Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 322 of 433
Found at i:100735489 original size:22 final size:21
Alignment explanation
Indices: 100735452--100735535 Score: 69
Period size: 22 Copynumber: 3.9 Consensus size: 21
100735442 ACCACCCTTA
* *
100735452 AACCATAATCCCTAAACCCAT
1 AACCATAAACCTTAAACCCAT
***
100735473 AATCCATAAACCTTAAAATAAT
1 AA-CCATAAACCTTAAACCCAT
* *
100735495 AACTCATAAACATTAAACCCTT
1 AAC-CATAAACCTTAAACCCAT
* *
100735517 AACCATATACCGTAAACCC
1 AACCATAAACCTTAAACCC
100735536 TAAACTATAA
Statistics
Matches: 48, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
21 16 0.33
22 32 0.67
ACGTcount: A:0.46, C:0.30, G:0.01, T:0.23
Consensus pattern (21 bp):
AACCATAAACCTTAAACCCAT
Found at i:100736315 original size:119 final size:112
Alignment explanation
Indices: 100736195--100736405 Score: 271
Period size: 115 Copynumber: 1.8 Consensus size: 112
100736185 ATGTTGATAT
*
100736195 TTTAAG-TTATATTTGCATGAAATATTATTGTATATATATTATGTAATTTATATTGTTATATTCA
1 TTTAAGATTATATTTGCATGAAATATTA----ATATATATTATGTAATTTATATCGTTAT-TT-A
* * *
100736259 TTATTTTCTATGTTGTATTTTGCATGAAATGTTAATGTATGTACATTTATGTTA
60 TCATTTTCTATATTATA-TTTGCATGAAATGTTAATGTATGTACATTTATGTTA
* * * *
100736313 TTTATGATTATATTTGCATGAAATGTTAATGTATATTATGTAATTTATGTCGTTATTTATCATTT
1 TTTAAGATTATATTTGCATGAAATATTAATATATATTATGTAATTTATATCGTTATTTATCATTT
*
100736378 TCTATATTATATTTGCATGAAGTGTTAA
66 TCTATATTATATTTGCATGAAATGTTAA
100736406 AATATGTATC
Statistics
Matches: 83, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
112 16 0.19
113 15 0.18
114 2 0.02
115 25 0.30
118 5 0.06
119 20 0.24
ACGTcount: A:0.30, C:0.05, G:0.12, T:0.53
Consensus pattern (112 bp):
TTTAAGATTATATTTGCATGAAATATTAATATATATTATGTAATTTATATCGTTATTTATCATTT
TCTATATTATATTTGCATGAAATGTTAATGTATGTACATTTATGTTA
Found at i:100739826 original size:14 final size:15
Alignment explanation
Indices: 100739801--100739843 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
100739791 AAAATTACAG
*
100739801 AGAGAGACAGAGAGAT
1 AGAGAGAGAGAGAG-T
100739817 AGAGAGAGAGAGAGT
1 AGAGAGAGAGAGAGT
*
100739832 A-AGAGAAAGAGA
1 AGAGAGAGAGAGA
100739844 AAACTTGGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 10 0.40
15 2 0.08
16 13 0.52
ACGTcount: A:0.53, C:0.02, G:0.40, T:0.05
Consensus pattern (15 bp):
AGAGAGAGAGAGAGT
Found at i:100742488 original size:26 final size:26
Alignment explanation
Indices: 100742452--100742503 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
100742442 ACGGAGAGAA
100742452 AGGTCATGGGAAGAATTGATATCCTT
1 AGGTCATGGGAAGAATTGATATCCTT
100742478 AGGTCATGGGAAGAATTGATATCCTT
1 AGGTCATGGGAAGAATTGATATCCTT
100742504 TTGATGATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.31
Consensus pattern (26 bp):
AGGTCATGGGAAGAATTGATATCCTT
Found at i:100747784 original size:53 final size:53
Alignment explanation
Indices: 100747721--100747828 Score: 207
Period size: 53 Copynumber: 2.0 Consensus size: 53
100747711 GGATGGAAGA
100747721 GTAAAGACGTCCGAAATAGGATTCATTTTCATAAACATTTTTCATCATAATAT
1 GTAAAGACGTCCGAAATAGGATTCATTTTCATAAACATTTTTCATCATAATAT
*
100747774 GTAAAGACGTCTGAAATAGGATTCATTTTCATAAACATTTTTCATCATAATAT
1 GTAAAGACGTCCGAAATAGGATTCATTTTCATAAACATTTTTCATCATAATAT
100747827 GT
1 GT
100747829 CTATTTAGGA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (53 bp):
GTAAAGACGTCCGAAATAGGATTCATTTTCATAAACATTTTTCATCATAATAT
Found at i:100748080 original size:90 final size:90
Alignment explanation
Indices: 100747935--100748892 Score: 1347
Period size: 90 Copynumber: 10.7 Consensus size: 90
100747925 GTAGATCACC
* *
100747935 GATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGTC-GATC-AAGGATAGCAGATCTGGCATT
1 GATGACAGATTTGGCGTCTCTGTATTAGACGGGGAG-CAGATCGAA-GATAGCAGATCTGACATT
*
100747998 CATGTGTTTACATCGAAGCAGATCGAA
64 CGTGTGTTTACATCGAAGCAGATCGAA
* * *
100748025 GATGACAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATCGAGGATAGTAGATCTGACATTCG
1 GATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
* * *
100748090 TATGTTTACATTGAAGCAGATCTAA
66 TGTGTTTACATCGAAGCAGATCGAA
* * * * ** * *
100748115 TATGATAGATTTTGCGTCTCTATATTAGATAGGGAGTAGATCGAAGATAGCAGATCTGACATTCA
1 GATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
100748180 TGTGTTTACATCGAAGCAGATCGAA
66 TGTGTTTACATCGAAGCAGATCGAA
* *
100748205 GATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCAAAGATAGCAGATCTGACATTCG
1 GATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
* *
100748270 TGTGTTTACATCGACGAAGATCGAA
66 TGTGTTTACATCGAAGCAGATCGAA
* *
100748295 GATGACAGATTTGGAGTCTCTGTATTAGACGGAGAGCAGATCGAAGATAGCAGATCTGACATTC-
1 GATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
* *
100748359 ---GTATA-GT-GAAGCAGATCGAA
66 TGTGTTTACATCGAAGCAGATCGAA
* * *
100748379 GATTACGGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
1 GATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
* * *
100748444 TGTGTTTATATCGAAGTAGATCAAA
66 TGTGTTTACATCGAAGCAGATCGAA
* * *
100748469 GATGATAGATTTGGCGTCTCTGTATTAGACGGGAAGCGGATCGAAGATAGCAGATCTGACATTCG
1 GATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
* * *
100748534 AGCGTTTACATCGAAGCAAATCGAA
66 TGTGTTTACATCGAAGCAGATCGAA
*
100748559 GATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCGGATCGAAGATAGCAGATCTGACATTCG
1 GATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
* *
100748624 TGTATTTACATCGAAGTAGATCGAA
66 TGTGTTTACATCGAAGCAGATCGAA
* * *
100748649 GATGACAGATTTGGCTTCTCTGTATTAGACGGGGAGCAAATCGTAGATAGCAGATCTGACATTCG
1 GATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
* *
100748714 GGTGTTTACATCGAAGCAGATCAAA
66 TGTGTTTACATCGAAGCAGATCGAA
* * * * *
100748739 GATGACAGATTTGGAGTCTCTGTATTAGACGGGGAGCAGATCGAAGTTAGTAGATCTAACATTCA
1 GATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
* *
100748804 TGTGTTTACATCAAAGCAAATCGAA
66 TGTGTTTACATCGAAGCAGATCGAA
* * *
100748829 GATTACAGATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCGAAGATAGCAGATTTGACATTC
1 GATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTC
100748893 TTGAGTTACA
Statistics
Matches: 766, Mismatches: 94, Indels: 16
0.87 0.11 0.02
Matches are distributed among these distances:
84 70 0.09
85 1 0.00
86 4 0.01
88 4 0.01
89 2 0.00
90 684 0.89
91 1 0.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (90 bp):
GATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCG
TGTGTTTACATCGAAGCAGATCGAA
Found at i:100748778 original size:444 final size:447
Alignment explanation
Indices: 100747939--100748892 Score: 1389
Period size: 444 Copynumber: 2.1 Consensus size: 447
100747929 ATCACCGATG
*
100747939 ACAGATTTGGCGTCTCTGTATTAGACAGGGAGTC-GATC-AAGGATAGCAGATCTGGCATTCATG
1 ACAGATTTGGCGTCTCTGTATTAGACAGGGAG-CAGATCGAA-GATAGCAGATCTGACATTCATG
* *
100748002 TGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATC
64 TGTTTACATCGAAGCAGATCAAAGATGACAGATTTGGCGTCTCTATATTAGACGGGAAGCAGATC
* * * * * * * * *
100748067 GAGGATAGTAGATCTGACATTCGTATGTTTACATTGAAGCAGATCTAATATGATAGATTTTGCGT
129 GAAGATAGCAGATCTGACATTCGTACGTTTACATCGAAGCAAATCGAAGATGACAGATTTGGCGT
* * *
100748132 CTCTATATTAGATAGGGAGTAGATCGAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAGC
194 CTCTATATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTATTTACATCGAAGC
*
100748197 AGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCAAAGATAGCAGATCT
259 AGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAAATCAAAGATAGCAGATCT
* * *
100748262 GACATTCGTGTGTTTACATCGACGAAGATCGAAGATGACAGATTTGGAGTCTCTGTATTAGACGG
324 GACATTCGGGTGTTTACATCGAAGAAGATCAAAGATGACAGATTTGGAGTCTCTGTATTAGACGG
* * * *
100748327 AGAGCAGATCGAAGATAGCAGATCTGACATTC-GTATA-GT-GAAGCAGATCGAAGATT
389 AGAGCAGATCGAAGATAGCAGATCTAACATTCTGTATACATCAAAGCAAATCGAAGATT
* *
100748383 ACGGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTG
1 ACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTG
* * * * *
100748448 TTTATATCGAAGTAGATCAAAGATGATAGATTTGGCGTCTCTGTATTAGACGGGAAGCGGATCGA
66 TTTACATCGAAGCAGATCAAAGATGACAGATTTGGCGTCTCTATATTAGACGGGAAGCAGATCGA
100748513 AGATAGCAGATCTGACATTCG-AGCGTTTACATCGAAGCAAATCGAAGATGACAGATTTGGCGTC
131 AGATAGCAGATCTGACATTCGTA-CGTTTACATCGAAGCAAATCGAAGATGACAGATTTGGCGTC
* * * * *
100748577 TCTGTATTAGACGGGGAGCGGATCGAAGATAGCAGATCTGACATTCGTGTATTTACATCGAAGTA
195 TCTATATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTATTTACATCGAAGCA
* * **
100748642 GATCGAAGATGACAGATTTGGCTTCTCTGTATTAGACGGGGAGCAAATCGTAGATAGCAGATCTG
260 GATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAAATCAAAGATAGCAGATCTG
* *
100748707 ACATTCGGGTGTTTACATCGAAGCAGATCAAAGATGACAGATTTGGAGTCTCTGTATTAGACGGG
325 ACATTCGGGTGTTTACATCGAAGAAGATCAAAGATGACAGATTTGGAGTCTCTGTATTAGACGGA
* * *
100748772 GAGCAGATCGAAGTTAGTAGATCTAACATTCATGTGTTTACATCAAAGCAAATCGAAGATT
390 GAGCAGATCGAAGATAGCAGATCTAACATTC---TGTATACATCAAAGCAAATCGAAGATT
** *
100748833 ACAGATTTGGCGTCTCTGTATTAGATGGGGAGCAGATCGAAGATAGCAGATTTGACATTC
1 ACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTC
100748893 TTGAGTTACA
Statistics
Matches: 453, Mismatches: 48, Indels: 12
0.88 0.09 0.02
Matches are distributed among these distances:
443 2 0.00
444 373 0.82
445 2 0.00
448 4 0.01
449 1 0.00
450 71 0.16
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (447 bp):
ACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTG
TTTACATCGAAGCAGATCAAAGATGACAGATTTGGCGTCTCTATATTAGACGGGAAGCAGATCGA
AGATAGCAGATCTGACATTCGTACGTTTACATCGAAGCAAATCGAAGATGACAGATTTGGCGTCT
CTATATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTATTTACATCGAAGCAG
ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAAATCAAAGATAGCAGATCTGA
CATTCGGGTGTTTACATCGAAGAAGATCAAAGATGACAGATTTGGAGTCTCTGTATTAGACGGAG
AGCAGATCGAAGATAGCAGATCTAACATTCTGTATACATCAAAGCAAATCGAAGATT
Found at i:100750065 original size:13 final size:14
Alignment explanation
Indices: 100750039--100750068 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
100750029 TTTATTATTT
100750039 ATATATTGTTTTAA
1 ATATATTGTTTTAA
100750053 ATATATT-TTTTAA
1 ATATATTGTTTTAA
100750066 ATA
1 ATA
100750069 CCTCATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (14 bp):
ATATATTGTTTTAA
Found at i:100752456 original size:67 final size:67
Alignment explanation
Indices: 100752336--100752466 Score: 185
Period size: 67 Copynumber: 2.0 Consensus size: 67
