Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 323 of 433
Found at i:101088153 original size:27 final size:27
Alignment explanation
Indices: 101088123--101088205 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
101088113 CTAATGGCCG
101088123 ATGTGATGAATGTGAAAATGTATACAT
1 ATGTGATGAATGTGAAAATGTATACAT
** * **
101088150 ATGTGAT-AA-G-GCCTAATG---GCCG
1 ATGTGATGAATGTG-AAAATGTATACAT
101088172 ATGTGATGAATGTGAAAATGTATACAT
1 ATGTGATGAATGTGAAAATGTATACAT
101088199 ATGTGAT
1 ATGTGAT
101088206 AAGGCCTAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
22 8 0.21
23 2 0.05
24 6 0.15
25 6 0.15
26 2 0.05
27 15 0.38
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.31
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAATGTATACAT
Found at i:101088373 original size:37 final size:36
Alignment explanation
Indices: 101088323--101088404 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 36
101088313 AGAAATATGT
101088323 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTACG
1 TCCGGGT-AGACCCGATGACTACGTGTGGAGATTACG
*
101088360 TCCGGGTACGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTA-GACCCGATGACTACGTGTGGAGATTACG
101088397 TCCGGGTA
1 TCCGGGTA
101088405 AGACTTCGTA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
36 1 0.02
37 42 0.98
ACGTcount: A:0.21, C:0.22, G:0.34, T:0.23
Consensus pattern (36 bp):
TCCGGGTAGACCCGATGACTACGTGTGGAGATTACG
Found at i:101089963 original size:18 final size:18
Alignment explanation
Indices: 101089940--101089976 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
101089930 ACACTCTTGA
101089940 CGTTAGCATGTCAAGAGG
1 CGTTAGCATGTCAAGAGG
*
101089958 CGTTAGCATGTCGAGAGG
1 CGTTAGCATGTCAAGAGG
101089976 C
1 C
101089977 AGTCATAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (18 bp):
CGTTAGCATGTCAAGAGG
Found at i:101095478 original size:23 final size:23
Alignment explanation
Indices: 101095420--101095608 Score: 306
Period size: 23 Copynumber: 8.1 Consensus size: 23
101095410 CCTAGCCTCT
*
101095420 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
101095443 TTTTTATAACTGGGGCATGAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
101095467 TTTAATAACTGGGGCATGAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101095490 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101095513 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
101095536 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
101095560 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
101095583 TTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101095606 TTT
1 TTT
101095609 TGCACTTCCT
Statistics
Matches: 156, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
23 114 0.73
24 42 0.27
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:101095582 original size:93 final size:93
Alignment explanation
Indices: 101095420--101095608 Score: 333
Period size: 93 Copynumber: 2.0 Consensus size: 93
101095410 CCTAGCCTCT
* * *
101095420 TTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATGAGCCCTTTAATAACTGGGGCATG
1 TTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
*
101095485 AGCCCTTTAATAACTGGGGCATAAGCCC
66 AGCCCTTTAATAACTAGGGCATAAGCCC
*
101095513 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
1 TTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
101095578 AGCCCTTTAATAACTAGGGCATAAGCCC
66 AGCCCTTTAATAACTAGGGCATAAGCCC
101095606 TTT
1 TTT
101095609 TGCACTTCCT
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 91 1.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (93 bp):
TTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
AGCCCTTTAATAACTAGGGCATAAGCCC
Found at i:101095609 original size:70 final size:70
Alignment explanation
Indices: 101095420--101095610 Score: 312
Period size: 70 Copynumber: 2.7 Consensus size: 70
101095410 CCTAGCCTCT
* * * *
101095420 TTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATGAGCCC-TTTAATAACTGGGGCAT
1 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAT
*
101095484 GAGCCC
65 AAGCCC
101095490 TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
101095555 AGCCC
66 AGCCC
*
101095560 TTTAATAACTGGGGCATAAGCCCTTTAATAACTAGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTG
101095611 CACTTCCTCC
Statistics
Matches: 114, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
69 21 0.18
70 93 0.82
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (70 bp):
TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
AGCCC
Found at i:101095681 original size:9 final size:9
Alignment explanation
Indices: 101095667--101095723 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
101095657 ATCTCATGTG
101095667 CATATCATA
1 CATATCATA
101095676 CATATCATA
1 CATATCATA
101095685 TGCATATCATA
1 --CATATCATA
* *
101095696 CATGTCATGTG
1 CATATCA--TA
101095707 CATATCATA
1 CATATCATA
101095716 CATATCAT
1 CATATCAT
101095724 GTTTATCAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 24 0.60
11 16 0.40
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:101095683 original size:20 final size:20
Alignment explanation
Indices: 101095655--101095725 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
101095645 GCATTTATGA
*
101095655 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
101095675 ACATATCATATGCATATCAT
1 ACATATCATGTGCATATCAT
*
101095695 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
101095715 ACATATCATGT
1 ACATATCATGT
101095726 TTATCAAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:101097556 original size:29 final size:29
Alignment explanation
Indices: 101097523--101097624 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
101097513 GTGATGAGAT
101097523 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
101097552 TGGCACTAAGTGTGCGTGCTGGAAATAT-
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
101097580 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
101097609 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
101097625 AGCTCGGAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 25 0.38
29 40 0.62
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:101105402 original size:29 final size:29
Alignment explanation
Indices: 101105369--101105472 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
101105359 TGGTGACGAG
101105369 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGCGTGCTGGAAATAT
101105398 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGCGTGCTGGAAATAT
** *
101105427 ATGGCACTAAGTGTGCAAGCTGGAAAAAT
1 ATGGCACTAAGTGTGCGTGCTGGAAATAT
* **
101105456 ACGGCACTGGGTGTGCG
1 ATGGCACTAAGTGTGCG
101105473 AGCTCGGAGG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 68 1.00
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.24
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGTGCTGGAAATAT
Found at i:101113255 original size:29 final size:28
Alignment explanation
Indices: 101113222--101113322 Score: 132
Period size: 29 Copynumber: 3.6 Consensus size: 28
101113212 GTGACGAGAT
101113222 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAA-ATA
101113251 TGGCACTAAGTGTGCGTGCTGG-AAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAATA
**
101113278 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGG-AAAATA
* **
101113307 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
101113323 AGTCGGAGGG
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
27 23 0.36
28 2 0.03
29 39 0.61
ACGTcount: A:0.27, C:0.16, G:0.34, T:0.24
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGTGCTGGAAAATA
Found at i:101113286 original size:27 final size:27
Alignment explanation
Indices: 101113222--101113302 Score: 126
Period size: 27 Copynumber: 2.9 Consensus size: 27
101113212 GTGACGAGAT
101113222 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGG-AA-ATA
101113251 TGGCACTAAGTGTGCGTGCTGGAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATA
**
101113278 TGGCACTAAGTGTGCAAGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
101113303 AATACGGCAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
27 26 0.52
28 2 0.04
29 22 0.44
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (27 bp):
TGGCACTAAGTGTGCGTGCTGGAAATA
Found at i:101121101 original size:29 final size:29
Alignment explanation
Indices: 101121068--101121170 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
101121058 GTGATGAGAT
101121068 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
101121097 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
101121126 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
101121155 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
101121171 AGTTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:101123634 original size:27 final size:27
Alignment explanation
Indices: 101123543--101123626 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
101123533 GGGCATATTC
*
101123543 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCATACAGGGGCT-TTACG
*
101123570 GTCACTTTACCTTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
*
101123597 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
101123624 GTC
1 GTC
101123627 TTTTTACCTA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:101123643 original size:27 final size:26
Alignment explanation
Indices: 101123543--101123636 Score: 118
Period size: 27 Copynumber: 3.5 Consensus size: 26
101123533 GGGCATATTC
*
101123543 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACC-TACAGGGGCT-TTACG
101123570 GTCACTTTACCTTACAGGGGCTTTACG
1 GTCACTTTACC-TACAGGGGCTTTACG
101123597 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTA-CCTACAGGGGCTTTACG
**
101123624 GTCTTTTTACCTA
1 GTCACTTTACCTA
101123637 ATAGGGGTAT
Statistics
Matches: 61, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
26 4 0.07
27 54 0.89
28 3 0.05
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGCTTTACG
Found at i:101123718 original size:27 final size:27
Alignment explanation
Indices: 101123688--101123795 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
