Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 319 of 433
Found at i:99646269 original size:37 final size:37
Alignment explanation
Indices: 99646227--99646301 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
99646217 CAAAGATAGA
99646227 TTTGACATTGGGTTATTATCAATTGCGAGTAAAAGAT
1 TTTGACATTGGGTTATTATCAATTGCGAGTAAAAGAT
99646264 TTTGACATTGGGTTATTATCAATTGCGAGTAAAAGAT
1 TTTGACATTGGGTTATTATCAATTGCGAGTAAAAGAT
99646301 T
1 T
99646302 CAGACATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (37 bp):
TTTGACATTGGGTTATTATCAATTGCGAGTAAAAGAT
Found at i:99648943 original size:18 final size:18
Alignment explanation
Indices: 99648920--99648967 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
99648910 AAGTGTTTTT
* *
99648920 TTGAAAACCTTGTTTTAA
1 TTGAAAACCTTCTTTAAA
*
99648938 TTGAAAGCCCTTCTTTAAA
1 TTGAAA-ACCTTCTTTAAA
*
99648957 ATGAAAACCTT
1 TTGAAAACCTT
99648968 AATTACTTTG
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
18 10 0.42
19 14 0.58
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (18 bp):
TTGAAAACCTTCTTTAAA
Found at i:99649985 original size:29 final size:28
Alignment explanation
Indices: 99649922--99650010 Score: 97
Period size: 28 Copynumber: 3.1 Consensus size: 28
99649912 TACATACATG
* ***
99649922 CATATGGCCCACTAGGCCCAATCTTTTT
1 CATATGGCCCATTAGGCCCAATCAAATT
* * *
99649950 CGTATGGGCTATTAGGCCCAAATCAAATT
1 CATATGGCCCATTAGGCCC-AATCAAATT
*
99649979 CATATGGCCCATTAGGCCCAATCACATT
1 CATATGGCCCATTAGGCCCAATCAAATT
99650007 CATA
1 CATA
99650011 GTCATGCAAT
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
28 27 0.55
29 22 0.45
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (28 bp):
CATATGGCCCATTAGGCCCAATCAAATT
Found at i:99652318 original size:40 final size:40
Alignment explanation
Indices: 99652252--99652418 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
99652242 AAATTGAATG
* * *
99652252 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
99652291 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
99652331 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
99652371 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
99652411 ATATCCGG
1 ATATCCGG
99652419 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:99660305 original size:40 final size:40
Alignment explanation
Indices: 99660239--99660405 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
99660229 AAATTGAATG
* * *
99660239 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
99660278 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
99660318 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
99660358 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
99660398 ATATCCGG
1 ATATCCGG
99660406 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:99668211 original size:40 final size:40
Alignment explanation
Indices: 99668046--99668213 Score: 166
Period size: 40 Copynumber: 4.2 Consensus size: 40
99668036 AAATTGAATG
* * **
99668046 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * **
99668085 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
99668125 ATATCCGGGCTAAGAGCCCGAAGGC-ATTCGTGCGAGAT-ATT
1 ATATCCGGGCTAAGA-CCCGAAGGCAATT-GTGCGAG-TGATT
* *
99668166 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
99668206 ATATCCGG
1 ATATCCGG
99668214 TTATATTCCG
Statistics
Matches: 106, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
39 15 0.14
40 58 0.55
41 32 0.30
42 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:99669648 original size:16 final size:16
Alignment explanation
Indices: 99669627--99669666 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
99669617 GACTGAAGAT
99669627 TTCTTTATGTTTTGTA
1 TTCTTTATGTTTTGTA
99669643 TTCTTTATGTTTTGTA
1 TTCTTTATGTTTTGTA
99669659 TTCTTTAT
1 TTCTTTAT
99669667 TCTTCTGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.07, G:0.10, T:0.70
Consensus pattern (16 bp):
TTCTTTATGTTTTGTA
Found at i:99672241 original size:29 final size:29
Alignment explanation
Indices: 99672209--99672287 Score: 131
Period size: 29 Copynumber: 2.7 Consensus size: 29
99672199 ATGCCCTCCG
*
99672209 AGCTCGCACACTTAGTGCCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
99672238 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
99672267 AGCACGCACACTTAGTGCCAT
1 AGCTCGCACACTTAGTGCCAT
99672288 CTCGTCACCG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:99680077 original size:28 final size:29
Alignment explanation
Indices: 99680040--99680112 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
99680030 CCTTCGAGCT
99680040 CGCACACTTAGTGCCATAT-TTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
99680068 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
99680097 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
99680113 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
28 18 0.43
29 24 0.57
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:99685637 original size:40 final size:40
Alignment explanation
Indices: 99685582--99685784 Score: 214
Period size: 40 Copynumber: 5.1 Consensus size: 40
99685572 TGAATGATAC
* * * *
99685582 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
*
99685622 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGATTATAT
* ** *
99685662 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
* ** *
99685702 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
* * **
99685742 CCGGGTTAAGACACGAAGGCAATTGTGCTCGTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
99685781 CCGG
1 CCGG
99685785 TTAAATCCCG
Statistics
Matches: 142, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 10 0.07
40 127 0.89
41 5 0.04
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
Found at i:99694581 original size:40 final size:39
Alignment explanation
Indices: 99694526--99694688 Score: 186
Period size: 40 Copynumber: 4.1 Consensus size: 39
99694516 TGAATGATAC
* * *
99694526 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG-TTATAT
*
99694566 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGTTATAT
* * *
99694606 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGT--TATAT
* *
99694646 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
99694685 CCGG
1 CCGG
99694689 TTAAATCCCG
Statistics
Matches: 105, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
38 1 0.01
39 10 0.10
40 88 0.84
41 6 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTTATAT
Found at i:99707135 original size:38 final size:40
Alignment explanation
Indices: 99707036--99707237 Score: 206
Period size: 40 Copynumber: 5.2 Consensus size: 40
99707026 TATTCGAATG
* * *
99707036 ATAT-CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
* *
99707076 ATATCC-GACTAAGAT--CGAAGGCCTTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
99707114 A-ATCCGGGCTAAG-CCCGAAGGCA-TGGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
99707151 AAATCCGGG-TTAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * **
99707190 ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
99707230 ATATCCGG
1 ATATCCGG
99707238 TTAAACTCCG
Statistics
Matches: 136, Mismatches: 16, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
37 21 0.15
38 37 0.27
39 36 0.26
40 40 0.29
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:99707143 original size:37 final size:38
Alignment explanation
Indices: 99707102--99707215 Score: 151
Period size: 39 Copynumber: 3.0 Consensus size: 38
99707092 GAAGGCCTTT
99707102 GTGCGAGTTACTAATCCGGGCTAAG-CCCGAAGGCATG
1 GTGCGAGTTACTAATCCGGGCTAAGTCCCGAAGGCATG
* *
99707139 GTGCGAGTTACTAAATCCGGG-TTAGTCCCGAAGGCATTT
1 GTGCGAGTTACT-AATCCGGGCTAAGTCCCGAAGGCA-TG
* *
99707178 GTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCAT
1 GTGCGAGTTACTA-ATCCGGGCTAAGTCCCGAAGGCAT
99707216 TTGAACGAGT
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
37 15 0.22
38 19 0.28
39 20 0.30
40 13 0.19
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (38 bp):
GTGCGAGTTACTAATCCGGGCTAAGTCCCGAAGGCATG
Found at i:99707225 original size:40 final size:38
Alignment explanation
Indices: 99707091--99707218 Score: 170
Period size: 38 Copynumber: 3.3 Consensus size: 38
99707081 CGACTAAGAT
* *
99707091 CGAAGGCCTTTGTGCGAGTTACTAATCCGGGCTAAG-CC
1 CGAAGGCATTTGTGCGAGTTACTAAACCGGGCT-AGTCC
* *
99707129 CGAAGGCA-TGGTGCGAGTTACTAAATCCGGGTTAGTCC
1 CGAAGGCATTTGTGCGAGTTACTAAA-CCGGGCTAGTCC
99707167 CGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCC
1 CGAAGGCATTTGTGCGAGTTACTA-AACCGGGCTA-GTCC
99707207 CGAAGGCATTTG
1 CGAAGGCATTTG
99707219 AACGAGTAGC
Statistics
Matches: 79, Mismatches: 6, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
37 17 0.22
38 23 0.29
39 21 0.27
40 18 0.23
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.25
Consensus pattern (38 bp):
CGAAGGCATTTGTGCGAGTTACTAAACCGGGCTAGTCC
Found at i:99715217 original size:39 final size:39
Alignment explanation
Indices: 99715072--99715253 Score: 169
Period size: 40 Copynumber: 4.7 Consensus size: 39
99715062 TTCGAATGAT
* * *
99715072 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAT
1 ATCCGGG-TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
99715112 ATCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGTTACT-A
1 ATCCGG-GTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* **
99715151 ATCCGGCTAAG--CCGAAGGCATGGGTGCGAGTTACTAA
1 ATCCGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
99715188 ATCCGGGTTAGTCCCGAAGGCATTTGTGCGAGTTGCTATA
1 ATCCGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
99715228 A-CCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGG-TAAGTCCCGAAGGCATTTG
99715254 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
36 21 0.17
37 10 0.08
38 5 0.04
39 33 0.28
40 43 0.36
41 8 0.07
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
ATCCGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:99715260 original size:40 final size:39
Alignment explanation
Indices: 99715177--99715272 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 39
99715167 GGCATGGGTG
* * **
99715177 CGAGTTACTA-AATCCGGGTTAGTCCCGAAGGCATTTGTG
1 CGAGTTGCTATAA-CCGGGCTAGTCCCGAAGGCATTTGAA
99715216 CGAGTTGCTATAACCGGGCTATGTCCCGAAGGCATTTGAA
1 CGAGTTGCTATAACCGGGCTA-GTCCCGAAGGCATTTGAA
* *
99715256 CGAGTAGCTATATCCGG
1 CGAGTTGCTATAACCGG
99715273 TTAAACTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
39 16 0.33
40 33 0.67
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CGAGTTGCTATAACCGGGCTAGTCCCGAAGGCATTTGAA
Found at i:99722483 original size:96 final size:95
Alignment explanation
Indices: 99722180--99722508 Score: 419
Period size: 96 Copynumber: 3.5 Consensus size: 95
99722170 GACATTTGGG
99722180 TGAAATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTG
1 TGAAATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCA-CCACGATATGAGAGCCAGTG
99722245 TAAGACCATGTTTGGAACATGGCATCGGCAT
65 TAAGACCATGTTTGGAACATGGCATCGGCAT
* * * * *
99722276 TGAAATGTGAGTTAGTGTAAGACCATGTCTGAGACA--ACATCGGCCACGATATGAGAGCCAGTA
1 TGAAATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-ACCACGATATGAGAGCCAGTG
*
99722339 TAAGACCATGTTTGGAACATGGCATCAGCAT