100752326 CCTTGCTAGT
* *
100752336 GAGGTAGTTGTCTGAGGTATATCATCGTTTACATAAACATCAGAACAGTTCAAAGACATCACGTA
1 GAGGTAGTTGTCTGAGGTATATCATCGTTTACACAAACATCAGAACAGCTCAAAGACATCACGTA
100752401 GG
66 GG
* **
100752403 GAGGTAGTTGTGTGAGGTATATCATCGTTTACACAAA-AGGT-AGAATGGCTCAAAGACATCACG
1 GAGGTAGTTGTCTGAGGTATATCATCGTTTACACAAACA--TCAGAACAGCTCAAAGACATCACG
100752466 T
64 T
100752467 CTACTGGTCA
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
66 1 0.02
67 55 0.96
68 1 0.02
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (67 bp):
GAGGTAGTTGTCTGAGGTATATCATCGTTTACACAAACATCAGAACAGCTCAAAGACATCACGTA
GG
Found at i:100753629 original size:30 final size:29
Alignment explanation
Indices: 100753590--100753650 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
100753580 TATCTGAAAA
100753590 TTTAAATATAAATTATTCAATTTATTT-TAT
1 TTTAAATATAAA-TATT-AATTTATTTATAT
* *
100753620 TTTAGATATAAATATTTATTTATTTATAT
1 TTTAAATATAAATATTAATTTATTTATAT
100753649 TT
1 TT
100753651 ATATATATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 8 0.29
29 9 0.32
30 11 0.39
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (29 bp):
TTTAAATATAAATATTAATTTATTTATAT
Found at i:100753636 original size:24 final size:25
Alignment explanation
Indices: 100753609--100753664 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
100753599 AAATTATTCA
100753609 ATTTATTTTATTT-TAGATATAAAT
1 ATTTATTTTATTTATAGATATAAAT
** *
100753633 ATTTA-TTTATTTATATTTATATAT
1 ATTTATTTTATTTATAGATATAAAT
100753657 ATTTATTT
1 ATTTATTT
100753665 GCTAACCTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 7 0.26
24 18 0.67
25 2 0.07
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (25 bp):
ATTTATTTTATTTATAGATATAAAT
Found at i:100753648 original size:14 final size:16
Alignment explanation
Indices: 100753631--100753662 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
100753621 TTAGATATAA
100753631 ATATTTAT-T-TATTT
1 ATATTTATATATATTT
100753645 ATATTTATATATATTT
1 ATATTTATATATATTT
100753661 AT
1 AT
100753663 TTGCTAACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 1 0.06
16 7 0.44
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
ATATTTATATATATTT
Found at i:100753648 original size:20 final size:20
Alignment explanation
Indices: 100753625--100753664 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
100753615 TTTATTTTAG
*
100753625 ATATAAATATTTATTTATTT
1 ATATAAATATATATTTATTT
**
100753645 ATATTTATATATATTTATTT
1 ATATAAATATATATTTATTT
100753665 GCTAACCTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
ATATAAATATATATTTATTT
Found at i:100773671 original size:40 final size:40
Alignment explanation
Indices: 100773532--100773715 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
100773522 TCGAATGATG
* *
100773532 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * *
100773572 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAG-TAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
100773611 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
100773650 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
100773691 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
100773716 AGCGAGTCGT
Statistics
Matches: 117, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
38 17 0.15
39 28 0.24
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:100773671 original size:78 final size:82
Alignment explanation
Indices: 100773532--100773715 Score: 229
Period size: 78 Copynumber: 2.3 Consensus size: 82
100773522 TCGAATGATG
* * *
100773532 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
100773596 CGTGCGAGT-AATA-AA
66 CGTGCGAGTCAATATAA
* **
100773611 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
100773673 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
100773691 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
100773716 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
77 1 0.01
78 45 0.49
79 29 0.32
80 16 0.18
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:100782264 original size:40 final size:40
Alignment explanation
Indices: 100782219--100782385 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
100782209 CGGAATATAA
100782219 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
** * *
100782259 CCGGATA-AATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
100782298 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
100782338 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
100782378 CCGGATAT
1 CCGGATAT
100782386 CATTCAATTT
Statistics
Matches: 103, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.32
40 68 0.66
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:100786887 original size:48 final size:48
Alignment explanation
Indices: 100786825--100786932 Score: 153
Period size: 48 Copynumber: 2.2 Consensus size: 48
100786815 TGATATGTGT
* * **
100786825 GCTAGTGTAAGACATGTCTGGGACATGCGTCGGCCACAAGATATTTAA
1 GCTAGTGTAAGACATGCCTGGGACATGCATCGGCCACAAGATATACAA
* **
100786873 GCTAGTGTAAGACATGCCTGGGACATGCATCGGCCTCACTATATACAA
1 GCTAGTGTAAGACATGCCTGGGACATGCATCGGCCACAAGATATACAA
100786921 GCTAGTGTAAGA
1 GCTAGTGTAAGA
100786933 ACTATCTGGA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGCCTGGGACATGCATCGGCCACAAGATATACAA
Found at i:100786947 original size:48 final size:47
Alignment explanation
Indices: 100786825--100786947 Score: 131
Period size: 48 Copynumber: 2.6 Consensus size: 47
100786815 TGATATGTGT
* * **
100786825 GCTAGTGTAAGACATGTCTGGGACATGCGTCGGCCACAAGATATTTAA
1 GCTAGTGTAAGAC-TATCTGGGACATGCATCGGCCACAAGATATACAA
* **
100786873 GCTAGTGTAAGAC-ATGCCTGGGACATGCATCGGCCTCACTATATACAA
1 GCTAGTGTAAGACTAT--CTGGGACATGCATCGGCCACAAGATATACAA
*
100786921 GCTAGTGTAAGAACTATCTGGAACATG
1 GCTAGTGTAAG-ACTATCTGGGACATG
100786948 GTGTCAACTT
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
46 1 0.02
48 58 0.92
49 2 0.03
50 2 0.03
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACTATCTGGGACATGCATCGGCCACAAGATATACAA
Found at i:100792081 original size:27 final size:29
Alignment explanation
Indices: 100792041--100792110 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 29
100792031 CCCTCGAGCT
100792041 CGCACAC--AGTGCCAT-T-TTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
100792066 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
100792095 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
100792111 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
25 6 0.15
27 8 0.21
28 1 0.03
29 24 0.62
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:100799913 original size:29 final size:28
Alignment explanation
Indices: 100799862--100799932 Score: 92
Period size: 29 Copynumber: 2.6 Consensus size: 28
100799852 CCCTCGAGCT
* *
100799862 CGCACAC--AGTGCCGTATTTTCCAGCT
1 CGCACACTTAGTGCCATATTTTCCAGCA
*
100799888 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATAT-TTTCCAGCA
100799917 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
100799933 ATCTCGTCAC
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 6 0.16
28 9 0.24
29 23 0.61
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATTTTCCAGCA
Found at i:100803852 original size:23 final size:23
Alignment explanation
Indices: 100803819--100803862 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
100803809 ATGTTCAGAT
*
100803819 TCATCACTAAATA-AATCAATATG
1 TCATCAATAAATACAA-CAATATG
100803842 TCATCAATAAATACAACAATA
1 TCATCAATAAATACAACAATA
100803863 AATTGATCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.52, C:0.18, G:0.02, T:0.27
Consensus pattern (23 bp):
TCATCAATAAATACAACAATATG
Found at i:100808349 original size:30 final size:30
Alignment explanation
Indices: 100808313--100808373 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
100808303 TCTCTTTTCT
*
100808313 TTTTCTCTTATTTTTGTTCAAGAACATGTA
1 TTTTCTCTTATTTTTGGTCAAGAACATGTA
100808343 TTTTCTCTTATTTTTGGTCAAGAACATGTA
1 TTTTCTCTTATTTTTGGTCAAGAACATGTA
100808373 T
1 T
100808374 AATGGCTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.13, G:0.11, T:0.52
Consensus pattern (30 bp):
TTTTCTCTTATTTTTGGTCAAGAACATGTA
Found at i:100808383 original size:30 final size:30
Alignment explanation
Indices: 100808319--100808384 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
100808309 TTCTTTTTCT
* ** *
100808319 CTTATTTTTGTTCAAGAACATGTATTTTCT
1 CTTATTTTTGGTCAAGAACATGTATAATCG
*
100808349 CTTATTTTTGGTCAAGAACATGTATAATGG
1 CTTATTTTTGGTCAAGAACATGTATAATCG
100808379 CTTATT
1 CTTATT
100808385 ATCATACTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.48
Consensus pattern (30 bp):
CTTATTTTTGGTCAAGAACATGTATAATCG
Found at i:100816485 original size:20 final size:20
Alignment explanation
Indices: 100816462--100816499 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
100816452 GACTAAACTG
* *
100816462 AAAACTTGGAAAAGTTTTAC
1 AAAACTTAGAAAAATTTTAC
100816482 AAAACTTAGAAAAATTTT
1 AAAACTTAGAAAAATTTT
100816500 GCCCTAAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.32
Consensus pattern (20 bp):
AAAACTTAGAAAAATTTTAC
Found at i:100822956 original size:21 final size:20
Alignment explanation
Indices: 100822928--100822966 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
100822918 TTTGAAACAA
100822928 GGCACACGCCAGTGTGGATG
1 GGCACACGCCAGTGTGGATG
*
100822948 GGCAGCACGCCTGTGTGGA
1 GGCA-CACGCCAGTGTGGA
100822967 ACTTGAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.18, C:0.26, G:0.41, T:0.15
Consensus pattern (20 bp):
GGCACACGCCAGTGTGGATG
Found at i:100823137 original size:28 final size:28
Alignment explanation
Indices: 100823083--100823137 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
100823073 ACAGGGGTTT
100823083 TCACACGGCCTGACACACGCCCATGTCCC
1 TCACACGGCCTGA-ACACGCCCATGTCCC
*
100823112 TCACACGGCCTTG-ACACGCCCGTGTC
1 TCACACGGCC-TGAACACGCCCATGTC
100823138 TCATCACGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 12 0.50
29 10 0.42
30 2 0.08
ACGTcount: A:0.18, C:0.45, G:0.20, T:0.16
Consensus pattern (28 bp):
TCACACGGCCTGAACACGCCCATGTCCC
Found at i:100823144 original size:29 final size:28
Alignment explanation
Indices: 100823083--100823144 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 28
100823073 ACAGGGGTTT
*
