Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 325 of 433
Found at i:101694922 original size:14 final size:14
Alignment explanation
Indices: 101694903--101694936 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
101694893 TATCCTCTCC
*
101694903 TTGTAAACTTTCTT
1 TTGTAAACTTTCCT
*
101694917 TTGTAAAGTTTCCT
1 TTGTAAACTTTCCT
101694931 TTGTAA
1 TTGTAA
101694937 TAATATAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (14 bp):
TTGTAAACTTTCCT
Found at i:101696721 original size:19 final size:19
Alignment explanation
Indices: 101696697--101696775 Score: 108
Period size: 19 Copynumber: 4.2 Consensus size: 19
101696687 AATCTTTAAG
101696697 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
101696716 GATATGCAATATTAAATAT
1 GATATGCAATCTTAGATAT
101696735 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
101696752 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
101696773 GAT
1 GAT
101696776 CTTGTAATCT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
17 15 0.29
19 28 0.54
21 9 0.17
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:101696743 original size:36 final size:38
Alignment explanation
Indices: 101696703--101696775 Score: 123
Period size: 36 Copynumber: 2.0 Consensus size: 38
101696693 TAAGGATATG
101696703 CAATCTTAGATATGATATGCAATATT-AA-ATATGATA
1 CAATCTTAGATATGATATGCAATATTGAAGATATGATA
*
101696739 CAATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 CAATCTTAGATATGATATGCAATATTGAAGATATGAT
101696776 CTTGTAATCT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 25 0.74
37 2 0.06
38 7 0.21
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.36
Consensus pattern (38 bp):
CAATCTTAGATATGATATGCAATATTGAAGATATGATA
Found at i:101697342 original size:26 final size:26
Alignment explanation
Indices: 101697289--101697339 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
101697279 AGTTTCATTT
*
101697289 TTTTATATGCTATGTTTAATTATTTA
1 TTTTATATGCTATGTTTAATTATATA
*
101697315 TTTTATATGCTAT-TTT-ATGATATA
1 TTTTATATGCTATGTTTAATTATATA
101697339 T
1 T
101697340 ATTGTTGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.27, C:0.04, G:0.08, T:0.61
Consensus pattern (26 bp):
TTTTATATGCTATGTTTAATTATATA
Found at i:101700910 original size:18 final size:18
Alignment explanation
Indices: 101700871--101700905 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
101700861 TAATAGAGGC
101700871 AAAA-GTGTAATTTTGTG
1 AAAATGTGTAATTTTGTG
101700888 AAAATGTGTAAATTTTGT
1 AAAATGTGT-AATTTTGT
101700906 TAAATTGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 4 0.25
19 8 0.50
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (18 bp):
AAAATGTGTAATTTTGTG
Found at i:101701217 original size:40 final size:40
Alignment explanation
Indices: 101701139--101701225 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
101701129 TGATGACATA
* *
101701139 TCAGCTAAATATGGCACTTAGTGTGCGGTTCGGTATAGCT
1 TCAGCTAAATATGGCACTTAATGTGCGATTCGGTATAGCT
* * *
101701179 TCGGCTAAATTTGGCACTTAATGTGCGATTTGAG-ATAGCT
1 TCAGCTAAATATGGCACTTAATGTGCGATTCG-GTATAGCT
101701219 TCAGCTA
1 TCAGCTA
101701226 TGTACAGCAC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
40 39 0.98
41 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.33
Consensus pattern (40 bp):
TCAGCTAAATATGGCACTTAATGTGCGATTCGGTATAGCT
Found at i:101704051 original size:56 final size:56
Alignment explanation
Indices: 101703978--101704091 Score: 228
Period size: 56 Copynumber: 2.0 Consensus size: 56
101703968 GAGGGATACT
101703978 TAGGAAATCATATTCACATAACAGGGTGCTAATGCTGTATCCCGAATATGATCTTA
1 TAGGAAATCATATTCACATAACAGGGTGCTAATGCTGTATCCCGAATATGATCTTA
101704034 TAGGAAATCATATTCACATAACAGGGTGCTAATGCTGTATCCCGAATATGATCTTA
1 TAGGAAATCATATTCACATAACAGGGTGCTAATGCTGTATCCCGAATATGATCTTA
101704090 TA
1 TA
101704092 TGAGACCACT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.31
Consensus pattern (56 bp):
TAGGAAATCATATTCACATAACAGGGTGCTAATGCTGTATCCCGAATATGATCTTA
Found at i:101704264 original size:48 final size:48
Alignment explanation
Indices: 101704194--101704336 Score: 187
Period size: 48 Copynumber: 3.0 Consensus size: 48
101704184 ACGATGTTTT
* *
101704194 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
1 CATAACGATGCAAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* *
101704242 CATAACGATGTAAATGTCATGTCCCAGACATGGTCTTACATGGGATCA
1 CATAACGATGCAAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
* ** * * * *
101704290 CATATCGATGCCGATGCCATATCCCAGATATGGTCTTATACGGGATC
1 CATAACGATGCAAATGCCATGTCCCAGACATGGTCTTACATGGGATC
101704337 TCATCAACCC
Statistics
