Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 320 of 433
Found at i:100072319 original size:25 final size:25
Alignment explanation
Indices: 100072291--100072338 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
100072281 TCATATAAAC
* * *
100072291 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
100072316 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
100072339 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:100073749 original size:26 final size:27
Alignment explanation
Indices: 100073569--100074029 Score: 548
Period size: 27 Copynumber: 17.6 Consensus size: 27
100073559 AGGGTATTTT
*
100073569 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
100073596 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
100073623 AGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
100073650 -GATAATTATGTAAATCG-GGGTAAAA-
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* *
100073675 TGTAATTATGTAAAT--AGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
100073700 -GTAATTC-ATAAATCGAGGGT-AAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
100073724 AGTAATTCTGTAAA-CTGA-GGTAAAAT
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
100073750 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
**
100073777 -GTAATT-TACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
100073802 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
100073829 AGTAATT-TGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
100073855 A-TAATTCTGTAAA-CTGAGGGT-AAA-
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
100073879 AGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
100073906 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
100073933 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
100073960 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
100073987 AGTAATTCT-TAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
100074013 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
100074030 GGAGTACTTT
Statistics
Matches: 383, Mismatches: 26, Indels: 50
0.83 0.06 0.11
Matches are distributed among these distances:
23 5 0.01
24 18 0.05
25 74 0.19
26 103 0.27
27 181 0.47
28 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:100073771 original size:52 final size:52
Alignment explanation
Indices: 100073569--100074029 Score: 527
Period size: 52 Copynumber: 8.8 Consensus size: 52
100073559 AGGGTATTTT
* * *
100073569 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAA
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT-AAA
* *
100073622 CAGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCG-GGGTAAA
1 -AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
* *
100073674 ATGTAATTATGTAAAT--AGGGTAAAAC-GTAATTC-ATAAATCGAGGGTAAA
1 A-GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
*
100073723 TAGTAATTCTGTAAA-CTGA-GGTAAAATGGTAATTCTGTAAATCGAGGGTAAA
1 -AGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
** *
100073775 ACGTAATT-TACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
1 A-GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT-AAA
* *
100073828 CAGTAATT-TGTAAATCAAGGGTAAAAC-ATAATTCTGTAAA-CTGAGGGTAAA
1 -AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAA
**
100073879 AGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAA
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAA
* **
100073931 ACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAA
1 A--GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT-AAA
100073986 CAGTAATTCT-TAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCG
1 -AGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCG
100074030 GGAGTACTTT
Statistics
Matches: 353, Mismatches: 32, Indels: 45
0.82 0.07 0.10
Matches are distributed among these distances:
48 7 0.02
49 24 0.07
50 25 0.07
51 37 0.10
52 108 0.31
53 58 0.16
54 89 0.25
55 4 0.01
56 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (52 bp):
AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA
Found at i:100074073 original size:80 final size:81
Alignment explanation
Indices: 100073570--100074062 Score: 438
Period size: 77 Copynumber: 6.3 Consensus size: 81
100073560 GGGTATTTTA
** * * *
100073570 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAA-TCAAGGGTAAAACAGTAATTCTGT
1 GTAATTTTACAAATCGAGGGCAAAACAGTAATTCTGTAAACT-GAGGGTAAAACGGTAATTCTGT
100073634 AAATCGAGGGTAAAACG
65 AAATCGAGGGTAAAACG
* * ** * * * *
100073651 ATAATTATGTAAATCG-GGGTAAAA-TGTAATTATGTAAA-T-AGGGTAAAAC-GTAATTC-ATA
1 GTAATTTTACAAATCGAGGGCAAAACAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
100073710 AATCGAGGGTAAATA--
66 AATCGAGGGTAAA-ACG
* * **
100073725 GTAATTCTGTA-AACT-GA-GGTAAAATGGTAATTCTGTAAA-TCGAGGGTAAAAC-GTAATT-T
1 GTAATT-T-TACAAATCGAGGGCAAAACAGTAATTCTGTAAACT-GAGGGTAAAACGGTAATTCT
**
100073784 ACAAATCGAGGGTAAAACG
63 GTAAATCGAGGGTAAAACG
* * * * *
100073803 GTAATTCTATAAATCGAGGGTAAAACAGTAATT-TGTAAA-TCAAGGGTAAAAC-ATAATTCTGT
1 GTAATTTTACAAATCGAGGGCAAAACAGTAATTCTGTAAACT-GAGGGTAAAACGGTAATTCTGT
100073865 AAA-CTGAGGGTAAAA--
65 AAATC-GAGGGTAAAACG
* ** * *
100073880 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
1 GTAATTTTACAAATCGAGGGCAAAACAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
100073945 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
*
100073961 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCT-TAAACTGAGGGTAAAACGGTAATTCTGTA
1 GTAATTTTACAAATCGAGGGCAAAACAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
****
100074025 AATCG-GGAGTACTTTG
66 AATCGAGG-GTAAAACG
*
100074041 GTAATTTTACAAGTCGAGGGCA
1 GTAATTTTACAAATCGAGGGCA
100074063 TTTCAGTAAT
Statistics
Matches: 356, Mismatches: 34, Indels: 45
0.82 0.08 0.10
Matches are distributed among these distances:
74 13 0.04
75 31 0.09
76 12 0.03
77 75 0.21
78 48 0.13
79 65 0.18
80 67 0.19
81 45 0.13
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (81 bp):
GTAATTTTACAAATCGAGGGCAAAACAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
AATCGAGGGTAAAACG
Found at i:100074080 original size:80 final size:80
Alignment explanation
Indices: 100073570--100074081 Score: 400
Period size: 80 Copynumber: 6.5 Consensus size: 80
100073560 GGGTATTTTA
** * * *
100073570 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAA-TCAAGGGTAAAACAGTAATTCTGT
1 GTAATTTTACAAATCGAGGGCAAAACAGTAATTC-GTAAACT-GAGGGTAAAACGGTAATTCTGT
100073634 AAATCGAGGGTAAAACG
64 AAATCGAGGGTAAAACG
* * ** * * * *
100073651 ATAATTATGTAAATCG-GGGTAAAA-TGTAATTATGTAAA-T-AGGGTAAAAC-GTAATTC-ATA
1 GTAATTTTACAAATCGAGGGCAAAACAGTAATT-CGTAAACTGAGGGTAAAACGGTAATTCTGTA
100073710 AATCGAGGGTAAATA--
65 AATCGAGGGTAAA-ACG
* * **
100073725 GTAATTCTGTA-AACT-GA-GGTAAAATGGTAATTCTGTAAA-TCGAGGGTAAAAC-GTAATT-T
1 GTAATT-T-TACAAATCGAGGGCAAAACAGTAATTC-GTAAACT-GAGGGTAAAACGGTAATTCT
**
100073784 ACAAATCGAGGGTAAAACG
62 GTAAATCGAGGGTAAAACG
* * * * * *
100073803 GTAATTCTATAAATCGAGGGTAAAACAGTAATTTGTAAA-TCAAGGGTAAAAC-ATAATTCTGTA
1 GTAATTTTACAAATCGAGGGCAAAACAGTAATTCGTAAACT-GAGGGTAAAACGGTAATTCTGTA
100073866 AA-CTGAGGGTAAAA--
65 AATC-GAGGGTAAAACG
* ** * *
100073880 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
1 GTAATTTTACAAATCGAGGGCAAAACAGTAATTC-GTAAACTGAGGGTAAAACGGTAATTCTGTA
100073945 AATCGAGGGTAAAACG
65 AATCGAGGGTAAAACG
* *
100073961 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTTAAACTGAGGGTAAAACGGTAATTCTGTAA
1 GTAATTTTACAAATCGAGGGCAAAACAGTAATTCGTAAACTGAGGGTAAAACGGTAATTCTGTAA
****
100074026 ATCG-GGAGTACTTTG
66 ATCGAGG-GTAAAACG
* *** *
100074041 GTAATTTTACAAGTCGAGGGCATTTCAGTAATTGGTAAACT
1 GTAATTTTACAAATCGAGGGCAAAACAGTAATTCGTAAACT
100074082 AAAGTATTCT
Statistics
Matches: 365, Mismatches: 42, Indels: 49
0.80 0.09 0.11
Matches are distributed among these distances:
74 13 0.04
75 30 0.08
76 12 0.03
77 75 0.21
78 46 0.13
79 64 0.18
80 81 0.22
81 44 0.12
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.29
Consensus pattern (80 bp):
GTAATTTTACAAATCGAGGGCAAAACAGTAATTCGTAAACTGAGGGTAAAACGGTAATTCTGTAA
ATCGAGGGTAAAACG
Found at i:100076819 original size:31 final size:31
Alignment explanation
Indices: 100076778--100076841 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
100076768 CCTTTTCATA
*
100076778 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
100076809 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
100076840 TT
1 TT
100076842 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:100077136 original size:24 final size:23
Alignment explanation
Indices: 100077033--100077173 Score: 205
Period size: 23 Copynumber: 6.0 Consensus size: 23
100077023 TGCTTTATCA
*
100077033 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
100077057 TAATAACTGGGGCAAAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
100077081 TATAACTGGGGCATAAGCCC-TT
1 TATAACTGGGGCATAAGCCCTTT
100077103 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
100077126 TGATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
*
100077150 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
100077173 T
1 T
100077174 TCACTTCCTC
Statistics
Matches: 108, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
22 22 0.20
23 43 0.40
24 31 0.29
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:100077149 original size:46 final size:46
Alignment explanation
Indices: 100077033--100077173 Score: 214
Period size: 47 Copynumber: 3.0 Consensus size: 46
100077023 TGCTTTATCA
* *
100077033 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTT
1 TATAACTGG-GGCATAAGCC-C-TTTAATAACTGGGGCATAAGCCCTTT
100077081 TATAACTGGGGCATAAGCCCTTT-ATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
100077126 TGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
100077173 T
1 T
100077174 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 2, Indels: 7
0.91 0.02 0.07
Matches are distributed among these distances:
45 22 0.25
46 25 0.28
47 28 0.32
48 13 0.15
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (46 bp):
TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTT
Found at i:100077243 original size:15 final size:16
Alignment explanation
Indices: 100077218--100077248 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
100077208 GCATTTATGA
100077218 ACATCCATGTGCATAT
1 ACATCCATGTGCATAT
100077234 ACAT-CATGTGCATAT
1 ACATCCATGTGCATAT
100077249 CATACATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (16 bp):
ACATCCATGTGCATAT
Found at i:100077259 original size:20 final size:20
Alignment explanation
Indices: 100077236--100077301 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
100077226 GTGCATATAC
100077236 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
100077256 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
100077276 -TCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
100077295 ACCATGT
1 ATCATGT
100077302 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
19 19 0.43
20 25 0.57
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:100077267 original size:11 final size:11
Alignment explanation
Indices: 100077236--100077290 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
100077226 GTGCATATAC
100077236 ATCATGTGCAT
1 ATCATGTGCAT
*
100077247 ATCA--TACAT
1 ATCATGTGCAT
100077256 ATCATGTGCAT
1 ATCATGTGCAT
*
100077267 ATCA--TACAT
1 ATCATGTGCAT
100077276 -TCATGTGCAT
1 ATCATGTGCAT
100077286 ATCAT
1 ATCAT
100077291 ACATACCATG
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
8 3 0.09
9 12 0.34
10 4 0.11
11 16 0.46
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:100077281 original size:19 final size:19
Alignment explanation
Indices: 100077232--100077294 Score: 110
Period size: 19 Copynumber: 3.3 Consensus size: 19
100077222 CCATGTGCAT
100077232 ATACA-TCATGTGCATATC
1 ATACATTCATGTGCATATC
100077250 ATACATATCATGTGCATATC
1 ATACAT-TCATGTGCATATC
100077270 ATACATTCATGTGCATATC
1 ATACATTCATGTGCATATC
100077289 ATACAT
1 ATACAT
100077295 ACCATGTTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
18 5 0.12
19 19 0.44
20 19 0.44
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.35
Consensus pattern (19 bp):
ATACATTCATGTGCATATC
Found at i:100077366 original size:25 final size:25
Alignment explanation
