Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 324 of 433
Found at i:101364075 original size:45 final size:44
Alignment explanation
Indices: 101363918--101364091 Score: 197
Period size: 45 Copynumber: 3.8 Consensus size: 44
101363908 GTTTGGGCAT
101363918 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * * *
101363963 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCAT
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
101364011 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
101364056 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
101364092 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 36 0.33
46 32 0.30
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (44 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:101367932 original size:26 final size:26
Alignment explanation
Indices: 101367903--101368006 Score: 172
Period size: 26 Copynumber: 4.0 Consensus size: 26
101367893 TGGTACAAAT
101367903 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
101367929 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
101367955 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
101367981 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101368007 AGATGGGAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:101370794 original size:27 final size:28
Alignment explanation
Indices: 101370737--101370805 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
101370727 AAACTTGTAC
*
101370737 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
101370765 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
101370792 AGCACT-AGTGTGCG
1 AGCACTAAGTGTGCG
101370806 GACTCACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
26 8 0.21
27 14 0.36
28 17 0.44
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:101379813 original size:781 final size:781
Alignment explanation
Indices: 101378311--101379855 Score: 2928
Period size: 781 Copynumber: 2.0 Consensus size: 781
101378301 TAAACTTATT
101378311 TTCATGTATAAATGGTAGCATTATGTATATAATTTATCGTAGTTATTCTAGAAATGAATGTGACA
1 TTCATGTATAAATGGTAGCATTATGTATATAATTTATCGTAGTTATTCTAGAAATGAATGTGACA
* ** *
101378376 TGTCGTAGCTCAGATCTAACGACCGGGTCAGGTATAGGGTGTTGCATTTACAATATTTATAGTTG
66 TGTCGTAGCTCAGATCCAACGACCGAATCAGGTATAGGGTGTTGCATGTACAATATTTATAGTTG
* *
101378441 AGCGACATAATGATTTTATAAAGTGTTGTTAGTTGTGTTGTCAAGTGATGGTTATAAATCCTTGT
131 AGCGACATAATGATTTTATAAAGTGTTATTAGTGGTGTTGTCAAGTGATGGTTATAAATCCTTGT
*
101378506 TGAAAAAGTTCAAATGATTGTATAAATGTGTATAATTGCTTAAACACGTGTTGGTAAATCACCTA
196 TGAAAAAGTTAAAATGATTGTATAAATGTGTATAATTGCTTAAACACGTGTTGGTAAATCACCTA
101378571 AGTGAAATGTGAACTACCAAAAATGAAAGAAGTGAAAAGAATGGATCCATGAGCCCTTAGTAATT
261 AGTGAAATGTGAACTACCAAAAATGAAAGAAGTGAAAAGAATGGATCCATGAGCCCTTAGTAATT
*
101378636 GAATTTAATAAATTATTATTGACCGCCTAGTTATTTATAATAAAAATGTAACACAAAAAATATAG
326 GAATTTAATAAATTATTATTGACCGCCTAATTATTTATAATAAAAATGTAACACAAAAAATATAG
*
101378701 GAATTGTGAACAGCGATGTCCGCAAGTGCATGGGTGAAATTATAATATAGTTTAGTACAATAAAA
391 GAATTGTGAACAGCGATGTCCGCAAGTGCATGGGTGAAATTACAATATAGTTTAGTACAATAAAA
*
101378766 TACTTTAGAAATATTCTGATAATTGTACCCAAGGTAGGATAGAATAAATTATGAAAACCTTTTTA
456 TACTTTAGAAATATTCTGATAATCGTACCCAAGGTAGGATAGAATAAATTATGAAAACCTTTTTA
*
101378831 TGATAATAAGTTTAAATAGTACTAATTAATTCCTATATTACGATAAACCATTAAATAAGTTAATG
521 TGATAATAAGTCTAAATAGTACTAATTAATTCCTATATTACGATAAACCATTAAATAAGTTAATG
101378896 AGATAAAAATAAATAAATAACGATCTTTGTTTGTAAATAAATAAATAAGTTAAGAAAAATAAACA
586 AGATAAAAATAAATAAATAACGATCTTTGTTTGTAAATAAATAAATAAGTTAAGAAAAATAAACA
101378961 AACAAACTAAATTAATAACACAAACAGGAATATTAACTTGCTTCAAGGTTTGTAACTAACTTCGA
651 AACAAACTAAATTAATAACACAAACAGGAATATTAACTTGCTTCAAGGTTTGTAACTAACTTCGA
101379026 ATTAGGGTTTTAGGGTGGATTAGCTACCGATTAACCAATTATTACCTTTGTTTGTAATTAACTTG
716 ATTAGGGTTTTAGGGTGGATTAGCTACCGATTAACCAATTATTACCTTTGTTTGTAATTAACTTG
101379091 C
781 C
101379092 TTCATGTATAAATGGTAGCATTATGTATATAATTTATCGTAGTTATTCTAGAAATGAATGTGACA
1 TTCATGTATAAATGGTAGCATTATGTATATAATTTATCGTAGTTATTCTAGAAATGAATGTGACA
* *
101379157 TGTCGTAGCTCAGATCCAATGACCGAATCAGGTATAGGTTGTTGCATGTACAATATTTATAGTTG
66 TGTCGTAGCTCAGATCCAACGACCGAATCAGGTATAGGGTGTTGCATGTACAATATTTATAGTTG
*
101379222 AGTGACATAATGATTTTATAAAGTGTTATTAGTGGTGTTGTCAAGTGATGGTTATAAATCCTTGT
131 AGCGACATAATGATTTTATAAAGTGTTATTAGTGGTGTTGTCAAGTGATGGTTATAAATCCTTGT
*
101379287 TGAAAAAGTTAAAATGATTGTATAAATGTGTATAATTGCTTGAACACGTGTTGGTAAATCACCTA
196 TGAAAAAGTTAAAATGATTGTATAAATGTGTATAATTGCTTAAACACGTGTTGGTAAATCACCTA
101379352 AGTGAAATGTGAACTACCAAAAATGAAAGAAGTGAAAAGAATGGATCCATGAGCCCTTAGTAATT
261 AGTGAAATGTGAACTACCAAAAATGAAAGAAGTGAAAAGAATGGATCCATGAGCCCTTAGTAATT
101379417 GAATTTAATAAATTATTATTGACCGCCTAATTATTTATAATAAAAATGTAACACAAAAAATATAG
326 GAATTTAATAAATTATTATTGACCGCCTAATTATTTATAATAAAAATGTAACACAAAAAATATAG
*
101379482 GAATTGTGAACAGCGATGTCCGCAAGTGCATGGGTGAAATTACAGTATAGTTTAGTACAATAAAA
391 GAATTGTGAACAGCGATGTCCGCAAGTGCATGGGTGAAATTACAATATAGTTTAGTACAATAAAA
101379547 TACTTTAGAAATATTCTGATAATCGTACCCAAGGTAGGATAGAATAAATTATGAAAACCTTTTTA
456 TACTTTAGAAATATTCTGATAATCGTACCCAAGGTAGGATAGAATAAATTATGAAAACCTTTTTA
101379612 TGATAATAAGTCTAAATAGTACTAATTAATTCCTATATTACGATAAACCATTAAATAAGTTAATG
521 TGATAATAAGTCTAAATAGTACTAATTAATTCCTATATTACGATAAACCATTAAATAAGTTAATG
*
101379677 AGATAAAAATAAATAAATAATGATCTTTGTTTGTAAATAAATAAATAAGTTAAGAAAAATAAACA
586 AGATAAAAATAAATAAATAACGATCTTTGTTTGTAAATAAATAAATAAGTTAAGAAAAATAAACA
*
101379742 AACGAACTAAATTAATAACACAAACAGGAATATTAACTTGCTTCAAGGTTTGTAACTAACTTCGA
651 AACAAACTAAATTAATAACACAAACAGGAATATTAACTTGCTTCAAGGTTTGTAACTAACTTCGA
101379807 ATTAGGGTTTTAGGGTGGATTAGCTACCGATTAACCAATTATTACCTTT
716 ATTAGGGTTTTAGGGTGGATTAGCTACCGATTAACCAATTATTACCTTT
101379856 CGGCCTCTAA
Statistics
Matches: 746, Mismatches: 18, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
781 746 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (781 bp):
TTCATGTATAAATGGTAGCATTATGTATATAATTTATCGTAGTTATTCTAGAAATGAATGTGACA
TGTCGTAGCTCAGATCCAACGACCGAATCAGGTATAGGGTGTTGCATGTACAATATTTATAGTTG
AGCGACATAATGATTTTATAAAGTGTTATTAGTGGTGTTGTCAAGTGATGGTTATAAATCCTTGT
TGAAAAAGTTAAAATGATTGTATAAATGTGTATAATTGCTTAAACACGTGTTGGTAAATCACCTA
AGTGAAATGTGAACTACCAAAAATGAAAGAAGTGAAAAGAATGGATCCATGAGCCCTTAGTAATT
GAATTTAATAAATTATTATTGACCGCCTAATTATTTATAATAAAAATGTAACACAAAAAATATAG
GAATTGTGAACAGCGATGTCCGCAAGTGCATGGGTGAAATTACAATATAGTTTAGTACAATAAAA
TACTTTAGAAATATTCTGATAATCGTACCCAAGGTAGGATAGAATAAATTATGAAAACCTTTTTA
TGATAATAAGTCTAAATAGTACTAATTAATTCCTATATTACGATAAACCATTAAATAAGTTAATG
AGATAAAAATAAATAAATAACGATCTTTGTTTGTAAATAAATAAATAAGTTAAGAAAAATAAACA
AACAAACTAAATTAATAACACAAACAGGAATATTAACTTGCTTCAAGGTTTGTAACTAACTTCGA
ATTAGGGTTTTAGGGTGGATTAGCTACCGATTAACCAATTATTACCTTTGTTTGTAATTAACTTG
C
Found at i:101388851 original size:39 final size:39
Alignment explanation
Indices: 101388770--101388921 Score: 241
Period size: 39 Copynumber: 3.9 Consensus size: 39
101388760 TATTGTAACC
* * * * *
101388770 CGCACAAATGCCTTAGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
101388810 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
101388849 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
101388888 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
101388922 CTCGAACATT
Statistics
Matches: 105, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.85
40 16 0.15
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:101392353 original size:31 final size:30
Alignment explanation
Indices: 101392296--101392354 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
101392286 GTAAATACTT
* * * *
101392296 AAAATTTGAGGGATTAAAGTGTAAATATGA
1 AAAAGTTGAAGGACTAAAGTGCAAATATGA
101392326 AAAAGTTGAAGGACTAATAGTGCAAATAT
1 AAAAGTTGAAGGACTAA-AGTGCAAATAT
101392355 TTTAAGGGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 14 0.58
31 10 0.42
ACGTcount: A:0.47, C:0.03, G:0.22, T:0.27
Consensus pattern (30 bp):
AAAAGTTGAAGGACTAAAGTGCAAATATGA
Found at i:101392609 original size:31 final size:31
Alignment explanation
Indices: 101392567--101392632 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
101392557 TTTATAGTTA
*
101392567 TTTAATTAGATAATTATTATT-TATTTAATAT
1 TTTAATAAGATAATTATTATTAT-TTTAATAT
* * *
101392598 TTTAATAAGATATTTTTTATTATTTTATTAT
1 TTTAATAAGATAATTATTATTATTTTAATAT
101392629 TTTA
1 TTTA
101392633 CTTAGTATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTATTTTAATAT
Found at i:101393959 original size:51 final size:51
Alignment explanation
Indices: 101393881--101394001 Score: 188
Period size: 51 Copynumber: 2.4 Consensus size: 51
101393871 AACCAAGTTA
* *
101393881 TCCGGATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAATAAAGTAATTAT
1 TCCGGATGAAATATGAAGTTCTTGTTGAAGCTAGAGCAATAAAGTAATAAT
* * *
101393932 TTCGGATGAAATATGAAGTTCTTGTTGAAGCTAGAGCAATAAGGTAGTAAT
1 TCCGGATGAAATATGAAGTTCTTGTTGAAGCTAGAGCAATAAAGTAATAAT
*
101393983 TCCGGATGAAGTATGAAGT
1 TCCGGATGAAATATGAAGT
101394002 AAGTTTGAGA
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.30
Consensus pattern (51 bp):
TCCGGATGAAATATGAAGTTCTTGTTGAAGCTAGAGCAATAAAGTAATAAT
Found at i:101398971 original size:32 final size:32
Alignment explanation
Indices: 101398930--101398994 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
101398920 AATTAAGAAG
101398930 ATAGGAGTGAGCTATCATAGAATAGTCAATAA
1 ATAGGAGTGAGCTATCATAGAATAGTCAATAA
*
101398962 ATAGGAGTGAGCTGTCATAGAATAGTCAATAA
1 ATAGGAGTGAGCTATCATAGAATAGTCAATAA
101398994 A
1 A
101398995 ACAACTCGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.43, C:0.09, G:0.23, T:0.25
Consensus pattern (32 bp):
ATAGGAGTGAGCTATCATAGAATAGTCAATAA
Found at i:101402278 original size:23 final size:23
Alignment explanation
Indices: 101402248--101402293 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
101402238 TTGTGTAACG
101402248 CACATGACAGGGTGAAATAAAGT
1 CACATGACAGGGTGAAATAAAGT
101402271 CACATGACAGGGTGAAATAAAGT
1 CACATGACAGGGTGAAATAAAGT
101402294 TTCATTGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.13, G:0.26, T:0.17
Consensus pattern (23 bp):
CACATGACAGGGTGAAATAAAGT
Found at i:101405408 original size:17 final size:18
Alignment explanation
Indices: 101405386--101405420 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
101405376 ATAATTGTAA
101405386 TTTAAAT-TATAATTATT
1 TTTAAATATATAATTATT
*
101405403 TTTAAATATATGATTATT
1 TTTAAATATATAATTATT