Matches: 82, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 82 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (48 bp):
CATAACGATGCAAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
Found at i:101707944 original size:46 final size:44
Alignment explanation
Indices: 101707860--101707947 Score: 106
Period size: 45 Copynumber: 2.0 Consensus size: 44
101707850 GATGTAAGCA
*
101707860 AGTGTAAAACATGTCTAGGACATGCATCGACTATGAGATGTGTC
1 AGTGTAAAACATGTCTAGGACATGCATCGACTAAGAGATGTGTC
* * *
101707904 AGTGTAAGACCATGTTTAGGACATGGCATCGGC-AGAGAGATGTG
1 AGTGTAA-AACATGTCTAGGACAT-GCATCGACTA-AGAGATGTG
101707948 AGAGCCAGTG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
44 7 0.19
45 15 0.41
46 15 0.41
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.25
Consensus pattern (44 bp):
AGTGTAAAACATGTCTAGGACATGCATCGACTAAGAGATGTGTC
Found at i:101708018 original size:49 final size:47
Alignment explanation
Indices: 101707956--101708079 Score: 144
Period size: 47 Copynumber: 2.6 Consensus size: 47
101707946 TGAGAGCCAG
* * * *
101707956 TGTAAGACCATGTCTGGGACAAGGCGTCGGCCTTGATTTTGAT-AG-TCAA
1 TGTAAGACCATGTCTGGGACAAGGCATC-GACTT-ACTGT-ATGAGCT-AA
*
101708005 TGTAAGACCATGTCTGGGACATGGCATCGACTTACTGTATGAGCTAA
1 TGTAAGACCATGTCTGGGACAAGGCATCGACTTACTGTATGAGCTAA
*
101708052 TGTAAGACCATGTCTGGGACATGGCATC
1 TGTAAGACCATGTCTGGGACAAGGCATC
101708080 AACATTACAC
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
46 2 0.03
47 35 0.51
48 5 0.07
49 26 0.38
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACAAGGCATCGACTTACTGTATGAGCTAA
Found at i:101710476 original size:40 final size:40
Alignment explanation
Indices: 101710386--101710570 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
101710376 TCGAATGATG
* * *
101710386 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
**
101710425 ATCCGAACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
101710466 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
101710505 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
101710544 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
101710571 AATGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:101710592 original size:79 final size:79
Alignment explanation
Indices: 101710439--101710603 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
101710429 GAACTAAGAT
* **
101710439 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
* *
101710504 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* * *
101710518 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
101710581 TATATC-CGGTTAAATT
63 TAAATCTCGGTTAAATC
101710597 CCGAAGG
1 CCGAAGG
101710604 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.67
80 22 0.30
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCTCGGTTAAATC
Found at i:101713680 original size:37 final size:37
Alignment explanation
Indices: 101713627--101713717 Score: 137
Period size: 37 Copynumber: 2.4 Consensus size: 37
101713617 TATAAAAGAA
*
101713627 GTCTTACCTGGACATAATCTCCACACATAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACATAGTCATCGG
* *
101713664 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACATAGTCATCGG
*
101713701 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
101713718 TTCCAAGTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
37 44 0.92
38 4 0.08
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACATAGTCATCGG
Found at i:101713868 original size:49 final size:49
Alignment explanation
Indices: 101713813--101714291 Score: 561
Period size: 49 Copynumber: 9.4 Consensus size: 49
101713803 TTTTACATTA
101713813 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
101713862 GCCATTAGGCCTTATCACATATACGTACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
101713911 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * *
101713960 GCCATTAGGCCTTATGTGTCGGCCAT-TAGGCCTCATCACATAT-ACATCCACTTTCACATTCAT
1 GCCATTAGGCCTTA----TC--ACATATA--CAT-A-CAC-TTTCACATTCAC---CACAT----
101714023 CACATCG
48 -----CG
101714030 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
101714079 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
101714128 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCA-C-CATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
101714175 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * *
101714224 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCCTTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
101714273 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
101714292 CATATATGTA
Statistics
Matches: 376, Mismatches: 27, Indels: 54
0.82 0.06 0.12