Indices: 100077337--100077384 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
100077327 CATTATAAAC
* * *
100077337 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
100077362 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
100077385 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:100078623 original size:27 final size:27
Alignment explanation
Indices: 100078603--100079063 Score: 557
Period size: 27 Copynumber: 17.6 Consensus size: 27
100078593 AGGGTATTTT
*
100078603 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
100078630 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
100078657 AGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
100078684 -GATAATTATGTAAATCG-GGGTAAAA-
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* *
100078709 TGTAA-TATGTAAATC--GGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
100078733 -GTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
100078759 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
100078786 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
100078813 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
100078840 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
100078867 -GTAATTCTGTAAATC-AGGGTAAAA-
1 AGTAATTCTGTAAATCGAGGGTAAAAC
100078891 A-TAATTCTGTAAA-CTGAGGGTAAAA-
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
100078916 AGTAATTCTGTAAATCGAGGGTAAAA-
1 AGTAATTCTGTAAATCGAGGGTAAAAC
100078942 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
100078969 GGTAATT-T-TAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* **
100078994 GGTAATT-TACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
100079020 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
100079047 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
100079064 GGAGTACTTT
Statistics
Matches: 391, Mismatches: 22, Indels: 42
0.86 0.05 0.09
Matches are distributed among these distances:
23 13 0.03
24 30 0.08
25 46 0.12
26 104 0.27
27 196 0.50
28 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:100078764 original size:129 final size:130
Alignment explanation
Indices: 100078604--100079063 Score: 607
Period size: 129 Copynumber: 3.5 Consensus size: 130
100078594 GGGTATTTTA
* * *
100078604 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAA-TCAAGGGTAAAACAGTAATTCTGT
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACT-GAGGGTAAAACAGTAATTCTGT
* *
100078668 AAATCGAGGGTAAAACGATAATTATGTAAATCG-GGGTAAAA-TGTAATATGTAAATC-GGGTAA
65 AAATCGAGGGTAAAACG-TAATTATGTAAATCGAGGGTAAAACGGTAAT-TATAAATCAGGGTAA
100078730 AAC
128 AAC
* *
100078733 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAACAGTAATTCTGTA
* **
100078798 AATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
66 AATCGAGGGTAAAAC-GTAATTATGTAAATCGAGGGTAAAACGGTAA-T-TATAAATC-AGGGTA
100078863 AAAC
127 AAAC
*
100078867 GTAATTCTGTAAATC-AGGGTAAAA-A-TAATTCTGTAAACTGAGGGTAAAA-AGTAATTCTGTA
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAACAGTAATTCTGTA
* * *
100078928 AATCGAGGGTAAAAAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTTTAAATCGAGGGTAAA
66 AATCGAGGGTAAAACGTAATTATGTAAATC-GAGGGTAAAACGGTAATTATAAATC-AGGGTAAA
100078992 AC
129 AC
* * *
100078994 GGTAATT-TACAAATCGAGGGTAAAACAGTAATTCTATAAACTGAGGGTAAAACGGTAATTCTGT
1 -GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAACAGTAATTCTGT
100079058 AAATCG
65 AAATCG
100079064 GGAGTACTTT
Statistics
Matches: 296, Mismatches: 22, Indels: 24
0.87 0.06 0.07
Matches are distributed among these distances:
127 24 0.08
128 17 0.06
129 112 0.38
130 58 0.20
131 44 0.15
132 9 0.03
133 9 0.03
134 23 0.08
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (130 bp):
GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAACAGTAATTCTGTA
AATCGAGGGTAAAACGTAATTATGTAAATCGAGGGTAAAACGGTAATTATAAATCAGGGTAAAAC
Found at i:100082101 original size:23 final size:24
Alignment explanation
Indices: 100082023--100082161 Score: 189
Period size: 24 Copynumber: 6.0 Consensus size: 24
100082013 GCTTTATCAT
*
100082023 ATAACTGGGGCCT-AGCCTCTTTTA
1 ATAACTGGGGCATAAGCC-CTTTTA
* *
100082047 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
100082071 ATAACTGGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
100082094 ATAACTGGGG--TAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
100082116 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
100082139 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
100082162 TCACTTCCTC
Statistics
Matches: 104, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
21 7 0.07
22 14 0.13
23 35 0.34
24 44 0.42
25 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:100082120 original size:45 final size:46
Alignment explanation
Indices: 100082023--100082161 Score: 192
Period size: 45 Copynumber: 3.0 Consensus size: 46
100082013 GCTTTATCAT
* * *
100082023 ATAACTGGGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCC-C-TTTAATAACTGGGG-ATAAGCCCTTTTG
*
100082071 ATAACTGGGGCATAAGCCCTTTGATAACTGGGG-TAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTAATAACTGGGGATAAGCCCTTTTG
100082116 ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTAATAACTGGGG-ATAAGCCCTTTT
100082162 TCACTTCCTC
Statistics
Matches: 83, Mismatches: 5, Indels: 7
0.87 0.05 0.07
Matches are distributed among these distances:
45 42 0.51
47 24 0.29
48 13 0.16
49 4 0.05
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (46 bp):
ATAACTGGGGCATAAGCCCTTTAATAACTGGGGATAAGCCCTTTTG
Found at i:100082233 original size:9 final size:9
Alignment explanation
Indices: 100082219--100082275 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
100082209 ATCTCATGTG
100082219 CATATCATA
1 CATATCATA
*
100082228 CATATCATGTG
1 CATATCA--TA
100082239 CATATCATA
1 CATATCATA
* *
100082248 CATGTCATGTG
1 CATATCA--TA
100082259 CATATCATA
1 CATATCATA
100082268 CATATCAT
1 CATATCAT
100082276 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:100082235 original size:20 final size:20
Alignment explanation
Indices: 100082207--100082277 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
100082197 GCATTTATGA
*
100082207 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
100082227 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
100082247 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
100082267 ACATATCATGT
1 ACATATCATGT
100082278 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:100082242 original size:11 final size:11
Alignment explanation
Indices: 100082212--100082266 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
100082202 TATGAACATC
100082212 TCATGTGCATA
1 TCATGTGCATA
*
100082223 TCA--TACATA
1 TCATGTGCATA
100082232 TCATGTGCATA
1 TCATGTGCATA
* *
100082243 TCA--TACATG
1 TCATGTGCATA
100082252 TCATGTGCATA
1 TCATGTGCATA
100082263 TCAT
1 TCAT
100082267 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:100083599 original size:27 final size:27
Alignment explanation
Indices: 100083579--100084148 Score: 620
Period size: 27 Copynumber: 21.6 Consensus size: 27
100083569 AGGGTATTTT
*
100083579 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
100083606 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
100083633 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
100083660 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
100083687 GGTAATTCTGTAAATC-AGGGT-AAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
100083712 -GATAATTATGTAAATCG-GGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
100083738 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
100083765 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
100083792 AGTAATT-TGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
100083818 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
100083845 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
100083872 GGTAATTCTATAAATCGAGGGT-AAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
100083898 AGTAATT-TGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
100083924 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
100083951 GGTAATTCT-TAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
100083977 A-TAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
100084003 GGTAATTCTGTAAATCGAGGGT-AAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
100084029 AGTAATT-T-TAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
100084054 GGTAATTCT-T-AATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
100084079 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
100084106 GGTAATTCTATAAA-CGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
100084132 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
100084149 GGAGTACTTT
Statistics
Matches: 473, Mismatches: 47, Indels: 46
0.84 0.08 0.08
Matches are distributed among these distances:
23 1 0.00
24 11 0.02
25 73 0.15
26 126 0.27
27 259 0.55
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:100083865 original size:185 final size:182
Alignment explanation
Indices: 100083580--100084148 Score: 739
Period size: 185 Copynumber: 3.1 Consensus size: 182
100083570 GGGTATTTTA
* * * * *
100083580 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAA-TCAAGGGTAAAACAGTAATTCTAT
1 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACT-GAGGGTAAAACGGTAATTCTGT
100083644 AAATCGAGGGTAAAATGGTAATTCTGT-AAATCGAGGGTAAAACGGTAATTCTGTAAATC-AGGG
65 AAATCGAGGGTAAAA-GGTAATT-T-TAAAATCGAGGGTAAAACGGTAATTCT-TAAATCGAGGG
* * *
100083707 TAAACGATAATTATGTAAATCGGGGTAAAATGGTAATTATGTAAATTAGGGGTAAAACG
126 TAAACGATAATT-TGTAAATCGGGGTAAAACGGTAATTCTATAAA-TAGGGGTAAAACG
*
100083766 GTAATTCTATAAATCGAGGGTAAAATAGTAATT-TGTAAACTGAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
100083830 AATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
66 AATCGAGGGTAAAA-GGTAATTTTA-AAATCGAGGGTAAAACGGTAATTCT-TAAATCGAGGGTA
* * *
100083895 AA-TAGTAATTTGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
128 AACGA-TAATTTGTAAATC-GGGGTAAAACGGTAATTCTATAAATAG-GGGTAAAACG
100083952 GTAATTCT-TAAATCGAGGGTAAAATA-TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
*
100084015 AATCGAGGGTAAATA-GTAATTTTAAACT-GAGGGTAAAACGGTAATTCTT-AATCGAGGGTAAA
66 AATCGAGGGTAAA-AGGTAATTTTAAAATCGAGGGTAAAACGGTAATTCTTAAATCGAGGGT-AA
* * *
100084077 ACGGTAATTT-TACAAATCGAGGGTAAAACGGTAATTCTATAAA-CGAGGGTAAAATG
129 ACGATAATTTGT--AAATCG-GGGTAAAACGGTAATTCTATAAATAG-GGGTAAAACG
100084133 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
100084149 GGAGTACTTT
Statistics
Matches: 349, Mismatches: 19, Indels: 34
0.87 0.05 0.08
Matches are distributed among these distances:
180 11 0.03
181 30 0.09
182 55 0.16
183 4 0.01
184 15 0.04
185 151 0.43
186 83 0.24
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (182 bp):
GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTA
AATCGAGGGTAAAAGGTAATTTTAAAATCGAGGGTAAAACGGTAATTCTTAAATCGAGGGTAAAC
GATAATTTGTAAATCGGGGTAAAACGGTAATTCTATAAATAGGGGTAAAACG
Found at i:100084165 original size:53 final size:54
Alignment explanation
Indices: 100083580--100084148 Score: 701
Period size: 53 Copynumber: 10.8 Consensus size: 54
100083570 GGGTATTTTA
* * * *
100083580 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* *
100083634 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * *
100083688 GTAATTCTGTAAATC-AGGGT-AAACGATAATTATGTAAATCG-GGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * **
100083739 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
100083793 GTAATT-TGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* ** *
100083846 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAATA--
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAA-ACG
* *
100083899 GTAATT-TGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
**
100083952 GTAATTCT-TAAATCGAGGGTAAAA-TATAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
100084004 GTAATTCTGTAAATCGAGGGTAAATA--GTAATT-T-TAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAA-ACGGTAATTCTGTAAATC-GAGGGTAAAACG
* **
100084055 GTAATTCT-T-AATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* *
100084107 GTAATTCTATAAA-CGAGGGTAAAATGGTAATTCTGTAAATCG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCG
100084149 GGAGTACTTT
Statistics
Matches: 457, Mismatches: 36, Indels: 45