101405421 ATCTCTTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
TTTAAATATATAATTATT
Found at i:101405686 original size:20 final size:20
Alignment explanation
Indices: 101405650--101405687 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
101405640 AAAATTGTGC
101405650 AAATAATATTTTGATTATAT
1 AAATAATATTTTGATTATAT
101405670 AAAT-ATATTTTGTATTAT
1 AAATAATATTTTG-ATTAT
101405688 TTATTAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (20 bp):
AAATAATATTTTGATTATAT
Found at i:101405828 original size:30 final size:30
Alignment explanation
Indices: 101405794--101405868 Score: 100
Period size: 30 Copynumber: 2.5 Consensus size: 30
101405784 TATATAAAGT
*
101405794 AAATA-ATAAATTTAAAATTGACTAATTTAA
1 AAATATATAAA-TTAAAATTGACTAAATTAA
*
101405824 AAATATATAAATTAAAATTGATTAAATT-A
1 AAATATATAAATTAAAATTGACTAAATTAA
*
101405853 AAATATAGAAATTAAA
1 AAATATATAAATTAAA
101405869 TCTATAATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
29 16 0.39
30 20 0.49
31 5 0.12
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (30 bp):
AAATATATAAATTAAAATTGACTAAATTAA
Found at i:101405865 original size:29 final size:30
Alignment explanation
Indices: 101405805--101405868 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 30
101405795 AATAATAAAT
* *
101405805 TTAAAATTGACTAATTTAAAAATATATAAA
1 TTAAAATTGACTAAATTAAAAATATAGAAA
*
101405835 TTAAAATTGATTAAATT-AAAATATAGAAA
1 TTAAAATTGACTAAATTAAAAATATAGAAA
101405864 TTAAA
1 TTAAA
101405869 TCTATAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
29 16 0.52
30 15 0.48
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.36
Consensus pattern (30 bp):
TTAAAATTGACTAAATTAAAAATATAGAAA
Found at i:101405866 original size:14 final size:14
Alignment explanation
Indices: 101405783--101405868 Score: 63
Period size: 15 Copynumber: 6.0 Consensus size: 14
101405773 TTGGAGTTTT
*
101405783 ATATATAAAGT-AA
1 ATATATAAATTAAA
101405796 ATA-ATAAATTTAAA
1 ATATATAAA-TTAAA
*
101405810 AT-TGACTAATTTAAAA
1 ATAT-A-TAAATT-AAA
101405826 ATATATAAATTAAA
1 ATATATAAATTAAA
101405840 AT-TGATTAAATTAAA
1 ATAT-A-TAAATTAAA
*
101405855 ATATAGAAATTAAA
1 ATATATAAATTAAA
101405869 TCTATAATTT
Statistics
Matches: 59, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
12 5 0.08
13 5 0.08
14 18 0.31
15 20 0.34
16 10 0.17
17 1 0.02
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (14 bp):
ATATATAAATTAAA
Found at i:101407835 original size:23 final size:24
Alignment explanation
Indices: 101407801--101407847 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
101407791 TCAAAATTAA
*
101407801 AAAAGTTTAG-AATTTTTTTATTT
1 AAAAGTTTAGAAATTTTTATATTT
101407824 AAAA-TTTGAGAAATTTTTATATTT
1 AAAAGTTT-AGAAATTTTTATATTT
101407848 TTTTTGAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 3 0.14
23 6 0.29
24 12 0.57
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (24 bp):
AAAAGTTTAGAAATTTTTATATTT
Found at i:101419509 original size:12 final size:13
Alignment explanation
Indices: 101419487--101419515 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
101419477 TAATTAAATG
101419487 AATTAAAAAGCCA
1 AATTAAAAAGCCA
101419500 AATT-AAAAGCCA
1 AATTAAAAAGCCA
101419512 AATT
1 AATT
101419516 TTGTCGATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.21
Consensus pattern (13 bp):
AATTAAAAAGCCA
Found at i:101420057 original size:19 final size:19
Alignment explanation
Indices: 101420033--101420075 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
101420023 GAATAGTATA
*
101420033 ATGATTAAATAATTTAAAT
1 ATGATTAAATAAGTTAAAT
101420052 ATGATTAAATAAGTTAAAT
1 ATGATTAAATAAGTTAAAT
*
101420071 GTGAT
1 ATGAT
101420076 ATTATAGATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.40
Consensus pattern (19 bp):
ATGATTAAATAAGTTAAAT
Found at i:101424644 original size:3 final size:3
Alignment explanation
Indices: 101424636--101424836 Score: 55
Period size: 3 Copynumber: 68.7 Consensus size: 3
101424626 TAGTAATAGG
* * * * *
101424636 AAT AAT AAT AAT AA- AAT ATT AAT GAT AAC GAT AAT AGAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
** * * * *
101424681 AAT AA- AAT AAT AA- AAT -AT GTT AAC AAG GAC AAT AAT AAT -AT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
101424724 AA- AAT GAAG AAT AAT AGT -GT ATT AAT GAT AAAT CAAG AAT AAT AAT
1 AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT AAT AAT AAT
* * * **
101424770 AAC AAC AAT AAC ACA- AAT AAT AAT ACAT AA- AA- AAT GGT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
**
101424814 AAT AAT AAT AAT GGT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA
101424837 CTTTAAAAAT
Statistics
Matches: 144, Mismatches: 40, Indels: 28
0.68 0.19 0.13
Matches are distributed among these distances:
2 21 0.15
3 111 0.77
4 12 0.08
ACGTcount: A:0.61, C:0.04, G:0.08, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:101424658 original size:14 final size:14
Alignment explanation
Indices: 101424636--101424697 Score: 54
Period size: 14 Copynumber: 4.3 Consensus size: 14
101424626 TAGTAATAGG
101424636 AATAATAATAATAA
1 AATAATAATAATAA
* *
101424650 AATATTAATGATAA
1 AATAATAATAATAA
* *
101424664 CGATAATAGAAAATAA
1 -AATAATA-ATAATAA
101424680 TAATAA-AATAATAA
1 -AATAATAATAATAA
101424694 AATA
1 AATA
101424698 TGTTAACAAG
Statistics
Matches: 37, Mismatches: 9, Indels: 5
0.73 0.18 0.10
Matches are distributed among these distances:
13 4 0.11
14 18 0.49
15 6 0.16
16 9 0.24
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (14 bp):
AATAATAATAATAA
Found at i:101425473 original size:15 final size:15
Alignment explanation
Indices: 101425429--101425469 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
101425419 TAGTAGTAGA
*
101425429 AATAAAGATAATAAT
1 AATAAATATAATAAT
*
101425444 AATAAATGTAATAAT
1 AATAAATATAATAAT
101425459 AAT-AATATAAT
1 AATAAATATAAT
101425470 TAATTAATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (15 bp):
AATAAATATAATAAT
Found at i:101426851 original size:12 final size:12
Alignment explanation
Indices: 101426834--101426869 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
101426824 TCTACTAGCT
101426834 CGTTAAAACCAG
1 CGTTAAAACCAG
101426846 CGTTAAAACCAG
1 CGTTAAAACCAG
101426858 CGTTAAAACCAG
1 CGTTAAAACCAG
101426870 AAATGAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.42, C:0.25, G:0.17, T:0.17
Consensus pattern (12 bp):
CGTTAAAACCAG
Found at i:101427054 original size:78 final size:78
Alignment explanation
Indices: 101426970--101427126 Score: 287
Period size: 78 Copynumber: 2.0 Consensus size: 78
101426960 CTTATTGAGT
**
101426970 ATGAAAATGACTTGAGAATTAATTTAAGTTTTTTGGATTATTATTTAATAAAATAATTGAAGTTC
1 ATGAAAATGACTTGAGAATTAATTTAAGTTTTTTAAATTATTATTTAATAAAATAATTGAAGTTC
101427035 TTAAATAGAATTA
66 TTAAATAGAATTA
*
101427048 ATGAAAATGACTTGAGAATTAATTTAATTTTTTTAAATTATTATTTAATAAAATAATTGAAGTTC
1 ATGAAAATGACTTGAGAATTAATTTAAGTTTTTTAAATTATTATTTAATAAAATAATTGAAGTTC
101427113 TTAAATAGAATTA
66 TTAAATAGAATTA
101427126 A
1 A
101427127 ATTAATTGAT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.44, C:0.03, G:0.11, T:0.43
Consensus pattern (78 bp):
ATGAAAATGACTTGAGAATTAATTTAAGTTTTTTAAATTATTATTTAATAAAATAATTGAAGTTC
TTAAATAGAATTA
Found at i:101431119 original size:22 final size:22
Alignment explanation
Indices: 101431091--101431134 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
101431081 AGATAAAGTA
*
101431091 GCCAATGCAAACTCTAAGGCTT
1 GCCAATGAAAACTCTAAGGCTT
101431113 GCCAATGAAAACTCTAAGGCTT
1 GCCAATGAAAACTCTAAGGCTT
101431135 TGTATGCCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (22 bp):
GCCAATGAAAACTCTAAGGCTT
Found at i:101441049 original size:2 final size:2
Alignment explanation
Indices: 101441042--101441075 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
101441032 GCACTTATGA
101441042 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
101441076 GGTATTTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:101441868 original size:40 final size:40
Alignment explanation
Indices: 101441667--101441861 Score: 311
Period size: 40 Copynumber: 4.9 Consensus size: 40
101441657 ATTCGGATTG
* *
101441667 ATAACCGGGCTAAG-CCCAAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
101441706 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
101441746 ATAACCGGGCCAAGTGCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
101441786 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
101441826 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
101441862 AGCTATATCA
Statistics
Matches: 144, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.09
40 131 0.91
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:101441887 original size:39 final size:40
Alignment explanation
Indices: 101441667--101441887 Score: 169
Period size: 40 Copynumber: 5.6 Consensus size: 40
101441657 ATTCGGATTG
* * * * * *
101441667 ATAACCGGGCT-AAGCCCAAAGGCATTTGTGCGAGTTATT
1 ATAACCAGGCTAAAACCCGAAGGCAATTGAGCGAGTTACT
* * ** * *
101441706 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCAGGCTAAAACCCGAAGGCAATTGAGCGAGTTACT
* * *** *
101441746 ATAACCGGGCCAAGTGCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCAGGCTAAAACCCGAAGGCAATTGAGCGAGTTACT
* ** *
101441786 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCAGGCTAAAACCCGAAGGCAATTGAGCGAGTTACT
* ** *
101441826 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCAGGCTAAAACCCGAAGGCAATTGAGCGAGTTA-CT
*
101441866 AT-ATCAGGCTAAAACCCGAAGG
1 ATAACCAGGCTAAAACCCGAAGG
101441888 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 28 0.17
40 135 0.83
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCAGGCTAAAACCCGAAGGCAATTGAGCGAGTTACT
Found at i:101444693 original size:21 final size:21
Alignment explanation
Indices: 101444667--101444710 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
101444657 ACCTAGAGTT
101444667 AGTTGCTCTTACTCTCGAAAG
1 AGTTGCTCTTACTCTCGAAAG
101444688 AGTTGCTCTTACTCTCGAAAG
1 AGTTGCTCTTACTCTCGAAAG
101444709 AG
1 AG
101444711 ATATTAGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (21 bp):
AGTTGCTCTTACTCTCGAAAG
Found at i:101447671 original size:18 final size:19
Alignment explanation
Indices: 101447648--101447699 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 19
101447638 AATATTAATG
101447648 AAATTAAAAAAATAA-TTT