100823083 TCACACGGCCTGACACACGCCCATGTCCC
1 TCACACGGCCTGA-ACACGCCCATGTCCA
*
100823112 TCACACGGCCTTG-ACACGCCCGTGTCTCA
1 TCACACGGCC-TGAACACGCCCATGTC-CA
100823141 TCAC
1 TCAC
100823145 GTGTTCGAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 12 0.41
29 15 0.52
30 2 0.07
ACGTcount: A:0.19, C:0.45, G:0.18, T:0.18
Consensus pattern (28 bp):
TCACACGGCCTGAACACGCCCATGTCCA
Found at i:100824197 original size:49 final size:49
Alignment explanation
Indices: 100824125--100824253 Score: 156
Period size: 50 Copynumber: 2.6 Consensus size: 49
100824115 TGATGCCGAT
**
100824125 GCCATGTCCCAGACATGGTCTTACACTGACTATCGA-TATCGAG-GCTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATC-ACTATC-AGTGCCAAC
* *
100824174 GCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACTTATCAGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTATCAC-TATCAGTGCCAAC
*
100824224 GCCATGTCCTAGACATGGTCTTACACTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGAC
100824254 ACATCTCGTA
Statistics
Matches: 70, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
48 2 0.03
49 33 0.47
50 34 0.49
51 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTATCACTATCAGTGCCAAC
Found at i:100824249 original size:50 final size:50
Alignment explanation
Indices: 100824118--100824294 Score: 178
Period size: 49 Copynumber: 3.7 Consensus size: 50
100824108 TAGGGTATGA
100824118 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGATATCGAG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGATATCGAG
* * *
100824168 -GCTGACGCCATGTCCCAGACATGGTCTTACACT-AGCTCTC-ACTTATC-AG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCGA--TATCGAG
* * *
100824217 TGCCAATGCCATGTCCTAGACATGGTCTTACACTGAC-A-C-ATCTC--G
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGATATCGAG
*
100824262 TAGCCGATG-CATGTCCCAAACAT-GTCTTACACT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACT
100824295 AGTTCTAGTC
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
44 10 0.09
45 14 0.13
46 9 0.08
48 4 0.04
49 37 0.34
50 34 0.31
51 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (50 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGATATCGAG
Found at i:100824307 original size:99 final size:99
Alignment explanation
Indices: 100824118--100824296 Score: 253
Period size: 99 Copynumber: 1.9 Consensus size: 99
100824108 TAGGGTATGA
* *
100824118 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGATATCGAGGCTGACGCCATGTCC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCGATATCGAGGCCGACGCCATGTCC
*
100824183 CAGACATGGTCTTACACTAGCTCTCACTTATCAG
66 CAAACATGGTCTTACACTAGCTCTCACTTATCAG
* * *
100824217 TGCCAATGCCATGTCCTAGACATGGTCTTACACTGAC-A-C-ATCTCGTA-GCCGATG-CATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCGATATCG-AGGCCGACGCCATGTC
100824277 CCAAACAT-GTCTTACACTAG
65 CCAAACATGGTCTTACACTAG
100824297 TTCTAGTCTC
Statistics
Matches: 73, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
94 12 0.16
95 13 0.18
96 10 0.14
97 2 0.03
98 1 0.01
99 35 0.48
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (99 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCGATATCGAGGCCGACGCCATGTCC
CAAACATGGTCTTACACTAGCTCTCACTTATCAG
Found at i:100836472 original size:40 final size:40
Alignment explanation
Indices: 100836406--100836572 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
100836396 AAATTGAATG
* * * *
100836406 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
100836445 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
100836485 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
100836525 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
100836565 ATATCCGG
1 ATATCCGG
100836573 TTATATTCCG
Statistics
Matches: 104, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
39 15 0.14
40 87 0.84
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:100841158 original size:29 final size:29
Alignment explanation
Indices: 100841096--100841198 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
100841086 GTGACAAGAT
* * *
100841096 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
100841125 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
100841154 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
100841183 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
100841199 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:100842994 original size:71 final size:71
Alignment explanation
Indices: 100842827--100842987 Score: 234
Period size: 71 Copynumber: 2.3 Consensus size: 71
100842817 CTAACCGATT
100842827 TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
1 TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
** *
100842892 TTTATC
66 TACAGC
* * *
100842898 TTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGTGACCTAGCTAC-
1 TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
*
100842962 TACAGGG
66 TACA-GC
*
100842969 TGTCTCGTAGCTTTCTTGT
1 TGTCTCGTAGCTCTCTTGT
100842988 ACACATGATG
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
70 2 0.03
71 77 0.97
ACGTcount: A:0.17, C:0.27, G:0.20, T:0.36
Consensus pattern (71 bp):
TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
TACAGC
Found at i:100847478 original size:47 final size:49
Alignment explanation
Indices: 100847409--100847584 Score: 173
Period size: 49 Copynumber: 3.6 Consensus size: 49
100847399 GTATGATGCT
* * *
100847409 GATGCCATGTCCCATACATGGTCTTACACTAGCTCATC-CATC-AAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCAAATCGAAGCC
* * * **
100847456 GATGCCATGTCCTAGCCATGGTCTTACACTAACT-ATCAAAATCGGGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC-AAATCGAAGCC
* * *
100847505 GATGTCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATGTTCG-TGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCA-A--ATCGAAGCC
*
100847555 GATGCCATGTCCCAGACATGGTTTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
100847585 GACACATCTC
Statistics
Matches: 106, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
46 3 0.03
47 30 0.28
48 4 0.04
49 35 0.33
50 31 0.29
51 3 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCAAATCGAAGCC
Found at i:100847638 original size:46 final size:47
Alignment explanation
Indices: 100847404--100847672 Score: 160
Period size: 46 Copynumber: 5.7 Consensus size: 47
100847394 ATAGTGTATG
* * *
100847404 ATGCTGATGCCATGTCCCATACATGGTCTTACACTAGC-T-CATCCATC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACAT-C-TC
* * * * ** * *
100847451 AAGTCGATGCCATGTCCTAGCCATGGTCTTACACTAACTATCAAAATC-G
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T--ACATCTC
** * * *
100847500 GGGCCGATGTCATGTCCCAGACATGGTCTTACACTAGCTCTCACATGTTC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACAT-CTC
* * *
100847550 GTGCCGATGCCATGTCCCAGACATGGTTTTACACTGAC--ACATCTC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTC
**
100847595 ATAGCCGATG-CATGTCTTAGACAT-GTCTTACACTGGCTTACATCTC
1 AT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTC
* * * *
100847641 GAGGCCGATG-AATGTTCTAGACAT-GTCTTACA
1 -ATGCCGATGCCATGTCCCAGACATGGTCTTACA
100847673 TTAGCTCTCA
Statistics
Matches: 175, Mismatches: 36, Indels: 23
0.75 0.15 0.10
Matches are distributed among these distances:
44 11 0.06
45 15 0.09
46 44 0.25
47 32 0.18
48 3 0.02
49 34 0.19
50 33 0.19
51 1 0.01
52 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTC
Found at i:100848702 original size:32 final size:32
Alignment explanation
Indices: 100848666--100848726 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
100848656 TTATTTGTGA
* *
100848666 TTTAATGACCCCCAATTTTTGTTCTCTAAACC
1 TTTAAAGACCCCCAATTTTGGTTCTCTAAACC
*
100848698 TTTAAAGACCCCTAATTTTGGTTCTCTAA
1 TTTAAAGACCCCCAATTTTGGTTCTCTAA
100848727 CTATTTGACA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.08, T:0.41
Consensus pattern (32 bp):
TTTAAAGACCCCCAATTTTGGTTCTCTAAACC
Found at i:100857748 original size:17 final size:16
Alignment explanation
Indices: 100857707--100857749 Score: 70
Period size: 15 Copynumber: 2.7 Consensus size: 16
100857697 GTTGTTTAGA
100857707 TGTGAAACTATAGAAT
1 TGTGAAACTATAGAAT
100857723 T-TGAAACTATAGAAT
1 TGTGAAACTATAGAAT
100857738 TGTGAAAACTAT
1 TGTG-AAACTAT
100857750 TGGTTATGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.60
16 3 0.12
17 7 0.28
ACGTcount: A:0.44, C:0.07, G:0.16, T:0.33
Consensus pattern (16 bp):
TGTGAAACTATAGAAT
Found at i:100862295 original size:33 final size:34
Alignment explanation
Indices: 100862222--100862296 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
100862212 TTTGCATTTA
*
100862222 TGATACTGTTACTGTAATGGGCTAAGGCCCACAC
1 TGATACTGTTACTGCAATGGGCTAAGGCCCACAC
100862256 TGATACTGTTACTGCAATGGGCTAAGG-CCACAC
1 TGATACTGTTACTGCAATGGGCTAAGGCCCACAC
*
100862289 TTATACTG
1 TGATACTG
100862297 GACTGCCACT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 13 0.33
34 26 0.67
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (34 bp):
TGATACTGTTACTGCAATGGGCTAAGGCCCACAC
Found at i:100864633 original size:50 final size:49
Alignment explanation
Indices: 100864515--100864638 Score: 146
Period size: 48 Copynumber: 2.6 Consensus size: 49
100864505 TGTGGTGTGT
* * *
100864515 CAGTGCAAGACCTGTCTGGGACAT-GCATTGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATGGACACCGATAGATGAAAGC
* * * *
100864563 CAGT-TAAAACCTGTCTGGGACATGGCATCGGAC-TCGCTATATGAAAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCAT-GGACACCGATAGATGAAAGC
100864611 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
100864639 GTTGGCATCT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
47 17 0.27
48 23 0.36
49 9 0.14
50 15 0.23
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.21
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATGGACACCGATAGATGAAAGC
Found at i:100867760 original size:9 final size:9
Alignment explanation
Indices: 100867746--100867772 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
100867736 AAAACGGGCC
100867746 GAAAATGGA
1 GAAAATGGA
100867755 GAAAATGGA
1 GAAAATGGA
100867764 GAAAATGGA
1 GAAAATGGA
100867773 CCCACGTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.33, T:0.11
Consensus pattern (9 bp):
GAAAATGGA
Found at i:100869248 original size:46 final size:46
Alignment explanation