101123678 GTAAATCTAC
101123688 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
101123715 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
101123741 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
101123771 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
101123796 ACAAATTGAG
Statistics
Matches: 66, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.02
27 40 0.61
28 7 0.11
29 17 0.26
30 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:101123793 original size:56 final size:54
Alignment explanation
Indices: 101123685--101123849 Score: 163
Period size: 56 Copynumber: 3.0 Consensus size: 54
101123675 TTGGTAAATC
* * *
101123685 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTT
1 TACAAATCAAGGGTATTTCAGTAA-TTTGTAAACCAGTGGTATTT-TGGTAATTTT
* * * *
101123740 TAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTCAGTAA-TTTGTAAACCAGTGGTATTTTGGTAATTTT
** * **
101123795 TACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTT-GTAAACCAGTGGTATTTTGGTAATTTT
101123850 ACCAACTAGG
Statistics
Matches: 90, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
53 3 0.03
54 34 0.38
55 17 0.19
56 36 0.40
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCAGTAATTTGTAAACCAGTGGTATTTTGGTAATTTT
Found at i:101123801 original size:27 final size:27
Alignment explanation
Indices: 101123771--101123878 Score: 130
Period size: 27 Copynumber: 4.0 Consensus size: 27
101123761 GTAACTTTGT
101123771 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * *
101123798 AAAT-TGAGGGTATTTCGGTAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* *
101123825 AAACCAGTGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
*
101123852 CAA-CTAGGGGTATTTTGGTAATTTTAC
1 AAATC-AGGGGTATTTTGGTAATTTTAC
101123879 TGATCAAGGG
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
26 2 0.03
27 65 0.96
28 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:101126159 original size:47 final size:47
Alignment explanation
Indices: 101126101--101127008 Score: 1521
Period size: 47 Copynumber: 19.3 Consensus size: 47
101126091 GTATGAGATA
101126101 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
101126148 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
101126195 TATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
101126242 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
101126289 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGCAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
101126336 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
101126383 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
101126430 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
101126477 TATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
101126524 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
101126571 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTAAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
101126618 TATATATTTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
101126665 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
101126712 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
101126759 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
101126806 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
101126853 TATATATGTGATAAGGCCGAGTGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
101126900 CATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTG
* * * * *
101126947 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTT
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
101126994 TATAAATGTGATAAG
1 TATATATGTGATAAG
101127009 TCCCGAAGGG
Statistics
Matches: 808, Mismatches: 51, Indels: 4
0.94 0.06 0.00
Matches are distributed among these distances:
46 1 0.00
47 806 1.00
48 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:101126908 original size:25 final size:25
Alignment explanation
Indices: 101126880--101126958 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
101126870 CGAGTGGCCC
101126880 ATGTGATGAATGTGAAAGTGCATAT
1 ATGTGATGAATGTGAAAGTGCATAT
* * *
101126905 ATGTGAT-AAGGCTGAATG-GC-CA-
1 ATGTGATGAATG-TGAAAGTGCATAT
*
101126927 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGCATAT
101126952 ATGTGAT
1 ATGTGAT
101126959 AAGGCCGAGT
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
22 12 0.29
23 5 0.12
24 6 0.14
25 19 0.45
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGCATAT
Found at i:101129302 original size:41 final size:41
Alignment explanation
Indices: 101129237--101129318 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
101129227 TATTCCAGTG
* *
101129237 ATCATCAACCATTGGTCTACGTACGAGGAACGAATCGAGTT
1 ATCATCAACCATTGATCCACGTACGAGGAACGAATCGAGTT
*
101129278 ATCATCAACCATTGATCCATGTACGAGGAACGAATCGAGTT
1 ATCATCAACCATTGATCCACGTACGAGGAACGAATCGAGTT
101129319 GAAACAATGG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (41 bp):
ATCATCAACCATTGATCCACGTACGAGGAACGAATCGAGTT
Found at i:101130419 original size:143 final size:141
Alignment explanation
Indices: 101130163--101130450 Score: 436
Period size: 143 Copynumber: 2.0 Consensus size: 141
101130153 ATATCATATT
* * * *
101130163 TCTTGATATTTTGTGTAGACTACAATAGATAAAAGTGTGATATCTCATATCAACTTATTCGAGCA
1 TCTTGATATTCTGTGTAGACTACAATAAAAAAAAGTGTGATATCTCATATCAACTGATTCGAGCA
* * * * *
101130228 TGGCCATGCATTTCTAGTCTCATTCCATCAAGAGGCCTAAGATATTGCTCCCATTATGTACGAAG
66 TGCCCATGCATTTCCAGTCTCACTCAATCAAGAGGCCTAAGATATTGCTCCCATTATGTAAG-AG
101130293 GG-CAAATCCTA
130 GGACAAATCCTA
*
101130304 TCTTGATATTCTGTGTAGACTACAATAAAAAAGTAAGTGTGATATCTCCTATCAACTGATTCGCA
1 TCTTGATATTCTGTGTAGACTACAATAAAAAA--AAGTGTGATATCTCATATCAACTGATTCG-A
101130369 -CATGCCCATGCATTTCCAGTCTCACTCAATCAAGAGGCCTAAGATATTGCTCCCATTATGTAAG
63 GCATGCCCATGCATTTCCAGTCTCACTCAATCAAGAGGCCTAAGATATTGCTCCCATTATGTAAG
101130433 AGGGACAAATCCTA
128 AGGGACAAATCCTA
101130447 TCTT
1 TCTT
101130451 AATCAACCAT
Statistics
Matches: 133, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
141 29 0.22
142 4 0.03
143 99 0.74
144 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (141 bp):
TCTTGATATTCTGTGTAGACTACAATAAAAAAAAGTGTGATATCTCATATCAACTGATTCGAGCA
TGCCCATGCATTTCCAGTCTCACTCAATCAAGAGGCCTAAGATATTGCTCCCATTATGTAAGAGG
GACAAATCCTA
Found at i:101135264 original size:47 final size:47
Alignment explanation
Indices: 101135213--101135310 Score: 151
Period size: 47 Copynumber: 2.1 Consensus size: 47
101135203 TTTAGGATTA
* *
101135213 AATGTGATGAATGTGAACATGCATATGTCTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATCTGATAAAGCCGAATGGCC
* * *
101135260 AATGTGATGAATGTGAACATGCATATATGTGGTAAAGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATCTGATAAAGCCGAATGGCC
101135307 AATG
1 AATG
101135311 CGAAATGTGT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.27
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATCTGATAAAGCCGAATGGCC
Found at i:101135340 original size:46 final size:46
Alignment explanation
Indices: 101135284--101135466 Score: 276
Period size: 46 Copynumber: 4.0 Consensus size: 46
101135274 GAACATGCAT
*
101135284 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
101135330 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTTTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
101135376 ATATAAGGTAAAGTCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * * *
101135422 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
101135467 TGTATATATG
Statistics
Matches: 123, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 123 1.00
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:101137648 original size:11 final size:11
Alignment explanation
Indices: 101137632--101137660 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
101137622 ATGAAATGGA
101137632 TTAAATTTATG
1 TTAAATTTATG
101137643 TTAAATTTATG
1 TTAAATTTATG
101137654 TTAAATT
1 TTAAATT
101137661 CATTTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (11 bp):
TTAAATTTATG
Found at i:101155262 original size:14 final size:14
Alignment explanation
Indices: 101155243--101155284 Score: 84
Period size: 14 Copynumber: 3.0 Consensus size: 14
101155233 CATCAAATAC
101155243 TTCAAACTCTTGTG
1 TTCAAACTCTTGTG
101155257 TTCAAACTCTTGTG
1 TTCAAACTCTTGTG
101155271 TTCAAACTCTTGTG
1 TTCAAACTCTTGTG
101155285 GTCGATAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.43
Consensus pattern (14 bp):
TTCAAACTCTTGTG
Found at i:101161595 original size:27 final size:28
Alignment explanation
Indices: 101161547--101161614 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
101161537 TAGTGAGTCT
*
101161547 GCACAC-TAGTGCTATATAATC-AACTC
1 GCACACTTAGTGCTACATAATCAAACTC
*
101161573 GCACACTTAGTGCTACATGATCAAACTC
1 GCACACTTAGTGCTACATAATCAAACTC
101161601 GCACACTTAGTGCT
1 GCACACTTAGTGCT
101161615 GTACAAGTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 6 0.16
27 13 0.34
28 19 0.50
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (28 bp):
GCACACTTAGTGCTACATAATCAAACTC
Found at i:101163963 original size:41 final size:41
Alignment explanation
Indices: 101163917--101164004 Score: 122
Period size: 41 Copynumber: 2.1 Consensus size: 41
101163907 TATCACCCTA
* * *
101163917 TCTCTAGGCGTGCAATCAGTTCCGCTTAATTACGATAATTT
1 TCTCTAGGCGTGCAATCAGCTCCACTTAATTACGACAATTT
* *
101163958 TCTCTAGGTGTGCAATCAGCTCCACTTAATTATGACAATTT
1 TCTCTAGGCGTGCAATCAGCTCCACTTAATTACGACAATTT
101163999 TACTCT
1 T-CTCT
101164005 TAGACAGGGT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
41 37 0.90
42 4 0.10
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.38
Consensus pattern (41 bp):
TCTCTAGGCGTGCAATCAGCTCCACTTAATTACGACAATTT
Found at i:101166169 original size:38 final size:38
Alignment explanation
Indices: 101166120--101166384 Score: 278
Period size: 38 Copynumber: 7.0 Consensus size: 38
101166110 ACAATTACAT
* * *
101166120 CGGCACGAAGCCTGCTAGGAACAGAACCCGAATAACAC
1 CGGCACAAAGCCTGCTAGGCACAGAGCCCGAATAACAC
101166158 CGGCACAAAGCCTGCTAGGCACAGAGCCCGAATAACAC