65 TAAGACCATGTTTGGAACATGGCATCGGCAT
* * * * * *
99722370 TAAAATGGGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGAGATGAGAGCTAGTG
1 TGAAATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCACCA-CGATATGAGAGCCAGTG
* * * *
99722435 TAGGACCATGTCTGGGACATGGCATCGGCCT
65 TAAGACCATGTTTGGAACATGGCATCGGCAT
* * * * * *
99722466 CGACATATGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC
1 TGAAATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
99722509 GGCAATTCAC
Statistics
Matches: 199, Mismatches: 30, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
94 85 0.43
95 2 0.01
96 112 0.56
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (95 bp):
TGAAATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCACCACGATATGAGAGCCAGTGT
AAGACCATGTTTGGAACATGGCATCGGCAT
Found at i:99722509 original size:48 final size:48
Alignment explanation
Indices: 99722181--99722512 Score: 325
Period size: 48 Copynumber: 7.0 Consensus size: 48
99722171 ACATTTGGGT
* * *
99722181 GAAATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCA-C
1 GAAATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATC-GGCATC
* * * *
99722229 GATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
1 GAAATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATC
* * *
99722277 GAAATGTGAGTTAGTGTAAGACCATGTCT-GAGACA--ACATCGGCCA-C
1 GAAATGAGAGCTAGTGTAAGACCATGTCTGGA-ACATGGCATCGG-CATC
* * * * * *
99722323 GATATGAGAGCCAGTATAAGACCATGTTTGGAACATGGCATCAGCATT
1 GAAATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATC
* * * ** *
99722371 AAAATGGGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACATT
1 GAAATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATC
* * * *
99722419 GAGATGAGAGCTAGTGTAGGACCATGTCTGGGACATGGCATCGGCCTC
1 GAAATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATC
* * *
99722467 GACAT-ATGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCA
1 GAAATGA-GAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCA
99722513 ATTCACCCTT
Statistics
Matches: 231, Mismatches: 45, Indels: 16
0.79 0.15 0.05
Matches are distributed among these distances:
46 32 0.14
47 12 0.05
48 187 0.81
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
GAAATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATC
Found at i:99728063 original size:39 final size:39
Alignment explanation
Indices: 99728009--99728171 Score: 272
Period size: 39 Copynumber: 4.2 Consensus size: 39
99727999 TGTGAATGAA
99728009 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
99728048 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
99728087 TGTGCAAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * **
99728126 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCGTT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
99728166 TGTGCG
1 TGTGCG
99728172 GGTTACCATA
Statistics
Matches: 117, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 101 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:99735901 original size:40 final size:40
Alignment explanation
Indices: 99735774--99735923 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
99735764 TATAACCCGT
* *
99735774 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
* ** *
99735813 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
99735853 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* *
99735893 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
99735924 CATTCAATTT
Statistics
Matches: 92, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 19 0.21
40 73 0.79
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:99737378 original size:16 final size:16
Alignment explanation
Indices: 99737357--99737390 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
99737347 ACACCTTGAA
99737357 ATTCGGCCATGCTCAT
1 ATTCGGCCATGCTCAT
99737373 ATTCGGCCATGCTCAT
1 ATTCGGCCATGCTCAT
99737389 AT
1 AT
99737391 AATATATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.32
Consensus pattern (16 bp):
ATTCGGCCATGCTCAT
Found at i:99738271 original size:78 final size:79
Alignment explanation
Indices: 99738107--99738272 Score: 203
Period size: 78 Copynumber: 2.1 Consensus size: 79
99738097 AAATTGAATG
* *
99738107 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCA
99738172 ATTGTGCTAGTGGCT
65 ATTGTGCTAGTGGCT
* * * * *
99738187 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
* *
99738250 TTTGTGC-ACGTGGTT
65 ATTGTGCTA-GTGGCT
99738265 ATATCCGG
1 ATATCCGG
99738273 TTATATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.62
79 3 0.04
80 24 0.32
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:99744524 original size:12 final size:12
Alignment explanation
Indices: 99744507--99744533 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
99744497 AATTAAAATT
99744507 TATTTTGATGCC
1 TATTTTGATGCC
99744519 TATTTTGATGCC
1 TATTTTGATGCC
99744531 TAT
1 TAT
99744534 GATATGTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.52
Consensus pattern (12 bp):
TATTTTGATGCC
Found at i:99746187 original size:40 final size:40
Alignment explanation
Indices: 99746102--99746252 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
99746092 AATTGAATGA
* * * *
99746102 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
99746142 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
99746183 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
99746222 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
99746253 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:99746266 original size:40 final size:40
Alignment explanation
Indices: 99746139--99746268 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
99746129 ATGCTGGAAA
* * *
99746139 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
99746179 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
99746219 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
99746259 TTATATCCGG
1 TTATATCCGG
99746269 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:99746267 original size:80 final size:80
Alignment explanation
Indices: 99746101--99746268 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
99746091 AAATTGAATG
* *
99746101 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
99746166 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
99746181 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
99746244 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
99746261 ATATCCGG
1 ATATCCGG
99746269 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:99754866 original size:13 final size:14
Alignment explanation
Indices: 99754846--99754879 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
99754836 CAATTAAAAA
*
99754846 ATAAACATATCAAT
1 ATAAACATATAAAT
99754860 A-AAACATATAAAT
1 ATAAACATATAAAT
99754873 ATAAACA
1 ATAAACA
99754880 AGGTCAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.65, C:0.12, G:0.00, T:0.24
Consensus pattern (14 bp):
ATAAACATATAAAT
Found at i:99757118 original size:39 final size:39
Alignment explanation
Indices: 99757074--99757266 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
99757064 TGTGTATGAA
*
99757074 TGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
99757113 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
99757152 GGTGCGAGCTATGATATCCGGGCTAAG-CCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
99757190 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
99757230 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
99757267 GTTTGAACGA
Statistics
Matches: 135, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
38 34 0.25
39 61 0.45
40 40 0.30
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:99757204 original size:77 final size:79
Alignment explanation
Indices: 99757083--99757227 Score: 267
Period size: 77 Copynumber: 1.9 Consensus size: 79
99757073 ATGTGCGAAT
99757083 TATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAG
1 TATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAG
99757147 GCAATGGTGCGAGC
66 GCAATGGTGCGAGC
*
99757161 TATGATATCCGGGCTAAG-CCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAG
1 TATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAG
99757225 GCA
66 GCA
99757228 TTTGTGCGGG
Statistics
Matches: 65, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
77 37 0.57
78 28 0.43
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.22
Consensus pattern (79 bp):
TATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAG
GCAATGGTGCGAGC
Found at i:99764290 original size:39 final size:39
Alignment explanation
Indices: 99764236--99764398 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
99764226 TGTGTATGAA
* *
99764236 TGTGCGAATTGTGATATCCGGGCTAAGCCCAAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
99764275 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
99764314 GGTGCGAGCTATGATATCCGGGCTAAGCTCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
99764353 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
99764393 TGTGCG
1 TGTGCG
99764399 GGTTACCATA
Statistics
Matches: 111, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 95 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:99764414 original size:40 final size:40
Alignment explanation
Indices: 99764253--99764434 Score: 136
Period size: 39 Copynumber: 4.6 Consensus size: 40
99764243 ATTGTGATAT
* * *** *
99764253 CCGGGCTAAG-CCCAAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * * ** *
99764292 CCGGGCTAAG-CCCGAAGGCAATGGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * *** *
99764331 CCGGGCTAAG-CTCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
99764370 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * *
99764410 CCGGGCTATGTCCTGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
99764435 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 79 0.65
40 43 0.35
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:99766743 original size:40 final size:39
Alignment explanation
Indices: 99766677--99766827 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
99766667 AAATTGAATG
* * *
99766677 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
99766716 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
99766756 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
99766796 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
99766828 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:99766841 original size:40 final size:39
Alignment explanation
Indices: 99766714--99766843 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
99766704 ATGCTGGAAA
* *
99766714 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
99766754 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
99766794 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
99766834 TTATATCCGG
1 TTATATCCGG
99766844 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:99769247 original size:41 final size:41
Alignment explanation
Indices: 99769202--99769319 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
99769192 TGAAAGATAA
99769202 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