Matches are distributed among these distances:
47 44 0.12
48 2 0.01
49 261 0.69
53 2 0.01
54 2 0.01
55 3 0.01
56 2 0.01
57 1 0.00
58 14 0.04
59 2 0.01
60 2 0.01
61 15 0.04
62 1 0.00
63 2 0.01
64 3 0.01
65 2 0.01
66 2 0.01
70 16 0.04
ACGTcount: A:0.28, C:0.33, G:0.10, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:101713989 original size:70 final size:70
Alignment explanation
Indices: 101713908--101714044 Score: 265
Period size: 70 Copynumber: 2.0 Consensus size: 70
101713898 ATTCACCACA
101713908 TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
101713973 ATGTG
66 ATGTG
*
101713978 TCGGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
101714043 AT
66 AT
101714045 CACATATACA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 66 1.00
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (70 bp):
TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
ATGTG
Found at i:101714070 original size:119 final size:119
Alignment explanation
Indices: 101713859--101714090 Score: 410
Period size: 119 Copynumber: 1.9 Consensus size: 119
101713849 ATTCACCACA
* *
101713859 TCGGCCATTAGGCCTTATCACATATACGTACACTTTCACATTCACCACATCGGCCATTAGGCCTC
1 TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTC
*
101713924 ATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATGTG
66 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATGTG
* * *
101713978 TCGGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTC
101714043 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCT
66 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCT
101714091 CATCACATAT
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 107 1.00
ACGTcount: A:0.27, C:0.32, G:0.12, T:0.29
Consensus pattern (119 bp):
TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTC
ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATGTG
Found at i:101714091 original size:168 final size:168
Alignment explanation
Indices: 101713813--101714142 Score: 615
Period size: 168 Copynumber: 2.0 Consensus size: 168
101713803 TTTTACATTA
*
101713813 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
*
101713878 ACATATACGTACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTT
66 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTT
101713943 TCACATTCATCACATCGGCCATTAGGCCTTATGTGTCG
131 TCACATTCATCACATCGGCCATTAGGCCTTATGTGTCG
* *
101713981 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
*
101714046 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATCCACTT
66 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTT
101714111 TCACATTCATCACATCGGCCATTAGGCCTTAT
131 TCACATTCATCACATCGGCCATTAGGCCTTAT
101714143 CACATATACA
Statistics
Matches: 157, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
168 157 1.00
ACGTcount: A:0.28, C:0.32, G:0.10, T:0.29
Consensus pattern (168 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTATGTGTCG
Found at i:101717577 original size:29 final size:29
Alignment explanation
Indices: 101717541--101717675 Score: 261
Period size: 29 Copynumber: 4.7 Consensus size: 29
101717531 TGTTGAAAAA
*
101717541 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
101717570 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
101717599 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
101717628 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
101717657 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
101717676 AATCACTCGC
Statistics
Matches: 105, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 105 1.00
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:101719819 original size:37 final size:37
Alignment explanation
Indices: 101719766--101719856 Score: 137
Period size: 37 Copynumber: 2.4 Consensus size: 37
101719756 TATAAAAGAA
*
101719766 GTCTTACCTGGACATAATCTCCACACATAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACATAGTCATCGG
* *
101719803 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACATAGTCATCGG
*
101719840 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
101719857 TTCCAAGTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
37 44 0.92
38 4 0.08
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACATAGTCATCGG
Found at i:101720007 original size:49 final size:49
Alignment explanation
Indices: 101719952--101720481 Score: 659
Period size: 49 Copynumber: 10.4 Consensus size: 49
101719942 TTTTACATTA
101719952 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
101720001 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
101720050 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