Indices: 100869126--100869250 Score: 187
Period size: 46 Copynumber: 2.7 Consensus size: 46
100869116 TGTAACCCGC
* *
100869126 CCATAAGTGAACTCAGACTCAACTCAATGAACTTGGGCGTTCACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTTGGGCGTTCACAT
* **
100869172 CCATAAGTGAACTCAAACTCAACTCAACGAGCTTGGGCGTTTGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTTGGGCGTTCACAT
* *
100869218 CCATAAGTGAACTCGGACTCAACCCAACGAGCT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCT
100869251 CGGATGCCTA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTTGGGCGTTCACAT
Found at i:100870470 original size:18 final size:18
Alignment explanation
Indices: 100870447--100870483 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
100870437 AATTAAGCAC
100870447 TTTATGCATAGAATTTCT
1 TTTATGCATAGAATTTCT
100870465 TTTATGCATAGAATTTCT
1 TTTATGCATAGAATTTCT
100870483 T
1 T
100870484 CACGAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.11, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTATGCATAGAATTTCT
Found at i:100870744 original size:13 final size:13
Alignment explanation
Indices: 100870728--100870755 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
100870718 CACAAGTGTT
100870728 TCACACGGGCGTG
1 TCACACGGGCGTG
100870741 TCACACGGGCGTG
1 TCACACGGGCGTG
100870754 TC
1 TC
100870756 CCTGCCCAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.32, G:0.36, T:0.18
Consensus pattern (13 bp):
TCACACGGGCGTG
Found at i:100871620 original size:13 final size:13
Alignment explanation
Indices: 100871602--100871630 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
100871592 GAGCCCAAGT
100871602 CTATAAATACACC
1 CTATAAATACACC
100871615 CTATAAATACACC
1 CTATAAATACACC
100871628 CTA
1 CTA
100871631 GAAGAGGAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.31, G:0.00, T:0.24
Consensus pattern (13 bp):
CTATAAATACACC
Found at i:100881110 original size:13 final size:13
Alignment explanation
Indices: 100881092--100881118 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
100881082 AGAGTCATCG
100881092 CACACGAGCGTGT
1 CACACGAGCGTGT
100881105 CACACGAGCGTGT
1 CACACGAGCGTGT
100881118 C
1 C
100881119 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACGAGCGTGT
Found at i:100883426 original size:40 final size:39
Alignment explanation
Indices: 100883369--100883574 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
100883359 AATGATACCT
* ** *
100883369 GGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCC
1 GGGCTAAG-ACCGAAGGCATTCGTGCGAGTTG-TTATATCC
* *
100883409 AGGCTAAGACCTAAAGGCATTCGTGCGAGTTGTTATATCC
1 GGGCTAAGACC-GAAGGCATTCGTGCGAGTTGTTATATCC
100883449 GGGCTAAGACACGAAGGCATTCGTGCGAGTTGTTATATCC
1 GGGCTAAGAC-CGAAGGCATTCGTGCGAGTTGTTATATCC
* * *
100883489 GGGCTAAGACCCGAAGGCATTAGTGCGAGTTGCTATACCC
1 GGGCTAAGA-CCGAAGGCATTCGTGCGAGTTGTTATATCC
* ** *
100883529 GGGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATAT-C
1 GGGCTAAGA-CCGAAGGC-ATTCGTGCGAGTTGTTATATCC
100883568 GGGCTAA
1 GGGCTAA
100883575 ATTCCGAAGA
Statistics
Matches: 143, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
39 9 0.06
40 127 0.89
41 7 0.05
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (39 bp):
GGGCTAAGACCGAAGGCATTCGTGCGAGTTGTTATATCC
Found at i:100883506 original size:80 final size:79
Alignment explanation
Indices: 100883363--100883574 Score: 248
Period size: 80 Copynumber: 2.7 Consensus size: 79
100883353 CATTTGAATG
* * * * *
100883363 ATACCTGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCAGGCTAAGACCTAAAGGC
1 ATACCCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTTG-TTATATCCGGGCTAAGACCCAAAGGC
* *
100883427 ATTCGTGCGAGTTGTT
64 ATTAGTGCGAGTTGCT
* * * *
100883443 ATATCCGGGCTAAGACACGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCATT-GTGCTAGTTGTTATATCCGGGCTAAGACCCAAAGGCA
100883508 TTAGTGCGAGTTGCT
65 TTAGTGCGAGTTGCT
* * *
100883523 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT-CGGGCTAA
1 ATACCCGGGCTAAGACCCGAAGGC-ATTGTGCTAGTTGTTATATCCGGGCTAA
100883575 ATTCCGAAGA
Statistics
Matches: 112, Mismatches: 17, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
79 10 0.09
80 97 0.87
81 5 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
ATACCCGGGCTAAGACCCGAAGGCATTGTGCTAGTTGTTATATCCGGGCTAAGACCCAAAGGCAT
TAGTGCGAGTTGCT
Found at i:100883798 original size:24 final size:24
Alignment explanation
Indices: 100883777--100883829 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
100883767 GTTGATGAAG
100883777 TGTGAAGTAAGTATGATTATGAGAA
1 TGTGAAGTAA-TATGATTATGAGAA
* *
100883802 TGTGTATTAATATGATTATGAGAA
1 TGTGAAGTAATATGATTATGAGAA
100883826 TGTG
1 TGTG
100883830 TATTAATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.36, C:0.00, G:0.26, T:0.38
Consensus pattern (24 bp):
TGTGAAGTAATATGATTATGAGAA
Found at i:100883830 original size:24 final size:24
Alignment explanation
Indices: 100883788--100883837 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
100883778 GTGAAGTAAG
100883788 TATGATTATGAGAATGTGTATTAA
1 TATGATTATGAGAATGTGTATTAA
100883812 TATGATTATGAGAATGTGTATTAA
1 TATGATTATGAGAATGTGTATTAA
100883836 TA
1 TA
100883838 AAGTGATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.42
Consensus pattern (24 bp):
TATGATTATGAGAATGTGTATTAA
Found at i:100889623 original size:40 final size:40
Alignment explanation
Indices: 100889568--100889748 Score: 240
Period size: 40 Copynumber: 4.5 Consensus size: 40
100889558 TGAATGATAC
* * *
100889568 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-TTATAT
*
100889608 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTATAT
* *
100889648 CCGGGCTAAGACACGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTATAT
* * *
100889688 CCGGGCTAAGACCCGAAGGCATT-AGTGCAAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTCA-TGCGAGTTGTTATAT
*
100889728 CCGGGTTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
100889749 ATTGTGCTTG
Statistics
Matches: 128, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
40 126 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTATAT
Found at i:100889769 original size:80 final size:80
Alignment explanation
Indices: 100889564--100889769 Score: 270
Period size: 80 Copynumber: 2.6 Consensus size: 80
100889554 CATTTGAATG
* * * *
100889564 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
* * *
100889629 TTCGTGCGAGTTGTT
66 TTAGTGCAAGTTGCT
* * * *
100889644 ATATCCGGGCTAAGACACGAAGGC-ATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGC
1 ATACCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGC
100889708 ATTAGTGCAAGTTGCT
65 ATTAGTGCAAGTTGCT
* * *
100889724 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTTTATCC
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCC
100889770 AGCTAAATTC
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 101 0.95
81 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
TTAGTGCAAGTTGCT
Found at i:100889999 original size:24 final size:24
Alignment explanation
Indices: 100889978--100890030 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
100889968 GTTGATGAAG
100889978 TGTGAAGTAAGTATGATTATGAGAA
1 TGTGAAGTAA-TATGATTATGAGAA
* *
100890003 TGTGTATTAATATGATTATGAGAA
1 TGTGAAGTAATATGATTATGAGAA
100890027 TGTG
1 TGTG
100890031 TATTAATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.36, C:0.00, G:0.26, T:0.38
Consensus pattern (24 bp):
TGTGAAGTAATATGATTATGAGAA
Found at i:100890031 original size:24 final size:24
Alignment explanation
Indices: 100889989--100890038 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
100889979 GTGAAGTAAG
100889989 TATGATTATGAGAATGTGTATTAA
1 TATGATTATGAGAATGTGTATTAA
100890013 TATGATTATGAGAATGTGTATTAA
1 TATGATTATGAGAATGTGTATTAA
100890037 TA
1 TA
100890039 AAGTGATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.42
Consensus pattern (24 bp):
TATGATTATGAGAATGTGTATTAA
Found at i:100895269 original size:46 final size:46
Alignment explanation
Indices: 100895199--100895365 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 46
100895189 TGATATGTGT
100895199 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGCATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGCATGAGA
* * * *
100895245 GCCAGTGTAAGACATGTCTGGGACATGCATTAG-CATTGAG-ACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCA--CAGCATGAGA
* * * * *
100895291 GCTAGTGTAAGACATGTCTGGGACATACATCGGCCTC-GCGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGC-AT-GA-GA
*
100895339 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
100895366 GCGCCAGCTT
Statistics
Matches: 99, Mismatches: 15, Indels: 12
0.79 0.12 0.10
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 66 0.67
47 4 0.04
48 26 0.26
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGCATGAGA
Found at i:100899533 original size:47 final size:47
Alignment explanation
Indices: 100899416--100899593 Score: 181
Period size: 45 Copynumber: 3.9 Consensus size: 47
100899406 TGTAACCCGC
* * * * * *
100899416 CCATAAGTGAACTCGGACTCAACTCAACTAGATCGG-CG-TTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCAT
*
100899461 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG---CAT
* * *
100899511 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCAT
*
100899554 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GATGCC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC
100899594 CAAATATCCC
Statistics
Matches: 112, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 39 0.35
46 31 0.28
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCAT
Found at i:100899534 original size:92 final size:92
Alignment explanation
Indices: 100899424--100899593 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 92
100899414 GCCCATAAGT
* *
100899424 GAACTCGGACTCAACTCAACTAGATCGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGATCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
100899488 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTC-GATGCCTAGTTACATCTCAC
*
100899516 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGATCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
100899581 CGAGTTCGATGCC
66 CGAGTTCGATGCC
100899594 CAAATATCCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 32 0.43
93 42 0.57