99769243 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99769273 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99769314 ATGTAG
1 ATGTAG
99769320 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:99769258 original size:71 final size:71
Alignment explanation
Indices: 99769170--99769333 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
99769160 GAGATGTATC
99769170 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99769235 AGGACA
66 AGGACA
99769241 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99769306 AGGACA
66 AGGACA
99769312 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
99769334 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:99776822 original size:41 final size:41
Alignment explanation
Indices: 99776777--99776894 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
99776767 TGAAAGATAA
99776777 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
99776818 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99776848 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
99776889 ATGTAG
1 ATGTAG
99776895 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:99776833 original size:71 final size:71
Alignment explanation
Indices: 99776745--99776908 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
99776735 GAGATGTATC
99776745 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99776810 AGGACA
66 AGGACA
99776816 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
99776881 AGGACA
66 AGGACA
99776887 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
99776909 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:99785352 original size:40 final size:40
Alignment explanation
Indices: 99785297--99785506 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
99785287 AACATTGGAA
99785297 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
99785337 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
99785377 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
99785417 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
99785456 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
99785497 CTATATCCGG
1 ATATATCCGG
99785507 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:99799736 original size:27 final size:28
Alignment explanation
Indices: 99799680--99799749 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
99799670 AAATTTGTAC
99799680 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
99799708 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
99799735 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
99799750 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:99805418 original size:42 final size:42
Alignment explanation
Indices: 99805340--99805419 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
99805330 GTGCAGGTTT
* * *
99805340 CACACGGCCAAGACACACGCCTGTGTTCTAGGCCGTGTAGCA
1 CACACGGCCAAGACACACACCCGTGTTCTAGCCCGTGTAGCA
**
99805382 CACACGGCTGAGACACACACCCGTGTCTCT-GCCCGTGT
1 CACACGGCCAAGACACACACCCGTGT-TCTAGCCCGTGT
99805420 GCTCAATCCT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
42 29 0.91
43 3 0.09
ACGTcount: A:0.21, C:0.36, G:0.25, T:0.17
Consensus pattern (42 bp):
CACACGGCCAAGACACACACCCGTGTTCTAGCCCGTGTAGCA
Found at i:99813879 original size:29 final size:29
Alignment explanation
Indices: 99813846--99813977 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
99813836 GTGACGAGAT
*
99813846 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
99813875 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
99813904 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
99813933 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
99813962 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
99813978 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:99821758 original size:29 final size:29
Alignment explanation
Indices: 99821725--99821798 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
99821715 GTGACGAGAT
99821725 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
99821754 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
99821783 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
99821799 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:99821814 original size:29 final size:29
Alignment explanation
Indices: 99821782--99821857 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
99821772 CTGGAAATAT
* *
99821782 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
99821811 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
99821840 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
99821858 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:99821825 original size:58 final size:58
Alignment explanation
Indices: 99821725--99821857 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
99821715 GTGACGAGAT
* * * * * *
99821725 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
99821783 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
99821841 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
99821858 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:99823367 original size:53 final size:53
Alignment explanation
Indices: 99823286--99823435 Score: 203
Period size: 53 Copynumber: 2.8 Consensus size: 53
99823276 CATACACGGT
* *
99823286 TCACATATCATACCGAAGCCATATCCCAGATATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAGATATGGTCTTATACGGAATCACATTA
* *
99823341 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGATATGGTCTTATACGGAATCACATTA
** * *
99823394 TCACATTGCACCGATGCCATAGCCC-GGTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGATATGGTCTTATACGG
99823436 GCGCACTTAT
Statistics
Matches: 87, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
52 15 0.17
53 65 0.75
54 1 0.01
55 6 0.07
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGATATGGTCTTATACGGAATCACATTA
Found at i:99824927 original size:49 final size:48
Alignment explanation
Indices: 99824867--99825184 Score: 182
Period size: 46 Copynumber: 6.8 Consensus size: 48
99824857 ACATTGAAGT
*
99824867 GATGCCCTGTCCCAGACAAGTCTTACACTGACTTTCATATATCGAGCAC
1 GATGCCATGTCCCAGACAAGTCTTACACTGACTTTCATATATCGAGC-C
* * * * *
99824916 GATGCCATGTCCTAGACAAGTCTTACACTGGCTCTCATCTATCG-G-T
1 GATGCCATGTCCCAGACAAGTCTTACACTGACTTTCATATATCGAGCC
* * * * * * *
99824962 AATGCCATGTCCTAGACAGGTCTTACACTGAC--ACACA-A-CAAGCT
1 GATGCCATGTCCCAGACAAGTCTTACACTGACTTTCATATATCGAGCC
* * * *
99825006 GACGCCATGTCCCAAACAGGTCTTACACT-AGCTTGT-ATATCTCGAGGCC
1 GATGCCATGTCCCAGACAAGTCTTACACTGA-CTT-TCATATATCGA-GCC
* * * * * *
99825055 GATG-CATGTCCCAGACATGTCTTACACT-AGCTCTC--GTCTCAATGTC
1 GATGCCATGTCCCAGACAAGTCTTACACTGA-CTTTCATATATCGA-GCC
* * ** *
99825101 GAT-CCATGTCCCAGACATGTCTTACACTGGCACTCATGATGT-G-GCC
1 GATGCCATGTCCCAGACAAGTCTTACACTGACTTTCAT-ATATCGAGCC
* * *
99825147 GATG-CATGTCCCAGACATGTCTTACACTGGCTTACATA
1 GATGCCATGTCCCAGACAAGTCTTACACTGACTTTCATA
99825185 CCACCTAATG
Statistics
Matches: 214, Mismatches: 39, Indels: 36
0.74 0.13 0.12
Matches are distributed among these distances:
42 1 0.00
43 3 0.01
44 29 0.14
45 1 0.00
46 104 0.49
47 1 0.00
48 29 0.14
49 46 0.21
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACAAGTCTTACACTGACTTTCATATATCGAGCC
Found at i:99824985 original size:46 final size:48
Alignment explanation
Indices: 99824868--99824993 Score: 166
Period size: 49 Copynumber: 2.6 Consensus size: 48
99824858 CATTGAAGTG
* * *
99824868 ATGCCCTGTCCCAGACAAGTCTTACACTGACTTTCATATATCGAGCAC
1 ATGCCATGTCCTAGACAAGTCTTACACTGACTCTCATATATCGAGCAC
* * *
99824916 GATGCCATGTCCTAGACAAGTCTTACACTGGCTCTCATCTATCG-GTA-
1 -ATGCCATGTCCTAGACAAGTCTTACACTGACTCTCATATATCGAGCAC
*
99824963 ATGCCATGTCCTAGACAGGTCTTACACTGAC
1 ATGCCATGTCCTAGACAAGTCTTACACTGAC
99824994 ACACAACAAG
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
46 29 0.42
48 2 0.03
49 38 0.55
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCTAGACAAGTCTTACACTGACTCTCATATATCGAGCAC
Found at i:99825123 original size:138 final size:138
Alignment explanation
Indices: 99824874--99825129 Score: 317
Period size: 138 Copynumber: 1.8 Consensus size: 138
99824864 AGTGATGCCC
* *
99824874 TGTCCCAGACAAGTCTTACACTGACTTTCATATATCGAGCACGATGCCATGTCCTAGACAAGTCT
1 TGTCCCAAACAAGTCTTACACTGACTTTCATATATCGAGCACGATGCCATGTCCCAGACAAGTCT
* *
99824939 TACACTGGCTCTCATCTATCGGTAATGCCATGTCCTAGACAGGTCTTACACTGACACACAACAAG
66 TACACTAGCTCTCATCTATC-GTAATGCCATGTCCCAGACAGGTCTTACACTGACACACAACAAG
99825004 CTGACGCCA
130 CTGACGCCA
* * *
99825013 TGTCCCAAACAGGTCTTACACT-AGCTTGT-ATATCTCGAGGC-CGATG-CATGTCCCAGACATG
1 TGTCCCAAACAAGTCTTACACTGA-CTT-TCATATATCGA-GCACGATGCCATGTCCCAGACAAG
* * *
99825074 TCTTACACTAGCTCTCGTCTCAAT-GTCGAT-CCATGTCCCAGACATGTCTTACACTG
63 TCTTACACTAGCTCTCATCT--ATCGT-AATGCCATGTCCCAGACAGGTCTTACACTG
99825130 GCACTCATGA
Statistics
Matches: 101, Mismatches: 10, Indels: 13
0.81 0.08 0.10
Matches are distributed among these distances:
138 58 0.57
139 38 0.38
140 5 0.05
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (138 bp):
TGTCCCAAACAAGTCTTACACTGACTTTCATATATCGAGCACGATGCCATGTCCCAGACAAGTCT
TACACTAGCTCTCATCTATCGTAATGCCATGTCCCAGACAGGTCTTACACTGACACACAACAAGC
TGACGCCA
Found at i:99827260 original size:4 final size:4
Alignment explanation
Indices: 99827251--99827284 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
99827241 TTAATTACAT
* *
99827251 TAAA TAAA TAAA TAAT TAAA TAAA TAAA AAAA TA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TA
99827285 TGTTTTTGCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:99828243 original size:3 final size:3
Alignment explanation
Indices: 99828235--99828287 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
99828225 GTCATTTTAC
*
99828235 TAT TAT TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
99828283 TAT TA
1 TAT TA
99828288 CCATTGATAC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:99828465 original size:22 final size:21
Alignment explanation
Indices: 99828440--99828494 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 21
99828430 GTTTTGTTAC
99828440 TTTTTATTAGTTTTTACT-TTT
1 TTTTTA-TAGTTTTTACTGTTT
99828461 ATTTTTAT-GTTTTTACTGTTT
1 -TTTTTATAGTTTTTACTGTTT
*
99828482 TTATTACTAGTTT
1 TTTTTA-TAGTTT
99828495 AGTTATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
20 14 0.48
21 5 0.17
22 10 0.34
ACGTcount: A:0.16, C:0.05, G:0.07, T:0.71
Consensus pattern (21 bp):
TTTTTATAGTTTTTACTGTTT
Found at i:99831486 original size:45 final size:45
Alignment explanation
Indices: 99831385--99831656 Score: 356
Period size: 45 Copynumber: 6.1 Consensus size: 45
99831375 TTTTCTCAAA
* * * *
99831385 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCTG-AT-ATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT-ATC
* * *
99831427 TCACCGACATTATAGCCTGTTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAATATC
*
99831472 TCACCGGCATTATAGCCTGCTAGGCTTAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
*
99831517 TCACCTGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* * *
99831562 TCACCTGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* * *
99831607 TCACCGGCATTATAACCTGCTAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