1 AAATTAAAAAAATAACTTT
101447666 AAATTATAAATAAAAATAACTTT
1 AAA-T-T-AA-AAAAATAACTTT
101447689 AAA-TAAAAAAA
1 AAATTAAAAAAA
101447700 CTCATCATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
18 8 0.28
19 3 0.10
20 2 0.07
21 2 0.07
22 8 0.28
23 6 0.21
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (19 bp):
AAATTAAAAAAATAACTTT
Found at i:101447701 original size:15 final size:16
Alignment explanation
Indices: 101447672--101447701 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
101447662 ATTTAAATTA
101447672 TAAATAAAAATAACTT
1 TAAATAAAAATAACTT
101447688 TAAATAAAAA-AACT
1 TAAATAAAAATAACT
101447702 CATCATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (16 bp):
TAAATAAAAATAACTT
Found at i:101448211 original size:105 final size:105
Alignment explanation
Indices: 101448017--101448224 Score: 275
Period size: 105 Copynumber: 2.0 Consensus size: 105
101448007 TTAAACTAAT
*
101448017 ATTTATTACTTTGTTAAAATAAAGAATGTTTGGTCATTTAATAACTGAGTTGAAACTCGGTTATG
1 ATTTATTACTTTGTTAAAATAAAGAATGTTTGGTAATTTAATAACTGAGTTGAAACTCGGTTATG
*
101448082 GATGACATCAACTTAATTAAAATCTTTATATATAGTATGG
66 GATGACATCAAATTAATTAAAATCTTTATATATAGTATGG
* * *
101448122 ATTTATTGCTTTGTTAAAATAAATGTAT-TTTGGTAATTTAATAACTTAGTT-AAGA-TCCGGTT
1 ATTTATTACTTTGTTAAAATAAA-GAATGTTTGGTAATTTAATAACTGAGTTGAA-ACT-CGGTT
101448184 AT-GAGTGACA-CAAATTCAA-TAAGAATCTTTATATATAGTAT
63 ATGGA-TGACATCAAATT-AATTAA-AATCTTTATATATAGTAT
101448225 ATATATACAA
Statistics
Matches: 92, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
104 13 0.14
105 76 0.83
106 3 0.03
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (105 bp):
ATTTATTACTTTGTTAAAATAAAGAATGTTTGGTAATTTAATAACTGAGTTGAAACTCGGTTATG
GATGACATCAAATTAATTAAAATCTTTATATATAGTATGG
Found at i:101448517 original size:2 final size:2
Alignment explanation
Indices: 101448504--101448537 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
101448494 GCCAGAGACT
*
101448504 TA TA TA TC TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
101448538 GGAAAATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:101449763 original size:16 final size:16
Alignment explanation
Indices: 101449742--101449776 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
101449732 TGCGATCAGA
101449742 TCACCTAAAAATTTGG
1 TCACCTAAAAATTTGG
101449758 TCACCTAAAAATTTGG
1 TCACCTAAAAATTTGG
101449774 TCA
1 TCA
101449777 TTTTAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.31
Consensus pattern (16 bp):
TCACCTAAAAATTTGG
Found at i:101451051 original size:3 final size:3
Alignment explanation
Indices: 101451043--101451172 Score: 54
Period size: 3 Copynumber: 43.7 Consensus size: 3
101451033 AATATTATGC
* * * *
101451043 TAA TAA TAA TAG TAA TAA T-A TAA TAA TAA CAA TAA CAA TAG TGAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
* * * * * ** *
101451088 T-A GAA TAA TGA CAA -AA GTAG TAA TAA GAA TGG TAA -AA -AA AAA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA
** *
101451130 TAA TAA TAA TAA TGGG TAA TAA TAA TAA TGA TAA TAAA TAA TA
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA T-AA TAA TA
101451173 GTAAAAGAAA
Statistics
Matches: 91, Mismatches: 28, Indels: 16
0.67 0.21 0.12
Matches are distributed among these distances:
2 9 0.10
3 75 0.82
4 7 0.08
ACGTcount: A:0.60, C:0.02, G:0.11, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:101451082 original size:20 final size:20
Alignment explanation
Indices: 101451043--101451082 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
101451033 AATATTATGC
* * *
101451043 TAATAATAATAGTAATAATA
1 TAATAATAACAATAACAATA
101451063 TAATAATAACAATAACAATA
1 TAATAATAACAATAACAATA
101451083 GTGAATAGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (20 bp):
TAATAATAACAATAACAATA
Found at i:101451151 original size:16 final size:15
Alignment explanation
Indices: 101451129--101451172 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 15
101451119 GTAAAAAAAA
101451129 ATAATAATAATAATGG
1 ATAATAATAATAAT-G
*
101451145 GTAATAATAATAATG
1 ATAATAATAATAATG
101451160 ATAATAAATAATA
1 ATAAT-AATAATA
101451173 GTAAAAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 5 0.20
16 20 0.80
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (15 bp):
ATAATAATAATAATG
Found at i:101455031 original size:2 final size:2
Alignment explanation
Indices: 101455024--101455053 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
101455014 GAGGAGGAAA
*
101455024 AT AT AT AT AT AT AT AT AT TT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
101455054 GGATATTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:101462768 original size:13 final size:13
Alignment explanation
Indices: 101462746--101462778 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
101462736 TTCAAATAAC
101462746 TATA-TTTAAGAT
1 TATATTTTAAGAT
101462758 TATATTTTAAGAT
1 TATATTTTAAGAT
101462771 TATATTTT
1 TATATTTT
101462779 CTCCAACTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (13 bp):
TATATTTTAAGAT
Found at i:101466045 original size:24 final size:23
Alignment explanation
Indices: 101466010--101466059 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 23
101466000 GATGTATCAC
101466010 CTCGTAAGAGCTTA-CTGTTTTCAG
1 CTCGTAAGAGCTTATC-G-TTTCAG
101466034 CTCGTCAA-AGCTTATCGTTTCAG
1 CTCGT-AAGAGCTTATCGTTTCAG
101466057 CTC
1 CTC
101466060 AATAGAGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
23 9 0.38
24 12 0.50
25 3 0.12
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.36
Consensus pattern (23 bp):
CTCGTAAGAGCTTATCGTTTCAG
Found at i:101466085 original size:25 final size:24
Alignment explanation
Indices: 101466055--101466116 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
101466045 TTATCGTTTC
*
101466055 AGCTCAATAGAGCTTACT-ATCCATT
1 AGCTCAAAAGAGCTTACTGAT-CA-T
* *
101466080 AGCTCAGGAGGAGCTTACTGATCAT
1 AGCTCA-AAAGAGCTTACTGATCAT
101466105 AGCTCAAAAGAG
1 AGCTCAAAAGAG
101466117 TGAAAATGAG
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
24 4 0.13
25 13 0.43
26 11 0.37
27 2 0.07
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (24 bp):
AGCTCAAAAGAGCTTACTGATCAT
Found at i:101467636 original size:93 final size:93
Alignment explanation
Indices: 101467524--101467694 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
101467514 GCCCCTAAGT
* *
101467524 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
101467588 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
*
101467617 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
101467682 CGAGTTCGGATGC
66 CGAGTTCGGATGC
101467695 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:101467689 original size:46 final size:46
Alignment explanation
Indices: 101467519--101467691 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
101467509 AACCAGCCCC
* *
101467519 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCA
* * *
101467565 TAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
101467613 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
101467658 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
101467692 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 12, Indels: 20
0.77 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 58 0.55
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:101475293 original size:23 final size:23
Alignment explanation
Indices: 101475263--101475310 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
101475253 GTAAGAGTAA
101475263 TATTGAAATCATCTTCTTTACTT
1 TATTGAAATCATCTTCTTTACTT
101475286 TATTGAAATCATCTTCTTTACTT
1 TATTGAAATCATCTTCTTTACTT
101475309 TA
1 TA
101475311 CTTGCCTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.04, T:0.52
Consensus pattern (23 bp):
TATTGAAATCATCTTCTTTACTT
Found at i:101478552 original size:18 final size:18
Alignment explanation
Indices: 101478531--101478589 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
101478521 TTTGCATAAA
*
101478531 TAATACAGTTCGCCAAAT
1 TAATACAATTCGCCAAAT
* *
101478549 TAATACAATTTGCCAAGT
1 TAATACAATTCGCCAAAT
* *
101478567 TAATACAAATCGCCATAT
1 TAATACAATTCGCCAAAT
101478585 TAATA
1 TAATA
101478590 TAGTTCACAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (18 bp):
TAATACAATTCGCCAAAT
Found at i:101480940 original size:35 final size:35
Alignment explanation
Indices: 101480899--101481053 Score: 150
Period size: 35 Copynumber: 4.4 Consensus size: 35
101480889 AAGGTTCATT
*
101480899 ATATCATCACATATGGCCAAATATACAAGTACAAA
1 ATATCATCACATATGGCCAAATATACAAGTTCAAA
* * * *
101480934 ATATCATCATATATGACCCAATATACAAGCTCAATA
1 ATATCATCACATATGGCCAAATATACAAGTTCAA-A
* * * * * * *
101480970 A-AACATCACATGTAGTCAAATATTCAAGTTTAAT
1 ATATCATCACATATGGCCAAATATACAAGTTCAAA
* * * *
101481004 ATAACATCACATGTGGCCAAATATATAAGTTCAAT
1 ATATCATCACATATGGCCAAATATACAAGTTCAAA
101481039 ATATCATCACATATG
1 ATATCATCACATATG
101481054 TACATACCTA
Statistics
Matches: 95, Mismatches: 23, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
34 1 0.01
35 92 0.97
36 2 0.02
ACGTcount: A:0.45, C:0.19, G:0.08, T:0.28
Consensus pattern (35 bp):
ATATCATCACATATGGCCAAATATACAAGTTCAAA
Found at i:101483307 original size:79 final size:79
Alignment explanation
Indices: 101483177--101483324 Score: 194
Period size: 79 Copynumber: 1.9 Consensus size: 79
101483167 ATTGAATGAT
*
101483177 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGA-CCGAAGGCAATT
1 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
101483241 GTGCTAGTGGCTAC
66 GTGCTAGTGGCTAC
* * * *
101483255 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
101483318 TTTGTGC
63 ATTGTGC
101483325 ACGTGGTTAT
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
78 16 0.27
79 29 0.48
80 15 0.25
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (79 bp):
ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
GTGCTAGTGGCTAC
Found at i:101483338 original size:40 final size:40
Alignment explanation
Indices: 101483212--101483340 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
101483202 ATGCTGGAAA
* * *
101483212 TTATATCCGGGTTAAGA-CCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
101483251 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
101483291 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
101483331 TTATATCCGG
1 TTATATCCGG