1 CGGCACAAAGCCTGCTAGGCACAGAGCCCGAATAACAC
* * * ** *
101166196 CGACACAAAGCCTACTAGGTACAGAGCCTAAATAACAT
1 CGGCACAAAGCCTGCTAGGCACAGAGCCCGAATAACAC
* * * * *
101166234 TGGCACAAAGCCTACTAGGCATAGAGCCTGAATATCAC
1 CGGCACAAAGCCTGCTAGGCACAGAGCCCGAATAACAC
* * * * * *
101166272 CGGCACATAGCCTACCAGGCACAGAGCCGGAATATCAT
1 CGGCACAAAGCCTGCTAGGCACAGAGCCCGAATAACAC
* * * * *
101166310 CGGCACACAGCTTGCTAGGCACAGAGCTCAAATATCAC
1 CGGCACAAAGCCTGCTAGGCACAGAGCCCGAATAACAC
* * *
101166348 CGACACAAAGCCTGCTAGGCATATAGCCCGAATAACA
1 CGGCACAAAGCCTGCTAGGCACAGAGCCCGAATAACA
101166385 TTACAATTCT
Statistics
Matches: 189, Mismatches: 38, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 189 1.00
ACGTcount: A:0.35, C:0.30, G:0.21, T:0.13
Consensus pattern (38 bp):
CGGCACAAAGCCTGCTAGGCACAGAGCCCGAATAACAC
Found at i:101166328 original size:114 final size:114
Alignment explanation
Indices: 101166116--101166384 Score: 315
Period size: 114 Copynumber: 2.4 Consensus size: 114
101166106 TGATACAATT
* * * * * *
101166116 ACATCGGCACGAAGCCTGCTAGGAACAGAACCCGAATAACACCGGCACAAAGCCTGCTAGGCACA
1 ACATCGGCACAAAGCCTGCTAGGCATAGAGCCCGAATAACACCGGCACAAAGCCTACCAGGCACA
*
101166181 GAGCCCGAATAACACCGACACAAAGCCTACTAGGTACAGAGC-CTAAATA
66 GAGCCCGAATAACACCGACACAAAGCCTACTAGGCACAGAGCTC-AAATA
* * * * *
101166230 ACATTGGCACAAAGCCTACTAGGCATAGAGCCTGAATATCACCGGCACATAGCCTACCAGGCACA
1 ACATCGGCACAAAGCCTGCTAGGCATAGAGCCCGAATAACACCGGCACAAAGCCTACCAGGCACA
* * * * * * *
101166295 GAGCCGGAATATCATCGGCACACAGCTTGCTAGGCACAGAGCTCAAATA
66 GAGCCCGAATAACACCGACACAAAGCCTACTAGGCACAGAGCTCAAATA
* * * *
101166344 TCACCGACACAAAGCCTGCTAGGCATATAGCCCGAATAACA
1 ACATCGGCACAAAGCCTGCTAGGCATAGAGCCCGAATAACA
101166385 TTACAATTCT
Statistics
Matches: 127, Mismatches: 27, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
114 126 0.99
115 1 0.01
ACGTcount: A:0.36, C:0.30, G:0.21, T:0.13
Consensus pattern (114 bp):
ACATCGGCACAAAGCCTGCTAGGCATAGAGCCCGAATAACACCGGCACAAAGCCTACCAGGCACA
GAGCCCGAATAACACCGACACAAAGCCTACTAGGCACAGAGCTCAAATA
Found at i:101169026 original size:30 final size:29
Alignment explanation
Indices: 101168932--101169033 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
101168922 TATAGTGAAT
* * *
101168932 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
101168961 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
101168989 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
101169019 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
101169034 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:101176917 original size:30 final size:29
Alignment explanation
Indices: 101176823--101176924 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
101176813 TATAGTGAAT
* * *
101176823 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
101176852 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
101176880 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
101176910 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
101176925 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:101185997 original size:13 final size:12
Alignment explanation
Indices: 101185966--101186005 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
101185956 CGTGCAAAAG
**
101185966 AAAAATAACCAT
1 AAAAATAATAAT
101185978 AAAAATAATAAT
1 AAAAATAATAAT
101185990 AAATAATAATAAT
1 AAA-AATAATAAT
101186003 AAA
1 AAA
101186006 GAAAATTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 13 0.52
13 12 0.48
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAAATAATAAT
Found at i:101187737 original size:17 final size:18
Alignment explanation
Indices: 101187704--101187743 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
101187694 TTTTTTTTAG
101187704 CAAAA-CAAAATATTTTT
1 CAAAATCAAAATATTTTT
101187721 CAAAATCAAAATA-TTTT
1 CAAAATCAAAATATTTTT
101187738 CAAAAT
1 CAAAAT
101187744 TTTGATCTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (18 bp):
CAAAATCAAAATATTTTT
Found at i:101190174 original size:377 final size:377
Alignment explanation
Indices: 101189480--101190190 Score: 1332
Period size: 377 Copynumber: 1.9 Consensus size: 377
101189470 TTTTTGAAAA
101189480 AGTGTTCTAGAAAACTTAATTTTAGGAAAAGGACTGATTTGCGATAGAGTCAAAATTATGAGCAT
1 AGTGTTCTAGAAAACTTAATTTTAGGAAAAGGACTGATTTGCGATAGAGTCAAAATTATGAGCAT
*
101189545 TTATGTTGTAGTTTTACCAAAATTTTAAAATAGACCTATTTCTTTCCCCTCACCTTCATTTTTTC
66 TTATGTTGTAGTTTTACCAAAATTTTAAAATAGACCTATTTCTTTCCCCCCACCTTCATTTTTTC
*
101189610 GCTAAAGTCTTCTCCATCTTTATGCTTTAGCTATCCCTTCCTCCCTTAGCTCCTCTATTTCATTT
131 GCGAAAGTCTTCTCCATCTTTATGCTTTAGCTATCCCTTCCTCCCTTAGCTCCTCTATTTCATTT
101189675 TTTTTCATCAAACCTTAATTCAATTGATTTCCTCCATTTCCATAGCATTAATCTTCATAGCAATT
196 TTTTTCATCAAACCTTAATTCAATTGATTTCCTCCATTTCCATAGCATTAATCTTCATAGCAATT
* * *
101189740 TCAAGAAAAACACTCAAGATACTATTAATTTCTTCATCTTTCTCACTTCTGGGTTTCTCGACTTT
261 TCAAGAAAAACACTCAAAATACTATTAATTTCTTCATCTTCCTCACTTCTAGGTTTCTCGACTTT
101189805 GCATAAAAAAATCTATGTCTTTCTAGAAAACGTGTTCTAGAAATTGTGATAG
326 GCATAAAAAAATCTATGTCTTTCTAGAAAACGTGTTCTAGAAATTGTGATAG
* *
101189857 AGTGTTCTAGAAAACTTAATTTTAGGAAAAGGACTGATTTGCGATAGAGTCAATATTGTGAGCAT
1 AGTGTTCTAGAAAACTTAATTTTAGGAAAAGGACTGATTTGCGATAGAGTCAAAATTATGAGCAT
* *
101189922 TTATGTTGTAGTTTTACCAAATTTTTAAAATAGACCTATTTCTTTCCCCCCACCTTCATTTTTTT
66 TTATGTTGTAGTTTTACCAAAATTTTAAAATAGACCTATTTCTTTCCCCCCACCTTCATTTTTTC
*
101189987 GCGAAAGTTTTCTCCATCTTTATGCTTTAGCTATCCCTTCCTCCCTTAGCTCCTCTATTTCATTT
131 GCGAAAGTCTTCTCCATCTTTATGCTTTAGCTATCCCTTCCTCCCTTAGCTCCTCTATTTCATTT
101190052 TTTTTCATCAAACCTTAATTCAATTGATTTCCTCCATTTCCATAGCATTAATCTTCATAGCAATT
196 TTTTTCATCAAACCTTAATTCAATTGATTTCCTCCATTTCCATAGCATTAATCTTCATAGCAATT
101190117 TCAAGAAAAACACTCAAAATACTATTAATTTCTTCATCTTCCTCACTTCTAGGTTTCTCGACTTT
261 TCAAGAAAAACACTCAAAATACTATTAATTTCTTCATCTTCCTCACTTCTAGGTTTCTCGACTTT
101190182 GCATAAAAA
326 GCATAAAAA
101190191 TCTACATTTT
Statistics
Matches: 324, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
377 324 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.40
Consensus pattern (377 bp):
AGTGTTCTAGAAAACTTAATTTTAGGAAAAGGACTGATTTGCGATAGAGTCAAAATTATGAGCAT
TTATGTTGTAGTTTTACCAAAATTTTAAAATAGACCTATTTCTTTCCCCCCACCTTCATTTTTTC
GCGAAAGTCTTCTCCATCTTTATGCTTTAGCTATCCCTTCCTCCCTTAGCTCCTCTATTTCATTT
TTTTTCATCAAACCTTAATTCAATTGATTTCCTCCATTTCCATAGCATTAATCTTCATAGCAATT
TCAAGAAAAACACTCAAAATACTATTAATTTCTTCATCTTCCTCACTTCTAGGTTTCTCGACTTT
GCATAAAAAAATCTATGTCTTTCTAGAAAACGTGTTCTAGAAATTGTGATAG
Found at i:101190862 original size:181 final size:180
Alignment explanation
Indices: 101190554--101190905 Score: 519
Period size: 181 Copynumber: 1.9 Consensus size: 180
101190544 TTCTCTCTTT
* *
101190554 CCAAACACCATTTTTCTTCTTAAAAACACATGGTTGGCTCATTTCATCTACAAGATTTTCCATTA
1 CCAAACACCATTTTTCCTCTTAAAAACACATGGTTGGCTCATTTCATCTACAAGAATTTCCATTA
* * * * *
101190619 CCATGATTATAATCATGCTTTTGTGTATTTCTTGTAAATCCACACTATACTTTTAGCTTAAAATC
66 CCATGATTATAATCATGCTTTTGTGTATTTCTTGTAAAACCACACCACACTTTCAACTTAAAATC
* *
101190684 ATTGTTTTTTTTTCTCC-ACTGTCGGCTGCCTTTTTTGCTCTCATTTTCATA
131 ATTG--TTTTTTTCCCCTACTATCGGCTGCCTTTTTTGCTCTCATTTTCATA
* * *
101190735 CCAAACACCATTTTTCCTCTTCAAAACACATGGTTGGCTCATTTCATCTGCAAGAATTTGCATTA
1 CCAAACACCATTTTTCCTCTTAAAAACACATGGTTGGCTCATTTCATCTACAAGAATTTCCATTA
* *
101190800 CCATTATTATAATCATGCTTTTGTGTAATTT-TTGTAAAACCCCACCACACTTTCAACTTAAAAT
66 CCATGATTATAATCATGCTTTTGTGT-ATTTCTTGTAAAACCACACCACACTTTCAACTTAAAAT
* *
101190864 CATTGTTTTTTTCCCCTACTATTGGCTGCCTTTTTTTCTCTC
130 CATTGTTTTTTTCCCCTACTATCGGCTGCCTTTTTTGCTCTC
101190906 TTGCTAAACA
Statistics
Matches: 153, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
179 10 0.07
180 22 0.14
181 117 0.76
182 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.09, T:0.43
Consensus pattern (180 bp):
CCAAACACCATTTTTCCTCTTAAAAACACATGGTTGGCTCATTTCATCTACAAGAATTTCCATTA
CCATGATTATAATCATGCTTTTGTGTATTTCTTGTAAAACCACACCACACTTTCAACTTAAAATC
ATTGTTTTTTTCCCCTACTATCGGCTGCCTTTTTTGCTCTCATTTTCATA
Found at i:101194425 original size:25 final size:25
Alignment explanation
Indices: 101194397--101194446 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
101194387 AAGAAATCAA
101194397 ACAAAGCAAACATAAACAACACAAT
1 ACAAAGCAAACATAAACAACACAAT
101194422 ACAAAGCAAACATAAACAACACAAT
1 ACAAAGCAAACATAAACAACACAAT
101194447 GCTTAGTAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.64, C:0.24, G:0.04, T:0.08
Consensus pattern (25 bp):
ACAAAGCAAACATAAACAACACAAT
Found at i:101197652 original size:6 final size:6
Alignment explanation
Indices: 101197641--101197744 Score: 79
Period size: 6 Copynumber: 16.8 Consensus size: 6
101197631 TATCAAAATG
* *
101197641 AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATC AGAATC AAAATC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC
* * * *
101197690 AGAATT AG-GTGAC AGAATC AGAATC AGTATC AGGTAA-C AGAATG AGAATC
1 AGAATC AGAAT--C AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
101197740 AGAAT
1 AGAAT
101197745 GTGAATGCAA
Statistics
Matches: 77, Mismatches: 12, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
5 4 0.05
6 62 0.81
7 8 0.10
8 3 0.04
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:101197679 original size:31 final size:31
Alignment explanation
Indices: 101197641--101197744 Score: 106
Period size: 31 Copynumber: 3.4 Consensus size: 31
101197631 TATCAAAATG
*
101197641 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
* * *
101197672 AGAATCAGAATCAAAATCA-G-AATTAG-GTGAC
1 AGAATCAGAATCAGAATCAGGTAA-CAGAAT--C
* *
101197703 AGAATCAGAATCAGTATCAGGTAACAGAATG
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
101197734 AGAATCAGAAT
1 AGAATCAGAAT
101197745 GTGAATGCAA
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
29 2 0.03
30 3 0.05
31 47 0.81
32 3 0.05
33 3 0.05
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:101197691 original size:37 final size:37
Alignment explanation
Indices: 101197632--101197721 Score: 135
Period size: 37 Copynumber: 2.4 Consensus size: 37
101197622 TAGAACTAGT
* * *
101197632 ATCAAAATGAGAATCAGAATCAGAATCAGGTGACAGA
1 ATCAGAATCAGAATCAAAATCAGAATCAGGTGACAGA