99831652 TCACC
1 TCACC
99831657 AGTTCTTTCC
Statistics
Matches: 207, Mismatches: 17, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
42 10 0.05
43 13 0.06
44 7 0.03
45 176 0.85
46 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
Found at i:99836834 original size:34 final size:35
Alignment explanation
Indices: 99836761--99836855 Score: 97
Period size: 34 Copynumber: 2.8 Consensus size: 35
99836751 ATGCCATATT
* * *
99836761 TACTG-TACTAAAATGGGCTAAGGCCCAGATTGCC
1 TACTGTTACTGAAATGGGCTAAGGCCCAGACTGCA
* *
99836795 T-CTGTTACTGAAATGGGCTCAGGCCCAGGCTG-A
1 TACTGTTACTGAAATGGGCTAAGGCCCAGACTGCA
* *
99836828 TACTGTTAATGAAAAGGGACTAAGGCCC
1 TACTGTTACTGAAATGGG-CTAAGGCCC
99836856 TAACTACGGG
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
33 4 0.08
34 38 0.76
35 8 0.16
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (35 bp):
TACTGTTACTGAAATGGGCTAAGGCCCAGACTGCA
Found at i:99845524 original size:35 final size:35
Alignment explanation
Indices: 99845476--99845601 Score: 108
Period size: 35 Copynumber: 3.5 Consensus size: 35
99845466 GATGTGCCAA
** *
99845476 CACTAGTTAGATAAACTAACGAAGATTGCATCTAG
1 CACTAGTCGGATAAACTAACGAAGATTGTATCTAG
* * * * *
99845511 CACTAGACGGATAAACTGACGATTATAATTGTGTGCCCAG
1 CACTAGTCGGATAAACTAACGA--A-GATTGTAT--CTAG
* * *
99845551 CACTAGTCAGATAAACTAACAAAGATTGTACCTAG
1 CACTAGTCGGATAAACTAACGAAGATTGTATCTAG
99845586 CACTAGTCGGATAAAC
1 CACTAGTCGGATAAAC
99845602 AGACAAAGAG
Statistics
Matches: 69, Mismatches: 17, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
35 36 0.52
37 6 0.09
38 6 0.09
40 21 0.30
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (35 bp):
CACTAGTCGGATAAACTAACGAAGATTGTATCTAG
Found at i:99845556 original size:75 final size:74
Alignment explanation
Indices: 99845460--99845601 Score: 205
Period size: 75 Copynumber: 1.9 Consensus size: 74
99845450 AACCAATGAG
* * *
99845460 TATAATGATGTGCCAACACTAGTTAGATAAACTAACGAAGATTGCATCTAGCACTAGACGGATAA
1 TATAATGATGTGCCAACACTAGTCAGATAAACTAACAAAGATTGCACCTAGCACTAGACGGATAA
99845525 ACTGACGAT
66 ACTGACGAT
* * *
99845534 TATAATTG-TGTGCCCAGCACTAGTCAGATAAACTAACAAAGATTGTACCTAGCACTAGTCGGAT
1 TATAA-TGATGTG-CCAACACTAGTCAGATAAACTAACAAAGATTGCACCTAGCACTAGACGGAT
99845598 AAAC
64 AAAC
99845602 AGACAAAGAG
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
74 9 0.15
75 51 0.85
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (74 bp):
TATAATGATGTGCCAACACTAGTCAGATAAACTAACAAAGATTGCACCTAGCACTAGACGGATAA
ACTGACGAT
Found at i:99848718 original size:47 final size:45
Alignment explanation
Indices: 99848650--99848866 Score: 156
Period size: 46 Copynumber: 4.7 Consensus size: 45
99848640 TTGTGTAAGT
*
99848650 TAGTGCAAGACATGTCTGGGACATGCATCGGCCACATT-ATGA-GA-GC
1 TAGTGTAAGACATGTCTGGGACATGCATCGG---CATTGA-GACGACGC
99848696 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGCGC
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGACGA-CGC
* * ** * * * *
99848744 TGGTGTAAGACATGTCTGGGACATGCGTCAACCTCGAGACATAAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAC-GACGC
* * * * * *
99848790 CAGTGTAAGACATGTCTAGGACATGCATCGGC-TACGAGATG-TGT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCAT-TGAGACGACGC
*
99848834 TAGTGTAAGACCATGTATGGGACATGGCATCGG
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
99848867 TACAGATATA
Statistics
Matches: 139, Mismatches: 22, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
44 10 0.07
45 19 0.14
46 63 0.45
47 29 0.21
48 18 0.13
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (45 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGACGC
Found at i:99854679 original size:15 final size:15
Alignment explanation
Indices: 99854618--99854686 Score: 54
Period size: 15 Copynumber: 4.7 Consensus size: 15
99854608 ATCTTAACAC
*
99854618 TAATTAAATATAT-T
1 TAATTAAAAATATAT
* *
99854632 TCATTAAATAATCTA-
1 TAATTAAA-AATATAT
*
99854647 TAATTAAATAAT-TTT
1 TAATTAAA-AATATAT
99854662 TAATTAAAAATATAT
1 TAATTAAAAATATAT
*
99854677 TAAATAAAAA
1 TAATTAAAAA
99854687 AAGGACAACA
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
14 11 0.25
15 33 0.75
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (15 bp):
TAATTAAAAATATAT
Found at i:99860057 original size:9 final size:9
Alignment explanation
Indices: 99860043--99860074 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
99860033 GCAATTTAAT
99860043 TTAATTTTA
1 TTAATTTTA
99860052 TTAATTTTA
1 TTAATTTTA
99860061 TT-A-TTTA
1 TTAATTTTA
99860068 TTAATTT
1 TTAATTT
99860075 AATTTTTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 6 0.29
8 2 0.10
9 13 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (9 bp):
TTAATTTTA
Found at i:99870275 original size:15 final size:15
Alignment explanation
Indices: 99870255--99870284 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
99870245 CAACACTTGT
99870255 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
99870270 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
99870285 AAATACATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:99876689 original size:23 final size:24
Alignment explanation
Indices: 99876628--99876739 Score: 92
Period size: 23 Copynumber: 4.9 Consensus size: 24
99876618 TCGAAATATT
* *
99876628 AGCTCGTA-AGATCTTACTATTTC
1 AGCTCGTATAGAGCTTACTGTTTC
* * * *
99876651 AGATCAT-TGGAACTTACTGTTTC
1 AGCTCGTATAGAGCTTACTGTTTC
99876674 AGCTCGTAT-GAGCTTACTG-TTC
1 AGCTCGTATAGAGCTTACTGTTTC
* *
99876696 AGCTC-AATAGAGCTTACTGTTTT
1 AGCTCGTATAGAGCTTACTGTTTC
* *
99876719 AGCTC-AATAGATCTTACTGTT
1 AGCTCGTATAGAGCTTACTGTT
99876740 CATTAGCTTA
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
21 2 0.03
22 18 0.24
23 53 0.72
24 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (24 bp):
AGCTCGTATAGAGCTTACTGTTTC
Found at i:99876699 original size:22 final size:22
Alignment explanation
Indices: 99876663--99876741 Score: 97
Period size: 23 Copynumber: 3.5 Consensus size: 22
99876653 ATCATTGGAA
*
99876663 CTTACTGTTTCAGCTC-GTATGAG
1 CTTACTG-TTCAGCTCAATA-GAG
99876686 CTTACTGTTCAGCTCAATAGAG
1 CTTACTGTTCAGCTCAATAGAG
* *
99876708 CTTACTGTTTTAGCTCAATAGAT
1 CTTACTG-TTCAGCTCAATAGAG
99876731 CTTACTGTTCA
1 CTTACTGTTCA
99876742 TTAGCTTAGG
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
22 21 0.42
23 29 0.58
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (22 bp):
CTTACTGTTCAGCTCAATAGAG
Found at i:99884783 original size:38 final size:38
Alignment explanation
Indices: 99884705--99884889 Score: 205
Period size: 38 Copynumber: 4.9 Consensus size: 38
99884695 GTATAGACGA
* * * *
99884705 TGTTATCAGGCTACGTGGCTAGAAGG-CTTTGTG-CTGG
1 TGTTATCAGGCTAAGTGCCTAGCAGGCCTTTGTGTC-AG
* ** *
99884742 TGTTATTAGGCTTTGTGCATAGCAGGCCTTTGTGTCAG
1 TGTTATCAGGCTAAGTGCCTAGCAGGCCTTTGTGTCAG
* * **
99884780 TGTTATCAAGATAAGTGCCTAGCAGGCCTTTGTACCAG
1 TGTTATCAGGCTAAGTGCCTAGCAGGCCTTTGTGTCAG
*
99884818 TGTTATCAGGCTAAGTGCCTAGTAGGCCTTTGTGAT-AG
1 TGTTATCAGGCTAAGTGCCTAGCAGGCCTTTGTG-TCAG
*
99884856 TGTTATCAGGCTAAGTGCCTAGCAGGCCCTTGTG
1 TGTTATCAGGCTAAGTGCCTAGCAGGCCTTTGTG
99884890 CTGCTGTTTA
Statistics
Matches: 123, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
37 20 0.16
38 102 0.83
39 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.29, T:0.33
Consensus pattern (38 bp):
TGTTATCAGGCTAAGTGCCTAGCAGGCCTTTGTGTCAG
Found at i:99884906 original size:38 final size:39
Alignment explanation
Indices: 99884707--99884917 Score: 170
Period size: 38 Copynumber: 5.6 Consensus size: 39
99884697 ATAGACGATG
* * * *
99884707 TTATCAGGCTACGTGGCTAGAAGG-CTTTGTGCTGGTG-
1 TTATCAGGCTAAGTGCCTAGCAGGCCTTTGTGCTGCTGT
* ** * *
99884744 TTATTAGGCTTTGTGCATAGCAGGCCTTTGTG-T-CAGT
1 TTATCAGGCTAAGTGCCTAGCAGGCCTTTGTGCTGCTGT
* * * *
99884781 GTTATCAAGATAAGTGCCTAGCAGGCCTTTGTAC--CAGT
1 -TTATCAGGCTAAGTGCCTAGCAGGCCTTTGTGCTGCTGT
* *
99884819 GTTATCAGGCTAAGTGCCTAGTAGGCCTTTGTGATAG-TG-
1 -TTATCAGGCTAAGTGCCTAGCAGGCCTTTGTGCT-GCTGT
*
99884858 TTATCAGGCTAAGTGCCTAGCAGGCCCTTGTGCTGCTGT
1 TTATCAGGCTAAGTGCCTAGCAGGCCTTTGTGCTGCTGT
* *
99884897 TTA-CGGGCTATGTGCCTAGCA
1 TTATCAGGCTAAGTGCCTAGCA
99884918 AGCTGTGTGC
Statistics
Matches: 139, Mismatches: 26, Indels: 17
0.76 0.14 0.09
Matches are distributed among these distances:
36 1 0.01
37 20 0.14
38 114 0.82
39 3 0.02
40 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.33
Consensus pattern (39 bp):
TTATCAGGCTAAGTGCCTAGCAGGCCTTTGTGCTGCTGT
Found at i:99884906 original size:76 final size:76
Alignment explanation
Indices: 99884705--99884934 Score: 213
Period size: 76 Copynumber: 3.1 Consensus size: 76
99884695 GTATAGACGA
* * * * * *
99884705 TGTTATCAGGCTACGTGGCTAGAAGG-CTTTGTGCTGGTGTTATTA-GGCTTTGTGCATAGCAGG
1 TGTTATCAGGCTAAGTGCCTAGCAGGCCTTTGTGCTGCTG-TATTACGGCTATGTGCCTAGCAGG
99884768 CCTTTGTGTCAG
65 CCTTTGTGTCAG
* * * * * * *
99884780 TGTTATCAAGATAAGTGCCTAGCAGGCCTTTGTAC--CAGTGTTATCAGGCTAAGTGCCTAGTAG
1 TGTTATCAGGCTAAGTGCCTAGCAGGCCTTTGTGCTGCTGTATTA-C-GGCTATGTGCCTAGCAG
99884843 GCCTTTGTGAT-AG
64 GCCTTTGTG-TCAG
* *
99884856 TGTTATCAGGCTAAGTGCCTAGCAGGCCCTTGTGCTGCTGT-TTACGGGCTATGTGCCTAGCAAG
1 TGTTATCAGGCTAAGTGCCTAGCAGGCCTTTGTGCTGCTGTATTAC-GGCTATGTGCCTAGCAGG
* *
99884920 -CTGTGTGCCAG
65 CCTTTGTGTCAG
99884931 TGTT
1 TGTT
99884935 TAACAAGATT
Statistics
Matches: 123, Mismatches: 24, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
73 4 0.03
74 1 0.01
75 33 0.27
76 78 0.63
77 4 0.03
78 3 0.02
ACGTcount: A:0.18, C:0.19, G:0.30, T:0.33
Consensus pattern (76 bp):
TGTTATCAGGCTAAGTGCCTAGCAGGCCTTTGTGCTGCTGTATTACGGCTATGTGCCTAGCAGGC
CTTTGTGTCAG
Found at i:99884912 original size:114 final size:112
Alignment explanation
Indices: 99884705--99884934 Score: 248
Period size: 114 Copynumber: 2.0 Consensus size: 112
99884695 GTATAGACGA
* * * * * **
99884705 TGTTATCAGGCTACGTGGCTAGAAGGCTTTGTGCTGGTGTTATTAGGCTTTGTGCATAGCAGGCC
1 TGTTATCAGGCTAAGTGCCTAGAAGGCTTTGTGATAGTGTTATCAGGCTAAGTGCATAGCAGGCC
* * *
99884770 TTTGTGTCAGTGTTATCAAGATAAGTGCCTAGCAGGCCTTTGTACCAG
66 CTTGTGTCAGTGTTATCAAGATAAGTGCCTAGCAAG-CTGTGTACCAG
* *
99884818 TGTTATCAGGCTAAGTGCCTAGTAGGCCTTTGTGATAGTGTTATCAGGCTAAGTGCCTAGCAGGC
1 TGTTATCAGGCTAAGTGCCTAGAAGG-CTTTGTGATAGTGTTATCAGGCTAAGTGCATAGCAGGC
* ** * * *
99884883 CCTTGTG-CTGCTGTT-TACGGGCTATGTGCCTAGCAAGCTGTGTGCCAG
65 CCTTGTGTCAG-TGTTAT-CAAGATAAGTGCCTAGCAAGCTGTGTACCAG
99884931 TGTT
1 TGTT
99884935 TAACAAGATT
Statistics
Matches: 96, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
113 39 0.41
114 57 0.59
ACGTcount: A:0.18, C:0.19, G:0.30, T:0.33
Consensus pattern (112 bp):
TGTTATCAGGCTAAGTGCCTAGAAGGCTTTGTGATAGTGTTATCAGGCTAAGTGCATAGCAGGCC
CTTGTGTCAGTGTTATCAAGATAAGTGCCTAGCAAGCTGTGTACCAG
Found at i:99906103 original size:13 final size:13
Alignment explanation
Indices: 99906074--99906150 Score: 93
Period size: 13 Copynumber: 5.9 Consensus size: 13
99906064 ACACTTAAAT
99906074 TTTTCCAAAA-CAC
1 TTTT-CAAAAGCAC
* *
99906087 TTCTCAAAAGTAC
1 TTTTCAAAAGCAC
*
99906100 TTCTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
99906113 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
99906126 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
99906139 TTTTCAAAAGCA
1 TTTTCAAAAGCA