0.85 0.07 0.08
Matches are distributed among these distances:
48 1 0.00
49 13 0.03
50 7 0.02
51 52 0.11
52 118 0.26
53 143 0.31
54 121 0.26
55 2 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:100084178 original size:79 final size:81
Alignment explanation
Indices: 100083580--100084148 Score: 744
Period size: 79 Copynumber: 7.2 Consensus size: 81
100083570 GGGTATTTTA
* * * * *
100083580 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
100083645 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * *
100083661 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-AGGGT-AAACGATAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
100083724 AATCG-GGGTAAAATG
66 AATCGAGGGTAAAATG
* * ** *
100083739 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATT-TGT
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAT
*
100083802 AAA-CTGAGGGTAAAACG
65 AAATC-GAGGGTAAAATG
* *
100083819 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
*
100083884 AATCGAGGGT-AAATA
66 AATCGAGGGTAAAATG
*
100083899 GTAATT-TGTAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCT-TA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
100083962 AATCGAGGGTAAAAT-
66 AATCGAGGGTAAAATG
* *
100083977 ATAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAATA--GTAATT-T-
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAA-ACGGTAATTCTA
*
100084037 TAAA-CTGAGGGTAAAACG
64 TAAATC-GAGGGTAAAATG
* *
100084055 GTAATTCT-T-AATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
100084118 AA-CGAGGGTAAAATG
66 AATCGAGGGTAAAATG
100084133 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
100084149 GGAGTACTTT
Statistics
Matches: 433, Mismatches: 34, Indels: 43
0.85 0.07 0.08
Matches are distributed among these distances:
75 1 0.00
76 36 0.08
77 24 0.06
78 99 0.23
79 131 0.30
80 89 0.21
81 52 0.12
82 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAATG
Found at i:100087425 original size:46 final size:45
Alignment explanation
Indices: 100087358--100087526 Score: 198
Period size: 46 Copynumber: 3.7 Consensus size: 45
100087348 TGTAACCCGC
*
100087358 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-CTCGCAT
* *
100087404 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCCTCGCAT
* * * * *
100087450 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-CTCGCAT
100087497 CCATAAGTGAACTCGGACTCAACTCAACGA
1 CCATAAGTGAACTCGGACTCAACTCAACGA
100087527 TTTGGATGCT
Statistics
Matches: 103, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
45 3 0.03
46 62 0.60
47 34 0.33
48 4 0.04
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCCTCGCAT
Found at i:100087478 original size:93 final size:92
Alignment explanation
Indices: 100087366--100087535 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 92
100087356 GCCCATAAGT
* *
100087366 GAACTCGGACTCAACTCAACGAGCTCGGGCGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
100087431 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGA-TTCGGATGCCTAGTTACATTTCAC
* *
100087459 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
100087524 CGATTTGGATGC
66 CGATTCGGATGC
100087536 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 8 0.11
93 64 0.89
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGATTCGGATGCCTAGTTACATTTCAC
Found at i:100087992 original size:30 final size:30
Alignment explanation
Indices: 100087958--100088017 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
100087948 ATTCAATACG
100087958 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
100087988 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
100088018 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:100089250 original size:18 final size:18
Alignment explanation
Indices: 100089227--100089273 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
100089217 TAGGAAAACG
* *
100089227 CGAGTTTTCAAAATAGCA
1 CGAGTTTTCAAAAGAACA
*
100089245 CGAGTTTTCTAAAGAACA
1 CGAGTTTTCAAAAGAACA
*
100089263 CGAGCTTTCAA
1 CGAGTTTTCAA
100089274 CAACAAAGTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (18 bp):
CGAGTTTTCAAAAGAACA
Found at i:100093269 original size:7 final size:7
Alignment explanation
Indices: 100093246--100093286 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
100093236 TCAGATTATG
100093246 TAAA-AT
1 TAAATAT
100093252 TAAA-AT
1 TAAATAT
100093258 ATAAATAT
1 -TAAATAT
100093266 TAAATAT
1 TAAATAT
100093273 TAAATAT
1 TAAATAT
*
100093280 CAAATAT
1 TAAATAT
100093287 GAGTATAGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
6 6 0.19
7 24 0.75
8 2 0.06
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (7 bp):
TAAATAT
Found at i:100093274 original size:21 final size:20
Alignment explanation
Indices: 100093246--100093286 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
100093236 TCAGATTATG
100093246 TAAAATTAAAATAT-AAATAT
1 TAAAATT-AAATATCAAATAT
100093266 TAAATATTAAATATCAAATAT
1 TAAA-ATTAAATATCAAATAT
100093287 GAGTATAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
TAAAATTAAATATCAAATAT
Found at i:100095627 original size:40 final size:40
Alignment explanation
Indices: 100095583--100095808 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
100095573 GCTACTCATT
* *
100095583 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
100095623 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
100095663 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
100095703 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
100095743 CAAATGCCTTC-GGATCTTAGTCCAGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
100095784 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
100095809 CATCATTCGA
Statistics
Matches: 168, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 152 0.90
41 13 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:100098843 original size:46 final size:44
Alignment explanation
Indices: 100098776--100099139 Score: 169
Period size: 46 Copynumber: 7.8 Consensus size: 44
100098766 TATGTGTGCT
100098776 AGTGTAAGACATGTCTGGGACATGCATCGACCACATT-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCG---ACATTGATGAGAGCC
* * *
100098822 AGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACATT--GATGAGAGCC
* * * * * *
100098868 AGTGTAAGACATGCCTGGGACATGCATCGGCCTTGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACATT--GAT-GA-GAGCC
* * * * * * ***
100098916 ACTGTAAGACCTGTCTGGGACATGGCGT-AAGC-TTGTTGTGTTTC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGA-CATTGATGAGAGCC
* *
100098960 AGTGTAAGACCTATCTGGGACATGGCATCGACACTGATAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGACA-T--T-GATGAGAGCC
* * * * **
100099009 AGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATAT-ATGAAATTC
1 AGTGTAAGACATGTCTGGGACA-TGCATC-G--AC-AT-TGATGAGAGCC
* * * *
100099058 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGTTGTGCTAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGACATTGATGAG--AGCC
* *
100099105 AGTGTAAGACCATGTTTGGGACATGGCGTCGACAT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACAT
100099140 CTTATCCCAT
Statistics
Matches: 246, Mismatches: 49, Indels: 44
0.73 0.14 0.13
Matches are distributed among these distances:
43 4 0.02
44 27 0.11
45 4 0.02
46 76 0.31
47 12 0.05
48 49 0.20
49 68 0.28
50 1 0.00
51 2 0.01
52 2 0.01
53 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATTGATGAGAGCC
Found at i:100099020 original size:49 final size:49
Alignment explanation
Indices: 100098776--100099138 Score: 208
Period size: 49 Copynumber: 7.7 Consensus size: 49
100098766 TATGTGTGCT
* * *
100098776 AGTGTAAGACATGTCTGGGACAT-GCATCGACCAC--AT-TATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CACTGATAGATGAAAGCC
* * * * * *
100098822 AGTGTAAGACATGTTTGGGACAT-GCATCGGCATTG--AGATGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAAAGCC
* * * * * *
100098868 AGTGTAAGACATGCCTGGGACAT-GCATCGGC-CTTGAGATAT-ACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACAC-TGATAGATGA-AAGCC
* * * ***
100098916 ACTGTAAGACCTGTCTGGGACATGGCGT--A-AGCTTG-TTG-TG--TTTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACA-C-TGATAGATGAAAGCC
* *
100098960 AGTGTAAGACCTATCTGGGACATGGCATCGACACTGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAAAGCC
* * * **
100099009 AGTGTAAGACCTGTCTGGGACACGGCATCGGC-CTCGATATATGAAATTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACT-GATAGATGAAAGCC
** * **
100099058 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTTG-TTG-TGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAAAGCC
* *
100099105 AGTGTAAGACCATGTTTGGGACATGGCGTCGACA
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGACA
100099139 TCTTATCCCA
Statistics
Matches: 248, Mismatches: 48, Indels: 40
0.74 0.14 0.12
Matches are distributed among these distances:
44 25 0.10
45 4 0.02
46 72 0.29
47 19 0.08
48 53 0.21
49 74 0.30
50 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAAAGCC
Found at i:100099077 original size:142 final size:138
Alignment explanation
Indices: 100098821--100099083 Score: 341
Period size: 142 Copynumber: 1.9 Consensus size: 138
100098811 TTATGAGAGC
* * * * *
100098821 CAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGATGAGAGCTAGTGTAAGACATGCCTGG
1 CAGTGTAAGACATATCTGGGACATGCATCGACACTGAGATGAGAGCCAGTGTAAGACATGCCTGG
* *
100098886 GACATGCATCGGCCTTGAGATATACAAGCTACTGTAAGACCTGTCTGGGACATGGCGTAAGCTTG
66 GACAGGCATCGGCCTCGAGATATACAAGCTACTGTAAGACCTGTCTGGGACATGGCGTAAGCTTG
100098951 TTGTGTTT
131 TTGTGTTT
* * *
100098959 CAGTGTAAGACCTATCTGGGACATGGCATCGACACTGATAGATGAGAGCCAGTGTAAGACCTGTC
1 CAGTGTAAGACATATCTGGGACAT-GCATCGACACTG--AGATGAGAGCCAGTGTAAGACATGCC
* * *
100099024 TGGGACACGGCATCGGCCTCGATATATGA-AA-TTCAGTGTAAGACCTGTCTGGGACATGGC
63 TGGGACA-GGCATCGGCCTCGAGATAT-ACAAGCT-ACTGTAAGACCTGTCTGGGACATGGC
100099084 ATCGACTTTG
Statistics
Matches: 106, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
138 21 0.20
139 10 0.09
141 31 0.29
142 43 0.41
143 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (138 bp):
CAGTGTAAGACATATCTGGGACATGCATCGACACTGAGATGAGAGCCAGTGTAAGACATGCCTGG
GACAGGCATCGGCCTCGAGATATACAAGCTACTGTAAGACCTGTCTGGGACATGGCGTAAGCTTG
TTGTGTTT
Found at i:100101026 original size:20 final size:19
Alignment explanation
Indices: 100100983--100101035 Score: 61
Period size: 22 Copynumber: 2.6 Consensus size: 19
100100973 CGGCCTGAAG
*
100100983 ACACGGGCATGTCCTGGGC
1 ACACAGGCATGTCCTGGGC
*
100101002 ACACAGGCATGTCCCTGTGCCC
1 ACACAGGCATGT-CCTG-G-GC
100101024 ACACAGGCATGT
1 ACACAGGCATGT
100101036 GACCCTGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 11 0.38
20 4 0.14
21 1 0.03
22 13 0.45
ACGTcount: A:0.21, C:0.34, G:0.28, T:0.17
Consensus pattern (19 bp):
ACACAGGCATGTCCTGGGC
Found at i:100101398 original size:34 final size:34
Alignment explanation
Indices: 100101367--100101513 Score: 135
Period size: 34 Copynumber: 4.5 Consensus size: 34
100101357 AACATATATT
100101367 AAATCAAAATGTCATAGTTCCA-ATATTATATACA
1 AAATCAAAATGTCATAGTTCCAGA-ATTATATACA
100101401 AAATCAAAATGTCATAGTTCCAGAATTATATACA
1 AAATCAAAATGTCATAGTTCCAGAATTATATACA
* * * * **
100101435 AGACCAGAATGTCATA-TTTCAGAAACATAT-C-
1 AAATCAAAATGTCATAGTTCCAGAATTATATACA
* * * * **
100101466 ATATCAAAATGTCATATTTTCAAAAACATAT-C-
1 AAATCAAAATGTCATAGTTCCAGAATTATATACA
100101498 AAATCAAAATGTCATA
1 AAATCAAAATGTCATA
100101514 TTTTCAAAAA
Statistics
Matches: 100, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
31 13 0.13
32 30 0.30
33 11 0.11
34 45 0.45
35 1 0.01
ACGTcount: A:0.47, C:0.16, G:0.07, T:0.30
Consensus pattern (34 bp):
AAATCAAAATGTCATAGTTCCAGAATTATATACA
Found at i:100101493 original size:32 final size:32
Alignment explanation
Indices: 100101442--100101546 Score: 185
Period size: 32 Copynumber: 3.3 Consensus size: 32
100101432 ACAAGACCAG
*
100101442 AATGTCATA-TTTCAGAAACATATCATATCAA
1 AATGTCATATTTTCAAAAACATATCATATCAA
*
100101473 AATGTCATATTTTCAAAAACATATCAAATCAA
1 AATGTCATATTTTCAAAAACATATCATATCAA
100101505 AATGTCATATTTTCAAAAACATATCATATCAA
1 AATGTCATATTTTCAAAAACATATCATATCAA
100101537 AATGTCATAT
1 AATGTCATAT
100101547 CAGATTAGAA
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
31 9 0.13
32 61 0.87
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (32 bp):
AATGTCATATTTTCAAAAACATATCATATCAA