*
101197669 ATCAGAATCAGAATCAAAATCAGAATTAGGTGACAGA
1 ATCAGAATCAGAATCAAAATCAGAATCAGGTGACAGA
*
101197706 ATCAGAATCAGTATCA
1 ATCAGAATCAGAATCA
101197722 GGTAACAGAA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (37 bp):
ATCAGAATCAGAATCAAAATCAGAATCAGGTGACAGA
Found at i:101197705 original size:25 final size:25
Alignment explanation
Indices: 101197677--101197744 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
101197667 GAATCAGAAT
* * *
101197677 CAGAATCAAAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
101197702 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
101197727 CAGAATGAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
101197745 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:101197899 original size:27 final size:26
Alignment explanation
Indices: 101197862--101197969 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
101197852 AGCATGGCTG
* *
101197862 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
101197888 CCAGAAACAGATATTGTGGCAGAGCCA
1 CCAG-AACAGATATTGTGGCAGAGCCA
* * *
101197915 CTAGAACATATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
* *
101197942 CCAGAAACAGATAATGTGGCAAAGCCA
1 CCAG-AACAGATATTGTGGCAGAGCCA
101197969 C
1 C
101197970 TTAACAGAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 11 0.16
27 52 0.74
28 7 0.10
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:101197950 original size:54 final size:53
Alignment explanation
Indices: 101197864--101197970 Score: 151
Period size: 54 Copynumber: 2.0 Consensus size: 53
101197854 CATGGCTGCC
* * *
101197864 AGAACAGATATTGTGACAGAGTCACCAGAAACAGATATTGTGGCAGAGCCACT
1 AGAACAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCACT
* * *
101197917 AGAACATATATTTGTGGCATAGCCACCAGAAACAGATAATGTGGCAAAGCCACT
1 AGAACAGATA-TTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCACT
101197971 TAACAGAATG
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 9 0.19
54 38 0.81
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (53 bp):
AGAACAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCACT
Found at i:101197995 original size:54 final size:54
Alignment explanation
Indices: 101197864--101197987 Score: 128
Period size: 54 Copynumber: 2.4 Consensus size: 54
101197854 CATGGCTGCC
* * * * * *
101197864 AGAACAGATAT-TGTGACAGAGTCACCAGAAACAGATATTGTGGCAGAGCCACT
1 AGAACAGATATGCGTGGCAAAGCCACCAGAAACAGATAATGTGGCAAAGCCACT
* ** *
101197917 AGAACATATATTTGTGGCATAGCCACCAGAAACAGATAATGTGGCAAAGCCACT
1 AGAACAGATATGCGTGGCAAAGCCACCAGAAACAGATAATGTGGCAAAGCCACT
*
101197971 -TAACAGA-ATGCGTGGCA
1 AGAACAGATATGCGTGGCA
101197988 CAAAGCCATC
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
52 8 0.13
53 15 0.25
54 37 0.62
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.19
Consensus pattern (54 bp):
AGAACAGATATGCGTGGCAAAGCCACCAGAAACAGATAATGTGGCAAAGCCACT
Found at i:101198156 original size:22 final size:22
Alignment explanation
Indices: 101198128--101198191 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
101198118 GCAAATACAT
*
101198128 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
101198150 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
101198172 TTGGCGCAAAGCCATAATCA
1 TTGGCACAAAGCCATAATCA
101198192 AAATAATTGG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:101198611 original size:27 final size:27
Alignment explanation
Indices: 101198581--101198642 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
101198571 GGGTAAAATG
101198581 GTAATTTTACCCTACAAGGG-TATTTCA
1 GTAATTTTACCCTAC-AGGGATATTTCA
*
101198608 GTAATTCTACCCTACAGGGATATTTCA
1 GTAATTTTACCCTACAGGGATATTTCA
*
101198635 ATAATTTT
1 GTAATTTT
101198643 GTAAATTGAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 4 0.13
27 27 0.87
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.39
Consensus pattern (27 bp):
GTAATTTTACCCTACAGGGATATTTCA
Found at i:101198709 original size:27 final size:26
Alignment explanation
Indices: 101198678--101198808 Score: 95
Period size: 27 Copynumber: 4.8 Consensus size: 26
101198668 CTATAAATCG
*
101198678 GGGTACTTCGCTAATTTTACAAGTCGA
1 GGGTATTTCG-TAATTTTACAAGTCGA
* *
101198705 GGGTATTTTAGTAATTTTACAGGTCGA
1 GGGTA-TTTCGTAATTTTACAAGTCGA
* *
101198732 GGGTATTTCAGTAATTTCACAAAATC-A
1 GGGTATTTC-GTAATTTTAC-AAGTCGA
* * *
101198759 TGGGTATTTTGGTAATTTTACAA-ACTA
1 -GGGTA-TTTCGTAATTTTACAAGTCGA
*
101198786 GGGGTATTTTGGTAATTTTACAA
1 -GGGTA-TTTCGTAATTTTACAA
101198809 ACCAGGGGTA
Statistics
Matches: 87, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
26 4 0.05
27 60 0.69
28 20 0.23
29 3 0.03
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (26 bp):
GGGTATTTCGTAATTTTACAAGTCGA
Found at i:101198809 original size:27 final size:27
Alignment explanation
Indices: 101198705--101198856 Score: 153
Period size: 27 Copynumber: 5.6 Consensus size: 27
101198695 TACAAGTCGA
** *
101198705 GGGTATTTTAGTAATTTTAC-AGGTCG
1 GGGTATTTTAGTAATTTTACAAACTAG
* * * *
101198731 AGGGTATTTCAGTAATTTCACAAAATCAT
1 -GGGTATTTTAGTAATTTTACAAACT-AG
*
101198760 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTAGTAATTTTACAAACTAG
* *
101198787 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTAGTAATTTTACAAACTAG
* * * *
101198814 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACTAG
101198841 GGGTATTTTAGTAATT
1 GGGTATTTTAGTAATT
101198857 CTACCCTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
27 85 0.79
28 23 0.21
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAACTAG
Found at i:101198845 original size:54 final size:55
Alignment explanation
Indices: 101198705--101198856 Score: 180
Period size: 54 Copynumber: 2.8 Consensus size: 55
101198695 TACAAGTCGA
* *** * * * *
101198705 GGGTATTTTAGTAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAAATCAT
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTCACAAAACCAG
* * * *
101198760 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTAC-AAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTCACAAAACCAG
*
101198814 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATT
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATT
101198857 CTACCCTACA
Statistics
Matches: 81, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
54 44 0.54
55 37 0.46
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (55 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTCACAAAACCAG
Found at i:101198882 original size:54 final size:54
Alignment explanation
Indices: 101198770--101198882 Score: 120
Period size: 54 Copynumber: 2.1 Consensus size: 54
101198760 GGGTATTTTG
* * * * * **
101198770 GTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTAGTAATTCTACAAACCAGGGGCATTTCA
* **
101198824 GTAATTTTATAAACCAAGGGTATTTTAGTAATTCTACCCTA-CAGGGGCATTTCA
1 GTAATTTTACAAACCAAGGGTATTTTAGTAATTCTA-CAAACCAGGGGCATTTCA
101198878 GTAAT
1 GTAAT
101198883 ACTAGCCTAC
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
54 46 0.96
55 2 0.04
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.37
Consensus pattern (54 bp):
GTAATTTTACAAACCAAGGGTATTTTAGTAATTCTACAAACCAGGGGCATTTCA
Found at i:101203624 original size:13 final size:13
Alignment explanation
Indices: 101203606--101203630 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101203596 TAATTTATAT
101203606 GTGTGAAAATTTC
1 GTGTGAAAATTTC
101203619 GTGTGAAAATTT
1 GTGTGAAAATTT
101203631 TATCATTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:101204888 original size:43 final size:44
Alignment explanation
Indices: 101204729--101204891 Score: 158
Period size: 43 Copynumber: 3.8 Consensus size: 44
101204719 CATAGGATTC
* * *
101204729 CGATATGTGA-TTTCGTGTAAGACCACGTCTGGGACGTTGGA-AT
1 CGATATGTGAGTTACATGTAAGACCACGTCTGGGACATT-GACAT
* * * * * *
101204772 CGATTTGTGATTTACATGTTAGACCATGTCTAGGACATTGGCAT
1 CGATATGTGAGTTACATGTAAGACCACGTCTGGGACATTGACAT
* * *
101204816 CG-TATATGAGTT-CGTGTAAGACC-CTGTCTGGGACAATGACAT
1 CGATATGTGAGTTACATGTAAGACCAC-GTCTGGGACATTGACAT
101204858 CGATATGTGA-TTACATGTAAGACCACGTCTGGGA
1 CGATATGTGAGTTACATGTAAGACCACGTCTGGGA
101204892 TGTTGCCGTT
Statistics
Matches: 95, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
42 27 0.28
43 41 0.43
44 27 0.28
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (44 bp):
CGATATGTGAGTTACATGTAAGACCACGTCTGGGACATTGACAT
Found at i:101206736 original size:2 final size:2
Alignment explanation
Indices: 101206688--101206721 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
101206678 ATGATTTGTG
*
101206688 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
101206722 CCTATGTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:101209046 original size:93 final size:93
Alignment explanation
Indices: 101208934--101209104 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
101208924 GCCCATAAGT
* *
101208934 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
101208999 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
101209027 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
101209092 CGAGTTCGGATGC
66 CGAGTTCGGATGC
101209105 TGAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:101209101 original size:46 final size:46
Alignment explanation
Indices: 101208926--101209101 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
101208916 TGTAACCCGC
* * *
101208926 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
101208972 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
101209022 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
101209065 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
101209102 TGCTGAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:101211513 original size:29 final size:29
Alignment explanation
Indices: 101211474--101211561 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
101211464 CAAAGATAAC
*
101211474 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
101211503 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
101211532 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