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGATCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGATGCCTAGTTACATCTCAC
Found at i:100905082 original size:30 final size:30
Alignment explanation
Indices: 100905046--100905104 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
100905036 TTCATATTTC
100905046 ATATTTCATAACACTGGGCCGAAGCCTTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTTT
**
100905076 ATATTTCATATTACTGGGCCGAAGCCTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTT
100905105 ACTGTAAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (30 bp):
ATATTTCATAACACTGGGCCGAAGCCTTTT
Found at i:100905341 original size:25 final size:24
Alignment explanation
Indices: 100905294--100905389 Score: 124
Period size: 25 Copynumber: 4.0 Consensus size: 24
100905284 CTGCTTTCGT
*
100905294 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
100905319 ATAACTGGGGCAAAAAGCCCTTTTA
1 ATAACTGGGGC-ATAAGCCCTTTTA
100905344 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
100905367 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
100905390 GCACTTCCTC
Statistics
Matches: 64, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
23 22 0.34
24 13 0.20
25 25 0.39
26 4 0.06
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:100905370 original size:23 final size:23
Alignment explanation
Indices: 100905315--100905388 Score: 112
Period size: 23 Copynumber: 3.1 Consensus size: 23
100905305 CCTAGCCTCT
*
100905315 TTTAATAACTGGGGCAAAAAGCCC
1 TTTAATAACTGGGGC-ATAAGCCC
100905339 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
100905363 TTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
100905386 TTT
1 TTT
100905389 TGCACTTCCT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 25 0.53
24 7 0.15
25 15 0.32
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:100905464 original size:20 final size:20
Alignment explanation
Indices: 100905439--100905505 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
100905429 TTATGAATAC
100905439 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
100905459 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
100905479 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
100905499 ACCATGT
1 ATCATGT
100905506 TTACTAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:100913142 original size:31 final size:31
Alignment explanation
Indices: 100913104--100913163 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
100913094 TTCATATTTC
100913104 ATATTTCATAACACTGGGCCGAAGCCTTTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTTTT
**
100913135 ATATTTCATATTACTGGGCCGAAGCCTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTT
100913164 ACTGTAAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.37
Consensus pattern (31 bp):
ATATTTCATAACACTGGGCCGAAGCCTTTTT
Found at i:100913400 original size:25 final size:24
Alignment explanation
Indices: 100913353--100913448 Score: 124
Period size: 25 Copynumber: 4.0 Consensus size: 24
100913343 CTGCTTTCGT
*
100913353 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
100913378 ATAACTGGGGCAAAAAGCCCTTTTA
1 ATAACTGGGGC-ATAAGCCCTTTTA
100913403 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
100913426 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
100913449 GCACTTTCTC
Statistics
Matches: 64, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
23 22 0.34
24 13 0.20
25 25 0.39
26 4 0.06
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:100913429 original size:23 final size:23
Alignment explanation
Indices: 100913374--100913447 Score: 112
Period size: 23 Copynumber: 3.1 Consensus size: 23
100913364 CCTAGCCTCT
*
100913374 TTTAATAACTGGGGCAAAAAGCCC
1 TTTAATAACTGGGGC-ATAAGCCC
100913398 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
100913422 TTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
100913445 TTT
1 TTT
100913448 TGCACTTTCT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 25 0.53
24 7 0.15
25 15 0.32
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:100913522 original size:20 final size:20
Alignment explanation
Indices: 100913497--100913563 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
100913487 TTATGAATAC
100913497 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
100913517 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
100913537 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
100913557 ACCATGT
1 ATCATGT
100913564 TTACTAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:100916787 original size:29 final size:29
Alignment explanation
Indices: 100916755--100916813 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
100916745 AGCGTACGGT
100916755 TTAGATCTGTTTAAGGTGTGGGATCTAAC
1 TTAGATCTGTTTAAGGTGTGGGATCTAAC
100916784 TTAGATCTGTTTAAGGTGTGGGATCTAAC
1 TTAGATCTGTTTAAGGTGTGGGATCTAAC
100916813 T
1 T
100916814 CTCGTTTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.10, G:0.27, T:0.39
Consensus pattern (29 bp):
TTAGATCTGTTTAAGGTGTGGGATCTAAC
Found at i:100918811 original size:27 final size:27
Alignment explanation
Indices: 100918781--100918832 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
100918771 ATATGTGTTC
* *
100918781 GTTTCAGATATTTTTGCCTTGTGATTT
1 GTTTCAAATATTTTGGCCTTGTGATTT
100918808 GTTTCAAATATTTTGGCCTTGTGAT
1 GTTTCAAATATTTTGGCCTTGTGAT
100918833 CTTGAAATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.17, C:0.12, G:0.19, T:0.52
Consensus pattern (27 bp):
GTTTCAAATATTTTGGCCTTGTGATTT
Found at i:100926680 original size:2 final size:2
Alignment explanation
Indices: 100926673--100926704 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
100926663 CAATCATACC
100926673 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
100926705 CACATATTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:100935006 original size:10 final size:10
Alignment explanation
Indices: 100934987--100935019 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
100934977 AAATAACACA
*
100934987 TTTTTAAAAT
1 TTTTTGAAAT
100934997 TTTTTGAAA-
1 TTTTTGAAAT
100935006 TTTTTGAAAT
1 TTTTTGAAAT
100935016 TTTT
1 TTTT
100935020 CATATTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 9 0.43
10 12 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (10 bp):
TTTTTGAAAT
Found at i:100935074 original size:10 final size:9
Alignment explanation
Indices: 100934986--100935077 Score: 55
Period size: 9 Copynumber: 9.9 Consensus size: 9
100934976 TAAATAACAC
100934986 ATTTTTAAA
1 ATTTTTAAA
*
100934995 ATTTTTTGAA
1 A-TTTTTAAA
*
100935005 ATTTTTGAA
1 ATTTTTAAA
* *
100935014 ATTTTTCAT
1 ATTTTTAAA
100935023 ATTTTT-AA
1 ATTTTTAAA
100935031 ATTATTTAGAA
1 ATT-TTTA-AA
100935042 TGATTTTT--A
1 --ATTTTTAAA
*
100935051 TTTTTTAAA
1 ATTTTTAAA
100935060 ATTTTTAAGA
1 ATTTTTAA-A
*
100935070 GTTTTTAA
1 ATTTTTAA
100935078 TTTTTCAAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 17
0.74 0.08 0.19
Matches are distributed among these distances:
7 5 0.07
8 4 0.06
9 34 0.51
10 16 0.24
11 2 0.03
12 3 0.04
13 3 0.04
ACGTcount: A:0.34, C:0.01, G:0.07, T:0.59
Consensus pattern (9 bp):
ATTTTTAAA
Found at i:100939106 original size:136 final size:136
Alignment explanation
Indices: 100938940--100939211 Score: 526
Period size: 136 Copynumber: 2.0 Consensus size: 136
100938930 AATGGAAAAT
100938940 TTGTTAATCTAATGCTTAAGCTACAAAGTAAGAAAGTGGTTATGAATCTTAACCATTTGATTAAC
1 TTGTTAATCTAATGCTTAAGCTACAAAGTAAGAAAGTGGTTATGAATCTTAACCATTTGATTAAC
100939005 AAATTTTGCATTCTAACTCCTTTCCATCCTTCATACCAAGAAAAGCCTTAGTGCTGTCATAGTGC
66 AAATTTTGCATTCTAACTCCTTTCCATCCTTCATACCAAGAAAAGCCTTAGTGCTGTCATAGTGC
100939070 AGATCC
131 AGATCC
*
100939076 TTGTTAATCTAATGCTTAAGCTACAAAGTAAGAAAGTGGTTATGAATCTTAACCATTTGATTATC
1 TTGTTAATCTAATGCTTAAGCTACAAAGTAAGAAAGTGGTTATGAATCTTAACCATTTGATTAAC
*
100939141 AAATTTTGCATTCTAACTCCTTTCCATCCTTCATAGCAAGAAAAGCCTTAGTGCTGTCATAGTGC
66 AAATTTTGCATTCTAACTCCTTTCCATCCTTCATACCAAGAAAAGCCTTAGTGCTGTCATAGTGC
100939206 AGATCC
131 AGATCC
100939212 ATGTGATCCG
Statistics
Matches: 134, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
136 134 1.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.34
Consensus pattern (136 bp):
TTGTTAATCTAATGCTTAAGCTACAAAGTAAGAAAGTGGTTATGAATCTTAACCATTTGATTAAC
AAATTTTGCATTCTAACTCCTTTCCATCCTTCATACCAAGAAAAGCCTTAGTGCTGTCATAGTGC
AGATCC
Found at i:100945035 original size:30 final size:30
Alignment explanation
Indices: 100944990--100945088 Score: 78
Period size: 30 Copynumber: 3.3 Consensus size: 30
100944980 GAATTTTAGA
*
100944990 ATTTTTTTATATTTAAAAAATTAATTTTTAT
1 ATTTTTTAAT-TTTAAAAAATTAATTTTTAT
* * *
100945021 ATTTTTTAATTTTAAAGAGTTTATTTTT-T
1 ATTTTTTAATTTTAAAAAATTAATTTTTAT
** * *
100945050 ATAAATTT-ATTTTAAAAAATATGATTTTAAT
1 AT-TTTTTAATTTTAAAAAAT-TAATTTTTAT
100945081 -TTTTTTAA
1 ATTTTTTAA
100945089 ATATAAATTT
Statistics
Matches: 52, Mismatches: 12, Indels: 9
0.71 0.16 0.12
Matches are distributed among these distances:
29 16 0.31
30 26 0.50
31 10 0.19
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (30 bp):
ATTTTTTAATTTTAAAAAATTAATTTTTAT
Found at i:100945087 original size:29 final size:29
Alignment explanation
Indices: 100944989--100945087 Score: 83
Period size: 29 Copynumber: 3.3 Consensus size: 29
100944979 AGAATTTTAG
100944989 AATTTTTTTATATTTAAAAAATTAATTTTT
1 AATTTTTTTAT-TTTAAAAAATTAATTTTT
* * * *
100945019 ATATTTTTTAATTTTAAAGAGTTTATTTTT
1 A-ATTTTTTTATTTTAAAAAATTAATTTTT
* *** *
100945049 TATAAATTTATTTTAAAAAATATGA-TTTT
1 AATTTTTTTATTTTAAAAAAT-TAATTTTT
100945078 AATTTTTTTA
1 AATTTTTTTA
100945088 AATATAAATT
Statistics
Matches: 51, Mismatches: 16, Indels: 5
0.71 0.22 0.07
Matches are distributed among these distances:
29 24 0.47
30 18 0.35
31 9 0.18
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (29 bp):
AATTTTTTTATTTTAAAAAATTAATTTTT
Found at i:100946691 original size:29 final size:28
Alignment explanation
Indices: 100946645--100946703 Score: 91
Period size: 29 Copynumber: 2.1 Consensus size: 28
100946635 GGAGAATGTA
100946645 GGTTTAAATATTGAAAGTAACATTATTG
1 GGTTTAAATATTGAAAGTAACATTATTG
* *
100946673 GGTTTCAAATCTTGGAAGTAACATTATTG
1 GGTTT-AAATATTGAAAGTAACATTATTG
100946702 GG
1 GG
100946704 AGCAAAGGCC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