101483341 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
39 15 0.21
40 56 0.79
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:101491988 original size:40 final size:40
Alignment explanation
Indices: 101491914--101492135 Score: 376
Period size: 40 Copynumber: 5.6 Consensus size: 40
101491904 AACCCAAGTA
* *
101491914 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
101491953 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
101491993 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
101492033 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
101492073 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
101492113 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
101492136 CATTCGAATA
Statistics
Matches: 173, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 12 0.07
40 158 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:101500211 original size:40 final size:40
Alignment explanation
Indices: 101500137--101500357 Score: 367
Period size: 40 Copynumber: 5.6 Consensus size: 40
101500127 AACCCAAGTA
* *
101500137 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
101500176 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
101500216 CCTTC-GGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
101500255 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
101500295 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
101500335 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
101500358 CATTCGAATA
Statistics
Matches: 171, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 48 0.28
40 120 0.70
41 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:101500268 original size:79 final size:80
Alignment explanation
Indices: 101500137--101500357 Score: 367
Period size: 79 Copynumber: 2.8 Consensus size: 80
101500127 AACCCAAGTA
* * *
101500137 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
101500200 GTCAATAGCACAAAAG
65 GTCAATAGCACAAAAG
101500216 CCTTC-GGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
101500280 TCAATAGCACAAATG
66 TCAATAGCACAAAAG
*
101500295 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
101500358 CATTCGAATA
Statistics
Matches: 134, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
78 7 0.05
79 70 0.52
80 57 0.43
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCAATAGCACAAAAG
Found at i:101502228 original size:39 final size:39
Alignment explanation
Indices: 101502174--101502276 Score: 170
Period size: 39 Copynumber: 2.6 Consensus size: 39
101502164 GGGCTGTCAC
*
101502174 AGTCCGGATATAATTCTCGCATATAGCCTGCAGACATGA
1 AGTCCGGATATAATTCTCGCATATAGCCTACAGACATGA
* * *
101502213 AGTCCGGATATAATTCTCGCTTATAGCCTACGGACCTGA
1 AGTCCGGATATAATTCTCGCATATAGCCTACAGACATGA
101502252 AGTCCGGATATAATTCTCGCATATA
1 AGTCCGGATATAATTCTCGCATATA
101502277 TATATTCATA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 59 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (39 bp):
AGTCCGGATATAATTCTCGCATATAGCCTACAGACATGA
Found at i:101506083 original size:44 final size:42
Alignment explanation
Indices: 101505993--101506110 Score: 148
Period size: 44 Copynumber: 2.8 Consensus size: 42
101505983 CCATACTACT
* * * *
101505993 GTCCCAGACAGGGTTTTACACGAAATCAAATACGATGCCAAT
1 GTCCTAGACATGGTCTTACACGAAATCAAATACGATGCCAAC
101506035 GTCCTAGACATGGTCTTACACGTAAATCTCAAAT-CGATGCCAAC
1 GTCCTAGACATGGTCTTACACG-AAA--TCAAATACGATGCCAAC
* *
101506079 GTCCTAGACGTGGTCTTACACAAAATCAAATA
1 GTCCTAGACATGGTCTTACACGAAATCAAATA
101506111 TCGGAATCCT
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
41 6 0.09
42 19 0.29
43 6 0.09
44 29 0.44
45 6 0.09
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.24
Consensus pattern (42 bp):
GTCCTAGACATGGTCTTACACGAAATCAAATACGATGCCAAC
Found at i:101509446 original size:22 final size:22
Alignment explanation
Indices: 101509406--101509448 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
101509396 CACTAAGTCA
* *
101509406 ACAGAACGGATCAATGCCATAG
1 ACAGAACGGATAAAGGCCATAG
*
101509428 ACAGAACGGCTAAAGGCCATA
1 ACAGAACGGATAAAGGCCATA
101509449 AATATCTCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.42, C:0.23, G:0.23, T:0.12
Consensus pattern (22 bp):
ACAGAACGGATAAAGGCCATAG
Found at i:101509715 original size:27 final size:26
Alignment explanation
Indices: 101509685--101509773 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 26
101509675 CATAATCATC
*
101509685 ATTTTACCGTACAGGGGTATTACGGTT
1 ATTTTACC-TACAAGGGTATTACGGTT
** *
101509712 ATTTTACCCTACAAGGGCGTTACAGTT
1 ATTTTA-CCTACAAGGGTATTACGGTT
* *
101509739 ATTTTACACTACAAGGGTATTTCGGTA
1 ATTTTAC-CTACAAGGGTATTACGGTT
101509766 AGTTTTAC
1 A-TTTTAC
101509774 ACATTGAGGG
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
26 1 0.02
27 41 0.82
28 8 0.16
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (26 bp):
ATTTTACCTACAAGGGTATTACGGTT
Found at i:101514537 original size:30 final size:30
Alignment explanation
Indices: 101514482--101514612 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
101514472 ATAGTGAATC
*
101514482 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
101514511 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
101514541 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
101514569 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
101514599 CGCACACTTAGTGC
1 CGCACACTTAGTGC
101514613 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:101514592 original size:58 final size:58
Alignment explanation
Indices: 101514481--101514612 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
101514471 TATAGTGAAT
* * * * *
101514481 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
101514540 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
101514598 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
101514613 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:101522495 original size:30 final size:30
Alignment explanation
Indices: 101522440--101522570 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
101522430 ATAGTGAATC
*
101522440 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
101522469 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
101522499 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
101522527 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
101522557 CGCACACTTAGTGC
1 CGCACACTTAGTGC
101522571 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:101522550 original size:58 final size:58
Alignment explanation
Indices: 101522439--101522570 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
101522429 TATAGTGAAT
* * * * *
101522439 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
101522498 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
101522556 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
101522571 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:101524376 original size:22 final size:22
Alignment explanation
Indices: 101524315--101524376 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
101524305 AATATGATTA
* *
101524315 GCACAGAGCCATAATCAAGATG
1 GCACAGAGCCATAATTAGGATG
* *
101524337 GCACAGAGCCATATTTAGGTTG
1 GCACAGAGCCATAATTAGGATG
*
101524359 GCACAAAGCCATAATTAG
1 GCACAGAGCCATAATTAG
101524377 ATTACGTGGC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (22 bp):
GCACAGAGCCATAATTAGGATG
Found at i:101524655 original size:34 final size:35
Alignment explanation
Indices: 101524616--101524690 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 35
101524606 TAAAAGCATA
* *
101524616 ACAGTCATACGA-CTACAGTTAAGTCAGTTAAA-AC
1 ACAGTCATACGATC-ACAGTCAAATCAGTTAAATAC
*
101524650 ACAGTCATACGATCACAGTCAAATCAGTTAAATTC
1 ACAGTCATACGATCACAGTCAAATCAGTTAAATAC
101524685 ACAGTC
1 ACAGTC
101524691 TAAGTTGGTC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
34 28 0.78
35 8 0.22
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.24
Consensus pattern (35 bp):
ACAGTCATACGATCACAGTCAAATCAGTTAAATAC
Found at i:101524918 original size:82 final size:81
Alignment explanation
Indices: 101524778--101525006 Score: 293
Period size: 82 Copynumber: 2.8 Consensus size: 81
101524768 GGTATTTTAG
* * *
101524778 TAATTTCACAAATTGGAGGTATTTCGGTAATTTTACAAACT-AAGGGTATTTC-GATAATTTTAC
1 TAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAAACTGAA-GGTATTTCAG-TAATTTTAC
101524841 AAAGTAAAGGTATTTCGA
64 AAAGTAAAGGTATTTCGA
* * *
101524859 TAATTTTACAATCTGGGGGTCTTTC-GTCAAATTTTACAAATTGAAGGTATTTCAGTAATTTTAC
1 TAATTTTACAAACTGGGGGTATTTCGGT--AATTTTACAAACTGAAGGTATTTCAGTAATTTTAC
* **
101524923 AAATTAGGGGTATTTCGA
64 AAAGTAAAGGTATTTCGA
** *
101524941 TAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAAACTGGGGGTATTTTAGTAATTTTACAA
1 TAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAAACTGAAGGTATTTCAGTAATTTTACAA
101525006 A
66 A
101525007 CTGGGGTCTT
Statistics
Matches: 128, Mismatches: 15, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
80 2 0.02
81 54 0.42
82 67 0.52
83 5 0.04
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (81 bp):
TAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAAACTGAAGGTATTTCAGTAATTTTACAA
AGTAAAGGTATTTCGA
Found at i:101524919 original size:109 final size:109
Alignment explanation
Indices: 101524779--101524987 Score: 319
Period size: 109 Copynumber: 1.9 Consensus size: 109
101524769 GTATTTTAGT
* *
101524779 AATTTCACAAATTGGAGGTATTTCGGTAATTTTACAAACTAAGGGTATTTCGATAATTTTACAAA
1 AATTTCACAAATTGAAGGTATTTCAGTAATTTTACAAACTAAGGGTATTTCGATAATTTTACAAA
* *
101524844 GTAAAGGTATTTCGATAATTTTACAATCTGGGGGTCTTTCGTCA
66 CTAAAGGTATTTCGATAATTTTACAAACTGGGGGTCTTTCGTCA
* * *
101524888 AATTTTACAAATTGAAGGTATTTCAGTAATTTTACAAATTAGGGGTATTTCGATAATTTTACAAA
1 AATTTCACAAATTGAAGGTATTTCAGTAATTTTACAAACTAAGGGTATTTCGATAATTTTACAAA
*** *
101524953 CTGGGGGTATTTCGGTAATTTTACAAACTGGGGGT
66 CTAAAGGTATTTCGATAATTTTACAAACTGGGGGT
101524988 ATTTTAGTAA
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
109 89 1.00
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.38
Consensus pattern (109 bp):
AATTTCACAAATTGAAGGTATTTCAGTAATTTTACAAACTAAGGGTATTTCGATAATTTTACAAA
CTAAAGGTATTTCGATAATTTTACAAACTGGGGGTCTTTCGTCA
Found at i:101525007 original size:27 final size:27
Alignment explanation
Indices: 101524767--101525012 Score: 209
Period size: 27 Copynumber: 9.1 Consensus size: 27