101211562 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:101211532 original size:15 final size:15
Alignment explanation
Indices: 101211474--101211552 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
101211464 CAAAGATAAC
*
101211474 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
101211488 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
101211503 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
101211517 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
101211532 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
101211547 AAGAAA
1 AAGAAA
101211553 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:101211561 original size:15 final size:15
Alignment explanation
Indices: 101211485--101211561 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
101211475 AGAAAACCGA
101211485 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
101211500 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
101211514 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
101211528 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
101211544 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
101211559 ATA
1 ATA
101211562 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:101214623 original size:93 final size:93
Alignment explanation
Indices: 101214511--101214681 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
101214501 GCCCATAAGT
* *
101214511 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
101214576 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
101214604 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
101214669 CGAGTTCGGATGC
66 CGAGTTCGGATGC
101214682 TGAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:101214678 original size:46 final size:46
Alignment explanation
Indices: 101214503--101214678 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
101214493 TGTAACCCGC
* * *
101214503 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
101214549 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
101214599 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
101214642 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
101214679 TGCTGAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:101218229 original size:22 final size:22
Alignment explanation
Indices: 101218194--101218243 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
101218184 AAACATATAT
* *
101218194 CACATGTCTTATGAGCTCAGAC
1 CACATATCTCATGAGCTCAGAC
* *
101218216 CACATATCTCATGAGGTCAGAT
1 CACATATCTCATGAGCTCAGAC
101218238 CACATA
1 CACATA
101218244 GTTCCTAGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (22 bp):
CACATATCTCATGAGCTCAGAC
Found at i:101227976 original size:53 final size:53
Alignment explanation
Indices: 101227797--101227998 Score: 197
Period size: 53 Copynumber: 3.8 Consensus size: 53
101227787 GGGTTTAAGA
* * * * *
101227797 ATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGG
1 ATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAAGG
* * * * * * * * *
101227851 AAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGGTAAGGCAAAG
1 ATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAGG
* * *
101227906 ATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGG
1 ATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAGG
* * *
101227959 ATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGT
1 ATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGT
101227999 CTAAAAAGGA
Statistics
Matches: 116, Mismatches: 30, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
53 43 0.37
54 34 0.29
55 39 0.34
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (53 bp):
ATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAGG
Found at i:101236434 original size:18 final size:19
Alignment explanation
Indices: 101236403--101236439 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
101236393 TTGAGAAGGA
101236403 AATGTAACTAAGTAAGTTC
1 AATGTAACTAAGTAAGTTC
*
101236422 AATG-AACTTAGTAAGTTC
1 AATGTAACTAAGTAAGTTC
101236440 CAGATGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32
Consensus pattern (19 bp):
AATGTAACTAAGTAAGTTC
Found at i:101238757 original size:17 final size:19
Alignment explanation
Indices: 101238715--101238758 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
101238705 ATGAAATTTT
* *
101238715 AATTAGTATTATGAGATAA
1 AATTATTATTATCAGATAA
101238734 AATTATTATTATCAGA-AA
1 AATTATTATTATCAGATAA
101238752 AA-TATTA
1 AATTATTA
101238759 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (19 bp):
AATTATTATTATCAGATAA
Found at i:101240621 original size:28 final size:28
Alignment explanation
Indices: 101240589--101240657 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
101240579 GCGTAGATCA
101240589 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
101240617 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
101240645 CGATA-TACCCCTA
1 CGAAATTACCCCTA
101240658 GGGTTTAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:101243082 original size:17 final size:19
Alignment explanation
Indices: 101243040--101243083 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
101243030 ATGAAATTTT
* *
101243040 AATTAGTATTATGAGATAA
1 AATTATTATTATCAGATAA
101243059 AATTATTATTATCAGA-AA
1 AATTATTATTATCAGATAA
101243077 AA-TATTA
1 AATTATTA
101243084 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (19 bp):
AATTATTATTATCAGATAA
Found at i:101243680 original size:78 final size:78
Alignment explanation
Indices: 101243591--101243745 Score: 310
Period size: 78 Copynumber: 2.0 Consensus size: 78
101243581 ACACAAGTAA
101243591 ATTTCGACAAGGGCCTTAGAGAGATGGGCCGATTGCTCTAATTTAATATTAGGGTTAGGTTCTTT
1 ATTTCGACAAGGGCCTTAGAGAGATGGGCCGATTGCTCTAATTTAATATTAGGGTTAGGTTCTTT
101243656 TCTTTTCTATCTC
66 TCTTTTCTATCTC
101243669 ATTTCGACAAGGGCCTTAGAGAGATGGGCCGATTGCTCTAATTTAATATTAGGGTTAGGTTCTTT
1 ATTTCGACAAGGGCCTTAGAGAGATGGGCCGATTGCTCTAATTTAATATTAGGGTTAGGTTCTTT
101243734 TCTTTTCTATCT
66 TCTTTTCTATCT
101243746 TGGAGAATTA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (78 bp):
ATTTCGACAAGGGCCTTAGAGAGATGGGCCGATTGCTCTAATTTAATATTAGGGTTAGGTTCTTT
TCTTTTCTATCTC
Found at i:101245033 original size:27 final size:28
Alignment explanation
Indices: 101244956--101245024 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
101244946 GCGTAGATCA
*
101244956 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
101244984 CGAAATTACCCCTAAAGAGTAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
*
101245012 CGATA-TACCCCTA
1 CGAAATTACCCCTA
101245025 GGGTTTAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGTAAAATTAC
Found at i:101254391 original size:28 final size:29
Alignment explanation
Indices: 101254360--101254490 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
101254350 GTGACGAGAT
101254360 TGGCACTAAGTGTGCGTGCTGGAAA-ATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
101254388 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ****
101254417 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
101254446 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
101254475 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
101254491 AAATCGAGTA
Statistics
Matches: 87, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
28 26 0.30
29 61 0.70
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:101254427 original size:29 final size:28
Alignment explanation
Indices: 101254360--101254431 Score: 126
Period size: 28 Copynumber: 2.5 Consensus size: 28
101254350 GTGACGAGAT
*
101254360 TGGCACTAAGTGTGCGTGCTGGAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAATA
101254388 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAA-ATA
101254417 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
101254432 GAGCTCGAAG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 24 0.57
29 18 0.43
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (28 bp):
TGGCACTAAGTGTGCATGCTGGAAAATA
Found at i:101262128 original size:29 final size:29
Alignment explanation
Indices: 101262095--101262168 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
101262085 GTGACGAGAT
101262095 TGGCACTAAGTGTGCGTGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
101262124 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
101262153 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
101262169 AGCTCGAAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:101262184 original size:29 final size:29
Alignment explanation
Indices: 101262152--101262227 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
101262142 CTGGAAATAT
* *
101262152 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * * *
101262181 ATGGCACTATGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
101262210 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
101262228 AATCGAGTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.20, G:0.34, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:101262185 original size:58 final size:58
Alignment explanation
Indices: 101262095--101262227 Score: 142
Period size: 58 Copynumber: 2.3 Consensus size: 58
101262085 GTGACGAGAT
* * * * *
101262095 TGGCACTAAGTGTGCGTGCTGGAAAAATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAAACATGGCACTAAGTGTGCAGGCT-GAAATCACA
*** * * * *
101262153 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTATGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAAACATGGCACTAAGTGTGCAGGCTGAAATCACA
101262211 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
101262228 AATCGAGTAT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
57 4 0.06
58 58 0.94
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.24
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAAACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:101267344 original size:29 final size:29
Alignment explanation
Indices: 101267307--101267364 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
101267297 GGATTACCAG
101267307 TCCAAGCTAAACCCTAATTGTAACGCATA
1 TCCAAGCTAAACCCTAATTGTAACGCATA