Found at i:100101536 original size:16 final size:16
Alignment explanation
Indices: 100101457--100101538 Score: 55
Period size: 16 Copynumber: 5.1 Consensus size: 16
100101447 CATATTTCAG
100101457 AAACATATCATATCAA
1 AAACATATCATATCAA
* *
100101473 AATGTCATAT--TTTCAA
1 AA--ACATATCATATCAA
*
100101489 AAACATATCAAATCAA
1 AAACATATCATATCAA
* *
100101505 AATGTCATAT--TTTCAA
1 AA--ACATATCATATCAA
100101521 AAACATATCATATCAA
1 AAACATATCATATCAA
100101537 AA
1 AA
100101539 TGTCATATCA
Statistics
Matches: 48, Mismatches: 10, Indels: 16
0.65 0.14 0.22
Matches are distributed among these distances:
14 10 0.21
16 28 0.58
18 10 0.21
ACGTcount: A:0.51, C:0.16, G:0.02, T:0.30
Consensus pattern (16 bp):
AAACATATCATATCAA
Found at i:100105910 original size:18 final size:18
Alignment explanation
Indices: 100105884--100105937 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
100105874 ACCCTCCTAT
*
100105884 TGAACATAAAAATAAAAA
1 TGAAAATAAAAATAAAAA
** *
100105902 TGAAAATAAACTTAAAAT
1 TGAAAATAAAAATAAAAA
*
100105920 TGAAAACAAAAATTAAAA
1 TGAAAATAAAAA-TAAAA
100105938 CTCCTTTTAA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
18 23 0.82
19 5 0.18
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.20
Consensus pattern (18 bp):
TGAAAATAAAAATAAAAA
Found at i:100110270 original size:22 final size:22
Alignment explanation
Indices: 100110245--100110300 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
100110235 GCTCAACGTT
*
100110245 GTAGACATGATGACTCAACACC
1 GTAGACAGGATGACTCAACACC
* *
100110267 GTAGACAGGACGACTCAACTCC
1 GTAGACAGGATGACTCAACACC
100110289 GTAGACAGGATG
1 GTAGACAGGATG
100110301 GCTAAAGGCC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.34, C:0.25, G:0.25, T:0.16
Consensus pattern (22 bp):
GTAGACAGGATGACTCAACACC
Found at i:100113878 original size:55 final size:56
Alignment explanation
Indices: 100113812--100113933 Score: 210
Period size: 55 Copynumber: 2.2 Consensus size: 56
100113802 TTAGAACCAG
*
100113812 AAATTAAAAGAGGCCTTGTTACAACCCATATCAAATATAAATACTTGTAAATAGA-
1 AAATTAAAAGAGGCCTTGTTACAACCCAGATCAAATATAAATACTTGTAAATAGAT
*
100113867 AAATTAAAAGAGGCCTTGTTACAACCCAGATCAAATATAAGTACTTGTAAATAGAT
1 AAATTAAAAGAGGCCTTGTTACAACCCAGATCAAATATAAATACTTGTAAATAGAT
*
100113923 AACTTAAAAGA
1 AAATTAAAAGA
100113934 AAATCAGAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
55 53 0.84
56 10 0.16
ACGTcount: A:0.48, C:0.14, G:0.12, T:0.26
Consensus pattern (56 bp):
AAATTAAAAGAGGCCTTGTTACAACCCAGATCAAATATAAATACTTGTAAATAGAT
Found at i:100114263 original size:27 final size:27
Alignment explanation
Indices: 100114232--100114284 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
100114222 TAATAATAGT
*
100114232 TGGGCCT-AGCCCATTAACAGAATCAGG
1 TGGGCCTAAGCCCAGT-ACAGAATCAGG
100114259 TGGGCCTAAGCCCAGTACAGAATCAG
1 TGGGCCTAAGCCCAGTACAGAATCAG
100114285 TATCAGATGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.30, C:0.26, G:0.26, T:0.17
Consensus pattern (27 bp):
TGGGCCTAAGCCCAGTACAGAATCAGG
Found at i:100116276 original size:28 final size:28
Alignment explanation
Indices: 100116244--100116327 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
100116234 AACTTCGATC
100116244 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
100116272 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
100116294 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
100116322 ACGTGT
1 ACGTGT
100116328 ACCAGATGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:100116317 original size:50 final size:49
Alignment explanation
Indices: 100116140--100116384 Score: 301
Period size: 49 Copynumber: 4.9 Consensus size: 49
100116130 GCTATTGTGA
* * *
100116140 GGTCATGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** * * * *
100116189 GGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * **
100116239 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
100116289 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
100116339 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
100116385 GCTTCGGCTA
Statistics
Matches: 166, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 79 0.48
50 50 0.30
51 37 0.22
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:100118285 original size:26 final size:26
Alignment explanation
Indices: 100118255--100118336 Score: 96
Period size: 26 Copynumber: 3.1 Consensus size: 26
100118245 TACCTACCTA
*
100118255 AGGTATAACAGTCATTTTCATCCATT
1 AGGTATAACAGTCATTTTCACCCATT
**
100118281 AGGTATAACAGTCAATTAACCTACCCA--
1 AGGTATAACAGTC-ATT-TTC-ACCCATT
100118308 AGGTATAACAGTCATTTTCACCCATT
1 AGGTATAACAGTCATTTTCACCCATT
100118334 AGG
1 AGG
100118337 GGTAGAATAG
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
24 5 0.11
25 1 0.02
26 19 0.41
27 16 0.35
28 1 0.02
29 4 0.09
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.30
Consensus pattern (26 bp):
AGGTATAACAGTCATTTTCACCCATT
Found at i:100120572 original size:15 final size:15
Alignment explanation
Indices: 100120552--100120601 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
100120542 ATCACTTAAT
100120552 AAAATCTGTCAAATC
1 AAAATCTGTCAAATC
100120567 AAAATC--TCATAAT-
1 AAAATCTGTCA-AATC
* *
100120580 ACAATCTGTTAAATC
1 AAAATCTGTCAAATC
100120595 AAAATCT
1 AAAATCT
100120602 CATATAACAC
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
13 8 0.29
14 6 0.21
15 14 0.50
ACGTcount: A:0.48, C:0.18, G:0.04, T:0.30
Consensus pattern (15 bp):
AAAATCTGTCAAATC
Found at i:100120621 original size:28 final size:28
Alignment explanation
Indices: 100120548--100120605 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
100120538 ATTGATCACT
* *
100120548 TAATAAAATCTGTCAAATCAAAATCTCA
1 TAATACAATCTGTTAAATCAAAATCTCA
100120576 TAATACAATCTGTTAAATCAAAATCTCA
1 TAATACAATCTGTTAAATCAAAATCTCA
100120604 TA
1 TA
100120606 TAACACTGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.48, C:0.17, G:0.03, T:0.31
Consensus pattern (28 bp):
TAATACAATCTGTTAAATCAAAATCTCA
Found at i:100122269 original size:27 final size:26
Alignment explanation
Indices: 100122239--100122291 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
100122229 TCTTACCTCT
* *
100122239 TTATGAATATTTTAAGACTTCTGTACA
1 TTATGAATACTTTAA-ACATCTGTACA
**
100122266 TTATTCATACTTTAAACATCTGTACA
1 TTATGAATACTTTAAACATCTGTACA
100122292 CTTAGTGCCC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.34, C:0.15, G:0.08, T:0.43
Consensus pattern (26 bp):
TTATGAATACTTTAAACATCTGTACA
Found at i:100126233 original size:18 final size:18
Alignment explanation
Indices: 100126210--100126245 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
100126200 ACAGGGCCAA
100126210 GATGGGCTAAGTGGGCCC
1 GATGGGCTAAGTGGGCCC
100126228 GATGGGCTAAGTGGGCCC
1 GATGGGCTAAGTGGGCCC
100126246 ATAATAGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.22, G:0.44, T:0.17
Consensus pattern (18 bp):
GATGGGCTAAGTGGGCCC
Found at i:100126337 original size:29 final size:29
Alignment explanation
Indices: 100126302--100126421 Score: 188
Period size: 29 Copynumber: 4.2 Consensus size: 29
100126292 AAAAGCATAA
100126302 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
100126331 ACATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
100126360 ATACGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
100126389 ATATGGATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
100126417 ATATG
1 ATATG
100126422 CATGCATGTA
Statistics
Matches: 84, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
28 20 0.24
29 64 0.76
ACGTcount: A:0.24, C:0.15, G:0.33, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:100130897 original size:28 final size:29
Alignment explanation
Indices: 100130814--100130909 Score: 140
Period size: 29 Copynumber: 3.3 Consensus size: 29
100130804 AAAAGCATGA
*
100130814 ATATGAATGTGATTTGGTCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
100130843 ATACGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
100130872 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
100130900 ATATGCATGT
1 ATATGAATGT
100130910 ATGTAGACTT
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
28 23 0.38
29 37 0.62
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:100132868 original size:43 final size:44
Alignment explanation
Indices: 100132812--100133045 Score: 190
Period size: 43 Copynumber: 5.6 Consensus size: 44
100132802 TAATTAAGCT
* *
100132812 TGCACATACAGTGCATCATCGGATAAAATTGAAACAACATACTGG
1 TGCACATA-AGTGCATCATCGGATAAAACTGAAGCAACATACTGG
*
100132857 TGCACA-AAGTGCATCATCGGATAAAACCGAAGCAACATAC---
1 TGCACATAAGTGCATCATCGGATAAAACTGAAGCAACATACTGG
* * * *
100132897 TGCACACAA-T-CATCAT---ATAATA-TCGAAGCAACGTA-TTG
1 TGCACATAAGTGCATCATCGGATAAAACT-GAAGCAACATACTGG
* * * *
100132935 -GCACATATAGTACATCATTGAATAATACTGAAGCAACATACTGG
1 TGCACATA-AGTGCATCATCGGATAAAACTGAAGCAACATACTGG
** *
100132979 CACACAT-AGTGCATCATCGGATAAAACTGAAGCAACATACTAG
1 TGCACATAAGTGCATCATCGGATAAAACTGAAGCAACATACTGG
** *
100133022 AACACAT-AGTGCATCATCAGATAA
1 TGCACATAAGTGCATCATCGGATAA
100133046 TACCGAAGTA
Statistics
Matches: 158, Mismatches: 17, Indels: 30
0.77 0.08 0.15
Matches are distributed among these distances:
36 15 0.09
37 6 0.04
38 1 0.01
39 7 0.04
40 13 0.08
41 2 0.01
43 99 0.63
44 4 0.03
45 11 0.07
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.21
Consensus pattern (44 bp):
TGCACATAAGTGCATCATCGGATAAAACTGAAGCAACATACTGG
Found at i:100142872 original size:54 final size:54
Alignment explanation
Indices: 100142779--100142894 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
100142769 CCGTGTGCCG
* * * * *
100142779 GGCTATGTAACTCTTAAAATAACCCTACATGCCTCTGTCCTAGGCCATGGGTTA
1 GGCTGTGTAACTCTCAAAATAACCCCACATACCTCTGTCCCAGGCCATGGGTTA
* * * *
100142833 GGCTGTGTAACTCTCGAAATAGCCCCACATACCTGTGTCCCAGGCCATGGTTTA
1 GGCTGTGTAACTCTCAAAATAACCCCACATACCTCTGTCCCAGGCCATGGGTTA
*
100142887 GGCCGTGT
1 GGCTGTGT
100142895 CACTGTCTGA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (54 bp):
GGCTGTGTAACTCTCAAAATAACCCCACATACCTCTGTCCCAGGCCATGGGTTA
Found at i:100145420 original size:21 final size:21
Alignment explanation
Indices: 100145347--100145416 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
100145337 GGCTACAGAA
* *
100145347 TTCTATCAATAGAACTAGGAG
1 TTCTATCAATACAACTTGGAG
*
100145368 TTCTACCAATACAACTCTGG-G
1 TTCTATCAATACAACT-TGGAG
* *
100145389 TTCTATCGATACAACTTGGAC
1 TTCTATCAATACAACTTGGAG
100145410 TTCTATC
1 TTCTATC
100145417 GATAAAACGC
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
20 3 0.07
21 36 0.88
22 2 0.05
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (21 bp):
TTCTATCAATACAACTTGGAG
Found at i:100147506 original size:21 final size:21
Alignment explanation
Indices: 100147482--100147522 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
100147472 GAATTAAATG
100147482 AATATACATTTGAAGAATTAC
1 AATATACATTTGAAGAATTAC
* * *
100147503 AATATGCCTTTGATGAATTA
1 AATATACATTTGAAGAATTA
100147523 ACTATAGATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (21 bp):
AATATACATTTGAAGAATTAC
Found at i:100158499 original size:3 final size:3
Alignment explanation
Indices: 100158493--100158544 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
100158483 CTTGTACACG
100158493 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
100158541 TAT T
1 TAT T
100158545 TATTTATATA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:100161762 original size:29 final size:29
Alignment explanation
Indices: 100161691--100161814 Score: 128
Period size: 29 Copynumber: 4.3 Consensus size: 29
100161681 ACCTTTACAT
* *
100161691 ACATGCATATGGCCCA-CTTGGCCCAA-TC
1 ACATTCATATGGCCCATC-AGGCCCAATTC
* *
100161719 TCATTTATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
*
100161748 ACATTCATATGGCCCATCAGGCCTAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
* * * *
100161777 ATATTCATGTGGCCCATTAGG-CCAAATC
1 ACATTCATATGGCCCATCAGGCCCAATTC
*
100161805 ACATGCATAT
1 ACATTCATAT
100161815 TCATGCTCAC
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
28 32 0.41
29 47 0.59
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATCAGGCCCAATTC
Found at i:100167427 original size:29 final size:29
Alignment explanation
Indices: 100167394--100167554 Score: 171
Period size: 29 Copynumber: 5.6 Consensus size: 29