28 5 0.18
29 23 0.82
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (28 bp):
GGTTTAAATATTGAAAGTAACATTATTG
Found at i:100947580 original size:21 final size:21
Alignment explanation
Indices: 100947570--100947614 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
100947560 TAAAAACATT
100947570 AAAAATATACAAAAATACAAA
1 AAAAATATACAAAAATACAAA
* *
100947591 AAAAATATAAAAAAATTCAAA
1 AAAAATATACAAAAATACAAA
100947612 AAA
1 AAA
100947615 TAGAAGGAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.16
Consensus pattern (21 bp):
AAAAATATACAAAAATACAAA
Found at i:100947583 original size:10 final size:10
Alignment explanation
Indices: 100947570--100947616 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
100947560 TAAAAACATT
*
100947570 AAAAATATAC
1 AAAAATATAA
*
100947580 AAAAATACAAA
1 AAAAATA-TAA
100947591 AAAAATATAA
1 AAAAATATAA
*
100947601 AAAAAT-TCA
1 AAAAATATAA
100947610 AAAAATA
1 AAAAATA
100947617 GAAGGAAGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
9 8 0.26
10 15 0.48
11 8 0.26
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (10 bp):
AAAAATATAA
Found at i:100949706 original size:2 final size:2
Alignment explanation
Indices: 100949699--100949728 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
100949689 CATCAAATAA
100949699 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
100949729 CATCAAGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:100950155 original size:17 final size:17
Alignment explanation
Indices: 100950135--100950179 Score: 58
Period size: 15 Copynumber: 2.8 Consensus size: 17
100950125 AAAATTCATC
100950135 TAAAAATTCAAAAATTA
1 TAAAAATTCAAAAATTA
*
100950152 TAAAAA--CAAAAATTT
1 TAAAAATTCAAAAATTA
*
100950167 TTAAAATTCAAAA
1 TAAAAATTCAAAA
100950180 GAATTATGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 13 0.54
17 11 0.46
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAAATTCAAAAATTA
Found at i:100950156 original size:16 final size:17
Alignment explanation
Indices: 100950137--100950179 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
100950127 AATTCATCTA
100950137 AAAATTCAAAAA-TTAT
1 AAAATTCAAAAATTTAT
* *
100950153 AAAA-ACAAAAATTTTT
1 AAAATTCAAAAATTTAT
100950169 AAAATTCAAAA
1 AAAATTCAAAA
100950180 GAATTATGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 6 0.27
16 11 0.50
17 5 0.23
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (17 bp):
AAAATTCAAAAATTTAT
Found at i:100950423 original size:25 final size:26
Alignment explanation
Indices: 100950395--100950445 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
100950385 CTTATTTCAT
*
100950395 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAACATAA
* *
100950420 TAAATCAAATATATTTAAAAACATAA
1 TAAATAAAAAATATTTAAAAACATAA
100950446 AAACAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAACATAA
Found at i:100950437 original size:26 final size:24
Alignment explanation
Indices: 100950407--100950455 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
100950397 AATAAAAAAT
*
100950407 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
100950433 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
100950456 TAAGACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:100950475 original size:21 final size:22
Alignment explanation
Indices: 100950442--100950484 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
100950432 ATTTAAAAAC
* *
100950442 ATAAAAACAAATATTAAGACAA
1 ATAAAAACAAATACTAAAACAA
*
100950464 ATAAAAA-TAATACTAAAACAA
1 ATAAAAACAAATACTAAAACAA
100950485 TTCTTAAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.70, C:0.09, G:0.02, T:0.19
Consensus pattern (22 bp):
ATAAAAACAAATACTAAAACAA
Found at i:100950872 original size:22 final size:22
Alignment explanation
Indices: 100950847--100950926 Score: 90
Period size: 22 Copynumber: 3.5 Consensus size: 22
100950837 GAATTTAAAT
100950847 AAAAATATTTTTTTAGAAATTA
1 AAAAATATTTTTTTAGAAATTA
* *
100950869 AAAAATATTAATTTT-GAATTTAAATA
1 AAAAATATT-TTTTTAG-A---AATTA
100950895 AAAAATATTTTTTTAGAAATTA
1 AAAAATATTTTTTTAGAAATTA
100950917 AAAAATATTT
1 AAAAATATTT
100950927 GTTCAAGTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
22 24 0.50
23 5 0.10
25 5 0.10
26 14 0.29
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (22 bp):
AAAAATATTTTTTTAGAAATTA
Found at i:100950882 original size:26 final size:25
Alignment explanation
Indices: 100950852--100950925 Score: 82
Period size: 25 Copynumber: 3.0 Consensus size: 25
100950842 TAAATAAAAA
100950852 TATTTTTTTAGAAATTAAAAAATAT
1 TATTTTTTTAGAAATTAAAAAATAT
* * * *
100950877 TA--ATTTT-GAATTTAAATAAAAAA
1 TATTTTTTTAGAAATTAAA-AAATAT
100950900 TATTTTTTTAGAAATTAAAAAATAT
1 TATTTTTTTAGAAATTAAAAAATAT
100950925 T
1 T
100950926 TGTTCAAGTT
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
22 8 0.22
23 10 0.27
25 11 0.30
26 8 0.22
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (25 bp):
TATTTTTTTAGAAATTAAAAAATAT
Found at i:100950894 original size:47 final size:48
Alignment explanation
Indices: 100950826--100950925 Score: 186
Period size: 48 Copynumber: 2.1 Consensus size: 48
100950816 ATAGGATTTT
100950826 AATA-TAATTTTGAATTTAAAT-AAAAATATTTTTTTAGAAATTAAAA
1 AATATTAATTTTGAATTTAAATAAAAAATATTTTTTTAGAAATTAAAA
100950872 AATATTAATTTTGAATTTAAATAAAAAATATTTTTTTAGAAATTAAAA
1 AATATTAATTTTGAATTTAAATAAAAAATATTTTTTTAGAAATTAAAA
100950920 AATATT
1 AATATT
100950926 TGTTCAAGTT
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
46 4 0.08
47 17 0.33
48 31 0.60
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (48 bp):
AATATTAATTTTGAATTTAAATAAAAAATATTTTTTTAGAAATTAAAA
Found at i:100950938 original size:47 final size:46
Alignment explanation
Indices: 100950838--100950938 Score: 150
Period size: 48 Copynumber: 2.2 Consensus size: 46
100950828 TATAATTTTG
* *
100950838 AATTTAAATAAAAATATTTTTTTAGAAATTAAAAAATATTAATTTTG
1 AATTTAAATAAAAATATTTTTTTAGAAATTAAAAAATATT-ATGTTC
100950885 AATTTAAATAAAAAATATTTTTTTAGAAATTAAAAAATATT-TGTTC
1 AATTTAAAT-AAAAATATTTTTTTAGAAATTAAAAAATATTATGTTC
100950931 AAGTTTAA
1 AA-TTTAA
100950939 TTTTAATAGT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
46 5 0.10
47 14 0.28
48 31 0.62
ACGTcount: A:0.50, C:0.01, G:0.05, T:0.44
Consensus pattern (46 bp):
AATTTAAATAAAAATATTTTTTTAGAAATTAAAAAATATTATGTTC
Found at i:100953751 original size:39 final size:39
Alignment explanation
Indices: 100953696--100953873 Score: 236
Period size: 39 Copynumber: 4.5 Consensus size: 39
100953686 GGACTAAGAT
* * *
100953696 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGTTACTAAA-CCGGGTTAAGTC
100953735 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGTTACTAAA-CCGGGTTAAGTC
100953774 CCGAAGGCATTTGTGCGAGTTACTAAACTCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAAC-CGGGTTAAGTC
* *
100953814 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AACC-GGGTTAAGTC
*
100953854 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTTGTGCGAGT
100953874 CGTTATATCC
Statistics
Matches: 128, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
38 1 0.01
39 72 0.56
40 47 0.37
41 8 0.06
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:100953888 original size:79 final size:78
Alignment explanation
Indices: 100953696--100953899 Score: 207
Period size: 79 Copynumber: 2.6 Consensus size: 78
100953686 GGACTAAGAT
* * * * * *
100953696 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGAGCGAGTCACTAAATCC-GGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTA
100953760 AATCCGGGTTAAGC
65 AATCCGGGTTAAGC
* * *
100953774 CCGAAGGCATTTGTGCGAGTTACTAAACTCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTA
1 CCGAAGGCATTTGAGCGAGTCACTAAA-TCCGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTA
*
100953839 TAA-CCGGGGTT-TGTC
65 -AATCC-GGGTTAAG-C
** * * *
100953854 CCGAAGGCATTTGAGCGAGTCGTTATATCCGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAGCGAGTCACTAAATCCGGTTAAGTCCCGAAGG
100953900 TACGTGATTC
Statistics
Matches: 107, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
78 31 0.29
79 46 0.43
80 30 0.28
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGAGCGAGTCACTAAATCCGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
ATCCGGGTTAAGC
Found at i:100956792 original size:173 final size:173
Alignment explanation
Indices: 100956503--100956897 Score: 709
Period size: 173 Copynumber: 2.3 Consensus size: 173
100956493 TCAAGACTCG
*
100956503 ATCAATTGTAAATCTCCGGGTAAATCTCCGATTTCTTCAACTCTTCAAGGACCTTGTGTAATTAA
1 ATCAATTGCAAATCTCCGGGTAAATCTCCGATTTCTTCAACTCTTCAAGGACCTTGTGTAATTAA
* *
100956568 ACCAAAATTCGATTTATGAATATCCACATGTAGCCGAATTTTGGGTTGACTTGGTCCTCCATTTG
66 ACCAAAATTCGATTTATGAACATCCACATGCAGCCGAATTTTGGGTTGACTTGGTCCTCCATTTG
100956633 GATGGTTTTGTAATCAACATAAAGCTCTCAGACCTGTCTAGCA
131 GATGGTTTTGTAATCAACATAAAGCTCTCAGACCTGTCTAGCA
100956676 ATCAATTGCAAATCTCCGGGTAAATCTCCGATTTCTTCAACTCTTCAAGGACCTTGTGTAATTAA
1 ATCAATTGCAAATCTCCGGGTAAATCTCCGATTTCTTCAACTCTTCAAGGACCTTGTGTAATTAA
* *
100956741 ACCAAAATTTGATTTATGAACATCCACATGCAGTCGAATTTTGGGTTGACTTGGTCCTCCATTTG
66 ACCAAAATTCGATTTATGAACATCCACATGCAGCCGAATTTTGGGTTGACTTGGTCCTCCATTTG
*
100956806 GATGGTTTTGTAATCAACATAAAGCTTTCAGACCTGTCTAGCA
131 GATGGTTTTGTAATCAACATAAAGCTCTCAGACCTGTCTAGCA
** *
100956849 ATCAATTGCAAATCTCCAAGTAAATCTTCGATTTCTTCAACTCTTCAAG
1 ATCAATTGCAAATCTCCGGGTAAATCTCCGATTTCTTCAACTCTTCAAG
100956898 TGTAACACCC
Statistics
Matches: 213, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
173 213 1.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (173 bp):
ATCAATTGCAAATCTCCGGGTAAATCTCCGATTTCTTCAACTCTTCAAGGACCTTGTGTAATTAA
ACCAAAATTCGATTTATGAACATCCACATGCAGCCGAATTTTGGGTTGACTTGGTCCTCCATTTG
GATGGTTTTGTAATCAACATAAAGCTCTCAGACCTGTCTAGCA
Found at i:100958409 original size:39 final size:39
Alignment explanation
Indices: 100958291--100958473 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
100958281 TCGTTCAAAC
* * ** * **
100958291 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
100958331 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
100958371 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
100958410 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
