAGCCTGCACTTAGTACTACTCATGTGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * * * *
99216960 CCATCTGATACACGTAGTAGCCTGCAGTTAGTACTACACACGTGA-TTGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA
* * * *** * *
99217010 GTTGTCGGGTACGTATAATAGCCTGCACTTAGTACTACACATGCGACCTAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* *
99217061 CTATCTGGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAAAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCT--AA
* * * *
99217113 CCATCT--TAAACGCATAGTAGCCTGCACATGGTACTACACATGTG
1 CTATCTGGTACACG--TAGTAGCCTGCACTTAGTACTACACATGTG
99217157 TTCTCACAAT
Statistics
Matches: 194, Mismatches: 45, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
49 40 0.21
50 85 0.44
51 35 0.18
52 34 0.18
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
Found at i:99222271 original size:39 final size:39
Alignment explanation
Indices: 99222157--99222327 Score: 202
Period size: 39 Copynumber: 4.3 Consensus size: 39
99222147 ACGACTAGCT
* *
99222157 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAA-CCCGGATT-TATTAACTCGCA
* * * *
99222197 CGAATGCCTTTGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
*
99222237 CAAATGCCTTCGGGCTTAACCCGAATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
*
99222276 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGTA
1 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
* *
99222315 CGAACGCCTTCGG
1 CAAATGCCTTCGG
99222328 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 70 0.60
40 43 0.37
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
Found at i:99225122 original size:21 final size:20
Alignment explanation
Indices: 99225085--99225123 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
99225075 CTCTTGAAAC
99225085 AGGGAACACGCCCGTGTGAA
1 AGGGAACACGCCCGTGTGAA
* *
99225105 AGGGCAACATGCCTGTGTG
1 AGGG-AACACGCCCGTGTG
99225124 GTCCTTATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.26, C:0.23, G:0.36, T:0.15
Consensus pattern (20 bp):
AGGGAACACGCCCGTGTGAA
Found at i:99226519 original size:48 final size:47
Alignment explanation
Indices: 99226462--99226662 Score: 221
Period size: 46 Copynumber: 4.3 Consensus size: 47
99226452 TTCCAGTCAG
* * *
99226462 GTCTTACACTATCTTGTCTATCTCAAGGCCGATGCATGTCCTAAACAT
1 GTCTTACACTAGC-TCTCTATCTCAAGGCCGATGCATGTCCCAAACAT
* *
99226510 GTCTTACACTAGCTCTC-GTCTCAAAGCCGATGCATGTCCCAAACAT
1 GTCTTACACTAGCTCTCTATCTCAAGGCCGATGCATGTCCCAAACAT
* * * * *
99226556 GTCTTACACTGGCT-TAAATATCTCGAGGCCGATGCGTGTCCCAGACAT
1 GTCTTACACTAGCTCT--CTATCTCAAGGCCGATGCATGTCCCAAACAT
**
99226604 GTCTTACACTAGCTCTCATAT-T-GTGGCCGATGCATGTCCCAAACAT
1 GTCTTACACTAGCTCTC-TATCTCAAGGCCGATGCATGTCCCAAACAT
*
99226650 GTCTTACATTAGC
1 GTCTTACACTAGC
99226663 ACACATATCT
Statistics
Matches: 130, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
45 1 0.01
46 72 0.55
47 4 0.03
48 52 0.40
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.30
Consensus pattern (47 bp):
GTCTTACACTAGCTCTCTATCTCAAGGCCGATGCATGTCCCAAACAT
Found at i:99226578 original size:94 final size:94
Alignment explanation
Indices: 99226480--99226657 Score: 266
Period size: 94 Copynumber: 1.9 Consensus size: 94
99226470 CTATCTTGTC
* * *
99226480 TATCTCAAGGCCGATGCATGTCCTAAACATGTCTTACACTAGCTCTCGTCTCAAAGCCGATGCAT
1 TATCTCAAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATATCAAAGCCGATGCAT
99226545 GTCCCAAACATGTCTTACACTGGCTTAAA
66 GTCCCAAACATGTCTTACACTGGCTTAAA
* * * ****
99226574 TATCTCGAGGCCGATGCGTGTCCCAGACATGTCTTACACTAGCTCTCATATTGTGGCCGATGCAT
1 TATCTCAAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATATCAAAGCCGATGCAT
99226639 GTCCCAAACATGTCTTACA
66 GTCCCAAACATGTCTTACA
99226658 TTAGCACACA
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
94 74 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (94 bp):
TATCTCAAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATATCAAAGCCGATGCAT
GTCCCAAACATGTCTTACACTGGCTTAAA
Found at i:99230979 original size:14 final size:15
Alignment explanation
Indices: 99230960--99230989 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
99230950 GTTTATTATA
99230960 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
99230974 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
99230989 T
1 T
99230990 CTTAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:99233154 original size:41 final size:41
Alignment explanation
Indices: 99233106--99233238 Score: 112
Period size: 41 Copynumber: 3.2 Consensus size: 41
99233096 AAGCTTTAAG
99233106 CTGGTGAATATTATCGGGCTCCGAGCCTAGCAAGCGTAATGC
1 CTGGTGAATATT-TCGGGCTCCGAGCCTAGCAAGCGTAATGC