99906151 ATGAAGAACT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
12 5 0.09
13 50 0.91
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.30
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:99906127 original size:39 final size:39
Alignment explanation
Indices: 99906074--99906150 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
99906064 ACACTTAAAT
*
99906074 TTTTCCAAAACACTTCTCAAAAGTACTTCTCAAAAGCAC
1 TTTTCCAAAACACTTCTCAAAAGCACTTCTCAAAAGCAC
* * * *
99906113 TTTTCCACAGCACTTTTCAAAAGCACTTTTCAAAAGCA
1 TTTTCCAAAACACTTCTCAAAAGCACTTCTCAAAAGCA
99906151 ATGAAGAACT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.30
Consensus pattern (39 bp):
TTTTCCAAAACACTTCTCAAAAGCACTTCTCAAAAGCAC
Found at i:99907189 original size:27 final size:27
Alignment explanation
Indices: 99907150--99907421 Score: 90
Period size: 27 Copynumber: 10.2 Consensus size: 27
99907140 GGTCGTTAAG
* *
99907150 ACCCCGGA-TTGTAAAATTCCTTAAAT
1 ACCCCTGATTTGTAAAATTCCTAAAAT
* * *
99907176 ACCCCTGGTTTGTAAAATT-ATCGAAAT
1 ACCCCTGATTTGTAAAATTCCT-AAAAT
*
99907203 ACCCCTGATTTGAAAAATTACC-AAAAT
1 ACCCCTGATTTGTAAAATT-CCTAAAAT
* * *
99907230 ACCACTAATTTGTAAAATTACC-GAAAT
1 ACCCCTGATTTGTAAAATT-CCTAAAAT
* * * ** *
99907257 ACCTACAG-TTTGGAAAATTATTGAAAT
1 ACC-CCTGATTTGTAAAATTCCTAAAAT
* *
99907284 A-CCTTGATTTGCAAAATTACC-AAAAT
1 ACCCCTGATTTGTAAAATT-CCTAAAAT
* *
99907310 A-CCCTTAGTTTGAAAAATTACC-AAAAT
1 ACCCCTGA-TTTGTAAAATT-CCTAAAAT
* *
99907337 A-CCCTCGATTTGGAAAATT-ATCAAAAT
1 ACCCCT-GATTTGTAAAATTCCT-AAAAT
* *
99907364 A-CCTTCGATTT-TAAAAATTACC-GAAAT
1 ACCCCT-GATTTGT-AAAATT-CCTAAAAT
* *
99907391 ACCCC-AATTTGGAAAATTACC-AAAAT
1 ACCCCTGATTTGTAAAATT-CCTAAAAT
99907417 ACCCC
1 ACCCC
99907422 GGGTTCATAA
Statistics
Matches: 191, Mismatches: 38, Indels: 34
0.73 0.14 0.13
Matches are distributed among these distances:
25 1 0.01
26 49 0.26
27 136 0.71
28 5 0.03
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (27 bp):
ACCCCTGATTTGTAAAATTCCTAAAAT
Found at i:99907231 original size:54 final size:54
Alignment explanation
Indices: 99907172--99907421 Score: 224
Period size: 54 Copynumber: 4.7 Consensus size: 54
99907162 AAAATTCCTT
* * * *
99907172 AAATACCCCTGGTTTGTAAAATTATCGAAATACCCCTGATTTGAAAAATTACCA
1 AAATACCCCTGATTTGGAAAATTACCAAAATACCCCTGATTTGAAAAATTACCA
* * * * * * * ***
99907226 AAATACCACTAATTTGTAAAATTACCGAAATACCTACAG-TTTGGAAAATTATTG
1 AAATACCCCTGATTTGGAAAATTACCAAAATACC-CCTGATTTGAAAAATTACCA
* * *
99907280 AAATA-CCTTGATTTGCAAAATTACCAAAATA-CCCTTAGTTTGAAAAATTACCA
1 AAATACCCCTGATTTGGAAAATTACCAAAATACCCCTGA-TTTGAAAAATTACCA
* * * *
99907333 AAATA-CCCTCGATTTGGAAAATTATCAAAATA-CCTTCGATTTTAAAAATTACCG
1 AAATACCCCT-GATTTGGAAAATTACCAAAATACCCCT-GATTTGAAAAATTACCA
*
99907387 AAATACCCC-AATTTGGAAAATTACCAAAATACCCC
1 AAATACCCCTGATTTGGAAAATTACCAAAATACCCC
99907422 GGGTTCATAA
Statistics
Matches: 157, Mismatches: 32, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
51 1 0.01
52 1 0.01
53 60 0.38
54 89 0.57
55 6 0.04
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (54 bp):
AAATACCCCTGATTTGGAAAATTACCAAAATACCCCTGATTTGAAAAATTACCA
Found at i:99907320 original size:53 final size:52
Alignment explanation
Indices: 99907211--99907419 Score: 220
Period size: 53 Copynumber: 3.9 Consensus size: 52
99907201 ATACCCCTGA
* * * * * *
99907211 TTTGAAAAATTACCAAAATACCACTAATTTGTAAAATTACCGAAATACCTACAG
1 TTTGAAAAATTACCGAAATACCTC-GATTTGGAAAATTACCAAAATACCT-TAG
* ** * *
99907265 TTTGGAAAATTATTGAAATACCTTGATTTGCAAAATTACCAAAATACCCTTAG
1 TTTGAAAAATTACCGAAATACCTCGATTTGGAAAATTACCAAAATA-CCTTAG
* * *
99907318 TTTGAAAAATTACCAAAATACCCTCGATTTGGAAAATTATCAAAATACCTTCG
1 TTTGAAAAATTACCGAAATA-CCTCGATTTGGAAAATTACCAAAATACCTTAG
* * *
99907371 ATTTTAAAAATTACCGAAATACCCCAATTTGGAAAATTACCAAAATACC
1 -TTTGAAAAATTACCGAAATACCTCGATTTGGAAAATTACCAAAATACC
99907420 CCGGGTTCAT
Statistics
Matches: 129, Mismatches: 23, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
53 67 0.52
54 62 0.48
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.30
Consensus pattern (52 bp):
TTTGAAAAATTACCGAAATACCTCGATTTGGAAAATTACCAAAATACCTTAG
Found at i:99907381 original size:107 final size:107
Alignment explanation
Indices: 99907184--99907421 Score: 275
Period size: 107 Copynumber: 2.2 Consensus size: 107
99907174 ATACCCCTGG
* * * *
99907184 TTTGTAAAATTATCGAAATACCCCTGATTTGAAAAATTACCAAAATACCACTAATTTGTAAAATT
1 TTTGCAAAATTACCAAAATACCCCTGATTTGAAAAATTACCAAAATACCACTAATTTGGAAAATT
* * ** ***
99907249 ACCGAAATACCTACAGTTTGGAAAATTATTGAAATACCTTGA
66 ACCAAAATACCTACAGTTTGAAAAATTACCGAAATACCCCAA
* *
99907291 TTTGCAAAATTACCAAAATA-CCCTTAGTTTGAAAAATTACCAAAATACC-CTCGATTTGGAAAA
1 TTTGCAAAATTACCAAAATACCCCTGA-TTTGAAAAATTACCAAAATACCACT-AATTTGGAAAA
* * *
99907354 TTATCAAAATACCTTC-GATTTTAAAAATTACCGAAATACCCCAA
64 TTACCAAAATACCTACAG-TTTGAAAAATTACCGAAATACCCCAA
*
99907398 TTTGGAAAATTACCAAAATACCCC
1 TTTGCAAAATTACCAAAATACCCC
99907422 GGGTTCATAA
Statistics
Matches: 110, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
106 8 0.07
107 99 0.90
108 3 0.03
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (107 bp):
TTTGCAAAATTACCAAAATACCCCTGATTTGAAAAATTACCAAAATACCACTAATTTGGAAAATT
ACCAAAATACCTACAGTTTGAAAAATTACCGAAATACCCCAA
Found at i:99907433 original size:54 final size:52
Alignment explanation
Indices: 99907184--99907448 Score: 194
Period size: 53 Copynumber: 4.9 Consensus size: 52
99907174 ATACCCCTGG
* * * * *
99907184 TTTGTAAAATTATCGAAATACCCCTGATTTGAAAAATTACCAAAATACCACT-AA
1 TTTGGAAAATTACCAAAATACCCC-GGTTT-AAAAATTACCGAAATACC-CTCAA
* * * * * ** **
99907238 TTTGTAAAATTACCGAAATACCTACAGTTTGGAAAATTATTGAAATA-CCTTGA
1 TTTGGAAAATTACCAAAATACC-CCGGTTT-AAAAATTACCGAAATACCCTCAA
* ** * *
99907291 TTTGCAAAATTACCAAAATACCCTTAGTTTGAAAAATTACCAAAATACCCTCGA
1 TTTGGAAAATTACCAAAATACCC-CGGTTT-AAAAATTACCGAAATACCCTCAA
* * *
99907345 TTTGGAAAATTATCAAAATACCTTCGATTTTAAAAATTACCGAAATACCC-CAA
1 TTTGGAAAATTACCAAAATACC-CCG-GTTTAAAAATTACCGAAATACCCTCAA
* *
99907398 TTTGGAAAATTACCAAAATACCCCGGGTTCATAAAATTATCGAAATACCCT
1 TTTGGAAAATTACCAAAATACCCC-GGTTTA-AAAATTACCGAAATACCCT
99907449 GGTAGTGTAA
Statistics
Matches: 171, Mismatches: 31, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
52 6 0.04
53 81 0.47
54 80 0.47
55 4 0.02
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (52 bp):
TTTGGAAAATTACCAAAATACCCCGGTTTAAAAATTACCGAAATACCCTCAA
Found at i:99907434 original size:53 final size:53
Alignment explanation
Indices: 99907184--99907448 Score: 203
Period size: 54 Copynumber: 4.9 Consensus size: 53
99907174 ATACCCCTGG
* * * * * *
99907184 TTTGTAAAATTATCGAAATACCCCTGATTTGAAAAATTACCAAAATACCACT-AA
1 TTTGGAAAATTACCAAAATACCCC-GGTTTCAAAAATTACCGAAATACC-CTCAA
* * * * ** ** **
99907238 TTTGTAAAATTACCGAAATACCTACAGTTTGGAAAATTATTGAAATA-CCTTGA
1 TTTGGAAAATTACCAAAATACC-CCGGTTTCAAAAATTACCGAAATACCCTCAA
* ** * * *
99907291 TTTGCAAAATTACCAAAATACCCTTAGTTTGAAAAATTACCAAAATACCCTCGA
1 TTTGGAAAATTACCAAAATACCC-CGGTTTCAAAAATTACCGAAATACCCTCAA
* * * *
99907345 TTTGGAAAATTATCAAAATACCTTCGATTTTAAAAATTACCGAAATACCC-CAA
1 TTTGGAAAATTACCAAAATACC-CCGGTTTCAAAAATTACCGAAATACCCTCAA
* *
99907398 TTTGGAAAATTACCAAAATACCCCGGGTTCATAAAATTATCGAAATACCCT
1 TTTGGAAAATTACCAAAATACCCCGGTTTCA-AAAATTACCGAAATACCCT
99907449 GGTAGTGTAA
Statistics
Matches: 171, Mismatches: 33, Indels: 14
0.78 0.15 0.06
Matches are distributed among these distances:
52 7 0.04
53 80 0.47
54 83 0.49
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (53 bp):
TTTGGAAAATTACCAAAATACCCCGGTTTCAAAAATTACCGAAATACCCTCAA
Found at i:99907434 original size:107 final size:106
Alignment explanation
Indices: 99907215--99907448 Score: 247
Period size: 107 Copynumber: 2.2 Consensus size: 106
99907205 CCCTGATTTG
* * * **
99907215 AAAAATTACCAAAATACCACTAATTTGTAAAATTACCGAAATACCTACAGTTTGGAAAATTATTG
1 AAAAATTACCAAAATACC-CTAATTTGGAAAATTACCAAAATACCTACAGTTTGAAAAATTACCG
*** * * *
99907280 AAATACCTTGATTTGCAAAATTACCAAAATACCCTTAGTTTG
65 AAATACCCCAATTTGCAAAATTACCAAAATACCCTCAGGTTC
* * * *
99907322 AAAAATTACCAAAATACCCTCGATTTGGAAAATTATCAAAATACCTTC-GATTTTAAAAATTACC
1 AAAAATTACCAAAATACCCT-AATTTGGAAAATTACCAAAATACCTACAG-TTTGAAAAATTACC
* *
99907386 GAAATACCCCAATTTGGAAAATTACCAAAATACCC-CGGGTTC
64 GAAATACCCCAATTTGCAAAATTACCAAAATACCCTCAGGTTC
* *
99907428 ATAAAATTATCGAAATACCCT
1 A-AAAATTACCAAAATACCCT
99907449 GGTAGTGTAA
Statistics
Matches: 105, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
106 7 0.07
107 98 0.93
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.29
Consensus pattern (106 bp):
AAAAATTACCAAAATACCCTAATTTGGAAAATTACCAAAATACCTACAGTTTGAAAAATTACCGA
AATACCCCAATTTGCAAAATTACCAAAATACCCTCAGGTTC
Found at i:99907461 original size:80 final size:78
Alignment explanation
Indices: 99907172--99907449 Score: 297
Period size: 80 Copynumber: 3.5 Consensus size: 78
99907162 AAAATTCCTT
* *
99907172 AAATACCCCTGGTTTGTAAAATTATCGAAATACCCCTGATTTGAAAAATTACCAAAATACCACTA
1 AAATACCCC-GGTTTGGAAAATTATCGAAATA-CCCTGATTTGTAAAATTACCAAAATACC-CTA
* *
99907237 ATTTGTAAAATTACCG
63 ATTTGAAAAATTACCA
* * * * * *
99907253 AAATACCTACAGTTTGGAAAATTATTGAAATACCTTGATTTGCAAAATTACCAAAATACCCTTAG
1 AAATACC-CCGGTTTGGAAAATTATCGAAATACCCTGATTTGTAAAATTACCAAAATACCC-TAA
99907318 TTTGAAAAATTACCA
64 TTTGAAAAATTACCA
* * * * *
99907333 AAATACCCTCGATTTGGAAAATTATCAAAATACCTTCGATTT-TAAAAATTACCGAAATACCCCA
1 AAATACCC-CGGTTTGGAAAATTATCGAAATACCCT-GATTTGT-AAAATTACCAAAATACCCTA
*
99907397 ATTTGGAAAATTACCA
63 ATTTGAAAAATTACCA
***
99907413 AAATACCCCGGGTTCATAAAATTATCGAAATACCCTG
1 AAATACCCC-GGTTTGGAAAATTATCGAAATACCCTG
99907450 GTAGTGTAAA
Statistics
Matches: 166, Mismatches: 25, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
79 3 0.02
80 114 0.69
81 48 0.29
82 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.29
Consensus pattern (78 bp):
AAATACCCCGGTTTGGAAAATTATCGAAATACCCTGATTTGTAAAATTACCAAAATACCCTAATT
TGAAAAATTACCA
Found at i:99907511 original size:27 final size:27
Alignment explanation
Indices: 99907441--99907545 Score: 106
Period size: 27 Copynumber: 3.9 Consensus size: 27
99907431 AAATTATCGA
* *
99907441 AATA-CCCTGGTAGTGTAAAATGACCTT
1 AATACCCCT-GTAGGGTAAAATGACCGT
* * *
99907468 GATACCCTTGT-GTGGTAAAATGACTGT
1 AATACCCCTGTAG-GGTAAAATGACCGT
*
99907495 AATGCCCCTGTAGGGTAAAATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* *
99907522 AATACCCCTGTATGGTAGAATGAC
1 AATACCCCTGTAGGGTAAAATGAC
99907546 GATTATATCC
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
26 1 0.02
27 58 0.92
28 4 0.06
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCGT
Found at i:99919105 original size:39 final size:39
Alignment explanation
Indices: 99918879--99919094 Score: 324
Period size: 39 Copynumber: 5.5 Consensus size: 39
99918869 ACAAAGCATG
99918879 CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAATACCAGCACGAATGCCTT
**
99918920 CGGGACTTAGCCCGGATATAACGCCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
* **
99918959 CGGGACTTAGCCCAGATATAGCACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
* *
99918998 CGGGACTTAGCCTGGATATAATACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
* *
99919037 CAGGACTTAGGCCGGATATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
*
99919076 CGGGACTTAGCCCGAATAT