100167384 GTGACGAGAT
100167394 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
100167423 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
100167452 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
100167481 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
100167510 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
100167539 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
100167555 AAATCGAGTA
Statistics
Matches: 112, Mismatches: 19, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 110 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:100167591 original size:2 final size:2
Alignment explanation
Indices: 100167586--100167622 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
100167576 GTGTGCGTAC
100167586 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
100167623 CTCCGATCGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:100175283 original size:40 final size:40
Alignment explanation
Indices: 100175238--100175367 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
100175228 CGGAATACAA
100175238 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
100175278 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
100175318 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
100175358 CCGGATATAA
1 CCGGATATAA
100175368 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:100175382 original size:40 final size:40
Alignment explanation
Indices: 100175238--100175400 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
100175228 CGGAATACAA
* **
100175238 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
100175278 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
100175318 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
100175358 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
100175397 CCGG
1 CCGG
100175401 GTATCATTCA
Statistics
Matches: 100, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
39 11 0.11
40 89 0.89
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:100180012 original size:39 final size:40
Alignment explanation
Indices: 100179954--100180054 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
100179944 AAATTGAATG
* *
100179954 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
100179993 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
100180033 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
100180055 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:100180047 original size:40 final size:40
Alignment explanation
Indices: 100179954--100180104 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
100179944 AAATTGAATG
* * * * *
100179954 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
100179993 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
100180033 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
100180073 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
100180105 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 32 0.33
40 62 0.65
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:100180119 original size:40 final size:38
Alignment explanation
Indices: 100179950--100180121 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
100179940 TGAGAAATTG
* *
100179950 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
100179989 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
100180026 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
100180066 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
100180106 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
100180122 TAAAGTCCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 26 0.24
40 74 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:100188143 original size:40 final size:39
Alignment explanation
Indices: 100187975--100188145 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
100187965 AGAAATTGAA
* *
100187975 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
100188015 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
100188055 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
100188095 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
100188135 TGATATCCGGG
1 TGATATCCGGG
100188146 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:100194701 original size:13 final size:13
Alignment explanation
Indices: 100194683--100194710 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
100194673 ACATATTATA
100194683 AATATTTTGTGTT
1 AATATTTTGTGTT
100194696 AATATTTTGTGTT
1 AATATTTTGTGTT
100194709 AA
1 AA
100194711 AATAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:100196169 original size:40 final size:38
Alignment explanation
Indices: 100196109--100196322 Score: 306
Period size: 40 Copynumber: 5.4 Consensus size: 38
100196099 CGGATGATAA
100196109 CCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGG-CTAAG-TCCGAAGGCATTTGTGCTAGTTACTATAT
100196149 CCAGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-
1 CC-GGCTAAGT-CCGAAGGCATTTGTGCTAGTTACTATAT
100196188 CCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGG-CTAAG-TCCGAAGGCATTTGTGCTAGTTACTATAT
100196228 CCGGGCTAAGTCC-AAGGCATTTGTGCTAGTTACTATAT
1 CC-GGCTAAGTCCGAAGGCATTTGTGCTAGTTACTATAT
* *
100196266 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CC-GGCTAAGT-CCGAAGGCATTTGTGCTAGTTACTATAT
*
100196306 CCGGCTAAATCCGAAGG
1 CCGGCTAAGTCCGAAGG
100196323 TACTTGGGTT
Statistics
Matches: 163, Mismatches: 3, Indels: 18
0.89 0.02 0.10
Matches are distributed among these distances:
38 45 0.28
39 47 0.29
40 67 0.41
41 4 0.02
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (38 bp):
CCGGCTAAGTCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:100196239 original size:79 final size:77
Alignment explanation
Indices: 100196108--100196322 Score: 335
Period size: 79 Copynumber: 2.8 Consensus size: 77
100196098 TCGGATGATA
100196108 ACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAGTCCCGAAGGCATTT
1 ACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCC-GGCTAAGT-CCGAAGGCATTT
100196173 GTGCTAGTTACTAT
64 GTGCTAGTTACTAT
100196187 ACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCC-AAGGCATTTG
1 ACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCC-GGCTAAGTCCGAAGGCATTTG
100196251 TGCTAGTTACTAT
65 TGCTAGTTACTAT
* * * *
100196264 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCGAAGG
1 A-CCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTTACTATATCCGGCTAAGTCCGAAGG
100196323 TACTTGGGTT
Statistics
Matches: 128, Mismatches: 5, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
77 34 0.27
78 43 0.34
79 51 0.40
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.28
Consensus pattern (77 bp):
ACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGCTAAGTCCGAAGGCATTTGT
GCTAGTTACTAT
Found at i:100207672 original size:90 final size:90
Alignment explanation
Indices: 100207571--100207736 Score: 210
Period size: 90 Copynumber: 1.8 Consensus size: 90
100207561 TCAGCATCGT
* * *
100207571 TATGTGATTTTGTATAAGACCAT-GTCTGGGACATGGGACCGATATGAGG-TCCAGTGTAAGACC
1 TATGAGATTTTGTATAAGACCATAGTCT-GGACATGGCACCGATATGAGGATCCA-TGAAAGACC
100207634 ATGTCTGGGACATTGCATCGGTACCAA
64 ATGTCTGGGACATTGCATCGGTACCAA
* * * ** * *
100207661 TATGAGATTTTGTGTAAGACCATATTCTTGTTATGGCATCGATATGTGGATCCATGAAAGACCAT
1 TATGAGATTTTGTATAAGACCATAGTCTGGACATGGCACCGATATGAGGATCCATGAAAGACCAT
100207726 GTCTGGGACAT
66 GTCTGGGACAT
100207737 GACTTTGGTA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
90 57 0.89
91 7 0.11
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (90 bp):
TATGAGATTTTGTATAAGACCATAGTCTGGACATGGCACCGATATGAGGATCCATGAAAGACCAT
GTCTGGGACATTGCATCGGTACCAA
Found at i:100207683 original size:48 final size:42
Alignment explanation
Indices: 100207571--100207683 Score: 109
Period size: 42 Copynumber: 2.5 Consensus size: 42
100207561 TCAGCATCGT
* * *
100207571 TATGTGATTTTGTATAAGACCATGTCTGGGACATGGGACCGA
1 TATGAGATTTTGTGTAAGACCATGTCTGGGACATGGGACCAA
* ***
100207613 TATGAGGTCCAGTGTAAGACCATGTCTGGGACATTGCATCGGTACCAA
1 TATGAGATTTTGTGTAAGACCATGTCTGGGACA-TG----GG-ACCAA
100207661 TATGAGATTTTGTGTAAGACCAT
1 TATGAGATTTTGTGTAAGACCAT
100207684 ATTCTTGTTA
Statistics
Matches: 54, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
42 27 0.50
43 2 0.04
47 2 0.04
48 23 0.43
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (42 bp):
TATGAGATTTTGTGTAAGACCATGTCTGGGACATGGGACCAA
Found at i:100211381 original size:49 final size:49
Alignment explanation
Indices: 100211184--100211547 Score: 306
Period size: 48 Copynumber: 7.6 Consensus size: 49
100211174 TATGTGTGCT
* * ** *
100211184 AGTGTAAGACATGTCTGGGACAT-G-ATCGGCCAC-ATA-ATTAAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATAGATGAAAGCC
* * * *
100211229 AGTGTAAGACCATGTCTGGGACATGACATCGGCATT-G--AGATGAGAGCT
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGAC-TTCGATAGATGAAAGCC
* * * * * *
100211277 AGTGTAAGACATGTTTGGGACAT-GCATCGGCTTCGAGATAT-ACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATAGATGA-AAGCC
* * *
100211325 AGTGTAAGACCTGTCTGGCACATGGCATCGACATCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATAGATGAAAGCC
* * * *
100211374 AGTGTAAGACCTGTCTGGGACACGGCATC-AGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CTTCGATAGATGAAAGCC
* * **
100211423 AGTGTAAGACCTATCTGGGACATGGCATCGACTTTGAT-G-TGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATAGATGAAAGCC
* **
100211470 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTTGAT-G-TGCTAGCC
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGACTTCGATAGATGAAAGCC
*
100211518 AGTGTAAGATCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CCTGTCTGGGACATGGCATC
100211548 AGCATCTTAC
Statistics
Matches: 266, Mismatches: 37, Indels: 29
0.80 0.11 0.09
Matches are distributed among these distances:
45 12 0.05
46 20 0.08
47 29 0.11
48 112 0.42
49 91 0.34
50 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACTTCGATAGATGAAAGCC
Found at i:100211383 original size:97 final size:95
Alignment explanation
Indices: 100211184--100211500 Score: 335
Period size: 97 Copynumber: 3.3 Consensus size: 95
100211174 TATGTGTGCT
*
100211184 AGTGTAAGACATGTCTGGGACATG-ATCGGC-C-ACATAATTAAAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCGACAT-A-TAAAGCTAGTGTAAGACC-TGTCT
* * *
100211246 GGGACATGACATCGGCATTG--AGATGAGAGCT
63 GGGACATGGCATCGACATTGATAGATGAGAGCC
* *
100211277 AGTGTAAGACATGTTTGGGACATGCATCGGCTTCGAGATATACAAGCTAGTGTAAGACCTGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-TCGACATATA-AAGCTAGTGTAAGACCTGTCTG
* *
100211342 GCACATGGCATCGACATCGATAGATGAGAGCC
64 GGACATGGCATCGACATTGATAGATGAGAGCC
* * * * *
100211374 AGTGTAAGACCTGTCTGGGACACGGCATCAGCCTCGATATATGAAAG-TCAGTGTAAGACCTATC
1 AGTGTAAGACATGTCTGGGACA-TGCATC-GGCTCGACATAT-AAAGCT-AGTGTAAGACCTGTC
* **
100211438 TGGGACATGGCATCGACTTTGAT-G-TGCTAGCC
62 TGGGACATGGCATCGACATTGATAGATGAGAGCC
100211470 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
100211501 ACTTTGATGT
Statistics
Matches: 190, Mismatches: 21, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
93 23 0.12
94 6 0.03
95 23 0.12
96 33 0.17
97 52 0.27
98 50 0.26
99 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (95 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCGACATATAAAGCTAGTGTAAGACCTGTCTGGG
ACATGGCATCGACATTGATAGATGAGAGCC
Found at i:100218063 original size:142 final size:145
Alignment explanation
Indices: 100217841--100218162 Score: 363
Period size: 142 Copynumber: 2.3 Consensus size: 145
100217831 ACATAATTAA
*** * * ** * *
100217841 AGCCAGTGTAATTTCATGTCTAGGACATGGCATCGGCATTGAGA-C-GAGAGCTAGTGTAAGACA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCGATAGCTGAGAGCCAGTGTAAGACA
* * ** **
100217904 TGTTTGGGACATGCATCAACCTCAAGATAT-ACAAG-CTAGTGTAAGGCCTGTCTGGAACATGGC
66 TATCTGGGACAAACATCAACCTCAAGATATGA-AAGTC-AGTGTAAAACCTGTCTGGAACATGGC
*
100217967 ATC-AGCTTGATGTG-T
129 ATCGAACTTGATGTGCT
* *
100217982 -GTCAGTGTAAGACC-TGTCTGGGACATGGCATCGACACCGATAGCTGAGAGCCAGTGTAAGACC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCGATAGCTGAGAGCCAGTGTAAGACA
* * *
100218045 TATCTGGGACACAACATCAACCTCGATATATGAAAGTCAGTGTAAAACCTGTCTGGGACATGGCA
66 TATCTGGGACA-AACATCAACCTCAAGATATGAAAGTCAGTGTAAAACCTGTCTGGAACATGGCA
*