101524757 TACACTACAA
* * *
101524767 GGGTATTTTAGTAATTTCACAAATTGG
1 GGGTATTTTCGTAATTTTACAAACTGG
* **
101524794 AGGTA-TTTCGGTAATTTTACAAACTAA
1 GGGTATTTTC-GTAATTTTACAAACTGG
* **
101524821 GGGTA-TTTCGATAATTTTACAAAGTAA
1 GGGTATTTTCG-TAATTTTACAAACTGG
* *
101524848 AGGTA-TTTCGATAATTTTACAATCTGG
1 GGGTATTTTCG-TAATTTTACAAACTGG
* * *
101524875 GGGT-CTTTCGTCAAATTTTACAAATTGA
1 GGGTATTTTCGT--AATTTTACAAACTGG
* * *
101524903 AGGTA-TTTCAGTAATTTTACAAATTAG
1 GGGTATTTTC-GTAATTTTACAAACTGG
101524930 GGGTA-TTTCGATAATTTTACAAACTGG
1 GGGTATTTTCG-TAATTTTACAAACTGG
101524957 GGGTA-TTTCGGTAATTTTACAAACTGG
1 GGGTATTTTC-GTAATTTTACAAACTGG
*
101524984 GGGTATTTTAGTAATTTTACAAACTGG
1 GGGTATTTTCGTAATTTTACAAACTGG
101525011 GG
1 GG
101525013 TCTTAATGAC
Statistics
Matches: 185, Mismatches: 24, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
26 6 0.03
27 154 0.83
28 23 0.12
29 2 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTCGTAATTTTACAAACTGG
Found at i:101525012 original size:54 final size:53
Alignment explanation
Indices: 101524739--101525010 Score: 276
Period size: 54 Copynumber: 5.0 Consensus size: 53
101524729 TTACCCTACA
* * * * * * *
101524739 GAGGTATTTCGATAATTGTACACTAC-AAGGGTATTTTAGTAATTTCACAAATTG
1 GAGGTATTTCGGTAATTTTACA-AACTAGGGGTA-TTTCGTAATTTTACAAACTG
* * *
101524793 GAGGTATTTCGGTAATTTTACAAACTAAGGGTATTTCGATAATTTTACAAAGTA
1 GAGGTATTTCGGTAATTTTACAAACTAGGGGTATTTCG-TAATTTTACAAACTG
* * * * * *
101524847 AAGGTATTTCGATAATTTTACAATCTGGGGGTCTTTCGTCAAATTTTACAAATTG
1 GAGGTATTTCGGTAATTTTACAAACTAGGGGTATTTCGT--AATTTTACAAACTG
* * *
101524902 AAGGTATTTCAGTAATTTTACAAATTAGGGGTATTTCGATAATTTTACAAACTG
1 GAGGTATTTCGGTAATTTTACAAACTAGGGGTATTTCG-TAATTTTACAAACTG
* * *
101524956 GGGGTATTTCGGTAATTTTACAAACTGGGGGTATTTTAGTAATTTTACAAACTG
1 GAGGTATTTCGGTAATTTTACAAACTAGGGGTA-TTTCGTAATTTTACAAACTG
101525010 G
1 G
101525011 GGTCTTAATG
Statistics
Matches: 184, Mismatches: 28, Indels: 12
0.82 0.12 0.05
Matches are distributed among these distances:
53 7 0.04
54 128 0.70
55 48 0.26
56 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.38
Consensus pattern (53 bp):
GAGGTATTTCGGTAATTTTACAAACTAGGGGTATTTCGTAATTTTACAAACTG
Found at i:101525260 original size:19 final size:19
Alignment explanation
Indices: 101525234--101525275 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
101525224 AGCCCACGAA
* *
101525234 CCCATTAGGTCC-ACACGG
1 CCCATTAGGCCCAACAAGG
101525252 CCCATTTAGGCCCAACAAGG
1 CCCA-TTAGGCCCAACAAGG
101525272 CCCA
1 CCCA
101525276 GAACTACCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 4 0.20
19 7 0.35
20 9 0.45
ACGTcount: A:0.26, C:0.40, G:0.19, T:0.14
Consensus pattern (19 bp):
CCCATTAGGCCCAACAAGG
Found at i:101526175 original size:2 final size:2
Alignment explanation
Indices: 101526168--101526198 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
101526158 AAAAGAAAAT
101526168 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
101526199 TTGATTCGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:101541036 original size:17 final size:17
Alignment explanation
Indices: 101540994--101541037 Score: 65
Period size: 16 Copynumber: 2.6 Consensus size: 17
101540984 GCCGCTGCTT
101540994 TTCTTTATTTTCTTTTA
1 TTCTTTATTTTCTTTTA
101541011 --CTGTTATTTTCTTTTA
1 TTCT-TTATTTTCTTTTA
101541027 TTCTTTATTTT
1 TTCTTTATTTT
101541038 AGTTTAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
15 2 0.08
16 13 0.54
17 7 0.29
18 2 0.08
ACGTcount: A:0.11, C:0.11, G:0.02, T:0.75
Consensus pattern (17 bp):
TTCTTTATTTTCTTTTA
Found at i:101551480 original size:40 final size:39
Alignment explanation
Indices: 101551346--101551514 Score: 214
Period size: 39 Copynumber: 4.3 Consensus size: 39
101551336 GGACTAAGAT
* *
101551346 CCGAAGGCGTTCGTGCGAGTTAATAAATCTGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
*
101551385 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
* * *
101551424 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAG-C
* * * *
101551464 TCGAAGGCATTCGTGCGAGTTACTATAATCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTAATA-AATCCGGGTTAAG-C
101551504 CCGAAGGCATT
1 CCGAAGGCATT
101551515 TGAGCTAGTC
Statistics
Matches: 117, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
39 72 0.62
40 37 0.32
41 8 0.07
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
Found at i:101551549 original size:79 final size:78
Alignment explanation
Indices: 101551376--101551524 Score: 192
Period size: 80 Copynumber: 1.9 Consensus size: 78
101551366 TAATAAATCT
* * *
101551376 GGGTTAAGCCCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGTGCG
1 GGGTTAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCG
*
101551441 AGTTACTAAACCC
66 AGTCACTAAACCC
* * *
101551454 GGGTTAAGTCTCGAAGGCATTCGTGCGAGTTACTATAATCGGGGTT-TGTCCCGAAGGCATTTGA
1 GGGTTAAGTC-CGAAGGCATTCGTGCGAGTTAATA-AATCCGGGTTAAG-CCCGAAGGCATTTGA
*
101551518 GCTAGTC
63 GCGAGTC
101551525 GTTATATCCG
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
78 9 0.15
79 23 0.38
80 28 0.47
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (78 bp):
GGGTTAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCG
AGTCACTAAACCC
Found at i:101559492 original size:39 final size:40
Alignment explanation
Indices: 101559411--101559579 Score: 213
Period size: 39 Copynumber: 4.3 Consensus size: 40
101559401 GGACTAAGAT
* *
101559411 CGAAGGCGTTCGTGCGAGTTAATAAAT-CGGGTTAAG-CC
1 CGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTCC
101559449 CGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAG-CC
1 CGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTCC
* *
101559488 CGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTCC
* * * *
101559528 CGAAGGCATTCGTGTGAGTTACTATAA-CCGGGGTT-TGTCC
1 CGAAGGCATTTGTGCGAGTTAATA-AATCC-GGGTTAAGTCC
101559568 CGAAGGCATTTG
1 CGAAGGCATTTG
101559580 AGCTAGTCGT
Statistics
Matches: 119, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
38 25 0.21
39 46 0.39
40 41 0.34
41 7 0.06
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTCC
Found at i:101559602 original size:79 final size:79
Alignment explanation
Indices: 101559438--101559587 Score: 189
Period size: 79 Copynumber: 1.9 Consensus size: 79
101559428 GTTAATAAAT
* *
101559438 CGGGTTAAG-CCCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGTG
1 CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAG
*
101559502 CGAGTTACTAAACC
66 CGAGTCACTAAACC
* * *
101559516 CGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTACTATAA-CCGGGGTT-TGTCCCGAAGGCATTT
1 CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTAATA-AATCC-GGGTTAAG-CCCGAAGGCATTT
*
101559579 GAGCTAGTC
63 GAGCGAGTC
101559588 GTTATATCCG
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
78 9 0.15
79 26 0.43
80 26 0.43
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (79 bp):
CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAG
CGAGTCACTAAACC
Found at i:101561287 original size:56 final size:56
Alignment explanation
Indices: 101561225--101561445 Score: 291
Period size: 56 Copynumber: 3.9 Consensus size: 56
101561215 TCTTACATGT
* * * * *
101561225 AATCACATATCAATGCTAATGTATTAAACGTGGTCTTAGTCGCTCACATACATCGA
1 AATCACATATCAATGCCAACGTATTAAACGTGGTCTTACTCGCACACATACATCGG
* * * *
101561281 AATCACATATCGATGCCAACGTATTAAACATTGTCTTACTCGCACACATATATCGG
1 AATCACATATCAATGCCAACGTATTAAACGTGGTCTTACTCGCACACATACATCGG
* * *
101561337 AATCACATATCGATGCCAACGTGTTAAACGTGGTCTTACTCGCACACATATATCGG
1 AATCACATATCAATGCCAACGTATTAAACGTGGTCTTACTCGCACACATACATCGG
* * *
101561393 AATCACATATCAACT-TCAACATATTAAACGTGGTCTTACTCACACACATACAT
1 AATCACATATCAA-TGCCAACGTATTAAACGTGGTCTTACTCGCACACATACAT
101561446 GGATGCCATG
Statistics
Matches: 146, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
56 145 0.99
57 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (56 bp):
AATCACATATCAATGCCAACGTATTAAACGTGGTCTTACTCGCACACATACATCGG
Found at i:101562665 original size:27 final size:27
Alignment explanation
Indices: 101562635--101562686 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
101562625 TAGTAACAGT
*
101562635 TGGGCCT-AGCCCATTAACAGAATCAGG
1 TGGGCCTAAGCCCAGT-ACAGAATCAGG
101562662 TGGGCCTAAGCCCAGTACAGAATCA
1 TGGGCCTAAGCCCAGTACAGAATCA
101562687 ATAGCAGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.31, C:0.27, G:0.25, T:0.17
Consensus pattern (27 bp):
TGGGCCTAAGCCCAGTACAGAATCAGG
Found at i:101562860 original size:22 final size:22
Alignment explanation
Indices: 101562828--101562908 Score: 92
Period size: 22 Copynumber: 3.7 Consensus size: 22
101562818 CACTAAGTCA
* * *
101562828 ACAGGATGGCTCAACGCCGTAG
1 ACAGGACGGCTCAAAGCCATAG
* *
101562850 ATAGGACGGCTCAATGCCATAG
1 ACAGGACGGCTCAAAGCCATAG
* *
101562872 ACAGGACGACTCAAAGTCATAG
1 ACAGGACGGCTCAAAGCCATAG
101562894 ACAGGACGGCT-AAAG
1 ACAGGACGGCTCAAAG
101562909 GCCGTAAATA
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
21 4 0.08
22 46 0.92
ACGTcount: A:0.35, C:0.23, G:0.28, T:0.14
Consensus pattern (22 bp):
ACAGGACGGCTCAAAGCCATAG
Found at i:101563208 original size:27 final size:27
Alignment explanation
Indices: 101563149--101563209 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
101563139 GGCATAATCA
* *
101563149 TCATTCTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGCATTACGG
*
101563176 TCATTTTACCCTACAGGGGCATTACGG
1 TCATTTTACCATACAGGGGCATTACGG
101563203 TCATTTT
1 TCATTTT
101563210 GCACTATAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGCATTACGG
Found at i:101566800 original size:28 final size:28
Alignment explanation
Indices: 101566768--101566866 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
101566758 TGCATAAGCC
*
101566768 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
101566796 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
101566824 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
101566853 CGCACACTTAGTGC
1 CGCACACTTAGTGC
101566867 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:101574464 original size:28 final size:28
Alignment explanation
Indices: 101574432--101574530 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
101574422 TGCATAAGCC
*
101574432 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
101574460 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