1 CGGGACTTAGCCCGGATAT
99919095 TTTTCCAGCA
Statistics
Matches: 158, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 150 0.95
40 2 0.01
41 6 0.04
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
Found at i:99919130 original size:78 final size:80
Alignment explanation
Indices: 99918881--99919211 Score: 322
Period size: 78 Copynumber: 4.2 Consensus size: 80
99918871 AAAGCATGCG
**
99918881 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACGCCA
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATTCCA
* * *
99918946 GCACGAATGCCTTCG
66 GCACTAATGCCTGCA
* ** * *
99918961 GGAC-TT-AGCCCAGATATAGCACCAGCACGAATGCCTTCGGGACTTAGCCTGGATATAATACCA
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATTCCA
* *
99919024 GCACAAATGCCTTCA
66 GCACTAATGCCTGCA
* * **
99919039 GGAC-TT-AGGCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGAATATTTTTCCA
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATTCCA
*
99919102 GCACTTA-GCCTGC-
66 GCACTAATGCCTGCA
* * * * * * * *
99919115 GGACTTTAAGTCCGGATATATTTCCAGCA-TAAAGCCTGC-GGACTTCAAGTCCGGATATATTTC
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT--AGCCCGGATATAATTC
*
99919178 CAGCA-TAAAGCCTGC-
64 CAGCACTAATGCCTGCA
* *
99919193 GGACTTCAAGTCCGGATAT
1 GGACTTTAAGCCCGGATAT
99919212 TTTTCCAATA
Statistics
Matches: 215, Mismatches: 31, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
76 10 0.05
77 16 0.07
78 183 0.85
79 2 0.01
80 4 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (80 bp):
GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATTCCA
GCACTAATGCCTGCA
Found at i:99919132 original size:117 final size:117
Alignment explanation
Indices: 99918877--99919182 Score: 336
Period size: 117 Copynumber: 2.6 Consensus size: 117
99918867 CCACAAAGCA
* *
99918877 TGCGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAAC
1 TGCGGGACTTTAAG-CCGGATATAATACCAGCACAAATGCCTTC-GGACTTAGCCCGGATATAAT
*
99918942 GCCAGCACGAATGCCTTCGGGACTTAGCCCAGATATAGCACCAGCACGAATGCC
64 ACCAGCACGAATGCCTTCGGGACTTAGCCCAGATATAGCACCAGCACGAATGCC
* *
99918996 TTCGGGAC-TT-AGCCTGGATATAATACCAGCACAAATGCCTTCAGGACTTAGGCCGGATATAAT
1 TGCGGGACTTTAAGCC-GGATATAATACCAGCACAAATGCCTTC-GGACTTAGCCCGGATATAAT
**** **
99919059 ACCAGCACGAATGCCTTCGGGACTTAGCCC-GAATATTTTTCCAGCACTTA-GCC
64 ACCAGCACGAATGCCTTCGGGACTTAGCCCAG-ATATAGCACCAGCACGAATGCC
* * * * * *
99919112 TGC-GGACTTTAAGTCCGGATATATTTCCAGCATAAA-GCCTGCGGACTTCAAGTCCGGATATAT
1 TGCGGGACTTTAAG-CCGGATATAATACCAGCACAAATGCCTTCGGACTT--AGCCCGGATATAA
*
99919175 TTCCAGCA
63 TACCAGCA
99919183 TAAAGCCTGC
Statistics
Matches: 160, Mismatches: 20, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
115 10 0.06
116 15 0.09
117 124 0.77
118 4 0.03
119 7 0.04
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (117 bp):
TGCGGGACTTTAAGCCGGATATAATACCAGCACAAATGCCTTCGGACTTAGCCCGGATATAATAC
CAGCACGAATGCCTTCGGGACTTAGCCCAGATATAGCACCAGCACGAATGCC
Found at i:99919139 original size:39 final size:39
Alignment explanation
Indices: 99919091--99919218 Score: 204
Period size: 39 Copynumber: 3.3 Consensus size: 39
99919081 CTTAGCCCGA
* * *
99919091 ATATTTTTCCAGCACT-TAGCCTGCGGACTTTAAGTCCGG
1 ATATATTTCCAGCA-TAAAGCCTGCGGACTTCAAGTCCGG
99919130 ATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCGG
1 ATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCGG
99919169 ATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCGG
1 ATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCGG
*
99919208 ATATTTTTCCA
1 ATATATTTCCA
99919219 ATACCATGCA
Statistics
Matches: 84, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
38 1 0.01
39 83 0.99
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (39 bp):
ATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCCGG
Found at i:99924118 original size:40 final size:40
Alignment explanation
Indices: 99924060--99924378 Score: 476
Period size: 40 Copynumber: 8.0 Consensus size: 40
99924050 GAATACACAT
* * * * *
99924060 CACCAGCATGATTTCTCTTCGGGACCTAGCCTGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
99924100 CACCAGCACGAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
99924140 CTCTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
99924180 CTCTAGCACGAATGCTTTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
99924220 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
99924260 CACCAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
99924300 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
99924340 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
99924379 TAACTCTCAA
Statistics
Matches: 254, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 254 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:99927677 original size:28 final size:28
Alignment explanation
Indices: 99927645--99927743 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
99927635 GCAATAAGCC
*
99927645 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
99927673 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
99927701 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
99927730 CGCACACTTAGTGC
1 CGCACACTTAGTGC
99927744 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:99935393 original size:28 final size:27
Alignment explanation
Indices: 99935317--99935394 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 27
99935307 GCAATAAGCC
* *
99935317 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTT-ATAATCAAACT
99935345 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCT-TATAATCAAACT
*
99935373 TGCACACTTAGTGCTGTATAAT
1 CGCACACTTAGTGCT-TATAAT
99935395 TTGAACCCGC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 44 0.98
29 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (27 bp):
CGCACACTTAGTGCTTATAATCAAACT
Found at i:99939724 original size:2 final size:2
Alignment explanation
Indices: 99939717--99939741 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
99939707 AGATACCTTC
99939717 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
99939742 GTGCATAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:99944935 original size:39 final size:39
Alignment explanation
Indices: 99944709--99944924 Score: 288
Period size: 39 Copynumber: 5.5 Consensus size: 39
99944699 ACAAAGCATG
*
99944709 CGGGACTTTAAGCCCGAATATAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAATACCAGCACGAATGCCTT
* * **
99944750 CGGGACTTAGCCCAGATACAACGCCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
** *
99944789 CGGGACTTAGCCCGGATATAGCACCAGCATGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
* * * *
99944828 CGGGACTTCGCCTGGATATAATACCAGAACGAATTCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
* *
99944867 CAGGACTTAGGCCGGATATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
99944906 CGGGACTTAGCCCGGATAT
1 CGGGACTTAGCCCGGATAT
99944925 TTTTCCAGCA
Statistics
Matches: 150, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 142 0.95
40 2 0.01
41 6 0.04
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
Found at i:99944960 original size:39 final size:39
Alignment explanation
Indices: 99944917--99945046 Score: 185
Period size: 39 Copynumber: 3.4 Consensus size: 39
99944907 GGGACTTAGC
* * *
99944917 CCGGATATTTTTCCAGCACT-TAGCCTGCGGACTTTAAGT
1 CCGGATATATTTCCAGCA-TAAAGCCTGCGGACTTCAAGT
99944956 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
1 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
99944995 CCGGATATATTTCCAGCATAAAGCCTGC--ACTTCAAGT
1 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
* *
99945032 CCGAATATTTTTCCA
1 CCGGATATATTTCCA
99945047 ATACCATGCA
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
37 22 0.26
38 1 0.01
39 62 0.73
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
Found at i:99944972 original size:78 final size:80
Alignment explanation
Indices: 99944711--99945012 Score: 269
Period size: 78 Copynumber: 3.9 Consensus size: 80
99944701 AAAGCATGCG
* * * **
99944711 GGACTTTAAGCCCGAATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCAGATACAACGCCA
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATTCCA
* *
99944776 GCACGAATGCCTTCG
66 GCACGAATGCCTGCA
** * * * *
99944791 GGAC-TT-AGCCCGGATATAGCACCAGCATGAATGCCTTCGGGACTTCGCCTGGATATAATACCA
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATTCCA
* * *
99944854 GAACGAATTCCTTCA
66 GCACGAATGCCTGCA
* **
99944869 GGAC-TT-AGGCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATTTTTCCA
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATTCCA
**
99944932 GCACTTA-GCCTGC-
66 GCACGAATGCCTGCA
* * * * * * * *
99944945 GGACTTTAAGTCCGGATATATTTCCAGCA-TAAAGCCTGC-GGACTTCAAGTCCGGATATATTTC
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT--AGCCCGGATATAATTC
99945008 CAGCA
64 CAGCA
99945013 TAAAGCCTGC
Statistics
Matches: 183, Mismatches: 35, Indels: 10
0.80 0.15 0.04
Matches are distributed among these distances:
76 10 0.05
77 13 0.07
78 154 0.84
79 2 0.01
80 4 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATTCCA
GCACGAATGCCTGCA
Found at i:99945706 original size:2 final size:2
Alignment explanation
Indices: 99945699--99945725 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
99945689 AGATACCTTC
99945699 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
99945726 GTGCATAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:99948670 original size:10 final size:10
Alignment explanation
Indices: 99948655--99948681 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
99948645 CGTAAGTTTA
99948655 GTGTACATAC
1 GTGTACATAC
99948665 GTGTACATAC
1 GTGTACATAC
99948675 GTGTACA
1 GTGTACA
99948682 ACTTGTAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (10 bp):
GTGTACATAC
Found at i:99961931 original size:23 final size:23
Alignment explanation
Indices: 99961902--99961982 Score: 128
Period size: 23 Copynumber: 3.5 Consensus size: 23
99961892 CATCTCGTAA
*
99961902 GAGCTTACTGTTTCAGCTCAT-T
1 GAGCTTACTGTTTTAGCTCATAT
99961924 GGAGCTTACTGTTTTAGCTCATAT
1 -GAGCTTACTGTTTTAGCTCATAT
99961948 GAGCTTACTGTTTTAGCTCATAT
1 GAGCTTACTGTTTTAGCTCATAT
*
99961971 GAGCGTACTGTT
1 GAGCTTACTGTT
99961983 CAACTCGATA
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
23 54 0.98
24 1 0.02
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.41
Consensus pattern (23 bp):
GAGCTTACTGTTTTAGCTCATAT
Found at i:99971839 original size:40 final size:40
Alignment explanation
Indices: 99971780--99972005 Score: 312
Period size: 40 Copynumber: 5.7 Consensus size: 40
99971770 CATTGGAATG
*
99971780 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGTAATT
99971820 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGTAATT
99971860 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGTAATT
* * **
99971900 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAGTAATT
* * * * **
99971940 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGTAATT
* *
99971980 AAATCCGGGTTAAGACCCG-AGGCAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
99972006 CGTGCGAATC
Statistics
Matches: 171, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 9 0.05
40 160 0.94
41 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGTAATT
Found at i:99979805 original size:46 final size:45
Alignment explanation
Indices: 99979755--99979930 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
99979745 TGGTTGAGCA
*
99979755 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
99979801 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
99979848 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
99979894 CCCGAGCTCTTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
99979931 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
44 3 0.03
45 1 0.01
46 66 0.62
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:99979911 original size:93 final size:93
Alignment explanation
Indices: 99979752--99979922 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
99979742 GGATGGTTGA
* * * *
99979752 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
99979817 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
99979845 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTATGGATACGAACGCCCGAGCTCTTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
99979910 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
99979923 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:99982900 original size:15 final size:15
Alignment explanation
Indices: 99982880--99982935 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
99982870 GTATCTTGGG
99982880 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
99982895 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
99982910 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
99982925 TTTCTTTATTC
1 TTTCTTTATTC
99982936 AGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:99985387 original size:46 final size:45
Alignment explanation
Indices: 99985337--99985512 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
99985327 TGGTTGAGCA
*
99985337 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
99985383 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
99985430 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
99985476 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
99985513 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:99985493 original size:93 final size:93
Alignment explanation
Indices: 99985334--99985504 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
99985324 GGATGGTTGA
* * *
99985334 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
99985399 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
99985427 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
99985492 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
99985505 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:99997174 original size:30 final size:30
Alignment explanation
Indices: 99997140--99997279 Score: 108
Period size: 30 Copynumber: 4.7 Consensus size: 30
99997130 TAACCAAAGT
*
99997140 TATCCTTTTTCATAGTTCGATAGTCG-AAGC
1 TATCCCTTTTCATAGTTCGATAGTCGTAA-C
* * * *
99997170 TATCCCTTTTCATAATTTGATGGTCGTCAC
1 TATCCCTTTTCATAGTTCGATAGTCGTAAC
* * * *
99997200 CATCCCTTTTCATTAG-TCGATGGTTGTCAC
1 TATCCCTTTTCA-TAGTTCGATAGTCGTAAC
* * *
99997230 CATCCCTTTTCATAATT-GATAGCCG-AAGC
1 TATCCCTTTTCATAGTTCGATAGTCGTAA-C
*
99997259 TATCCCTTTTCATAGATCGAT
1 TATCCCTTTTCATAGTTCGAT
99997280 GATCGTCGTT
Statistics
Matches: 88, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
28 1 0.01
29 22 0.25
30 62 0.70
31 3 0.03
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.39
Consensus pattern (30 bp):
TATCCCTTTTCATAGTTCGATAGTCGTAAC
Found at i:99999299 original size:15 final size:14
Alignment explanation
Indices: 99999276--99999305 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
99999266 TTTCGATACC
99999276 AAAAAAAAAAAAGA
1 AAAAAAAAAAAAGA
99999290 AAAAAGAAAAAAAGA
1 AAAAA-AAAAAAAGA
99999305 A
1 A
99999306 GAAGGTACGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAGA
Found at i:100002210 original size:24 final size:24
Alignment explanation
Indices: 100002178--100002227 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
100002168 GAGACAAAGA
100002178 GATGAAAATTTTCAATGGTTAGGT
1 GATGAAAATTTTCAATGGTTAGGT
100002202 GATGAAAATTTTCAATGGTTAGGT
1 GATGAAAATTTTCAATGGTTAGGT
100002226 GA
1 GA
100002228 GTTTGGTGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (24 bp):
GATGAAAATTTTCAATGGTTAGGT
Found at i:100003363 original size:50 final size:50
Alignment explanation
Indices: 100003288--100003525 Score: 238
Period size: 50 Copynumber: 4.9 Consensus size: 50
100003278 TGATGCTAGG
* *
100003288 GAGATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACCTC
1 GAGATGTGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* * *
100003338 GAGATGTGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATC-AGCTT
1 GAGATGTGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* * * *
100003387 GATATGT--G-TC-AGTGTAACACCATGTCTGGGACATGGCATCGGCCTC
1 GAGATGTGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* * *** * * *
100003433 AATATACAAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATTGACTTC
1 GAGATGTGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* * * *
100003483 -A-ATGTGTGAGCCACTGTAAGACCATGTCCGGGACATGGCATCG
1 GAGATGTGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
100003526 GCACCTTACC
Statistics
Matches: 155, Mismatches: 28, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
45 28 0.18
46 7 0.05
47 1 0.01
48 34 0.22
49 10 0.06
50 75 0.48
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (50 bp):
GAGATGTGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
Found at i:100003467 original size:95 final size:95
Alignment explanation
Indices: 100003302--100003527 Score: 267
Period size: 95 Copynumber: 2.3 Consensus size: 95
100003292 TATGAGAGCT
* * * ***
100003302 AGTGTAAGACCATGTTTGGGACATGGCATCGACCTCGAGATGTGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAAGATACAAGAGCTAGTGTAAGACCATGT
* *
100003367 TTGGGACATGGCATCAG-CTTGATATGTGT-C
66 CTGGGACATGGCAT-AGACTTCA-ATGTGTGC
* * *
100003397 AGTGTAACACCATGTCTGGGACATGGCATCGGCCTCAATATACAAGAGTTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAAGATACAAGAGCTAGTGTAAGACCATGT
*
100003462 CTGGGACATGGCATTGACTTCAATGTGTGAGCC
66 CTGGGACATGGCATAGACTTCAATGTGT--G-C
* *
100003495 ACTGTAAGACCATGTCCGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
100003528 ACCTTACCCT
Statistics
Matches: 111, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
94 7 0.06
95 73 0.66
98 31 0.28
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAAGATACAAGAGCTAGTGTAAGACCATGT
CTGGGACATGGCATAGACTTCAATGTGTGC
Found at i:100006216 original size:73 final size:73
Alignment explanation
Indices: 100006139--100006421 Score: 283
Period size: 73 Copynumber: 3.9 Consensus size: 73
100006129 AAGGTTGACA
* * *
100006139 TTTAAAAAAGGTTGGGATAAACTTGTCTAA-GACATCCATAAAAAGGTTGGGATAAACCTTGTCT
1 TTTAAAAAAGATTGGGATAAACTTGTCTAAGGA-ATCCTTAAAAAGGTTGGGATAGACCTTGTCT
100006203 AAGGCAACC
65 AAGGCAACC
* * * * * *
100006212 TTTAAAAAAGATTGGGATAGA-TCCGTCTAAGGAATCCTTAAAAAGGTTGGGTTAGACTTTATGT
1 TTTAAAAAAGATTGGGATAAACT-TGTCTAAGGAATCCTTAAAAAGGTTGGGATAGACCTTGTCT
100006276 AAGGCAACC
65 AAGGCAACC
* * * * *
100006285 TTTAAAAAAGCTTGGGATAGACTTGTCTAAGGAAAT-CTTAAAAAGGTTGAGATAGACC-CGTTT
1 TTTAAAAAAGATTGGGATAAACTTGTCTAAGG-AATCCTTAAAAAGGTTGGGATAGACCTTGTCT
100006348 AAGGCAA-C
65 AAGGCAACC
** *** * ** *
100006356 TTT-AAAAATTTTGGGATAAACCCATCTAAGGTATCCTTAAAAAATTTGGGATAGA-CATGTCTA
1 TTTAAAAAAGATTGGGATAAACTTGTCTAAGGAATCCTTAAAAAGGTTGGGATAGACCTTGTCTA
100006419 AGG
66 AGG
100006422 TAAATTTTTT
Statistics
Matches: 175, Mismatches: 29, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
69 3 0.02
70 46 0.26
71 4 0.02
72 10 0.06
73 106 0.61
74 6 0.03
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.28
Consensus pattern (73 bp):
TTTAAAAAAGATTGGGATAAACTTGTCTAAGGAATCCTTAAAAAGGTTGGGATAGACCTTGTCTA
AGGCAACC
Found at i:100006423 original size:35 final size:35
Alignment explanation
Indices: 100006140--100006421 Score: 199
Period size: 35 Copynumber: 7.9 Consensus size: 35
100006130 AGGTTGACAT
* *
100006140 TTAAAAAAGGTTGGGATAAACTTGTCTAAGACATCC
1 TTAAAAAA-GTTGGGATAGACTTGTCTAAGGCATCC
* * * *
100006176 ATAAAAAGGTTGGGATAAACCTTGTCTAAGGCAACC
1 TTAAAAAAGTTGGGATAGA-CTTGTCTAAGGCATCC
* *
100006212 TTTAAAAAAGATTGGGATAGA-TCCGTCTAAGGAATCC
1 -TTAAAAAAG-TTGGGATAGACT-TGTCTAAGGCATCC
* * * * *
100006249 TTAAAAAGGTTGGGTTAGACTTTATGTAAGGCAACC
1 TTAAAAAAGTTGGGATAGAC-TTGTCTAAGGCATCC
*
100006285 TTTAAAAAAGCTTGGGATAGACTTGTCTAAGGAAAT-C
1 -TTAAAAAAG-TTGGGATAGACTTGTCTAAGG-CATCC
* * ** * * *
100006322 TTAAAAAGGTTGAGATAGACCCGTTTAAGGCAACT
1 TTAAAAAAGTTGGGATAGACTTGTCTAAGGCATCC
** * *** *
100006357 TTAAAAATTTTGGGATAAACCCATCTAAGGTATCC
1 TTAAAAAAGTTGGGATAGACTTGTCTAAGGCATCC
* *
100006392 TTAAAAAATTTGGGATAGACATGTCTAAGG
1 TTAAAAAAGTTGGGATAGACTTGTCTAAGG
100006422 TAAATTTTTT
Statistics
Matches: 191, Mismatches: 45, Indels: 21
0.74 0.18 0.08
Matches are distributed among these distances:
34 1 0.01
35 88 0.46
36 46 0.24
37 36 0.19
38 20 0.10
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (35 bp):
TTAAAAAAGTTGGGATAGACTTGTCTAAGGCATCC
Found at i:100013869 original size:28 final size:28
Alignment explanation
Indices: 100013837--100013906 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
100013827 ATAGTAAGTC
100013837 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
100013865 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
100013893 CGCACACTTAGTGC
1 CGCACACTTAGTGC
100013907 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:100021668 original size:28 final size:28
Alignment explanation
Indices: 100021636--100021705 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
100021626 ATAGTAAGTC
100021636 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
100021664 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
100021692 CGCACACTTAGTGC
1 CGCACACTTAGTGC
100021706 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:100040685 original size:21 final size:23
Alignment explanation
Indices: 100040652--100040695 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 23
100040642 TAAATGATTG
*
100040652 ATGCGATTGAGTTACAATATGTA
1 ATGCGATTGAGTTACAAAATGTA
*
100040675 ATGC-ATT-AGTTAGAAAATGTA
1 ATGCGATTGAGTTACAAAATGTA
100040696 TGTCATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 12 0.63
22 3 0.16
23 4 0.21
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.34
Consensus pattern (23 bp):
ATGCGATTGAGTTACAAAATGTA
Found at i:100041303 original size:41 final size:40
Alignment explanation
Indices: 100041258--100041462 Score: 156
Period size: 40 Copynumber: 5.2 Consensus size: 40
100041248 TATTCGAATG
* *
100041258 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACT
* * * *
100041299 ATATCCGGACTAAGAT-CCGAAGGCCTTTGTACGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACT
* * * *
100041339 A-ATCCCGGGCTAAG-CCCGAA-GCA-TGGGGTGAGTTACT
1 ATAT-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * *
100041376 AAATCCGGG-TTAGGCCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACT
* * **
100041415 ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGT-AGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CT