100958449 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
100958474 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:100966413 original size:39 final size:39
Alignment explanation
Indices: 100966295--100966477 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
100966285 TCGTTCAAAC
* * ** * **
100966295 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
100966335 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
100966375 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
100966414 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
100966453 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
100966478 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:100971297 original size:21 final size:21
Alignment explanation
Indices: 100971271--100971312 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
100971261 TTGATGGTTG
100971271 AAAATTGAATCAAATCTCTCT
1 AAAATTGAATCAAATCTCTCT
100971292 AAAATTGAATCAAATCTCTCT
1 AAAATTGAATCAAATCTCTCT
100971313 TTCACTTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.19, G:0.05, T:0.33
Consensus pattern (21 bp):
AAAATTGAATCAAATCTCTCT
Found at i:100976663 original size:14 final size:16
Alignment explanation
Indices: 100976632--100976669 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 16
100976622 TTTACATCAT
*
100976632 ATATATCACCTATTTC
1 ATATATCACCTATGTC
100976648 ATATATCA-CT-TGTC
1 ATATATCACCTATGTC
100976662 ATATATCA
1 ATATATCA
100976670 TTATTTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.52
15 2 0.10
16 8 0.38
ACGTcount: A:0.34, C:0.21, G:0.03, T:0.42
Consensus pattern (16 bp):
ATATATCACCTATGTC
Found at i:100980667 original size:78 final size:80
Alignment explanation
Indices: 100980573--100980743 Score: 226
Period size: 78 Copynumber: 2.2 Consensus size: 80
100980563 GGACTAAGAT
* * *
100980573 CCGAAGGCGTTCGTGCGAGTTAATAAA-TCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGTTAAT
1 CCGAAGGCATTTGTGCGAGTTAATAAACT-CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTAAT
100980636 A-AATCC-GGGTTAAG-C
65 ATAA-CCGGGGTT-AGTC
* *
100980651 CCGAAGGCATTTGTGCGAGTTACTAAACTCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTAATAAACTCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTAATA
*
100980716 TAACCGGGGTTTGTC
66 TAACCGGGGTTAGTC
100980731 CCGAAGGCATTTG
1 CCGAAGGCATTTG
100980744 AGCTAGTCGT
Statistics
Matches: 82, Mismatches: 6, Indels: 8
0.85 0.06 0.08
Matches are distributed among these distances:
78 33 0.40
79 28 0.34
80 21 0.26
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCGAGTTAATAAACTCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTAATA
TAACCGGGGTTAGTC
Found at i:100980741 original size:40 final size:39
Alignment explanation
Indices: 100980573--100980712 Score: 219
Period size: 39 Copynumber: 3.6 Consensus size: 39
100980563 GGACTAAGAT
*
100980573 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
*
100980612 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
* *
100980651 CCGAAGGCATTTGTGCGAGTTACTAAA-CTCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAATC-CGGGTTAAG-C
100980691 CCGAAGGCATTCGTGCGAGTTA
1 CCGAAGGCATTCGTGCGAGTTA
100980713 CTATAACCGG
Statistics
Matches: 95, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
38 1 0.01
39 72 0.76
40 22 0.23
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
Found at i:100980765 original size:79 final size:78
Alignment explanation
Indices: 100980573--100980776 Score: 189
Period size: 79 Copynumber: 2.6 Consensus size: 78
100980563 GGACTAAGAT
* * * * * *
100980573 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGTTAATA
1 CCGAAGGCATTTGAGCGAGTCACTAAATCC-GGTTAAGTCCCGAAGGCATTCGTGCGAGTTAATA
100980637 AATCCGGGTTAAGC
65 AATCCGGGTTAAGC
* * * *
100980651 CCGAAGGCATTTGTGCGAGTTACTAAACTCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTA
1 CCGAAGGCATTTGAGCGAGTCACTAAA-TCCGGTTAAGTCCCGAAGGCATTCGTGCGAGTTAATA
*
100980716 TAA-CCGGGGTT-TGTC
65 -AATCC-GGGTTAAG-C
* ** * * *
100980731 CCGAAGGCATTTGAGCTAGTCGTTATATCCGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAGCGAGTCACTAAATCCGGTTAAGTCCCGAAGG
100980777 TACGTGATTC
Statistics
Matches: 105, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
78 31 0.30
79 45 0.43
80 29 0.28
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGAGCGAGTCACTAAATCCGGTTAAGTCCCGAAGGCATTCGTGCGAGTTAATAA
ATCCGGGTTAAGC
Found at i:100986458 original size:161 final size:161
Alignment explanation
Indices: 100986193--100986507 Score: 594
Period size: 161 Copynumber: 2.0 Consensus size: 161
100986183 ATCTCCAGGT
100986193 AAATCTCTGATTTCTTCAACTCTTCAAGGACCTTGTGTAATTAAACCAAAATTTGATTTAAGAAC
1 AAATCTCTGATTTCTTCAACTCTTCAAGGACCTTGTGTAATTAAACCAAAATTTGATTTAAGAAC
100986258 ATCCACATGCAGCCAAATTTTGGGTTGACTTGGTCCTCCATTTGGATGGTTTTGTAATCAACATA
66 ATCCACATGCAGCCAAATTTTGGGTTGACTTGGTCCTCCATTTGGATGGTTTTGTAATCAACATA
*
100986323 AAGCTCTCAGACCTGTCTAGCAATCAATTGC
131 AAGCTCTCAGACCTGTCCAGCAATCAATTGC
* *
100986354 AAATCTCTGATTTCTTCAACTCTTTAAGGACCTTGTGTAATTAAACCAAAATTTGATTTATGAAC
1 AAATCTCTGATTTCTTCAACTCTTCAAGGACCTTGTGTAATTAAACCAAAATTTGATTTAAGAAC
*
100986419 ATCCACATGCAGCCGAATTTTGGGTTGACTTGGTCCTCCATTTGGATGGTTTTGTAATCAACATA
66 ATCCACATGCAGCCAAATTTTGGGTTGACTTGGTCCTCCATTTGGATGGTTTTGTAATCAACATA
100986484 AAGCTCTCAGACCTGTCCAGCAAT
131 AAGCTCTCAGACCTGTCCAGCAAT
100986508 AGTAGATAAT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
161 150 1.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (161 bp):
AAATCTCTGATTTCTTCAACTCTTCAAGGACCTTGTGTAATTAAACCAAAATTTGATTTAAGAAC
ATCCACATGCAGCCAAATTTTGGGTTGACTTGGTCCTCCATTTGGATGGTTTTGTAATCAACATA
AAGCTCTCAGACCTGTCCAGCAATCAATTGC
Found at i:100994687 original size:19 final size:17
Alignment explanation
Indices: 100994659--100994716 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 17
100994649 TTTTAAAAAC
100994659 AATTTAACTTTGATTGAA
1 AATTTAAC-TTGATTGAA
100994677 AATTCTAACTTGATTGAA
1 AATT-TAACTTGATTGAA
*
100994695 ACCATTTCAACTTGATTTAA
1 A--ATTT-AACTTGATTGAA
100994715 AA
1 AA
100994717 GTTGATTGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
18 15 0.43
19 5 0.14
20 15 0.43
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.40
Consensus pattern (17 bp):
AATTTAACTTGATTGAA
Found at i:100994708 original size:20 final size:19
Alignment explanation
Indices: 100994655--100994711 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 19
100994645 CTTGTTTTAA
100994655 AAACAATTT-AACTTTGATTG
1 AAAC-ATTTCAAC-TTGATTG
100994675 AAA-A-TTCTAACTTGATTG
1 AAACATTTC-AACTTGATTG
100994693 AAACCATTTCAACTTGATT
1 AAA-CATTTCAACTTGATT
100994712 TAAAAGTTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
17 2 0.06
18 11 0.34
19 3 0.09
20 13 0.41
21 3 0.09
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (19 bp):
AAACATTTCAACTTGATTG
Found at i:100997520 original size:40 final size:40
Alignment explanation
Indices: 100997430--100997649 Score: 255
Period size: 40 Copynumber: 5.5 Consensus size: 40
100997420 TTTGAATGGT
* * * * * *
100997430 ATCCGGGCTAACTCCCAAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
100997471 ATCCGGGTTAAGTCCAGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
100997511 ATCCAGGTTAATTCCCGAAGACATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
100997551 AT-CGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
100997590 AACCGGGTTAAGTCCCGAGGGCATTTGTGCGAATTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
100997631 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGTTAAGTCCCGAAG
100997650 ACAATCGAGC
Statistics
Matches: 155, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 35 0.23
40 93 0.60
41 27 0.17
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:100997606 original size:79 final size:80
Alignment explanation
Indices: 100997466--100997636 Score: 238
Period size: 79 Copynumber: 2.1 Consensus size: 80
100997456 GTGCTAAGTG
* * *
100997466 ACTAAATCCGGGTTAAGTCCAGAAGGCATTTGTGCGAGTTACTAAATCCAGGTTAATTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCAGAAGGCATTTGTGCGAGTTACCAAAACCAGGTTAAGTCCCGAAG
*
100997531 ACATTTGTGCGAGTT
66 ACATTTGTGCGAATT
* * * *
100997546 ACTAAAT-CGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAGG
1 ACTAAATCCGGGTTAAGTCCAGAAGGCATTTGTGCGAGTTACCAAAACCAGGTTAAGTCCCGAAG
*
100997610 GCATTTGTGCGAATT
66 ACATTTGTGCGAATT
100997625 ACTATAA-CCGGG
1 ACTA-AATCCGGG
100997637 CTATGTCCCG
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 67 0.84
80 13 0.16
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (80 bp):
ACTAAATCCGGGTTAAGTCCAGAAGGCATTTGTGCGAGTTACCAAAACCAGGTTAAGTCCCGAAG
ACATTTGTGCGAATT
Found at i:101001687 original size:28 final size:28
Alignment explanation
Indices: 101001561--101001691 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 28
101001551 TGAATGTGAC
** *
101001561 TGGGCCTAACAGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATAT-AATATGATT
*
101001590 TGGGCCTAATGGGCCATATACAGATGATT
1 TGGGCCTAATGGGCCATATA-ATATGATT
*
101001619 TGGGCCTAATGGGCCATATATAGATGATT
1 TGGGCCTAATGGGCCATATA-ATATGATT
101001648 TGGGCCTAATGGGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATAT-AATATGATT
*
101001676 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
101001692 GATACAGCTA
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
28 17 0.18
29 75 0.81
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (28 bp):
TGGGCCTAATGGGCCATATAATATGATT
Found at i:101019640 original size:2 final size:2
Alignment explanation
Indices: 101019633--101019664 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
101019623 ACCAGAACAG
101019633 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
101019665 GTGTGTGGCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:101030110 original size:20 final size:20
Alignment explanation
Indices: 101030087--101030142 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
101030077 GTAACTTTGA
101030087 TTGCACAATCGTGCCTCTGT
1 TTGCACAATCGTGCCTCTGT
* * *
101030107 TTGCAC-TTCGGTTCCTTTGT
1 TTGCACAATC-GTGCCTCTGT
*
101030127 TTGCACAATCATGCCT
1 TTGCACAATCGTGCCT
101030143 ATTTTTACAC
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
19 2 0.07
20 24 0.86
21 2 0.07
ACGTcount: A:0.14, C:0.29, G:0.18, T:0.39