101574488 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
101574517 CGCACACTTAGTGC
1 CGCACACTTAGTGC
101574531 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:101580524 original size:6 final size:6
Alignment explanation
Indices: 101580513--101580583 Score: 56
Period size: 6 Copynumber: 11.5 Consensus size: 6
101580503 TATCAAAACT
* * *
101580513 AGAATC AGAATC AGAATC AG-GTGAC AAAATC AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC
*
101580562 AGGTAA-C AGAATC AAAATC AGA
1 A-G-AATC AGAATC AGAATC AGA
101580584 TTGTGAATGC
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
5 3 0.06
6 41 0.80
7 5 0.10
8 2 0.04
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:101580548 original size:31 final size:31
Alignment explanation
Indices: 101580513--101580583 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
101580503 TATCAAAACT
*
101580513 AGAATCAGAATCAGAATCAGGTGACAAAATC
1 AGAATCAGAATCAGAATCAGGTAACAAAATC
* *
101580544 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAAAATC
*
101580575 AAAATCAGA
1 AGAATCAGA
101580584 TTGTGAATGC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.17
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAAAATC
Found at i:101580850 original size:27 final size:26
Alignment explanation
Indices: 101580802--101580853 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
101580792 GCGAGGCTGC
*
101580802 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
101580828 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
101580854 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:101581120 original size:27 final size:27
Alignment explanation
Indices: 101581090--101581576 Score: 615
Period size: 27 Copynumber: 18.2 Consensus size: 27
101581080 AACACCCTAG
* *
101581090 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
** *
101581117 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
101581144 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
101581171 GGGTAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
101581198 GGGTAAAATAGTAATTCTATCAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
101581225 GGGTAAAATAGTAATTCTGTAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
101581252 GGGTAAAACAGTAATTTTGTAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
101581279 GGGT-AAA-CG--GTTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
101581302 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
101581329 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* * *
101581356 GGGTAAAATAGTAATTCTATCAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
** * * *
101581383 GGGTAAAACGGTAGTTCTGTCAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
101581410 GGGTAAAACAGTAATTTTTTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
* *
101581437 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
101581464 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
101581491 GGGTAAAACT-GTAATTTTGTAAATCGA
1 GGGTAAAA-TAGTAATTTTGTAAATCGA
* *
101581518 GGGTAAAATAATAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
*
101581545 GGGTAAAATAGTAATTTTGTAATTCGA
1 GGGTAAAATAGTAATTTTGTAAATCGA
101581572 GGGTA
1 GGGTA
101581577 CTTTGATAAT
Statistics
Matches: 407, Mismatches: 47, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
23 15 0.04
24 3 0.01
25 2 0.00
26 4 0.01
27 382 0.94
28 1 0.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (27 bp):
GGGTAAAATAGTAATTTTGTAAATCGA
Found at i:101581613 original size:27 final size:26
Alignment explanation
Indices: 101581539--101581660 Score: 84
Period size: 27 Copynumber: 4.5 Consensus size: 26
101581529 TAATTCTGTA
*** **
101581539 AATCGAGGGTAAAATAGTAATTTTGT
1 AATCGAGGGTATTTTAGTAATTTTAC
*
101581565 AATTCGAGGGTACTTT-GATAATTTTAC
1 AA-TCGAGGGTATTTTAG-TAATTTTAC
*
101581592 AAGTCGAGGGTATTTTAGTAATTTTGC
1 AA-TCGAGGGTATTTTAGTAATTTTAC
* ** *
101581619 AAACTGAGGGTATTTCGGTAGTTTTAC
1 AATC-GAGGGTATTTTAGTAATTTTAC
*
101581646 AAATCGAGGATATTT
1 -AATCGAGGGTATTT
101581661 GGGTAACTTT
Statistics
Matches: 76, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
26 4 0.05
27 68 0.89
28 4 0.05
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (26 bp):
AATCGAGGGTATTTTAGTAATTTTAC
Found at i:101581614 original size:81 final size:81
Alignment explanation
Indices: 101581090--101581576 Score: 685
Period size: 81 Copynumber: 6.1 Consensus size: 81
101581080 AACACCCTAG
** * ** *
101581090 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG
1 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAG
101581155 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * *
101581171 GGGTAAAATAGTAATTTTGTAAATTGAGGGTAAAATAGTAATTCTATCAATCGAGGGTAAAATAG
1 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAG
* *
101581236 TAATTCTGTAAATTGA
66 TAATTTTGTAAATCGA
* * *
101581252 GGGTAAAACAGTAATTTTGTAAATTGAGGGT-AAA-CG--GTTCTGTAAATCGAGGGTAAAATAG
1 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAG
101581313 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * **
101581329 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATCAATCGAGGGTAAAACGG
1 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAG
* * *
101581394 TAGTTCTGTCAATCGA
66 TAATTTTGTAAATCGA
* * *
101581410 GGGTAAAACAGTAATTTTTTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGG
1 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAG
101581475 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* *
101581491 GGGTAAAACTGTAATTTTGTAAATCGAGGGTAAAATAATAATTCTGTAAATCGAGGGTAAAATAG
1 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAG
*
101581556 TAATTTTGTAATTCGA
66 TAATTTTGTAAATCGA
101581572 GGGTA
1 GGGTA
101581577 CTTTGATAAT
Statistics
Matches: 359, Mismatches: 43, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
77 65 0.18
78 3 0.01
79 2 0.01
80 3 0.01
81 286 0.80
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (81 bp):
GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATAG
TAATTTTGTAAATCGA
Found at i:101581665 original size:27 final size:27
Alignment explanation
Indices: 101581568--101581722 Score: 104
Period size: 27 Copynumber: 5.8 Consensus size: 27
101581558 ATTTTGTAAT
* *
101581568 TCGAGGGTACTTT-GATAATTTTACAAG
1 TCGAGGGTA-TTTCGGTAATTTTACAAA
** *
101581595 TCGAGGGTATTTTAGTAATTTTGCAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
*
101581622 -CTGAGGGTATTTCGGTAGTTTTACAAA
1 TC-GAGGGTATTTCGGTAATTTTACAAA
* * * *
101581649 TCGAGGATATTTGGGTAACTTTAGAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
* * *
101581676 CCG-GGGTTACTTT-GGTAATTTTATAAC
1 TCGAGGG-TA-TTTCGGTAATTTTACAAA
* *
101581703 T-GGGGGTATTTCAGTAATTT
1 TCGAGGGTATTTCGGTAATTT
101581723 GGTAAACTAA
Statistics
Matches: 101, Mismatches: 20, Indels: 15
0.74 0.15 0.11
Matches are distributed among these distances:
25 3 0.03
26 16 0.16
27 78 0.77
28 4 0.04
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.39
Consensus pattern (27 bp):
TCGAGGGTATTTCGGTAATTTTACAAA
Found at i:101581698 original size:54 final size:54
Alignment explanation
Indices: 101581569--101581698 Score: 140
Period size: 54 Copynumber: 2.4 Consensus size: 54
101581559 TTTTGTAATT
* * * * *
101581569 CGAGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTTAGTAATTTTGCAAAC
1 CGAGGGTACTTTGGTAATTTTACAAATCGAGGATATTTGAGTAATTTAGCAAAC
* * *
101581623 TGAGGGTA-TTTCGGTAGTTTTACAAATCGAGGATATTTGGGTAACTTTAG-AAAC
1 CGAGGGTACTTT-GGTAATTTTACAAATCGAGGATATTTGAGTAA-TTTAGCAAAC
101581677 CG-GGGTTACTTTGGTAATTTTA
1 CGAGGG-TACTTTGGTAATTTTA
101581699 TAACTGGGGG
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
53 6 0.10
54 49 0.79
55 7 0.11
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.38
Consensus pattern (54 bp):
CGAGGGTACTTTGGTAATTTTACAAATCGAGGATATTTGAGTAATTTAGCAAAC
Found at i:101583817 original size:25 final size:25
Alignment explanation
Indices: 101583778--101583834 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
101583768 GTAAGGAGGG
101583778 GATAA-GGGAGAAGATTTAGGAGAT
1 GATAAGGGGAGAAGATTTAGGAGAT
*
101583802 GATAAGGGGAGAAGATTTAGGAGCT
1 GATAAGGGGAGAAGATTTAGGAGAT
101583827 GATCAAGG
1 GAT-AAGG
101583835 AGCAAGAGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 5 0.17
25 21 0.70
26 4 0.13
ACGTcount: A:0.39, C:0.04, G:0.39, T:0.19
Consensus pattern (25 bp):
GATAAGGGGAGAAGATTTAGGAGAT
Found at i:101585749 original size:29 final size:27
Alignment explanation
Indices: 101585715--101585817 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
101585705 TACTCAATCA
*
101585715 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
101585744 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
101585773 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
101585802 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
101585818 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:101588546 original size:54 final size:53
Alignment explanation
Indices: 101588462--101588572 Score: 141
Period size: 54 Copynumber: 2.1 Consensus size: 53
101588452 AGGAAGCCTC
* *
101588462 CTGGTGGCTATGCCACAACTATCTGATCTGGTGGCTCTACCACATATATTTGTT
1 CTGGTGGCTATGCCACAACTATCTGATCTGGTGACTCTACCACAT-TATCTGTT
* * * * **
101588516 CTGGTGGCTCTGTCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAACTATCTGATCTGGTGACTCTACCACATTATCTGTT
101588569 CTGG
1 CTGG
101588573 CAGTTGTGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 11 0.22
54 38 0.78
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAACTATCTGATCTGGTGACTCTACCACATTATCTGTT
Found at i:101588569 original size:26 final size:26
Alignment explanation
Indices: 101588462--101588572 Score: 123
Period size: 27 Copynumber: 4.2 Consensus size: 26
101588452 AGGAAGCCTC
* * * *
101588462 CTGGTGGCTATGCCACAACTATCTGAT
1 CTGGTGGCTCTGTCAC-ATTATCTGTT
** *
101588489 CTGGTGGCTCTACCACATATATTTGTT
1 CTGGTGGCTCTGTCACAT-TATCTGTT
101588516 CTGGTGGCTCTGTCACAATTATCTGTT
1 CTGGTGGCTCTGTCAC-ATTATCTGTT
*
101588543 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGTCACATTATCTGTT
101588569 CTGG
1 CTGG
101588573 CAGTTGTGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 15 0.21
27 56 0.77
28 2 0.03
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGTCACATTATCTGTT
Found at i:101590554 original size:41 final size:40