100041455 ATATCCGG
1 ATATCCGG
100041463 TTAAACTCCG
Statistics
Matches: 129, Mismatches: 24, Indels: 23
0.73 0.14 0.13
Matches are distributed among these distances:
36 3 0.02
37 22 0.17
38 7 0.05
39 23 0.18
40 46 0.36
41 27 0.21
42 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:100048943 original size:41 final size:39
Alignment explanation
Indices: 100048882--100049067 Score: 139
Period size: 41 Copynumber: 4.7 Consensus size: 39
100048872 TATTCGAATG
*
100048882 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGT-CCGAAGGCCTTTGTGC-AAGTGACT
* * *
100048923 ATATCCGGACTAAGATCCGAAGGCCTTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCGAAGGCCTTTGTGCAAGTGACT
* * * *
100048963 A-ATCCGGGCTAAGCCCGAAGGCATGGTGTG--AGTTACT
1 ATATCCGGGCTAAGTCCGAAGGCCT-TTGTGCAAGTGACT
* * * *
100049000 AAATCCGGG-TTAGTCCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGT-CCGAAGGCCTTTGTGCAAG-TGACT
* * *
100049039 ATAACCGGGCTATGTCCCGAAGGCATTTG
1 ATATCCGGGCTAAGT-CCGAAGGCCTTTG
100049068 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 16, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
37 15 0.12
38 26 0.21
39 26 0.21
40 25 0.21
41 28 0.23
42 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCCTTTGTGCAAGTGACT
Found at i:100049005 original size:38 final size:39
Alignment explanation
Indices: 100048884--100049065 Score: 176
Period size: 39 Copynumber: 4.6 Consensus size: 39
100048874 TTCGAATGAT
* * * *
100048884 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGC-ATTGTGC-GAGTTACTAA
* *
100048925 ATCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGTTACT-A
1 ATCCGGGCTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAA
* *
100048964 ATCCGGGCTAAG-CCCGAAGGCATGGTGTGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAA
* *
100049002 ATCCGGG-TTAGTCCCGAAGGCATTTGTGCGAGTTGCTATA
1 ATCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTA-A
*
100049042 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATT
100049066 TGAACGAGTA
Statistics
Matches: 119, Mismatches: 14, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
37 16 0.13
38 25 0.21
39 30 0.25
40 21 0.18
41 25 0.21
42 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAA
Found at i:100049062 original size:40 final size:40
Alignment explanation
Indices: 100048886--100049081 Score: 172
Period size: 40 Copynumber: 5.0 Consensus size: 40
100048876 CGAATGATAT
* * *
100048886 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAG-TGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTG-CTATAA
* * * *
100048927 CCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGTTACTA-AT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTGCTATAA
* * *
100048966 CCGGGCTAAG-CCCGAAGGCA-TGGTGTGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
*
100049003 TCCGGG-TTAGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
* ** *
100049043 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATA
100049082 TCGGTTAAAC
Statistics
Matches: 129, Mismatches: 18, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
37 17 0.13
38 23 0.18
39 28 0.22
40 35 0.27
41 25 0.19
42 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
Found at i:100051595 original size:43 final size:44
Alignment explanation
Indices: 100051523--100051649 Score: 105
Period size: 43 Copynumber: 2.9 Consensus size: 44
100051513 TGTTGTGGCA
* * *
100051523 TTTGTAGCTAGAATCGCCGCAAAAGATCATGATCTTTAGCGGCG
1 TTTGTAGCTAAAAACGCCGCAAAAGATCATGATCTATAGCGGCG
* * * *
100051567 TTTGTAG-TAAAAACGCCGCTAAATATCATGTTCTATAGCAGCG
1 TTTGTAGCTAAAAACGCCGCAAAAGATCATGATCTATAGCGGCG
* * * * ** * *
100051610 ATTGCA-ATAAAAGCGCCGTTAAGGATCATGTTCTATAGCG
1 TTTGTAGCTAAAAACGCCGCAAAAGATCATGATCTATAGCG
100051650 ATGTTTTCCC
Statistics
Matches: 68, Mismatches: 14, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
43 61 0.90
44 7 0.10
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (44 bp):
TTTGTAGCTAAAAACGCCGCAAAAGATCATGATCTATAGCGGCG
Found at i:100053873 original size:48 final size:48
Alignment explanation
Indices: 100053818--100053975 Score: 212
Period size: 48 Copynumber: 3.3 Consensus size: 48
100053808 TAAAAAAATG
* *
100053818 TCTGGGACATGGCATCAGCATCATTATGAGATCCCGTATAAGACCATG
1 TCTGGGACATGGCATCAGCATCAGTATGAGATCCCGTATAAGACCATA
* *
100053866 TCAGGGACATGGCATCGGCATC-GTATGAGATCCCGTATAAGACCATA
1 TCTGGGACATGGCATCAGCATCAGTATGAGATCCCGTATAAGACCATA
* * * *
100053913 TCTGGGATATGGCATCTGCATCGAGT-TGAGATCCCATGTAAGACCATA
1 TCTGGGACATGGCATCAGCATC-AGTATGAGATCCCGTATAAGACCATA
*
100053961 TCTGGGATATGGCAT
1 TCTGGGACATGGCAT
100053976 TGGTATCGTA
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
47 42 0.42
48 55 0.56
49 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (48 bp):
TCTGGGACATGGCATCAGCATCAGTATGAGATCCCGTATAAGACCATA
Found at i:100066405 original size:29 final size:29
Alignment explanation
Indices: 100066363--100066421 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
100066353 TAGAAGGTAG
100066363 AAAAACTATTTCTAGAAGGTAAAAAAACT
1 AAAAACTATTTCTAGAAGGTAAAAAAACT
* *
100066392 AAAAATTATTTCTAGAAGGTAGAAAAACT
1 AAAAACTATTTCTAGAAGGTAAAAAAACT
100066421 A
1 A
100066422 TCCAATTCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.54, C:0.08, G:0.12, T:0.25
Consensus pattern (29 bp):
AAAAACTATTTCTAGAAGGTAAAAAAACT
Found at i:100070112 original size:47 final size:48
Alignment explanation
Indices: 100070001--100070273 Score: 194
Period size: 49 Copynumber: 5.8 Consensus size: 48
100069991 GTTATGTGAG
* *
100070001 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GATGAG-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTAATGAT-AGT
* * * * *
100070049 GGCTAGTATAA-AACGTGTCTGGGACAT-GCATCGGCCTCAATGATAGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-AATGATAGT
* * *
100070096 AGCCAGTGTAAGA-CGTGTCTGGGACAT-GCATCGG-CTAA-GCTTCGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAATG-ATAGT
* * * * * *
100070141 -GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCAGCGCTTATACACAAG-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTAAT-GA-TAGT
* * *
100070188 AGCTAGTGTATGACCATGTCTGGGACATGGCATCGGCCTCGATGA-AGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-AATGATAG-T
*
100070237 TGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
100070274 AACTTAACCC
Statistics
Matches: 180, Mismatches: 29, Indels: 31
0.75 0.12 0.13
Matches are distributed among these distances:
44 30 0.17
45 6 0.03
46 16 0.09
47 48 0.27
48 21 0.12
49 50 0.28
50 9 0.05
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.24
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAATGATAGT
Found at i:100070166 original size:91 final size:94
Alignment explanation
Indices: 100070001--100070224 Score: 233
Period size: 91 Copynumber: 2.4 Consensus size: 94
100069991 GTTATGTGAG
* *
100070001 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGGGCTAGTATAAAACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TAAGATGAGGGCTAGTATAAAACATG
100070066 TCTGGGACATGCATCGGCCTCAATGATAGT
65 TCTGGGACATGCATCGGCCTCAATGATAGT
* * ** * * *
100070096 AGCCAGTGTAAGA-CGTGTCTGGGACAT-GCATCGGC-TAAGCTTCGTGCTAGTGTAAGACATGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAAGATGAGGGCTAGTATAAAACATGT
* * * * *
100070158 TTGGGACATGCATCAGCGCT-TATACACAAG-
66 CTGGGACATGCATCGGC-CTCAAT-GA-TAGT
* *
100070188 AGCTAGTGTATGACCATGTCTGGGACATGGCATCGGC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
100070225 CTCGATGAAG
Statistics
Matches: 107, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
91 36 0.34
92 14 0.13
93 23 0.21
94 21 0.20
95 13 0.12
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAAGATGAGGGCTAGTATAAAACATGT
CTGGGACATGCATCGGCCTCAATGATAGT
Found at i:100072045 original size:23 final size:23
Alignment explanation
Indices: 100071990--100072130 Score: 212
Period size: 23 Copynumber: 6.0 Consensus size: 23
100071980 TGCTTTATCA
*
100071990 TATAACTGGGGCCT-AGCCTCTTT
1 TATAACTGGGGCATAAGCC-CTTT
*
100072013 TAATAACTGGGGCAAAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
100072037 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
100072060 GATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
100072083 TGATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
*
100072107 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
100072130 T
1 T
100072131 TCACTTCCTC
Statistics
Matches: 108, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
23 66 0.61
24 38 0.35
25 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:100072089 original size:47 final size:46
Alignment explanation
Indices: 100071990--100072130 Score: 221
Period size: 47 Copynumber: 3.0 Consensus size: 46
100071980 TGCTTTATCA
* *
100071990 TATAACTGGGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTT
1 TATAACTGGGGCATAAGCC-C-TTTAATAACTGGGGCATAAGCCCTTT
*
100072037 TATAACTGGGGCATAAGCCCTTTGATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
100072083 TGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
100072130 T
1 T
100072131 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
46 25 0.28
47 59 0.67
48 4 0.05
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (46 bp):
TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
Found at i:100072104 original size:70 final size:70
Alignment explanation
Indices: 100071991--100072129 Score: 226
Period size: 70 Copynumber: 2.0 Consensus size: 70
100071981 GCTTTATCAT
* *
100071991 ATAACTGGGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTATAACTGGGGCATAAGCC
1 ATAACTGGGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAGCC
100072056 CTTTG
66 CTTTG
* *
100072061 ATAACTGGGGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGC
1 ATAACTGGGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAGC
100072125 CCTTT
65 CCTTT
100072130 TTCACTTCCT
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
70 60 0.94
71 4 0.06
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (70 bp):
ATAACTGGGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAGCC
CTTTG
Found at i:100072204 original size:20 final size:20
Alignment explanation
Indices: 100072176--100072236 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
100072166 GCATTTATGA
*
100072176 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
100072196 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
100072216 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
100072236 A
1 A
100072237 TGTCATGCAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:100072211 original size:11 final size:11
Alignment explanation
Indices: 100072181--100072235 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
100072171 TATGAACATC
100072181 TCATGTGCATA
1 TCATGTGCATA
*
100072192 TCA--TACATA
1 TCATGTGCATA
100072201 TCATGTGCATA
1 TCATGTGCATA
*
100072212 TCA--TACATA
1 TCATGTGCATA
100072221 TCATGTGCATA
1 TCATGTGCATA
100072232 TCAT
1 TCAT
100072236 ATGTCATGCA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 16 0.44
11 20 0.56
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Done.