*
101267336 TCCAGGCTAAACCCTAATTGTAACGCATA
1 TCCAAGCTAAACCCTAATTGTAACGCATA
101267365 CTCGAGAGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.36, C:0.28, G:0.12, T:0.24
Consensus pattern (29 bp):
TCCAAGCTAAACCCTAATTGTAACGCATA
Found at i:101273436 original size:49 final size:49
Alignment explanation
Indices: 101273309--101273656 Score: 481
Period size: 49 Copynumber: 7.3 Consensus size: 49
101273299 CCCTTCGGGA
* * * * *
101273309 CTTATCACAT-T-TATACACTTCCACA-TCTATCACTTTGGCCACTCGGTC
1 CTTATCACATATATATACACTTTCACATTC-ATCACATCGGCCATTAGG-C
*
101273357 C-TATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
101273403 CTTATCACATATATATACACCTTCTCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
101273452 CTTATCACATATTTATACACTTTCACATTCATCACAT----C----GGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
101273493 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
101273542 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
101273591 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
101273640 CTTATCACATATATATA
1 CTTATCACATATATATA
101273657 TCTCATACAT
Statistics
Matches: 273, Mismatches: 13, Indels: 27
0.87 0.04 0.09
Matches are distributed among these distances:
41 39 0.14
45 2 0.01
46 3 0.01
47 40 0.15
48 3 0.01
49 186 0.68
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:101273522 original size:90 final size:92
Alignment explanation
Indices: 101273399--101273656 Score: 403
Period size: 90 Copynumber: 2.8 Consensus size: 92
101273389 ATTGGCCATT
* *
101273399 AGGCCTTATCACATATATATACACCTTCTCATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 AGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
101273464 TTATACACTTTCACATTCATCACAT-C
66 ATATACACTTTCACATTCATCACATCC
101273490 -GGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 AGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
101273554 ATACACACTTTCACATTCATCACATCGGCC
66 ATATACACTTTCACATTCATCACAT---CC
*
101273584 ATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 ---AGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
101273649 TATATATA
63 TATATATA
101273657 TCTCATACAT
Statistics
Matches: 153, Mismatches: 6, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
90 85 0.56
94 1 0.01
98 67 0.44
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.33
Consensus pattern (92 bp):
AGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
ATATACACTTTCACATTCATCACATCC
Found at i:101273573 original size:139 final size:139
Alignment explanation
Indices: 101273364--101273632 Score: 484
Period size: 139 Copynumber: 1.9 Consensus size: 139
101273354 GTCCTATCAC
* * *
101273364 ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCTC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACCTTCAC
* *
101273429 ATTCATCACATCGGCCATTAGGCCTTATCACATATTTATACACTTTCACATTCATCACATCGGCC
66 ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCC
101273494 TTATCACAT
131 TTATCACAT
*
101273503 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACCTTCAC
101273568 ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCC
66 ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCC
101273633 ATTAGGCCTT
Statistics
Matches: 124, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
139 124 1.00
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (139 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACCTTCAC
ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCC
TTATCACAT
Found at i:101279703 original size:2 final size:2
Alignment explanation
Indices: 101279692--101279724 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
101279682 ATATAAATTC
*
101279692 AT AT -T AT AT AT AC AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
101279725 TCATTATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:101281836 original size:14 final size:13
Alignment explanation
Indices: 101281814--101281842 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
101281804 AATTAATCCA
101281814 AAATTTTTTTACT
1 AAATTTTTTTACT
101281827 AAATTTTTTTACT
1 AAATTTTTTTACT
101281840 AAA
1 AAA
101281843 AAGTATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (13 bp):
AAATTTTTTTACT
Found at i:101282555 original size:3 final size:3
Alignment explanation
Indices: 101282549--101282588 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
101282539 AAGGGCAAAT
101282549 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
101282589 ATAAGAGACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:101289245 original size:17 final size:15
Alignment explanation
Indices: 101289207--101289247 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 15
101289197 AATCAATGTC
101289207 ATTAAAAATATTTTA
1 ATTAAAAATATTTTA
101289222 ATTAAAATATATTTTA
1 ATTAAAA-ATATTTTA
101289238 AGTTAAAAAT
1 A-TTAAAAAT
101289248 TAATTTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.29
16 11 0.46
17 6 0.25
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (15 bp):
ATTAAAAATATTTTA
Found at i:101290522 original size:61 final size:60
Alignment explanation
Indices: 101290440--101290609 Score: 175
Period size: 61 Copynumber: 2.8 Consensus size: 60
101290430 AAAATTTGTC
* * *
101290440 ATTTTGTAAACGTTAGAGATTAAATTTATTGAAATTTTTAGAATTTAAATTAAAATGAAAA
1 ATTTTATAAACATTAG-GATTAAATTTATTGAAATTTTTAGAATTTAAACTAAAATGAAAA
* * *
101290501 ATTTTATAAACATTGAGGATTAAATTTATTGATCATTTTT-GAATTAAAACTAAAATGACAA
1 ATTTTATAAACATT-AGGATTAAATTTATTGA-AATTTTTAGAATTTAAACTAAAATGAAAA
* * * * *
101290562 TTTTTTTAAACATTATAGTTTAAATTTGTTG-AATTGTTTAG-ATTTAAA
1 ATTTTATAAACATTA-GGATTAAATTTATTGAAATT-TTTAGAATTTAAA
101290610 ATCAAATTGA
Statistics
Matches: 91, Mismatches: 13, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
59 3 0.03
60 10 0.11
61 70 0.77
62 8 0.09
ACGTcount: A:0.42, C:0.04, G:0.11, T:0.44
Consensus pattern (60 bp):
ATTTTATAAACATTAGGATTAAATTTATTGAAATTTTTAGAATTTAAACTAAAATGAAAA
Found at i:101291110 original size:25 final size:26
Alignment explanation
Indices: 101291060--101291110 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
101291050 TTTATTAAAA
*
101291060 AAAATATAACATATAATAATATATTG
1 AAAATATAACATAAAATAATATATTG
101291086 AAAATA-AA-ATAAAATAGATATATTG
1 AAAATATAACATAAAATA-ATATATTG
101291111 TGAACAATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 7 0.30
25 10 0.43
26 6 0.26
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (26 bp):
AAAATATAACATAAAATAATATATTG
Found at i:101300233 original size:49 final size:49
Alignment explanation
Indices: 101300139--101300450 Score: 527
Period size: 49 Copynumber: 6.4 Consensus size: 49
101300129 TACATATATG
* * * *
101300139 TGTGATAAGGCCGAATGG-CAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
101300187 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
101300236 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
101300285 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
101300334 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
101300383 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
101300432 TGTGATAAGGCCTAATGGC
1 TGTGATGAGGCCTAATGGC
101300451 TAATGTAAAA
Statistics
Matches: 251, Mismatches: 12, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
48 16 0.06
49 235 0.94
ACGTcount: A:0.28, C:0.09, G:0.34, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:101300238 original size:27 final size:27
Alignment explanation
Indices: 101300208--101300341 Score: 72
Period size: 27 Copynumber: 5.3 Consensus size: 27
101300198 CTAATGGCCG
101300208 ATGTGATGAATGTGAAAGTGGATGTAT
1 ATGTGATGAATGTGAAAGTGGATGTAT
* *** **
101300235 ATGTGATG-AGGCCTAA-TGGCCG---
1 ATGTGATGAATGTGAAAGTGGATGTAT
* *
101300257 ATGTGGTGAATGTGAAAGTGTATGTAT
1 ATGTGATGAATGTGAAAGTGGATGTAT
* *** **
101300284 ATGTGATG-AGGCCTAA-TGGCCG-A-
1 ATGTGATGAATGTGAAAGTGGATGTAT
101300307 -TGTGATGAATGTGAAAGTGGATGTAT
1 ATGTGATGAATGTGAAAGTGGATGTAT
101300333 ATGTGATGA
1 ATGTGATGA
101300342 GGCCTAATGG
Statistics
Matches: 69, Mismatches: 28, Indels: 20
0.59 0.24 0.17
Matches are distributed among these distances:
22 14 0.20
23 8 0.12
24 8 0.12
25 8 0.12
26 8 0.12
27 23 0.33
ACGTcount: A:0.29, C:0.06, G:0.34, T:0.31
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGGATGTAT
Found at i:101300602 original size:37 final size:37
Alignment explanation
Indices: 101300552--101300636 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
101300542 GGAATATGTT
*
101300552 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
101300589 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
101300626 CCGGGTAAGAC
1 CCGGGTAAGAC
101300637 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:101304113 original size:36 final size:31
Alignment explanation
Indices: 101304042--101304102 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
101304032 CATCCCTTAA
101304042 GTGGATCTTCAATCTCCTCTCCAAACTAAAG
1 GTGGATCTTCAATCTCCTCTCCAAACTAAAG
101304073 GTGGATCTTCAATCTCCTCTCCAAACTAAA
1 GTGGATCTTCAATCTCCTCTCCAAACTAAA
101304103 ACAGGTGTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.30
Consensus pattern (31 bp):
GTGGATCTTCAATCTCCTCTCCAAACTAAAG
Found at i:101304610 original size:31 final size:33
Alignment explanation
Indices: 101304537--101304613 Score: 95
Period size: 36 Copynumber: 2.3 Consensus size: 33
101304527 TTATTTGAAT
*
101304537 TTATATGCGAGCCATGATATGTGAACCATGTGTTTA
1 TTATATGCGAGCCATGATATGCGAACCA-GTG--TA
*
101304573 TTATATGCGAGCCATGTTATGCGAACCA-TG-A
1 TTATATGCGAGCCATGATATGCGAACCAGTGTA
101304604 TTATATGCGA
1 TTATATGCGA
101304614 ACCCTAGGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
31 11 0.28
34 2 0.05
36 26 0.67
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.34
Consensus pattern (33 bp):
TTATATGCGAGCCATGATATGCGAACCAGTGTA
Found at i:101304612 original size:17 final size:17
Alignment explanation
Indices: 101304572--101304616 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 17
101304562 CCATGTGTTT
*
101304572 ATTATATGCGAGCCATG
1 ATTATATGCGAACCATG