100218110 TCGAATTTGATGTGCT
130 TCGAACTTGATGTGCT
100218126 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
100218163 TTTGATGTGC
Statistics
Matches: 149, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
139 23 0.15
140 11 0.07
141 25 0.17
142 44 0.30
143 11 0.07
144 1 0.01
145 13 0.09
146 21 0.14
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (145 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCGATAGCTGAGAGCCAGTGTAAGACA
TATCTGGGACAAACATCAACCTCAAGATATGAAAGTCAGTGTAAAACCTGTCTGGAACATGGCAT
CGAACTTGATGTGCT
Found at i:100218150 original size:48 final size:47
Alignment explanation
Indices: 100217941--100218204 Score: 225
Period size: 49 Copynumber: 5.6 Consensus size: 47
100217931 TATACAAGCT
* * * *
100217941 AGTGTAAGGCCTGTCTGGAACATGGCATC-AGCTTGATGTG-T-GTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAACTTGATGTGATAGCC
* *
100217985 AGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGCTGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-ACTTGAT-G-TGATAGCC
* *** * * * *
100218034 AGTGTAAGACCTATCTGGGACACAACATC-AACCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAA-CTTG--ATGTGATAGCC
* * *
100218083 AGTGTAAAACCTGTCTGGGACATGGCATCGAATTTGATGTGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAACTTGATGTGATAGCC
*
100218130 AGTGTAAGACCATGTCTGGGACATGGCATCG-ACTTTGATGTGCTAGCC
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGAAC-TTGATGTGATAGCC
* *
100218178 AGTGTAAAATCATGTCTGGGACATGGC
1 AGTGTAAGA-CCTGTCTGGGACATGGC
100218205 GTCGGCATCT
Statistics
Matches: 178, Mismatches: 28, Indels: 24
0.77 0.12 0.10
Matches are distributed among these distances:
44 27 0.15
45 4 0.02
46 2 0.01
47 21 0.12
48 58 0.33
49 62 0.35
50 2 0.01
51 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGAACTTGATGTGATAGCC
Found at i:100220421 original size:2 final size:2
Alignment explanation
Indices: 100220414--100220442 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
100220404 AAGACTAGTC
100220414 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
100220443 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:100228592 original size:48 final size:48
Alignment explanation
Indices: 100228460--100228772 Score: 177
Period size: 48 Copynumber: 6.8 Consensus size: 48
100228450 ACCATGGTTG
* ** * * **
100228460 ATGAGATCCCGTGTAAGACCATGTCAAGGATATGGCATCGGCATCCAAG-
1 ATGAGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGACA--CTGGT
* *
100228509 ATAAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACTGGT
1 ATGAGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACTGGT
* * * * * * * *
100228557 ATGTGATCCCGTGTAAGACCATATCAGGGATATGGCTTCTG-CACCGCT
1 ATGAGATCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACACTGGT
* ** *** *
100228605 TTTTGATTTTGTGTAAGACCATGTCTGGGACATGGCAT------TGAT
1 ATGAGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACTGGT
* ** *
100228647 ATGAGGTCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTACTGAT
1 ATGAGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACTGGT
*** * * *
100228695 ATGAGATTTTGTGTAAGACCATATCTGGGATATGGCATCGATA-T-G-
1 ATGAGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACTGGT
* *
100228740 -T-AGATCCA-TGTAAGACCATGTCTAGGATATGGC
1 ATGAGATCCAGTGTAAGACCATGTCTGGGACATGGC
100228773 TTTGGCACTC
Statistics
Matches: 206, Mismatches: 50, Indels: 23
0.74 0.18 0.08
Matches are distributed among these distances:
42 56 0.27
43 4 0.02
44 1 0.00
47 3 0.01
48 105 0.51
49 37 0.18
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (48 bp):
ATGAGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACTGGT
Found at i:100228674 original size:42 final size:42
Alignment explanation
Indices: 100228615--100228772 Score: 165
Period size: 42 Copynumber: 3.6 Consensus size: 42
100228605 TTTTGATTTT
*
100228615 GTGTAAGACCATGTCTGGGACATGGCATTGATATGAGGTCCA
1 GTGTAAGACCATGTCTGGGACATGGCATTGATATGAGATCCA
***
100228657 GTGTAAGACCATGTCTGGGACATGGCATCGGTACTGATATGAGATTTT
1 GTGTAAGACCATGTCTGGGACATGGCA----T--TGATATGAGATCCA
* * *
100228705 GTGTAAGACCATATCTGGGATATGGCATCGATATGTAGATCCA
1 GTGTAAGACCATGTCTGGGACATGGCATTGATATG-AGATCCA
* *
100228748 -TGTAAGACCATGTCTAGGATATGGC
1 GTGTAAGACCATGTCTGGGACATGGC
100228773 TTTGGCACTC
Statistics
Matches: 97, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
42 56 0.58
43 4 0.04
44 1 0.01
46 1 0.01
48 35 0.36
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATGGCATTGATATGAGATCCA
Found at i:100228714 original size:90 final size:91
Alignment explanation
Indices: 100228470--100228772 Score: 295
Period size: 90 Copynumber: 3.3 Consensus size: 91
100228460 ATGAGATCCC
** * * * ****
100228470 GTGTAAGACCATGTCAAGGATATGGCATCGGCATCCAAGATAAGAGCCAGTGTAAGACCATGTCT
1 GTGTAAGACCATGTCTGGGATATGGCATCGGCA-CCGATATGAGATTTTGTGTAAGACCATGTCT
* *
100228535 GGGACATGGCATCGACACTGGTATGTGATCCC
65 GGGACATGGCATCGATA-T-GTA-G-G-TCCA
* * * * * * **
100228567 GTGTAAGACCATATCAGGGATATGGCTTCTGCACCGCTTTTTGATTTTGTGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGGATATGGCATCGGCACCGATATGAGATTTTGTGTAAGACCATGTCTG
*
100228632 GGACATGGCATTGATATG-AGGTCCA
66 GGACATGGCATCGATATGTAGGTCCA
* * * *
100228657 GTGTAAGACCATGTCTGGGACATGGCATCGGTACTGATATGAGATTTTGTGTAAGACCATATCTG
1 GTGTAAGACCATGTCTGGGATATGGCATCGGCACCGATATGAGATTTTGTGTAAGACCATGTCTG
* *
100228722 GGATATGGCATCGATATGTAGATCCA
66 GGACATGGCATCGATATGTAGGTCCA
*
100228748 -TGTAAGACCATGTCTAGGATATGGC
1 GTGTAAGACCATGTCTGGGATATGGC
100228773 TTTGGCACTC
Statistics
Matches: 171, Mismatches: 34, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
90 95 0.56
91 7 0.04
92 1 0.01
93 1 0.01
94 1 0.01
95 1 0.01
96 36 0.21
97 29 0.17
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (91 bp):
GTGTAAGACCATGTCTGGGATATGGCATCGGCACCGATATGAGATTTTGTGTAAGACCATGTCTG
GGACATGGCATCGATATGTAGGTCCA
Found at i:100234974 original size:40 final size:40
Alignment explanation
Indices: 100234930--100235137 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
100234920 CGAGACATAG
* *
100234930 CCCGG-TTATAGTAATTCGCAAAAATGCCTTCGGGACTTAA
1 CCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAA
* *
100234970 CCCGGATTTGGTAACTCGCACAAATGCCTTCGGGAATTAA
1 CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
* * *
100235010 CCCGGATTTGGTAACTCGCACAAATACCTTCGGGAATTAA
1 CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
* *
100235050 CCCGGATTT-GATAAATCGCACAAATGCCTTCGGCACTTAA
1 CCCGGATTTAG-TAACTCGCACAAATGCCTTCGGGACTTAA
* * * *
100235090 CCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAG
1 CCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAA
100235131 CCCGGAT
1 CCCGGAT
100235138 ACCATTCGAA
Statistics
Matches: 149, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 117 0.79
41 31 0.21
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
Found at i:100243094 original size:40 final size:40
Alignment explanation
Indices: 100243048--100243216 Score: 186
Period size: 40 Copynumber: 4.2 Consensus size: 40
100243038 GCTCGATTGT
* *
100243048 CTTCGGGACATAGCCC-GATTATAGTAATTCGCACAAATGC
1 CTTCGGGACATAACCCGGATT-TAGTAACTCGCACAAATGC
* *
100243088 CTTCGGGACTTAACCCGGATTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAACCCGGATTTAGTAACTCGCACAAATGC
*
100243128 CTTCGGGA-ATTAACCCGGATTT-GATAACTCGCACAAATAC
1 CTTCGGGACA-TAACCCGGATTTAG-TAACTCGCACAAATGC
* * *
100243168 CTTC-GGA-ATTAACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACA-TAACCCGGATTTAGTAAC-TCGCACAAATGC
100243208 CTTCGGGAC
1 CTTCGGGAC
100243217 TTAGCCTGGA
Statistics
Matches: 112, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
39 21 0.19
40 84 0.75
41 7 0.06
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (40 bp):
CTTCGGGACATAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:100243187 original size:39 final size:40
Alignment explanation
Indices: 100243076--100243215 Score: 194
Period size: 40 Copynumber: 3.5 Consensus size: 40
100243066 TTATAGTAAT
* *
100243076 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATTAACCCGGATTTGATAAC
100243116 TCGCACAAATGCCTTCGGGAATTAACCCGGATTTGATAAC
1 TCGCACAAATGCCTTCGGGAATTAACCCGGATTTGATAAC
* *
100243156 TCGCACAAATACCTTC-GGAATTAACCCGGATTT-AGTCAC
1 TCGCACAAATGCCTTCGGGAATTAACCCGGATTTGA-TAAC
* *
100243195 TTAGCACAAAAGCCTTCGGGA
1 -TCGCACAAATGCCTTCGGGA
100243216 CTTAGCCTGG
Statistics
Matches: 90, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 20 0.22
40 66 0.73
41 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGAATTAACCCGGATTTGATAAC
Found at i:100251305 original size:40 final size:40
Alignment explanation
Indices: 100251109--100251298 Score: 290
Period size: 40 Copynumber: 4.7 Consensus size: 40
100251099 CCCGGTTATA
* *
100251109 GTAATTCGCACAAATGCCTTCGGGACTTAACCCGAATTTG
1 GTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTG
*
100251149 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTG
1 GTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTG
*
100251189 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTG
1 GTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTG
* *
100251229 ATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTA
1 GTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTG
* * *
100251269 GTCACTTAGCACAAAAGCCTTCGGGACTTA
1 GTAAC-TCGCACAAATGCCTTCGGGACTTA
100251299 GCCGGATACC
Statistics
Matches: 139, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
40 117 0.84
41 22 0.16
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
GTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTG
Found at i:100257834 original size:37 final size:37
Alignment explanation
Indices: 100257781--100257880 Score: 182
Period size: 37 Copynumber: 2.7 Consensus size: 37
100257771 CGAATAGTCC
*
100257781 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
100257818 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
100257855 CCACACGTAGTCATCGGGTCTTACCC
1 CCACACGTAGTCATCGGGTCTTACCC
100257881 AGAATATATT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:100258084 original size:48 final size:48
Alignment explanation
Indices: 100258032--100258306 Score: 462
Period size: 48 Copynumber: 5.7 Consensus size: 48
100258022 ACATCTCCTA
100258032 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
100258080 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT-T
100258129 -ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
* * *
100258176 CATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATA
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
*
100258224 CATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATAT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT-T
* *
100258273 ATATATTTCACATTAGCCATTCGGCTTTACCACA
1 -CATATTTCACACTAGCCATTCGGCTTTACCACA
100258307 CACATATATA
Statistics
Matches: 213, Mismatches: 10, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
47 1 0.00
48 181 0.85
49 1 0.00
50 30 0.14
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.36
Consensus pattern (48 bp):
CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
Found at i:100263001 original size:49 final size:49
Alignment explanation
Indices: 100262897--100263111 Score: 362
Period size: 49 Copynumber: 4.4 Consensus size: 49
100262887 TTTACCACAT
* *
100262897 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
100262946 ATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 --ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
100262997 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
100263046 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
100263095 ATATAT--ACACTTTCACA
1 ATATATACACACTTTCACA
100263112 AATTTTAATA
Statistics
Matches: 160, Mismatches: 4, Indels: 4
0.95 0.02 0.02
Matches are distributed among these distances:
47 11 0.07
49 102 0.64
51 47 0.29
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:100264703 original size:47 final size:47
Alignment explanation
Indices: 100264649--100264851 Score: 273
Period size: 47 Copynumber: 4.3 Consensus size: 47
100264639 TTAGGATTTT
** * * *
100264649 ATGTGATGAATGTGAATGTGTATTTATGAGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAA
* * *
100264696 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAA
* * * *