Alignment explanation
Indices: 101590498--101590670 Score: 188
Period size: 40 Copynumber: 4.3 Consensus size: 40
101590488 TGAATGGTAT
* * * *
101590498 CGGGCTAAGCCCCGAAGGCTTTTGTGCTAAGTGACTAAAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAAC
* *
101590539 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAAC
* * *
101590579 CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACT-AAAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAAC
* * * * *
101590618 CGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAAC
101590658 CGGGC-AATGTCCC
1 CGGGCTAA-GTCCC
101590671 AAAGACAATC
Statistics
Matches: 112, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 34 0.30
40 54 0.48
41 24 0.21
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAAC
Found at i:101590643 original size:79 final size:81
Alignment explanation
Indices: 101590498--101590646 Score: 194
Period size: 79 Copynumber: 1.9 Consensus size: 81
101590488 TGAATGGTAT
* * * *
101590498 CGGGCTAAGCCCCGAAGGCTTTTGTGCTAAGTGACTAAAACCGGGTTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGCCCCGAAGGCATTCGTGCTAAGTGACTAAAACCGGGCTAAGTCCCGAAGGCAATTG
101590563 TGCGAGTTACCAAAAC
66 TGCGAGTTACCAAAAC
* * * * * *
101590579 CGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACT-AAATCGGGCTAATTCCCGAAGGCAATTG
1 CGGGCTAAGCCCCGAAGGCATTCGTGCTAAGTGACTAAAACCGGGCTAAGTCCCGAAGGCAATTG
101590642 TGCGA
66 TGCGA
101590647 ATCACTATAA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
79 29 0.50
80 6 0.10
81 23 0.40
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (81 bp):
CGGGCTAAGCCCCGAAGGCATTCGTGCTAAGTGACTAAAACCGGGCTAAGTCCCGAAGGCAATTG
TGCGAGTTACCAAAAC
Found at i:101590670 original size:79 final size:79
Alignment explanation
Indices: 101590539--101590688 Score: 176
Period size: 79 Copynumber: 1.9 Consensus size: 79
101590529 TGACTAAAAC
* * * * * * * * *
101590539 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGT
1 CGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCAAAGACAATCGA
101590604 GCGAGTTACTAAAT
66 GCGAGTTACTAAAT
* * *
101590618 CGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCAAAGACAATCG
1 CGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAA-GTCCCAAAGACAATCG
101590682 AGCGAGT
65 AGCGAGT
101590689 CGCTATATCC
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
78 2 0.03
79 56 0.97
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCAAAGACAATCGA
GCGAGTTACTAAAT
Found at i:101598197 original size:25 final size:25
Alignment explanation
Indices: 101598137--101598190 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
101598127 AGGAGGAGAT
101598137 AAGGGAGAAGATTTACAAGCTGATA
1 AAGGGAGAAGATTTACAAGCTGATA
** *
101598162 AAGGGAGAAGATTTAGGAGCTGATC
1 AAGGGAGAAGATTTACAAGCTGATA
101598187 AAGG
1 AAGG
101598191 AGCAAGAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.33, T:0.19
Consensus pattern (25 bp):
AAGGGAGAAGATTTACAAGCTGATA
Found at i:101599614 original size:54 final size:53
Alignment explanation
Indices: 101599530--101599640 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 53
101599520 AGGAAGCGTC
* * *
101599530 CTGGTGGCTATGCCACAACTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATACCACAACTATCTGATCTGGTGACTCTACCACAT-TATCTGTT
* * * *
101599584 CTGGTGGCTCTACCACAATTATCTGTTCTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTATACCACAACTATCTGATCTGGTGACTCTACCACATTATCTGTT
101599637 CTGG
1 CTGG
101599641 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 12 0.24
54 38 0.76
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATACCACAACTATCTGATCTGGTGACTCTACCACATTATCTGTT
Found at i:101599637 original size:26 final size:26
Alignment explanation
Indices: 101599530--101599640 Score: 132
Period size: 27 Copynumber: 4.2 Consensus size: 26
101599520 AGGAAGCGTC
* * * *
101599530 CTGGTGGCTATGCCACAACTATCTGAT
1 CTGGTGGCTCTACCAC-ATTATCTGTT
*
101599557 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTACCACAT-TATCTGTT
101599584 CTGGTGGCTCTACCACAATTATCTGTT
1 CTGGTGGCTCTACCAC-ATTATCTGTT
* *
101599611 CTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTCTACCACATTATCTGTT
101599637 CTGG
1 CTGG
101599641 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 15 0.20
27 59 0.78
28 2 0.03
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTACCACATTATCTGTT
Found at i:101602035 original size:40 final size:40
Alignment explanation
Indices: 101601977--101602207 Score: 172
Period size: 40 Copynumber: 5.8 Consensus size: 40
101601967 GGATATAGCG
* * * *
101601977 ACTCGCTCGATTGTCTTCGGGACATT-GCCCGGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATTAGCCCGGTT-TAGTA
*
101602017 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAGTA
1 ACTCGCACAATTGCCTTCGGGACATTAGCCCGG-TTTAGTA
* * *
101602057 ACTCGCACGAA-TGCCTTCGGGAC-TTAACCCGATTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATTAGCCCG-GTTTAGTA
* * * *
101602097 ACTCGCACAAATGCCTTCGGGAC-TTAACACGGTTTTGGTA
1 ACTCGCACAATTGCCTTCGGGACATTAGCCCGG-TTTAGTA
* * *
101602137 ACTAGCACAAATGCCTTCGGGA-ATT-GACCCGGATTTAGTC
1 ACTCGCACAATTGCCTTCGGGACATTAG-CCCGG-TTTAGTA
* **
101602177 ACTAAGCACAAAAGCCTTCGGGAC-TTAGCCC
1 ACT-CGCACAATTGCCTTCGGGACATTAGCCC
101602208 AGACACCATT
Statistics
Matches: 161, Mismatches: 18, Indels: 23
0.80 0.09 0.11
Matches are distributed among these distances:
39 5 0.03
40 128 0.80
41 27 0.17
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
ACTCGCACAATTGCCTTCGGGACATTAGCCCGGTTTAGTA
Found at i:101602103 original size:80 final size:80
Alignment explanation
Indices: 101602019--101602207 Score: 227
Period size: 80 Copynumber: 2.4 Consensus size: 80
101602009 TTATAGTGAT
* * * * *
101602019 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAA
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCACAAATGCCTTCGGGAATTAA
*
101602084 CCC-GATTTTGGTAAC
66 CCCGGA-TTTAGTAAC
* * * * *
101602099 TCGCACAAATGCCTTCGGGACTTAACACGGTTTTGGTAACTAGCACAAATGCCTTCGGGAATTGA
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCACAAATGCCTTCGGGAATTAA
*
101602164 CCCGGATTTAGTCAC
66 CCCGGATTTAGTAAC
* *
101602179 TAAGCACAAAAGCCTTCGGGACTTAGCCC
1 T-CGCACAAATGCCTTCGGGACTTAGCCC
101602208 AGACACCATT
Statistics
Matches: 91, Mismatches: 16, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
80 66 0.73
81 25 0.27
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCACAAATGCCTTCGGGAATTAA
CCCGGATTTAGTAAC
Found at i:101606628 original size:40 final size:40
Alignment explanation
Indices: 101606573--101606782 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
101606563 AACATTGGAA
101606573 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
101606613 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
101606653 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
101606693 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
101606732 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
101606773 CTATATCCGG
1 ATATATCCGG
101606783 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:101614489 original size:64 final size:64
Alignment explanation
Indices: 101614411--101614540 Score: 260
Period size: 64 Copynumber: 2.0 Consensus size: 64
101614401 TAATTTAATA
101614411 TTTATGAGTCAAGTAAGAATTTAGAAGAATTTGTGAAATGGTGAAATTAGTGAATTAAAAGAAT
1 TTTATGAGTCAAGTAAGAATTTAGAAGAATTTGTGAAATGGTGAAATTAGTGAATTAAAAGAAT
101614475 TTTATGAGTCAAGTAAGAATTTAGAAGAATTTGTGAAATGGTGAAATTAGTGAATTAAAAGAAT
1 TTTATGAGTCAAGTAAGAATTTAGAAGAATTTGTGAAATGGTGAAATTAGTGAATTAAAAGAAT
101614539 TT
1 TT
101614541 ATTAGGTCAA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.43, C:0.02, G:0.22, T:0.34
Consensus pattern (64 bp):
TTTATGAGTCAAGTAAGAATTTAGAAGAATTTGTGAAATGGTGAAATTAGTGAATTAAAAGAAT
Found at i:101614503 original size:30 final size:30
Alignment explanation
Indices: 101614411--101614506 Score: 88
Period size: 30 Copynumber: 3.1 Consensus size: 30
101614401 TAATTTAATA
101614411 TTTATGAGTCAAGTAAGAATTTAGAAGAAT
1 TTTATGAGTCAAGTAAGAATTTAGAAGAAT
* * * *
101614441 TTGTGAAATG-GTGAAATTAGTGAA-TTAAAAGAAT
1 TT-T---ATGAGT-CAAGTA-AGAATTTAGAAGAAT
101614475 TTTATGAGTCAAGTAAGAATTTAGAAGAAT
1 TTTATGAGTCAAGTAAGAATTTAGAAGAAT
101614505 TT
1 TT
101614507 GTGAAATGGT
Statistics
Matches: 50, Mismatches: 8, Indels: 16
0.68 0.11 0.22
Matches are distributed among these distances:
29 3 0.06
30 20 0.40
31 3 0.06
33 3 0.06
34 18 0.36
35 3 0.06
ACGTcount: A:0.43, C:0.02, G:0.21, T:0.34
Consensus pattern (30 bp):
TTTATGAGTCAAGTAAGAATTTAGAAGAAT
Found at i:101616548 original size:39 final size:40
Alignment explanation
Indices: 101616370--101616552 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
101616360 CCGCACCAAG
* * * * * * * *
101616370 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
101616410 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
101616450 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
101616490 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
101616529 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
101616553 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:101624615 original size:40 final size:40
Alignment explanation
Indices: 101624487--101624638 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
101624477 ATCACGATTT
* * * * *
101624487 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
101624527 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
101624567 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
101624607 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
101624639 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:101627283 original size:40 final size:35
Alignment explanation
Indices: 101627133--101627262 Score: 242
Period size: 35 Copynumber: 3.7 Consensus size: 35
101627123 CATGGAAAAG
* *
101627133 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
101627168 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
101627203 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
101627238 TGTGAAATGTAGGTATGGTATTATC
1 TGTGAAATGTAGGTATGGTATTATC
101627263 AAATCCATAC
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 93 1.00
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.35
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
Found at i:101645371 original size:29 final size:28