* * *** * *
99233148 CT-GTGAAATGATTTCAGACTTAAAGGTCTAGCAAGCTTTAA-G-
1 CTGGTG-AAT-ATTTCGGGCTCCGA-GCCTAGCAAGC-GTAATGC
*
99233190 CTGGTGAATATTGTCGGGCTCCGAGCCTAGCAGGCGTAATG-
1 CTGGTGAATATT-TCGGGCTCCGAGCCTAGCAAGCGTAATGC
99233231 CTGGTGAA
1 CTGGTGAA
99233239 ATGATATCGG
Statistics
Matches: 69, Mismatches: 15, Indels: 15
0.70 0.15 0.15
Matches are distributed among these distances:
40 3 0.04
41 24 0.35
42 22 0.32
43 17 0.25
44 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (41 bp):
CTGGTGAATATTTCGGGCTCCGAGCCTAGCAAGCGTAATGC
Found at i:99233280 original size:84 final size:84
Alignment explanation
Indices: 99232867--99233269 Score: 617
Period size: 84 Copynumber: 4.8 Consensus size: 84
99232857 GTGATGAATT
** *
99232867 TCGGGCTTTGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGAAAGC
1 TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGC
**
99232932 TTTAAGCTTTTGAATATTA
66 TTTAAGCTGGTGAATATTA
* * * *
99232951 TCGGGCTTCGAGCCTAGCAGGCGTAATGCCGATGAAATGATTTCAGACTTAAAGGTCTATCAAGC
1 TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGC
99233016 TTTAAGCTGGTGAATATTA
66 TTTAAGCTGGTGAATATTA
** * * *
99233035 TCAAGCTCCAAGCCTAGCAGGTGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAACAAGC
1 TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGC
99233100 TTTAAGCTGGTGAATATTA
66 TTTAAGCTGGTGAATATTA
* * *
99233119 TCGGGCTCCGAGCCTAGCAAGCGTAATGCCTGTGAAATGATTTCAGACTTAAAGGTCTAGCAAGC
1 TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGC
*
99233184 TTTAAGCTGGTGAATATTG
66 TTTAAGCTGGTGAATATTA
* * *
99233203 TCGGGCTCCGAGCCTAGCAGGCGTAATGCTGGTGAAATGATATCGGACTTAAAGGTCTAGCAGGC
1 TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGC
99233268 TT
66 TT
99233270 ATTGTCGGTG
Statistics
Matches: 289, Mismatches: 30, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
84 289 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (84 bp):
TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGC
TTTAAGCTGGTGAATATTA
Found at i:99235637 original size:48 final size:48
Alignment explanation
Indices: 99235543--99235646 Score: 122
Period size: 48 Copynumber: 2.2 Consensus size: 48
99235533 TGTGCTCAGC
** * *
99235543 GTAAGACCTATCTGGGATAGGCATCGGCACAGCCTAGTGAGTGCTAGT
1 GTAAGACCTATCTGGGATAGGCATCAACACAGCCTAGAGAGAGCTAGT
*
99235591 GTAAGACCTATC-GGGAATAGGCATCAACACAGGC-AGAGCAGAGCTAGT
1 GTAAGACCTATCTGGG-ATAGGCATCAACACAGCCTAGAG-AGAGCTAGT
*
99235639 ATAAGACC
1 GTAAGACC
99235647 ATAGTTGGAC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
47 6 0.12
48 42 0.88
ACGTcount: A:0.32, C:0.21, G:0.29, T:0.18
Consensus pattern (48 bp):
GTAAGACCTATCTGGGATAGGCATCAACACAGCCTAGAGAGAGCTAGT
Found at i:99249330 original size:13 final size:13
Alignment explanation
Indices: 99249312--99249336 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99249302 CATGGTCTAC
99249312 GATTTCATGAAAT
1 GATTTCATGAAAT
99249325 GATTTCATGAAA
1 GATTTCATGAAA
99249337 ATTTCATTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
GATTTCATGAAAT
Found at i:99252737 original size:40 final size:40
Alignment explanation
Indices: 99252692--99252859 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
99252682 CGGAATATAA
99252692 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
99252732 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
99252772 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * * *
99252812 CCGGATATAATTTCCAGCATAATTGTCTTTGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
99252852 CCGGATAT
1 CCGGATAT
99252860 CATTCAATTT
Statistics
Matches: 106, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 105 0.99
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:99254811 original size:48 final size:48
Alignment explanation
Indices: 99254757--99254979 Score: 313
Period size: 48 Copynumber: 4.6 Consensus size: 48
99254747 GGATCCCGTA
* * * *
99254757 TAAGACCATGTTTGGGGCATGGCATTGGCATTGTTATGTGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAGCCAGTG
* *
99254805 TAAGACCATGTCTGGGACATAGCATCGACATTGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAGCCAGTG
* *
99254853 TAAAACCATGTTTGGGACATGGCATCGGCATTG-TATTGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGTTA-TGTGAGCCAGTG
* * *
99254901 TAAGACCATGTCTGGGTCATGGCATCAGCATCGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAGCCAGTG
* *
99254949 CAAGACCATGTCTGGGACATGGCATCAGCAT
1 TAAGACCATGTCTGGGACATGGCATCGGCAT
99254980 GAGGCATCGT
Statistics
Matches: 156, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
47 2 0.01
48 152 0.97
49 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAGCCAGTG
Done.