100264743 ATGTGATGAAGGTGAACATGCACATATGTGATAAGGCCGAATAGTC-A
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAAT-GGCAA
*
100264790 ATGTGATGAATGTGAACATGCATATATGAGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAA
100264837 ATGTGATGAATGTGA
1 ATGTGATGAATGTGA
100264852 CAGCCTTAAA
Statistics
Matches: 137, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
46 2 0.01
47 133 0.97
48 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAA
Found at i:100264749 original size:22 final size:21
Alignment explanation
Indices: 100264722--100264796 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 21
100264712 CATGCATATG
100264722 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAAT-GCCAA
*
100264744 TGTGATGAAGG-TGAACATGCACATA
1 TGTGAT-AAGGCCG-A-ATGC-CA-A
*
100264769 TGTGATAAGGCCGAATAGTCAA
1 TGTGATAAGGCCGAAT-GCCAA
100264791 TGTGAT
1 TGTGAT
100264797 GAATGTGAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
22 14 0.33
23 11 0.26
24 10 0.23
25 8 0.19
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.24
Consensus pattern (21 bp):
TGTGATAAGGCCGAATGCCAA
Found at i:100264771 original size:25 final size:25
Alignment explanation
Indices: 100264696--100264817 Score: 73
Period size: 25 Copynumber: 5.1 Consensus size: 25
100264686 CGAATGGCAA
* *
100264696 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAAGGTGAACATGCACAT
* *
100264721 GTGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAAGG-TGAACAT-GCACAT
100264743 ATGTGATGAAGGTGAACATGCACAT
1 ATGTGATGAAGGTGAACATGCACAT
* * *
100264768 ATGTGAT-AAGGCCGAATA-G-TCA-
1 ATGTGATGAAGG-TGAACATGCACAT
* *
100264790 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAAGGTGAACATGCACAT
100264815 ATG
1 ATG
100264818 AGCTAAGGCC
Statistics
Matches: 71, Mismatches: 14, Indels: 24
0.65 0.13 0.22
Matches are distributed among these distances:
22 18 0.25
23 16 0.23
24 16 0.23
25 21 0.30
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.26
Consensus pattern (25 bp):
ATGTGATGAAGGTGAACATGCACAT
Found at i:100269823 original size:71 final size:71
Alignment explanation
Indices: 100269737--100269900 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
100269727 CGATTTGTCT
100269737 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
100269802 CTTTCA
66 CTTTCA
100269808 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
100269873 CTTTCA
66 CTTTCA
100269879 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
100269901 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:100269938 original size:71 final size:70
Alignment explanation
Indices: 100269737--100269934 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
100269727 CGATTTGTCT
* * * *
100269737 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
100269802 CTTTCA
65 CTTTCA
* * * *
100269808 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
100269873 CTTTCA
65 CTTTCA
* *
100269879 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
100269935 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:100272186 original size:40 final size:39
Alignment explanation
Indices: 100272052--100272229 Score: 241
Period size: 39 Copynumber: 4.5 Consensus size: 39
100272042 GGACTAATAT
* * * *
100272052 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGC
*
100272091 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGC
100272130 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-C
* * *
100272170 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AACCCGGGTTAAG-C
*
100272210 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTTGTGCGAGT
100272230 CGTTATATCC
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 73 0.57
40 46 0.36
41 9 0.07
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGC
Found at i:100276333 original size:40 final size:40
Alignment explanation
Indices: 100276274--100276442 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
100276264 CGGGACTTTA
* * *
100276274 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
100276314 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
100276354 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
100276394 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
100276434 CCCGGATAT
1 CCCGGATAT
100276443 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:100283741 original size:40 final size:40
Alignment explanation
Indices: 100283682--100283850 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
100283672 CGGGACTTTA
* * *
100283682 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
100283722 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
100283762 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
100283802 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
100283842 CCCGGATAT
1 CCCGGATAT
100283851 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:100290054 original size:78 final size:80
Alignment explanation
Indices: 100289908--100290169 Score: 311
Period size: 78 Copynumber: 3.3 Consensus size: 80
100289898 TTGAATGATG
* * * ** * *
100289908 TCCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTAAC-ATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAAATCCGGGTTAAGACCCGAAGGCATT
*
100289971 CGTGCGAGTTAATAAA
65 CGTGCGAGTTACTAAA
* *
100289987 TCCGGGTTAAG-CCCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTTAAG-CCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTTAAGACCCGAAGGCATTC
100290050 GTGCGAGTTACTAAA
66 GTGCGAGTTACTAAA
* * * *
100290065 TCCTGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTTAAGACCCGAAGGCATTC
100290129 GTGCGAGTTACTATAA
66 GTGCGAGTTACTA-AA
* **
100290145 -CCGGGGTTTGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
100290170 AGCGAGTCGT
Statistics
Matches: 159, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
78 85 0.53
79 58 0.36
80 16 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTTAAGACCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:100290133 original size:40 final size:39
Alignment explanation
Indices: 100289960--100290176 Score: 294
Period size: 39 Copynumber: 5.5 Consensus size: 39
100289950 GGACTAAGAT
* * *
100289960 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGC
*
100289999 CCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTTAAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGC
* *
100290038 CCGAAGGCATTTGTGCGAGTTACTAAATCCTGGCTAAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGC
*
100290077 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-C
* *
100290117 CCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGGTT-TGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGGTTAAG-C
*
100290157 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTTGTGCGAGT
100290177 CGTTATATCC
Statistics
Matches: 161, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 106 0.66
40 48 0.30
41 7 0.04
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGC
Found at i:100291600 original size:22 final size:22
Alignment explanation
Indices: 100291573--100291790 Score: 94
Period size: 22 Copynumber: 9.4 Consensus size: 22
100291563 CATGCATATG
*
100291573 TGTGATAAGGCCGGATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
*
100291595 TGTGATGAAGG-TGAACAT-GCACATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
100291620 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
100291642 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
100291667 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
100291689 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
100291712 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
* *
100291736 TGTGATGAATG-TGAACAT-GCGCATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
100291761 TGTCATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
100291783 TGTGATAA
1 TGTGATAA
100291791 ATGTGAACAT
Statistics
Matches: 147, Mismatches: 19, Indels: 60
0.65 0.08 0.27
Matches are distributed among these distances:
22 40 0.27
23 37 0.25
24 38 0.26
25 32 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:100291622 original size:25 final size:24
Alignment explanation
Indices: 100291590--100291809 Score: 91
Period size: 23 Copynumber: 9.4 Consensus size: 24
100291580 AGGCCGGATG
100291590 GCCA-ATGTGATGAAGGTGAACAT
1 GCCATATGTGATGAAGGTGAACAT
*
100291613 GCACATATGTGAT-AAGGCCG-A-AT
1 GC-CATATGTGATGAAGG-TGAACAT
*
100291636 GGCCA-ATGTGATGAATGTGAACAT
1 -GCCATATGTGATGAAGGTGAACAT
* *
100291660 GCATATATGTGAT-AAGGCCG-A-AT
1 GC-CATATGTGATGAAGG-TGAACAT
*
100291683 GGCCA-ATGTGATGAATGTGAACAT
1 -GCCATATGTGATGAAGGTGAACAT
*
100291707 G-CATATGTG-TGATAAGGCCG-A-AT
1 GCCATATGTGATG--AAGG-TGAACAT
*
100291730 GGCCA-ATGTGATGAATGTGAACAT
1 -GCCATATGTGATGAAGGTGAACAT
* *
100291754 GCGCATATGTCAT-AAGGCCG-A-AT
1 GC-CATATGTGATGAAGG-TGAACAT
* *
100291777 GGCCA-ATGTGATAAATGTGAACAT
1 -GCCATATGTGATGAAGGTGAACAT
100291801 G-CATATGTG
1 GCCATATGTG
100291810 TAATAAGGCA
Statistics
Matches: 147, Mismatches: 19, Indels: 62
0.64 0.08 0.27
Matches are distributed among these distances:
22 30 0.20
23 47 0.32
24 42 0.29
25 28 0.19
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (24 bp):
GCCATATGTGATGAAGGTGAACAT
Found at i:100291624 original size:47 final size:47
Alignment explanation
Indices: 100291552--100291872 Score: 482
Period size: 47 Copynumber: 6.8 Consensus size: 47
100291542 GGGTGTTACA
* *
100291552 ATGAATGTGAACATGCATATGTGTGATAAGGCCGGATGGCCAATGTG
1 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
* *
100291599 ATGAAGGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
100291646 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
*
100291693 ATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
** *
100291740 ATGAATGTGAACATGCGCATATGTCATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
* * * *
100291787 ATAAATGTGAACATGCATATGTGTAATAAGGCAGAATGGCCAATGTG
1 ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
* * * *
100291834 ATGAATGTGGAA-GTGTATATATGTGGTAAAGCCGAATGG
1 ATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGG
100291873 TTAATGCGAA
Statistics
Matches: 248, Mismatches: 25, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
47 245 0.99
48 3 0.01
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.25
Consensus pattern (47 bp):
ATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
Found at i:100291908 original size:46 final size:46
Alignment explanation
Indices: 100291852--100291942 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
100291842 GGAAGTGTAT
* * * **
100291852 ATATGTGGTAAAGCCGAATGGTTAATGCGAAATGTGTATGAGATGG
1 ATATGCGGTAAAGCCAAATGGCTAATGCGAAATACGTATGAGATGG
* *
100291898 ATATGCGGTAAAGCCAAATGGCTAATGTGAGATACGTATGAGATG
1 ATATGCGGTAAAGCCAAATGGCTAATGCGAAATACGTATGAGATG
100291943 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGCGGTAAAGCCAAATGGCTAATGCGAAATACGTATGAGATGG
Found at i:100296793 original size:29 final size:29
Alignment explanation
Indices: 100296759--100296837 Score: 113
Period size: 29 Copynumber: 2.7 Consensus size: 29
100296749 AAACACGTCA
* * * *
100296759 GAAAAGGAAAACCTTTTTGGTAAACTTAT
1 GAAAAGGAAAGCCTTTGTGGCAAACCTAT
100296788 GAAAAGGAAAGCCTTTGTGGCAAACCTAT
1 GAAAAGGAAAGCCTTTGTGGCAAACCTAT
*
100296817 AAAAAGGAAAGCCTTTGTGGC
1 GAAAAGGAAAGCCTTTGTGGC
100296838 GAGTATTGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24
Consensus pattern (29 bp):
GAAAAGGAAAGCCTTTGTGGCAAACCTAT
Found at i:100296996 original size:59 final size:58
Alignment explanation
Indices: 100296893--100297234 Score: 389
Period size: 59 Copynumber: 5.8 Consensus size: 58
100296883 TGCGGCAAGC
* * *
100296893 ACTGAATGAAAAGGATGCCTTTATGGAAAATCTCTTAAAGGAAAGCCTTTATGGCTAGA
1 ACTGAATGAAAAGGATGCCTTTGTGGAAAATCT-TTAAAGGAAAGCCTTTATGGCGAGT
*
100296952 ACTGAATGAAAAGGATGCCTTTGTGAAAAATCTTTGAATA-GAAAGCCTTTATGGCGAGT
1 ACTGAATGAAAAGGATGCCTTTGTGGAAAATCTTT-AA-AGGAAAGCCTTTATGGCGAGT
* * * * * *
100297011 TCTGAATGAAAAGGATGGCTTTGTGGCAAATCTCTTAAAGGAAAGCCCTTATGACAAGT
1 ACTGAATGAAAAGGATGCCTTTGTGGAAAATCT-TTAAAGGAAAGCCTTTATGGCGAGT
* * * * *
100297070 ACTAAATGAAAATGATGCCTTTTGTGGAAAATCATTTAAAAGAAAACCTTTGTGGCGAGT
1 ACTGAATGAAAAGGATGCC-TTTGTGGAAAATC-TTTAAAGGAAAGCCTTTATGGCGAGT
* * * * * *
100297130 ATTGAATGAAAATGATTCCTTTGTGGAAAATCTTTAAAAGGAAAGCGTTTTTGGTGAGT