Alignment explanation
Indices: 101645279--101645381 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 28
101645269 TACTCAATCA
* *
101645279 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATA-CATTCAAGCT
* * * *
101645308 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATACA-TTCAAGCT
*
101645337 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATACATT-CAAGCT
* *
101645366 CACACACTCAGTGCCA
1 CGCACACTTAGTGCCA
101645382 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
28 2 0.03
29 57 0.97
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATACATTCAAGCT
Found at i:101647407 original size:31 final size:28
Alignment explanation
Indices: 101647351--101647407 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 28
101647341 ATTATTTTAT
*
101647351 TTATATAATTAAAATATTAAATATATAA
1 TTATATAATAAAAATATTAAATATATAA
101647379 TTATATAATAAAAGATATATAAAATATAT
1 TTATATAATAAAA-ATAT-T-AAATATAT
101647408 TTCATTATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 12 0.48
29 4 0.16
30 1 0.04
31 8 0.32
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (28 bp):
TTATATAATAAAAATATTAAATATATAA
Found at i:101651454 original size:40 final size:39
Alignment explanation
Indices: 101651390--101651588 Score: 191
Period size: 40 Copynumber: 5.0 Consensus size: 39
101651380 TTATTGAATG
101651390 ATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTA
1 ATTGCACATACGTG-CCCTGTTTGTACTTCGGTACCCCTA
* * * *
101651430 ATTGCACATACGTGCTCCTATTTGTACATCGATACCCCTG
1 ATTGCACATACGTGC-CCTGTTTGTACTTCGGTACCCCTA
* * * * * * *
101651470 TTTGCACATACATACCATGGTTTGTACTTTGATACCCCTG
1 ATTGCACATACGTGCCCT-GTTTGTACTTCGGTACCCCTA
* * * *
101651510 TTTCCACATATGTGCCCCTGTTTGTACTTCAGTACCCCTA
1 ATTGCACATACGTG-CCCTGTTTGTACTTCGGTACCCCTA
* * *
101651550 ATTGTACATATGTGCCCATGCTTGTACTTCGGTACCCCT
1 ATTGCACATACGTGCCC-TGTTTGTACTTCGGTACCCCT
101651589 GAACGCATTT
Statistics
Matches: 130, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 6 0.05
40 121 0.93
41 3 0.02
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.35
Consensus pattern (39 bp):
ATTGCACATACGTGCCCTGTTTGTACTTCGGTACCCCTA
Found at i:101651458 original size:20 final size:20
Alignment explanation
Indices: 101651395--101651480 Score: 59
Period size: 20 Copynumber: 4.3 Consensus size: 20
101651385 GAATGATTGC
*
101651395 ACATACGTGCCCCTGTTTGT
1 ACATACGTGCCCCTATTTGT
* * * *
101651415 AC-TTCGGTACCCCTAATTGC
1 ACATAC-GTGCCCCTATTTGT
*
101651435 ACATACGTGCTCCTATTTGT
1 ACATACGTGCCCCTATTTGT
* * *
101651455 ACAT-CGATACCCCTGTTTGC
1 ACATACG-TGCCCCTATTTGT
101651475 ACATAC
1 ACATAC
101651481 ATACCATGGT
Statistics
Matches: 48, Mismatches: 14, Indels: 7
0.70 0.20 0.10
Matches are distributed among these distances:
19 4 0.08
20 41 0.85
21 3 0.06
ACGTcount: A:0.21, C:0.31, G:0.15, T:0.33
Consensus pattern (20 bp):
ACATACGTGCCCCTATTTGT
Found at i:101651547 original size:20 final size:20
Alignment explanation
Indices: 101651524--101651590 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 20
101651514 CACATATGTG
*
101651524 CCCCTGTTTGTACTTCAGTA
1 CCCCTGATTGTACTTCAGTA
* * *
101651544 CCCCTAATTGTACAT-ATGTG
1 CCCCTGATTGTACTTCA-GTA
* * *
101651564 CCCATGCTTGTACTTCGGTA
1 CCCCTGATTGTACTTCAGTA
101651584 CCCCTGA
1 CCCCTGA
101651591 ACGCATTTAC
Statistics
Matches: 33, Mismatches: 12, Indels: 4
0.67 0.24 0.08
Matches are distributed among these distances:
19 1 0.03
20 32 0.97
ACGTcount: A:0.18, C:0.31, G:0.16, T:0.34
Consensus pattern (20 bp):
CCCCTGATTGTACTTCAGTA
Found at i:101654372 original size:31 final size:31
Alignment explanation
Indices: 101654331--101654392 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
101654321 CAAATAGCCT
* * *
101654331 AAAAGTTAGTGGATTTAATCATGCCACCACC
1 AAAAGGTAGTGAATTGAATCATGCCACCACC
101654362 AAAAGGTAGTGAATTGAATCATGCCACCACC
1 AAAAGGTAGTGAATTGAATCATGCCACCACC
101654393 GCTTGGACCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.23
Consensus pattern (31 bp):
AAAAGGTAGTGAATTGAATCATGCCACCACC
Found at i:101656757 original size:15 final size:15
Alignment explanation
Indices: 101656717--101656760 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
101656707 TTATCTTAAA
101656717 ATATGAATATGTGTGT
1 ATATG-ATATGTGTGT
* *
101656733 ATTGTGATATGTGTTT
1 A-TATGATATGTGTGT
101656749 ATATGATATGTG
1 ATATGATATGTG
101656761 ACTATTATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 10 0.42
16 11 0.46
17 3 0.12
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (15 bp):
ATATGATATGTGTGT
Found at i:101675211 original size:20 final size:19
Alignment explanation
Indices: 101675186--101675229 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
101675176 CGAAAAATGA
101675186 TTTCTGCAAAATGATTTACT
1 TTTCTG-AAAATGATTTACT
*
101675206 TTTCTGGAAATGATTTACT
1 TTTCTGAAAATGATTTACT
101675225 TTTCT
1 TTTCT
101675230 AGTGTTTGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.25, C:0.14, G:0.11, T:0.50
Consensus pattern (19 bp):
TTTCTGAAAATGATTTACT
Found at i:101676455 original size:15 final size:15
Alignment explanation
Indices: 101676435--101676465 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
101676425 GCCCAAACCT
101676435 TGTTGGAAAACCAGC
1 TGTTGGAAAACCAGC
*
101676450 TGTTGGAAAGCCAGC
1 TGTTGGAAAACCAGC
101676465 T
1 T
101676466 ACCCAAACCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (15 bp):
TGTTGGAAAACCAGC
Found at i:101678409 original size:29 final size:29
Alignment explanation
Indices: 101678343--101678461 Score: 138
Period size: 29 Copynumber: 4.2 Consensus size: 29
101678333 TACATACATG
*
101678343 CATATGGCCCACTAGGCCC-AATCTTATT
1 CATATGGCCCACTAGGCCCAAATCATATT
**
101678371 CATATGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCA-CTAGGCCCAAATCATATT
* *
101678400 CTTATGGCCCACTAGGCCC-AATACACATT
1 CATATGGCCCACTAGGCCCAAAT-CATATT
*
101678429 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCACTAGGCCCAAATCATATT
101678458 -ATAT
1 CATAT
101678462 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 10, Indels: 10
0.79 0.10 0.10
Matches are distributed among these distances:
28 23 0.30
29 50 0.66
30 3 0.04
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAAATCATATT
Found at i:101678447 original size:58 final size:57
Alignment explanation
Indices: 101678345--101678457 Score: 165
Period size: 58 Copynumber: 2.0 Consensus size: 57
101678335 CATACATGCA
** **
101678345 TATGGCCCACTAGGCCCAATCTTATTCATATGGCCCATCTGGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCACATTCATATGGCCCATCTGGCCCAAATCATATTCT
101678402 TATGGCCCACTAGGCCCAATACACATTCATATGGCCCAT-TAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAAT-CACATTCATATGGCCCATCT-GGCCCAAATCATATT
101678458 ATATTCATGC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
57 21 0.42
58 29 0.58
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCACATTCATATGGCCCATCTGGCCCAAATCATATTCT
Found at i:101678702 original size:24 final size:24
Alignment explanation
Indices: 101678668--101678722 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
101678658 TACCGTAGCC
*
101678668 CAAC-TTTCAGCTTTTTGGCATTT
1 CAACTTTTCAGCTTTTCGGCATTT
*
101678691 CAACTTTTCAGCTTTTCGGTATTT
1 CAACTTTTCAGCTTTTCGGCATTT
*
101678715 CGACTTTT
1 CAACTTTT
101678723 GCCATTTCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 4 0.14
24 24 0.86
ACGTcount: A:0.16, C:0.22, G:0.13, T:0.49
Consensus pattern (24 bp):
CAACTTTTCAGCTTTTCGGCATTT
Found at i:101682574 original size:45 final size:45
Alignment explanation
Indices: 101682523--101682678 Score: 181
Period size: 45 Copynumber: 3.4 Consensus size: 45
101682513 TTTGTGTGTG
*
101682523 TATTTGAAATAATTATTTAAAATATTTCACATATAATAATAGTGA
1 TATTTGAAATAATTATTTAAAATATTTCACATATAATAATAATGA
* * * * *
101682568 TATTTGAAATAGTTAATTGAAATATTTCACATATAAAAATAATGG
1 TATTTGAAATAATTATTTAAAATATTTCACATATAATAATAATGA
101682613 TATTT-AGAATAATTATTTAAAATATTAT-ACATATAAAAATAATAATGA
1 TATTTGA-AATAATTATTTAAAATATT-TCACATAT---AATAATAATGA
* *
101682661 CATTCGAAATAATTATTT
1 TATTTGAAATAATTATTT
101682679 GATTTTATAA
Statistics
Matches: 92, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
44 1 0.01
45 66 0.72
46 1 0.01
48 23 0.25
49 1 0.01
ACGTcount: A:0.48, C:0.04, G:0.07, T:0.40
Consensus pattern (45 bp):
TATTTGAAATAATTATTTAAAATATTTCACATATAATAATAATGA
Found at i:101683144 original size:77 final size:78
Alignment explanation
Indices: 101683051--101683202 Score: 252
Period size: 78 Copynumber: 2.0 Consensus size: 78
101683041 AAAATAGTGC
* * *
101683051 TTAAGATAGGAATCAAAC-TTGAGATGAAAATAGTAATACGTGACCATCTCATTAAGAGGGTTGA
1 TTAAGATAGGAATCAAACTTTGAGATAAAAATAATAATACGTGACCATCTCATTAAGAGAGTTGA
101683115 CATGTCAAAAGAA
66 CATGTCAAAAGAA
* *
101683128 TTAAGATAGGATTCAAACTTTGAGATAAAAATAATAATACGTGACCATCTCATTACGAGAGTTGA
1 TTAAGATAGGAATCAAACTTTGAGATAAAAATAATAATACGTGACCATCTCATTAAGAGAGTTGA
101683193 CATGTCAAAA
66 CATGTCAAAA
101683203 AAAAGTATCT
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
77 17 0.25
78 52 0.75
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.26
Consensus pattern (78 bp):
TTAAGATAGGAATCAAACTTTGAGATAAAAATAATAATACGTGACCATCTCATTAAGAGAGTTGA
CATGTCAAAAGAA
Found at i:101684381 original size:3 final size:3
Alignment explanation
Indices: 101684367--101684398 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
101684357 CCAAGAAGCA
*
101684367 GAT GAC GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
101684399 AGTTTCAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.03, G:0.34, T:0.28
Consensus pattern (3 bp):
GAT
Found at i:101685494 original size:3 final size:3
Alignment explanation
Indices: 101685486--101685525 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
101685476 CTTGTACATA
* * *
101685486 AAT AAT AAT AAT AAT AAC AAT AGT AAT AAT AAT CAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
101685526 CTGCACTTCA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:101692934 original size:15 final size:15
Alignment explanation
Indices: 101692914--101692943 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
101692904 GAGTCCTAAG
*
101692914 AAAATAGAATTAGAA
1 AAAATAGAAATAGAA
101692929 AAAATAGAAATAGAA
1 AAAATAGAAATAGAA
101692944 TTTTTAGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (15 bp):
AAAATAGAAATAGAA
Done.