Consensus pattern (20 bp):
TTGCACAATCGTGCCTCTGT
Found at i:101030111 original size:40 final size:40
Alignment explanation
Indices: 101030066--101030142 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
101030056 CTTGTACGGC
*
101030066 TTTGCACTTAGGTAACTTTGATTGCACAATCGTGCCTCTG
1 TTTGCACTTAGGTAACTTTGATTGCACAATCATGCCTCTG
* ** *
101030106 TTTGCACTTCGGTTCCTTTGTTTGCACAATCATGCCT
1 TTTGCACTTAGGTAACTTTGATTGCACAATCATGCCT
101030143 ATTTTTACAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (40 bp):
TTTGCACTTAGGTAACTTTGATTGCACAATCATGCCTCTG
Found at i:101032498 original size:27 final size:26
Alignment explanation
Indices: 101032438--101032499 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
101032428 ATAAGACTCC
101032438 ATTTTATTAGGATAATTAATATTAAG
1 ATTTTATTAGGATAATTAATATTAAG
* * * *
101032464 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
101032492 ATTTTATT
1 ATTTTATT
101032500 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 14 0.48
28 13 0.45
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:101032522 original size:20 final size:20
Alignment explanation
Indices: 101032494--101032541 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
101032484 ATTTTAGGAT
*
101032494 TTTAT-TTTAATT-ATCTTTA
1 TTTATCTTTAATTAAT-TGTA
101032513 TTTATCTTTAATTAATTGTA
1 TTTATCTTTAATTAATTGTA
101032533 TTTATCTTT
1 TTTATCTTT
101032542 TTAGAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 5 0.19
20 19 0.73
21 2 0.08
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTATCTTTAATTAATTGTA
Found at i:101035563 original size:13 final size:13
Alignment explanation
Indices: 101035545--101035569 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101035535 GGTATAAATT
101035545 CACAGAAAATAAA
1 CACAGAAAATAAA
101035558 CACAGAAAATAA
1 CACAGAAAATAA
101035570 TTTTAAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.16, G:0.08, T:0.08
Consensus pattern (13 bp):
CACAGAAAATAAA
Found at i:101044432 original size:24 final size:25
Alignment explanation
Indices: 101044378--101044432 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
101044368 CTTATCTCAC
*
101044378 ATGAGCTTCCCATTATATAACTTAG
1 ATGAGCTTCCCATTACATAACTTAG
* ** *
101044403 AAGAGCTTCCGTTTACAT-ACTTAT
1 ATGAGCTTCCCATTACATAACTTAG
101044427 ATGAGC
1 ATGAGC
101044433 ATAGATGTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
24 10 0.42
25 14 0.58
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.35
Consensus pattern (25 bp):
ATGAGCTTCCCATTACATAACTTAG
Found at i:101050813 original size:81 final size:81
Alignment explanation
Indices: 101050662--101050814 Score: 227
Period size: 81 Copynumber: 1.9 Consensus size: 81
101050652 TGATCATTAC
* ** * *
101050662 AGGGTTCGCCACAGAGGCTACCCCTTCATGATTTGCCACAAAGGTGTTCCTTTCATATTGTGCCA
1 AGGGTTCGCCACAAAGGCTACCCCTTCATGATTCACCACAAAGGCGTTCCTTTCATATTGAGCCA
101050727 TATAGGCTATCATTGT
66 TATAGGCTATCATTGT
* *
101050743 AGGGTTCGCCACAAAGGTTACCCCTTCATGATTCACCACAAAGGCGTTCCTTTCATCTTGAGCC-
1 AGGGTTCGCCACAAAGGCTACCCCTTCATGATTCACCACAAAGGCGTTCCTTTCATATTGAGCCA
101050807 TCATAGGC
66 T-ATAGGC
101050815 ATTCCTTTCC
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
80 1 0.02
81 63 0.98
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (81 bp):
AGGGTTCGCCACAAAGGCTACCCCTTCATGATTCACCACAAAGGCGTTCCTTTCATATTGAGCCA
TATAGGCTATCATTGT
Found at i:101053291 original size:68 final size:70
Alignment explanation
Indices: 101053219--101053416 Score: 285
Period size: 71 Copynumber: 2.8 Consensus size: 70
101053209 ACACCCTGTA
* * * *
101053219 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
101053281 ATAAAT
65 ATAAAT
*
101053287 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
*
101053352 GTAAAT
65 ATAAAT
*
101053358 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
101053417 AGACAAATCG
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.03
70 1 0.01
71 92 0.77
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:101053342 original size:71 final size:71
Alignment explanation
Indices: 101053253--101053416 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
101053243 GAGATGTATC
101053253 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
101053318 AGGACA
66 AGGACA
*
101053324 CCATGTAGACAAGAGAGCTACGTGAAAGGTAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
101053389 AGGACA
66 AGGACA
101053395 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
101053417 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:101058620 original size:2 final size:2
Alignment explanation
Indices: 101058613--101058637 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
101058603 TGTTATGATT
101058613 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
101058638 GTGTGTGCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:101058703 original size:39 final size:39
Alignment explanation
Indices: 101058660--101058789 Score: 208
Period size: 39 Copynumber: 3.3 Consensus size: 39
101058650 TAATGGAGAA
*
101058660 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
101058699 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
101058738 TTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
101058777 TTATATCCGGGCT
1 TTATATCCGGGCT
101058790 TAAAGTACCG
Statistics
Matches: 86, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
39 74 0.86
40 12 0.14
ACGTcount: A:0.18, C:0.22, G:0.29, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:101058809 original size:40 final size:39
Alignment explanation
Indices: 101058660--101058816 Score: 174
Period size: 39 Copynumber: 4.0 Consensus size: 39
101058650 TAATGGAGAA
* * *
101058660 TTATATCTGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAAGTCCCGCAGG-ATTTGTGCTGGTG
* *
101058699 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAAGTCCCGCAGG-ATTTGTGCTGGTG
* *
101058738 TTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTA
1 TTATATCCGGGCTAAAGTCCCGCAGGATTTGTGCTGGTG
* * * *
101058777 TTATATCCGGGCTTAAAGTACCGCATGTTTTGTGGTGGTG
1 TTATATCCGGGC-TAAAGTCCCGCAGGATTTGTGCTGGTG
101058817 ATTGGATTTG
Statistics
Matches: 106, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 73 0.69
40 33 0.31
ACGTcount: A:0.18, C:0.20, G:0.30, T:0.32
Consensus pattern (39 bp):
TTATATCCGGGCTAAAGTCCCGCAGGATTTGTGCTGGTG
Found at i:101072933 original size:47 final size:47
Alignment explanation
Indices: 101072881--101073177 Score: 468
Period size: 47 Copynumber: 6.3 Consensus size: 47
101072871 GTACAAGATA
*
101072881 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
101072928 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * * * *
101072975 TATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
101073022 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
101073069 TATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
101073116 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
101073163 TATAAATGTGATAAG
1 TATATATGTGATAAG
101073178 TCCCGAAGGG
Statistics
Matches: 233, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 233 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:101076939 original size:25 final size:25
Alignment explanation
Indices: 101076905--101076954 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
101076895 ATAGTAAACA
*
101076905 TGAATTTCATGAAAAGCCTTTGTGG
1 TGAATTTCATGAAAAGCCTCTGTGG
*
101076930 TGAATTTCATGGAAAGCCTCTGTGG
1 TGAATTTCATGAAAAGCCTCTGTGG
101076955 CAAATTCACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (25 bp):
TGAATTTCATGAAAAGCCTCTGTGG
Found at i:101076960 original size:25 final size:25
Alignment explanation
Indices: 101076907--101076960 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
101076897 AGTAAACATG
* **
101076907 AATTTCATGAAAAGCCTTTGTGGTG
1 AATTTCATGAAAAGCCTCTGTGGCA
*
101076932 AATTTCATGGAAAGCCTCTGTGGCA
1 AATTTCATGAAAAGCCTCTGTGGCA
101076957 AATT
1 AATT
101076961 CACTTGAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (25 bp):
AATTTCATGAAAAGCCTCTGTGGCA
Found at i:101082452 original size:2 final size:2
Alignment explanation
Indices: 101082445--101082482 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
101082435 ATGCATACAT
* *
101082445 TA TA TA TA TA TA TA TA TA TA TA TA TG TA T- TA TA CA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
101082483 TACAAAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:101083155 original size:81 final size:81
Alignment explanation
Indices: 101082961--101083163 Score: 217
Period size: 81 Copynumber: 2.5 Consensus size: 81
101082951 TAAATCTCAG
* * * *
101082961 AAAGGGAGCCCACGAAGGGTTCTCAAGAGTGGTTATACCCCTTTGCATGTTTGTATATCCGTAAA
1 AAAGAGAGCCCACGAAGGGTTCTCGAGAGTGGTTATACCCCTTTCCATGTTTGTATATCCATAAA
*
101083026 ATGAATAATGTAAGAT
66 ATGAATAATGTAAGAC
* ** * * * * * * *
101083042 AAAGAGAACCCACGAACTGTTCACGTGGGTGGTTTTATCTCTTTCCATGTTTGTATATCCATATA
1 AAAGAGAGCCCACGAAGGGTTCTCGAGAGTGGTTATACCCCTTTCCATGTTTGTATATCCATAAA
* * *
101083107 ATGTATATTGTTAGAC
66 ATGAATAATGTAAGAC
* * *
101083123 AAAGAGAGCCCACAAAGGGTTCTTGCGAGTGGTTATACCCC
1 AAAGAGAGCCCACGAAGGGTTCTCGAGAGTGGTTATACCCC
101083164 CTGACATGTA
Statistics
Matches: 93, Mismatches: 29, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
81 93 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (81 bp):
AAAGAGAGCCCACGAAGGGTTCTCGAGAGTGGTTATACCCCTTTCCATGTTTGTATATCCATAAA
ATGAATAATGTAAGAC
Found at i:101088073 original size:49 final size:49
Alignment explanation
Indices: 101088001--101088249 Score: 444
Period size: 49 Copynumber: 5.1 Consensus size: 49
101087991 ACATAATAAT
*
101088001 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
* *
101088050 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTACAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
101088099 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
101088148 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
* * *
101088197 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
101088246 ATAT
1 ATAT
101088250 ATGTGGTAAA
Statistics
Matches: 192, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 192 1.00
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.29
Consensus pattern (49 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
Done.