1 ACTGAATGAAAAGGATGCCTTTGTGGAAAATCTTT-AAAGGAAAGCCTTTATGGCGAGT
* **
100297189 ACTGAATGAAAATGATGCCTTTGTGGCTAATCTTTGAAAGGAAAGC
1 ACTGAATGAAAAGGATGCCTTTGTGGAAAATCTTT-AAAGGAAAGC
100297235 TTTCGTGGCT
Statistics
Matches: 241, Mismatches: 35, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
58 6 0.02
59 184 0.76
60 50 0.21
61 1 0.00
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.30
Consensus pattern (58 bp):
ACTGAATGAAAAGGATGCCTTTGTGGAAAATCTTTAAAGGAAAGCCTTTATGGCGAGT
Found at i:100297152 original size:119 final size:118
Alignment explanation
Indices: 100296894--100297232 Score: 423
Period size: 119 Copynumber: 2.9 Consensus size: 118
100296884 GCGGCAAGCA
* * *
100296894 CTGAATGAAAAGGATGCCTTTATGGAAAATCTCTTAAAGGAAAGCCTTTATGGCTAGAACTGAAT
1 CTGAATGAAAAGGATGCCTTTGTGGAAAATCTCTTAAAGGAAAGCCTTTATGGCAAGTACTGAAT
* * * *
100296959 GAAAAGGATGCCTTTGTGAAAAATCTTTGAATAGAAAGCCTTTATGGCGAGTT
66 GAAAATGATGCCTTTGTGGAAAATCTTTGAAAAGAAAACCTTTATGGCGAGTT
* * * * *
100297012 CTGAATGAAAAGGATGGCTTTGTGGCAAATCTCTTAAAGGAAAGCCCTTATGACAAGTACTAAAT
1 CTGAATGAAAAGGATGCCTTTGTGGAAAATCTCTTAAAGGAAAGCCTTTATGGCAAGTACTGAAT
*
100297077 GAAAATGATGCCTTTTGTGGAAAATCATTT-AAAAGAAAACCTTTGTGGCGAGTAT
66 GAAAATGATGCC-TTTGTGGAAAATC-TTTGAAAAGAAAACCTTTATGGCGAGT-T
* * * * **
100297132 -TGAATGAAAATGATTCCTTTGTGGAAAATCT-TTAAAAGGAAAGCGTTTTTGGTGAGTACTGAA
1 CTGAATGAAAAGGATGCCTTTGTGGAAAATCTCTT-AAAGGAAAGCCTTTATGGCAAGTACTGAA
** *
100297195 TGAAAATGATGCCTTTGTGGCTAATCTTTGAAAGGAAA
65 TGAAAATGATGCCTTTGTGGAAAATCTTTGAAAAGAAA
100297233 GCTTTCGTGG
Statistics
Matches: 189, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
117 3 0.02
118 88 0.47
119 94 0.50
120 4 0.02
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.30
Consensus pattern (118 bp):
CTGAATGAAAAGGATGCCTTTGTGGAAAATCTCTTAAAGGAAAGCCTTTATGGCAAGTACTGAAT
GAAAATGATGCCTTTGTGGAAAATCTTTGAAAAGAAAACCTTTATGGCGAGTT
Found at i:100297154 original size:178 final size:177
Alignment explanation
Indices: 100296888--100297234 Score: 448
Period size: 178 Copynumber: 2.0 Consensus size: 177
100296878 AACTTTGCGG
* * * *
100296888 CAAGCACTGAATGAAAAGGATGCCTTTATGGAAAATCTCTTAAAGGAAAGCCTTTATGGCTAGAA
1 CAAGCACTAAATGAAAAGGATGCCTTTATGGAAAATCTCTTAAAAGAAAACCTTTATGGCGAGAA
* *
100296953 CTGAATGAAAAGGATGCCTTTGTGAAAAATCTTTGAATA-GAAAGCCTTTATGGCGAGTTCTGAA
66 CTGAATGAAAAGGATGCCTTTGTGAAAAATCTTT-AAAAGGAAAGCCTTTATGGCGAGTACTGAA
*
100297017 TGAAAAGGATGGCTTTGTGGCAAATCTCTT-AAAGGAAAGCCCTTATGA
130 TGAAAAGGATGCCTTTGTGGCAAATCT-TTGAAAGGAAAGCCCTTATGA
* * * *
100297065 CAAGTACTAAATGAAAATGATGCCTTTTGTGGAAAATCAT-TTAAAAGAAAACCTTTGTGGCGAG
1 CAAGCACTAAATGAAAAGGATGCC-TTTATGGAAAATC-TCTTAAAAGAAAACCTTTATGGCGAG
* * * * * * * *
100297129 TATTGAATGAAAATGATTCCTTTGTGGAAAATCTTTAAAAGGAAAGCGTTTTTGGTGAGTACTGA
64 AACTGAATGAAAAGGATGCCTTTGTGAAAAATCTTTAAAAGGAAAGCCTTTATGGCGAGTACTGA
* *
100297194 ATGAAAATGATGCCTTTGTGGCTAATCTTTGAAAGGAAAGC
129 ATGAAAAGGATGCCTTTGTGGCAAATCTTTGAAAGGAAAGC
100297235 TTTCGTGGCT
Statistics
Matches: 145, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
177 26 0.18
178 118 0.81
179 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.29
Consensus pattern (177 bp):
CAAGCACTAAATGAAAAGGATGCCTTTATGGAAAATCTCTTAAAAGAAAACCTTTATGGCGAGAA
CTGAATGAAAAGGATGCCTTTGTGAAAAATCTTTAAAAGGAAAGCCTTTATGGCGAGTACTGAAT
GAAAAGGATGCCTTTGTGGCAAATCTTTGAAAGGAAAGCCCTTATGA
Found at i:100297271 original size:29 final size:27
Alignment explanation
Indices: 100297206--100297271 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 27
100297196 GAAAATGATG
100297206 CCTTTGTGGCTAATCTTTGAAAGGAAA
1 CCTTTGTGGCTAATCTTTGAAAGGAAA
* *
100297233 GCTTTCGTGGCTACCTCTGTT-AAAGGAACA
1 CCTTT-GTGGCTA-ATCT-TTGAAAGGAA-A
100297263 CCTTTGTGG
1 CCTTTGTGG
100297272 TGCAGTCTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
27 4 0.12
28 7 0.22
29 14 0.44
30 7 0.22
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (27 bp):
CCTTTGTGGCTAATCTTTGAAAGGAAA
Found at i:100299793 original size:41 final size:41
Alignment explanation
Indices: 100299748--100299865 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
100299738 TGAAAGATAA
100299748 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
100299789 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
100299819 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
100299860 ATGTAG
1 ATGTAG
100299866 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:100299804 original size:71 final size:71
Alignment explanation
Indices: 100299716--100299879 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
100299706 GAGATGTATC
100299716 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
100299781 AGGACA
66 AGGACA
100299787 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
100299852 AGGACA
66 AGGACA
100299858 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
100299880 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:100307503 original size:28 final size:28
Alignment explanation
Indices: 100307438--100307538 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
100307428 ATAGTGAATC
*
100307438 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
100307467 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
100307495 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
100307525 CGCACACTTAGTGC
1 CGCACACTTAGTGC
100307539 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:100315474 original size:28 final size:28
Alignment explanation
Indices: 100315409--100315509 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
100315399 ATAGTGAATC
*
100315409 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
100315438 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
100315466 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
100315496 CGCACACTTAGTGC
1 CGCACACTTAGTGC
100315510 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:100318572 original size:41 final size:41
Alignment explanation
Indices: 100318527--100318644 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
100318517 TGAAAGATAA
100318527 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
100318568 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
100318598 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
100318639 ATGTAG
1 ATGTAG
100318645 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:100318583 original size:71 final size:71
Alignment explanation
Indices: 100318495--100318658 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
100318485 GAGATGTATC
100318495 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
100318560 AGGACA
66 AGGACA
100318566 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
100318631 AGGACA
66 AGGACA
100318637 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
100318659 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:100321753 original size:2 final size:2
Alignment explanation
Indices: 100321746--100321778 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
100321736 AATTACAAAA
100321746 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
100321779 AACTAATGGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:100323164 original size:8 final size:9
Alignment explanation
Indices: 100323133--100323161 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
100323123 AATTTTTTTA
100323133 TTTAAAATT
1 TTTAAAATT
100323142 TTTAAAATT
1 TTTAAAATT
100323151 TTTAAAATT
1 TTTAAAATT
100323160 TT
1 TT
100323162 AAAGTAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (9 bp):
TTTAAAATT
Found at i:100333060 original size:3 final size:3
Alignment explanation
Indices: 100333054--100333097 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
100333044 ATAGTAGTAG
100333054 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
100333098 CAGGAGTTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:100335206 original size:10 final size:9
Alignment explanation
Indices: 100335190--100335244 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
100335180 AAATAAAAAA
100335190 TAAAATTAT
1 TAAAATTAT
100335199 TAATAATTA-
1 TAA-AATTAT
100335208 TAAGAAGTTA-
1 TAA-AA-TTAT
*
100335218 TAAAAATAT
1 TAAAATTAT
100335227 TAAAATTAT
1 TAAAATTAT
100335236 TAAATATTA
1 TAAA-ATTA
100335245 ACAAAGGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
8 2 0.05
9 22 0.56
10 15 0.38
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (9 bp):
TAAAATTAT
Found at i:100335379 original size:13 final size:13
Alignment explanation
Indices: 100335361--100335387 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
100335351 TCTAGATTTC
100335361 TTAAATAATTATT
1 TTAAATAATTATT
100335374 TTAAATAATTATT
1 TTAAATAATTATT
100335387 T
1 T
100335388 ATTTATTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTAAATAATTATT
Found at i:100335391 original size:17 final size:16
Alignment explanation
Indices: 100335369--100335419 Score: 68
Period size: 17 Copynumber: 3.1 Consensus size: 16
100335359 TCTTAAATAA
100335369 TTATTTTAAATAATTAT
1 TTATTTTAAA-AATTAT
*
100335386 TTATTTATTAAAATTAT
1 TTATTT-TAAAAATTAT
100335403 TTATTTTAAAAA-TAT
1 TTATTTTAAAAATTAT
100335418 TT
1 TT
100335420 TTTGATGTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 5 0.16
16 5 0.16
17 18 0.58
18 3 0.10
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTATTTTAAAAATTAT
Found at i:100338566 original size:32 final size:32
Alignment explanation
Indices: 100338522--100338615 Score: 84
Period size: 32 Copynumber: 2.8 Consensus size: 32
100338512 TCAAGCCCAT
*
100338522 TGGGCCTAAGCCC-ATTCAGATAACAGTGATAC
1 TGGGCC-AAGCCCTATTCAGATAACAGTGAAAC
* * *
100338554 TGGGCCAGAGCCCTTTTCAGATTACA-TTAAAC
1 TGGGCCA-AGCCCTATTCAGATAACAGTGAAAC
*
100338586 TGGGCCTTAGCCCCTTATTCAGATAACAGT
1 TGGGCC-AAG-CCC-TATTCAGATAACAGT
100338616 ATAGCCCATA
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
31 1 0.02
32 23 0.47
33 13 0.27
34 11 0.22
35 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (32 bp):
TGGGCCAAGCCCTATTCAGATAACAGTGAAAC
Found at i:100347725 original size:39 final size:40
Alignment explanation
Indices: 100347625--100347815 Score: 187
Period size: 40 Copynumber: 4.8 Consensus size: 40
100347615 CAAATGATGT
** * *
100347625 CCGGGCTAAGTCCCGAAGGC-TTTATGCTAAGTGACT-ATA
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAATA
* * *
100347664 TCTGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAATA
*
100347705 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA-A
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAATA
100347743 CCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAT-A
** * *
100347784 CCGGGCTCTGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
100347816 CGTTATATCC
Statistics
Matches: 127, Mismatches: 16, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
39 36 0.28
40 82 0.65
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAATA
Found at i:100347760 original size:79 final size:80
Alignment explanation
Indices: 100347624--100347815 Score: 230
Period size: 79 Copynumber: 2.4 Consensus size: 80
100347614 TCAAATGATG
* * * * *
100347624 TCCGGGCTAAGTCCCGAAGGC-TTTATGCTAAGTGACTATATCTGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
100347688 CGTGCGAGTTACTA-A
65 CGTGCGAGTTACTATA
* *
100347703 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGCTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
100347766 TCGTGCGAGTTACTATA
64 TCGTGCGAGTTACTATA
* ** *
100347783 ACCGGGCTCTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
100347816 CGTTATATCC
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.60
80 38 0.39
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTACTATA
Found at i:100354045 original size:49 final size:49
Alignment explanation
Indices: 100353989--100354084 Score: 147
Period size: 49 Copynumber: 2.0 Consensus size: 49
100353979 TGGGGGAGAG
* *
100353989 TTGTGACAGGCCAAAATTGACCCTAGTCGGGAAGTGGTTTCGGGACCGC
1 TTGTGACAGCCCAAAATTAACCCTAGTCGGGAAGTGGTTTCGGGACCGC
* * *
100354038 TTGTGACATCCCTAATTTAACCCTAGTCGGGAAGTGGTTTCGGGACC
1 TTGTGACAGCCCAAAATTAACCCTAGTCGGGAAGTGGTTTCGGGACC
100354085 ACAAAACTGG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (49 bp):
TTGTGACAGCCCAAAATTAACCCTAGTCGGGAAGTGGTTTCGGGACCGC
Done.