101304589 --T-TATGCGAACCATG
1 ATTATATGCGAACCATG
101304603 ATTATATGCGAACC
1 ATTATATGCGAACC
101304617 CTAGGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
14 12 0.50
15 1 0.04
16 1 0.04
17 10 0.42
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (17 bp):
ATTATATGCGAACCATG
Found at i:101306326 original size:2 final size:2
Alignment explanation
Indices: 101306315--101306345 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
101306305 TTTAAGTTAT
101306315 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
101306346 AATAAAGTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:101306373 original size:16 final size:17
Alignment explanation
Indices: 101306349--101306388 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
101306339 ATATATAAAT
* *
101306349 AAAGTAAAAGAA-ATAA
1 AAAGAAAAAGAATAGAA
101306365 AAAGAAAAAGAATAGAA
1 AAAGAAAAAGAATAGAA
101306382 AAAGAAA
1 AAAGAAA
101306389 GAAAGGATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (17 bp):
AAAGAAAAAGAATAGAA
Found at i:101306383 original size:11 final size:10
Alignment explanation
Indices: 101306355--101306392 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
101306345 AAATAAAGTA
101306355 AAAGAAATAA-
1 AAAGAAA-AAG
101306365 AAAGAAAAAG
1 AAAGAAAAAG
101306375 AATAGAAAAAG
1 AA-AGAAAAAG
101306386 AAAGAAA
1 AAAGAAA
101306393 GGATGAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 2 0.08
10 14 0.54
11 10 0.38
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:101308599 original size:46 final size:46
Alignment explanation
Indices: 101308532--101308715 Score: 296
Period size: 46 Copynumber: 4.0 Consensus size: 46
101308522 AGTGTGCTCT
*
101308532 CTGATATGAAATGTTTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
101308578 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
101308624 CTGATATGAAATATGTAAGACCATGGTTGAAAGATACTATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * **
101308670 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
101308716 ATGACAGAAA
Statistics
Matches: 128, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 128 1.00
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:101308689 original size:92 final size:92
Alignment explanation
Indices: 101308532--101308759 Score: 296
Period size: 92 Copynumber: 2.4 Consensus size: 92
101308522 AGTGTGCTCT
* * * * * **
101308532 CTGATATGAAATGTTTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATATGTAAGACCATGGTTGAAAGATACTATGGCAACCTGACATGAAAAGAATAAG
101308597 ACCATGGTTGAAAGATACCATGGCAAC
66 ACCATGGTTGAAAGATACCATGGCAAC
*
101308624 CTGATATGAAATATGTAAGACCATGGTTGAAAGATACTATGGCAACGTGACATGAAAAGAATAAG
1 CTGATATGAAATATGTAAGACCATGGTTGAAAGATACTATGGCAACCTGACATGAAAAGAATAAG
101308689 ACCATGGTTGAAAGATACCATGGCAAC
66 ACCATGGTTGAAAGATACCATGGCAAC
* * * *
101308716 ATGACA-GAAAATGAATGAGTAAGACCATAGTTGAAAGACACTAT
1 CTGATATG-AAAT--AT--GTAAGACCATGGTTGAAAGATACTAT
101308760 AGCATCATGT
Statistics
Matches: 119, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
91 1 0.01
92 92 0.77
94 2 0.02
96 24 0.20
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.23
Consensus pattern (92 bp):
CTGATATGAAATATGTAAGACCATGGTTGAAAGATACTATGGCAACCTGACATGAAAAGAATAAG
ACCATGGTTGAAAGATACCATGGCAAC
Found at i:101312079 original size:40 final size:39
Alignment explanation
Indices: 101311996--101312178 Score: 163
Period size: 40 Copynumber: 4.6 Consensus size: 39
101311986 TTGAATGATG
* * * * *
101311996 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
101312036 TCCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
101312076 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
101312115 CCCGGGTTAAGTCTCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGTC-CGAAGGCATTCGTGCGAGTTAATA-AA
**
101312156 -CCGGGCTTTGTCCCGAAGGCATT
1 TCCGGGCTAAGT-CCGAAGGCATT
101312179 TGAGAGAGTC
Statistics
Matches: 120, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 34 0.28
40 76 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:101312141 original size:79 final size:82
Alignment explanation
Indices: 101311996--101312180 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
101311986 TTGAATGATG
* * *
101311996 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
101312060 CGTGCGAGTTAATA-AA
66 CGTGCGAGTTAATATAA
* * **
101312076 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAACCCGGGTTAAG-TCTCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATC-CGAAGGCAT
*
101312138 TCGTGCGAGTTACTATAA
65 TCGTGCGAGTTAATATAA
**
101312156 -CCGGGCTTTGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
101312181 AGAGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 55 0.60
80 34 0.37
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTAATATAA
Found at i:101312212 original size:79 final size:77
Alignment explanation
Indices: 101311996--101312213 Score: 190
Period size: 79 Copynumber: 2.7 Consensus size: 77
101311986 TTGAATGATG
* * *
101311996 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACTATATCCGGACTAAGATCCGAAGGCGT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAG--AGAGTCACTATATCCGGA-TAA-ATCCGAAGGCAT
101312059 TCGTGCGAGTTAATAAA
61 TCGTGCGAGTTAATAAA
* * * * * * *
101312076 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCTCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGAGAGTCACTATATCC-GGATAAATC-CGAAGGCATTCG
*
101312141 TGCGAGTTACTATAA
64 TGCGAGTTAATA-AA
** **
101312156 -CCGGGCTTTGTCCCGAAGGCATTTGAGAGAGTCGTTATATCCGGATAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGAGAGTCACTATATCCGGATAAA-TCCGAAGG
101312214 TACGTGATTC
Statistics
Matches: 112, Mismatches: 19, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
78 2 0.02
79 63 0.56
80 47 0.42
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (77 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGAGAGTCACTATATCCGGATAAATCCGAAGGCATTCGTG
CGAGTTAATAAA
Found at i:101315043 original size:29 final size:29
Alignment explanation
Indices: 101315009--101315135 Score: 92
Period size: 29 Copynumber: 4.2 Consensus size: 29
101314999 TTGTTACACT
101315009 AGCCTACATGCGAACCCTAGGTACATGCG
1 AGCCTACATGCGAACCCTAGGTACATGCG
** * * *
101315038 AGCCTATGTGCGAACCCTAGGAACTTGTG
1 AGCCTACATGCGAACCCTAGGTACATGCG
** * * *
101315067 AGCCTTTATACGATCCCTAGGTGCATGCG
1 AGCCTACATGCGAACCCTAGGTACATGCG
* * *
101315096 TGCCTATATGCCATGCGAACCCTTGGTACATGCT
1 AGCC--TA---CATGCGAACCCTAGGTACATGCG
101315130 AGCCTA
1 AGCCTA
101315136 TATGATCATG
Statistics
Matches: 71, Mismatches: 22, Indels: 7
0.71 0.22 0.07
Matches are distributed among these distances:
29 48 0.68
31 1 0.01
32 2 0.03
34 20 0.28
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCCTACATGCGAACCCTAGGTACATGCG
Found at i:101316805 original size:42 final size:43
Alignment explanation
Indices: 101316740--101316866 Score: 148
Period size: 42 Copynumber: 3.0 Consensus size: 43
101316730 ACAAGCGCCG
* * * *
101316740 CAAAAAACGCCGCTAAAGTCCATGACTTTTGGCTGCGCTTTT-
1 CAAAAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTC
*
101316782 TAAAAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTC
1 CAAAAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTC
*** * * *
101316825 CCGCAAACGCCGCTAAAAACCATGACCTTTAACGGCACTTTT
1 CAAAAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTT
101316867 GTTATAAACG
Statistics
Matches: 72, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 37 0.51
43 35 0.49
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (43 bp):
CAAAAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTC
Found at i:101321623 original size:41 final size:41
Alignment explanation
Indices: 101321544--101321623 Score: 97
Period size: 41 Copynumber: 2.0 Consensus size: 41
101321534 GCGTTTTCAA
* * *
101321544 TAAAAATGTCACTATAGTTCAATTTTTTGCAGCCTTTTTAC
1 TAAAAACGCCACTATAGTTCAATTTTTTGCAGCATTTTTAC
** **
101321585 TAAAAACGCCACTATAGTTTTATTTTTTGTGGCATTTTT
1 TAAAAACGCCACTATAGTTCAATTTTTTGCAGCATTTTT
101321624 GGAAAAAAAG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.28, C:0.15, G:0.11, T:0.46
Consensus pattern (41 bp):
TAAAAACGCCACTATAGTTCAATTTTTTGCAGCATTTTTAC
Found at i:101321811 original size:15 final size:15
Alignment explanation
Indices: 101321792--101321831 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
101321782 TTAAATATTA
101321792 AATTTTTAAGTTTTTT
1 AATTTTTAA-TTTTTT
* *
101321808 ATTTTTTTATTTTTT
1 AATTTTTAATTTTTT
101321823 AATTTTTAA
1 AATTTTTAA
101321832 ATTATAAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (15 bp):
AATTTTTAATTTTTT
Found at i:101321863 original size:9 final size:8
Alignment explanation
Indices: 101321789--101321870 Score: 51
Period size: 8 Copynumber: 9.9 Consensus size: 8
101321779 ATATTAAATA
101321789 TTAAATTT
1 TTAAATTT
*
101321797 TTAAGTTT
1 TTAAATTT
*
101321805 TT-TATTT
1 TTAAATTT
**
101321812 TTTTATTT
1 TTAAATTT
*
101321820 TTTAATTT
1 TTAAATTT
101321828 TTAAA-TT
1 TTAAATTT
*
101321835 ATAAATTTTT
1 TTAAA--TTT
101321845 TTGAAGATTT
1 TT-AA-ATTT
101321855 TTATAATTT
1 TTA-AATTT
101321864 TTAAATT
1 TTAAATT
101321871 ACCATATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
7 11 0.18
8 29 0.48
9 8 0.13
10 9 0.15
11 2 0.03
12 1 0.02
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (8 bp):
TTAAATTT
Found at i:101322594 original size:21 final size:21
Alignment explanation
Indices: 101322580--101322626 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
101322570 CCTAACACTT
101322580 AACCCCTAACCCCTAAGCCTTA
1 AACCCC-AACCCCTAAGCCTTA
* * *
101322602 AACCCCAACCCTTAAACCATA
1 AACCCCAACCCCTAAGCCTTA
101322623 AACC
1 AACC
101322627 ATAATCCCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.38, C:0.45, G:0.02, T:0.15
Consensus pattern (21 bp):
AACCCCAACCCCTAAGCCTTA
Found at i:101322616 original size:14 final size:15
Alignment explanation
Indices: 101322587--101322619 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
101322577 CTTAACCCCT
*
101322587 AACCCCTAAGCCTTA
1 AACCCCTAACCCTTA
101322602 AACCCC-AACCCTTA
1 AACCCCTAACCCTTA
101322616 AACC
1 AACC
101322620 ATAAACCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.36, C:0.45, G:0.03, T:0.15
Consensus pattern (15 bp):
AACCCCTAACCCTTA
Found at i:101322626 original size:15 final size:14
Alignment explanation
Indices: 101322614--101322709 Score: 52
Period size: 14 Copynumber: 6.7 Consensus size: 14
101322604 CCCCAACCCT
101322614 TAAACCATAAACCA
1 TAAACCATAAACCA
* *
101322628 TAATCCCTAAACCCA
1 TAAACCATAAA-CCA
* *
101322643 TAATCCATAAACCT
1 TAAACCATAAACCA
101322657 TAAA--ATAGTAACTCA
1 TAAACCATA--AAC-CA
* ** *
101322672 TACACTTTAAACCC
1 TAAACCATAAACCA
* *
101322686 TAAACCATATACCC
1 TAAACCATAAACCA
101322700 TAAACCATAA
1 TAAACCATAA
101322710 TGACAATTAA
Statistics
Matches: 62, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
12 3 0.05
14 37 0.60
15 20 0.32
17 2 0.03
ACGTcount: A:0.47, C:0.29, G:0.01, T:0.23
Consensus pattern (14 bp):
TAAACCATAAACCA
Found at i:101322660 original size:22 final size:21
Alignment explanation
Indices: 101322611--101322709 Score: 76
Period size: 22 Copynumber: 4.6 Consensus size: 21
101322601 AAACCCCAAC
*
101322611 CCTTAAACCATAAACCATAAT
1 CCTTAAACCATAAACCATAAA
* *
101322632 CCCTAAACCCATAATCCATAAA
1 CCTTAAA-CCATAAACCATAAA
*
101322654 CCTTAAA--ATAGTAACTCATACA
1 CCTTAAACCATA--AAC-CATAAA
* * *
101322676 CTTTAAACCCTAAACCATATA
1 CCTTAAACCATAAACCATAAA
*
101322697 CCCTAAACCATAA
1 CCTTAAACCATAA
101322710 TGACAATTAA
Statistics
Matches: 60, Mismatches: 12, Indels: 12
0.71 0.14 0.14
Matches are distributed among these distances:
19 3 0.05
21 23 0.38
22 32 0.53
24 2 0.03
ACGTcount: A:0.45, C:0.30, G:0.01, T:0.23
Consensus pattern (21 bp):
CCTTAAACCATAAACCATAAA
Found at i:101322701 original size:14 final size:14
Alignment explanation
Indices: 101322682--101322708 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
101322672 TACACTTTAA
101322682 ACCCTAAACCATAT
1 ACCCTAAACCATAT
101322696 ACCCTAAACCATA
1 ACCCTAAACCATA
101322709 ATGACAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.37, G:0.00, T:0.19
Consensus pattern (14 bp):
ACCCTAAACCATAT
Found at i:101322819 original size:7 final size:7
Alignment explanation
Indices: 101322807--101322961 Score: 100
Period size: 7 Copynumber: 21.7 Consensus size: 7
101322797 ACTAATTAAT
101322807 CTAAACC
1 CTAAACC
101322814 CTAAACTC
1 CTAAAC-C
*
101322822 CTAATCC
1 CTAAACC
101322829 CTAAACC
1 CTAAACC
101322836 CTAAACC
1 CTAAACC
* *
101322843 ATAAATC
1 CTAAACC
*
101322850 CTAAAAC
1 CTAAACC
*
101322857 ATAAACC
1 CTAAACC
* *
101322864 TTGAACC
1 CTAAACC
101322871 CTAAACC
1 CTAAACC
**
101322878 CCCAACC
1 CTAAACC
*
101322885 CTTAACC
1 CTAAACC
101322892 TCT-AACAC
1 -CTAAAC-C
101322900 CTAAACC
1 CTAAACC
*
101322907 TTAAACC
1 CTAAACC
*
101322914 C-CAACC
1 CTAAACC
101322920 CTTAAACC
1 C-TAAACC
* *
101322928 ATAATCC
1 CTAAACC
101322935 CTAAACC
1 CTAAACC
101322942 C-ATAACC
1 CTA-AACC
101322949 CATAAACC
1 C-TAAACC
*
101322957 TTAAA
1 CTAAA
101322962 ATAGTAACTC
Statistics
Matches: 114, Mismatches: 25, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
6 6 0.05
7 87 0.76
8 20 0.18
9 1 0.01
ACGTcount: A:0.42, C:0.38, G:0.01, T:0.19
Consensus pattern (7 bp):
CTAAACC
Found at i:101322944 original size:15 final size:15
Alignment explanation
Indices: 101322916--101322956 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
101322906 CTTAAACCCC
*
101322916 AACCCTTAAA-CCAT
1 AACCCATAAACCCAT
101322930 AATCCC-TAAACCCAT
1 AA-CCCATAAACCCAT
101322945 AACCCATAAACC
1 AACCCATAAACC
101322957 TTAAAATAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 9 0.38
15 15 0.62
ACGTcount: A:0.44, C:0.39, G:0.00, T:0.17
Consensus pattern (15 bp):
AACCCATAAACCCAT
Found at i:101322961 original size:22 final size:22
Alignment explanation
Indices: 101322916--101323007 Score: 62
Period size: 22 Copynumber: 4.2 Consensus size: 22
101322906 CTTAAACCCC
* * * *
101322916 AACCCTTAAACCATAATCCCTA
1 AACCCATAACCCATAAACCTTA
101322938 AACCCATAACCCATAAACCTTA
1 AACCCATAACCCATAAACCTTA
** * *
101322960 AA-ATAGTAACTCATAAACATTA
1 AACCCA-TAACCCATAAACCTTA
* * *
101322982 AACCCTTAA-CCATATACCGTA
1 AACCCATAACCCATAAACCTTA
101323003 AACCC
1 AACCC
101323008 TAAACTATAA
Statistics
Matches: 53, Mismatches: 15, Indels: 5
0.73 0.21 0.07
Matches are distributed among these distances:
21 14 0.26
22 39 0.74
ACGTcount: A:0.45, C:0.32, G:0.02, T:0.22
Consensus pattern (22 bp):
AACCCATAACCCATAAACCTTA
Found at i:101325293 original size:79 final size:80
Alignment explanation
Indices: 101325133--101325299 Score: 212
Period size: 79 Copynumber: 2.1 Consensus size: 80
101325123 CATTTGAATG
* * * **
101325133 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTGACCATATCCGGGCTAAGACCCGAAGGCA
*
101325198 TTCGTGCGAGTTGTT
66 TTCGTGCGAGTGGTT
* * *
101325213 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCA-ATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTGACCATATCCGGGCTAAGACCCGAAGGC-
**
101325277 ATT-GTGCTTGTGGTT
65 ATTCGTGCGAGTGGTT
101325292 ATATCCGG
1 ATATCCGG
101325300 TTAAATCCGA
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
79 38 0.51
80 37 0.49
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTGACCATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTGGTT
Found at i:101325303 original size:39 final size:40
Alignment explanation
Indices: 101325133--101325299 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
101325123 CATTTGAATG
* * *
101325133 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
101325173 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * **
101325213 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * *
101325253 A-ATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
101325292 ATATCCGG
1 ATATCCGG
101325300 TTAAATCCGA
Statistics
Matches: 107, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.33
40 67 0.63
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:101334736 original size:40 final size:40
Alignment explanation
Indices: 101334692--101334801 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
101334682 TTCACAATTT
* *
101334692 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
101334732 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
101334772 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
101334802 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:101338749 original size:40 final size:40
Alignment explanation
Indices: 101338705--101338814 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
101338695 TTCACAATTT
* *
101338705 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
101338745 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
101338785 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
101338815 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:101346804 original size:40 final size:40
Alignment explanation
Indices: 101346760--101346869 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
101346750 TTCACAATTT
* *
101346760 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
101346800 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
101346840 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
101346870 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:101356497 original size:35 final size:35
Alignment explanation
Indices: 101356458--101356524 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
101356448 TTGATATGCG
*
101356458 AATCAGAATAATAACATGCTTAACATGCGAATCAT
1 AATCAGAATAATAACATGCTCAACATGCGAATCAT
*
101356493 AATCAGAATAATAGCATGCTCAACATGCGAAT
1 AATCAGAATAATAACATGCTCAACATGCGAAT
101356525 TAAAATATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.24
Consensus pattern (35 bp):
AATCAGAATAATAACATGCTCAACATGCGAATCAT
Found at i:101356538 original size:35 final size:35
Alignment explanation
Indices: 101356458--101356538 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 35
101356448 TTGATATGCG
* * *
101356458 AATCAGAATAATAACATGCTTAACATGCGAATCAT
1 AATCACAATAATAACATGCTCAACATGCGAATCAA
* * *
101356493 AATCAGAATAATAGCATGCTCAACATGCGAATTAA
1 AATCACAATAATAACATGCTCAACATGCGAATCAA
101356528 AAT-ATCAATAA
1 AATCA-CAATAA
101356539 ATCAATGTCA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
34 1 0.03
35 39 0.98
ACGTcount: A:0.48, C:0.16, G:0.11, T:0.25
Consensus pattern (35 bp):
AATCACAATAATAACATGCTCAACATGCGAATCAA
Found at i:101358548 original size:46 final size:46
Alignment explanation
Indices: 101358389--101358562 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
101358379 GTTTGGGCAT
* *
101358389 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*** * * * *
101358434 CCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-AC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC
*
101358479 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
101358527 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
101358563 GCACATGGTA
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
45 30 0.28
46 45 0.42
47 29 0.27
48 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:101361507 original size:15 final size:15
Alignment explanation
Indices: 101361487--101361555 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
101361477 GTATCTTGGG
101361487 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
101361502 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
101361517 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
101361532 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
101361547 TTTCTTTAT
1 TTTCTTTAT
101361556 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:101361556 original size:30 final size:30
Alignment explanation
Indices: 101361478--101361565 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
101361468 CATAGTATCG
* * * *
101361478 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
101361508 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
101361538 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
101361566 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Done.