101720099 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * *
101720148 GCCATTAGGCCTTATGTGTCGGCCAT-TAGGCCTCATCACATAT-ACATCCACTTTCACATTCAT
1 GCCATTAGGCCTTA----TC--ACATATA--CAT-A-CAC-TTTCACATTCAC---CACAT----
101720211 CACATCG
48 -----CG
101720218 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * *
101720267 GCCATTTGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
101720316 GCCATTAGGCCTTATCACATATACATACACTTTCACACTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * *
101720365 ACCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
101720414 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
101720463 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
101720482 CATATATGTA
Statistics
Matches: 424, Mismatches: 32, Indels: 50
0.84 0.06 0.10
Matches are distributed among these distances:
49 355 0.84
53 2 0.00
54 2 0.00
55 3 0.01
56 2 0.00
57 1 0.00
58 14 0.03
59 2 0.00
60 2 0.00
61 15 0.04
62 1 0.00
63 2 0.00
64 3 0.01
65 2 0.00
66 2 0.00
70 16 0.04
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:101720175 original size:70 final size:70
Alignment explanation
Indices: 101720096--101720232 Score: 265
Period size: 70 Copynumber: 2.0 Consensus size: 70
101720086 ATTCACCACA
101720096 TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
101720161 ATGTG
66 ATGTG
*
101720166 TCGGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
101720231 AT
66 AT
101720233 CACATATACA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 66 1.00
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (70 bp):
TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
ATGTG
Found at i:101720191 original size:119 final size:119
Alignment explanation
Indices: 101720047--101720278 Score: 419
Period size: 119 Copynumber: 1.9 Consensus size: 119
101720037 ATTCACCACA
101720047 TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTC
1 TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTC
*
101720112 ATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATGTG
66 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATGTG
* * *
101720166 TCGGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTC
*
101720231 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTTGGCCT
66 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCT
101720279 CATCACATAT
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
119 108 1.00
ACGTcount: A:0.27, C:0.33, G:0.11, T:0.29
Consensus pattern (119 bp):
TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTC
ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATGTG
Found at i:101720280 original size:168 final size:168
Alignment explanation
Indices: 101719998--101720330 Score: 612
Period size: 168 Copynumber: 2.0 Consensus size: 168
101719988 ATTCACCACA
*
101719998 TCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTC
1 TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTC
101720063 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACA
66 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACA
101720128 CTTTCACATTCATCACATCGGCCATTAGGCCTTATGTG
131 CTTTCACATTCATCACATCGGCCATTAGGCCTTATGTG
* * *
101720166 TCGGCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTC
* *
101720231 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTTGGCCTCATCACATATACATCCA
66 ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACA
101720296 CTTTCACATTCATCACATCGGCCATTAGGCCTTAT
131 CTTTCACATTCATCACATCGGCCATTAGGCCTTAT
101720331 CACATATACA
Statistics
Matches: 159, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
168 159 1.00
ACGTcount: A:0.28, C:0.33, G:0.10, T:0.29
Consensus pattern (168 bp):
TCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTC
ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATGTG
Found at i:101720327 original size:217 final size:217
Alignment explanation
Indices: 101719952--101720376 Score: 760
Period size: 217 Copynumber: 2.0 Consensus size: 217
101719942 TTTTACATTA
*
101719952 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
101720017 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTT
66 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTT
* *
101720082 TCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATC
131 TCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACACTCACCACATC
*
101720147 GGCCATTAGGCCTTATGTGTCG
196 GACCATTAGGCCTTATGTGTCG
* *
101720169 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
* *
101720234 ACATATACATACACTTTCACATTCACCACATCGGCCATTTGGCCTCATCACATATACATCCACTT
66 ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTT
* *
101720299 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACACTCACCACATC
131 TCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACACTCACCACATC
101720364 GACCATTAGGCCT
196 GACCATTAGGCCT
101720377 CATCACATAT
Statistics
Matches: 198, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
217 198 1.00
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.28
Consensus pattern (217 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
ACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTT
TCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACACTCACCACATC
GACCATTAGGCCTTATGTGTCG
Found at i:101728035 original size:40 final size:39
Alignment explanation
Indices: 101727951--101728135 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
101727941 TCGAATGATG
* * * *
101727951 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
101727991 TCCGGACTAAGATCCGAAGGCATTTGTGAGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
101728031 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
101728070 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
101728111 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
101728136 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 33 0.27
40 80 0.66
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:101728157 original size:79 final size:79
Alignment explanation
Indices: 101728004--101728168 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
101727994 GGACTAAGAT
* **
101728004 CCGAAGGCATTTGTGAGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGAGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
* *
101728069 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* * *
101728083 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGAGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
101728146 TATATC-CGGTTAAATT
63 TAAATCTCGGTTAAATC
101728162 CCGAAGG
1 CCGAAGG
101728169 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGAGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCTCGGTTAAATC
Found at i:101737479 original size:94 final size:96
Alignment explanation
Indices: 101737345--101737600 Score: 281
Period size: 94 Copynumber: 2.7 Consensus size: 96
101737335 TATCTCGGAT
* * * * *
101737345 ATGGTCTTATATGGGACCACTTATCAATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
1 ATGGTCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
* *
101737410 CACA-CAT-AT-CGAA-GCCGATAG-CCCA-AC
66 CACATAATGATGCCAATGCC-AT-GTCCCAGAC
* * ** *
101737437 TATGGTCTTACACGATGTTCTTATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGG
1 -ATGGTCTTACACG-GGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGG
101737502 ATCACATAATGATGCCAATGCCATGTCCCAGAC
64 ATCACATAATGATGCCAATGCCATGTCCCAGAC
* * * * *
101737535 ATGGTCTTACACGGGATCACATATCGATGCCGATGCCATATCCTAGATATGGTCTTATATGGGAT
1 ATGGTCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
101737600 C
66 C
101737601 TCATCAACCC
Statistics
Matches: 134, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
93 11 0.08
94 48 0.36
95 2 0.01
96 46 0.34
97 22 0.16
98 5 0.04
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (96 bp):
ATGGTCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
CACATAATGATGCCAATGCCATGTCCCAGAC
Found at i:101737527 original size:48 final size:48
Alignment explanation
Indices: 101737345--101737600 Score: 256
Period size: 48 Copynumber: 5.4 Consensus size: 48
101737335 TATCTCGGAT
* * * *
101737345 ATGGTCTTATATGGGACCACTTATCAATGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
* *
101737393 ATGGTCTTACATGGGATCACACAT--AT-CGAA-GCCGATAG-CCCA-AC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCC-AT-GTCCCAGAC
* * * ** *
101737437 TATGGTCTTACACGATGTTCTTATATCGATGCCAATGCCATGTCCCAAAC
1 -ATGGTCTTACATG-GGATCACATATCGATGCCAATGCCATGTCCCAGAC
101737487 ATGGTCTTACATGGGATCACATAAT-GATGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGATCACAT-ATCGATGCCAATGCCATGTCCCAGAC
* * * * *
101737535 ATGGTCTTACACGGGATCACATATCGATGCCGATGCCATATCCTAGAT
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
*
101737583 ATGGTCTTATATGGGATC
1 ATGGTCTTACATGGGATC
101737601 TCATCAACCC
Statistics
Matches: 171, Mismatches: 25, Indels: 24
0.78 0.11 0.11
Matches are distributed among these distances:
44 5 0.03
45 21 0.12
46 9 0.05
47 2 0.01
48 106 0.62
49 23 0.13
50 5 0.03
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (48 bp):
ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
Found at i:101740539 original size:40 final size:40
Alignment explanation
Indices: 101740337--101740544 Score: 233
Period size: 40 Copynumber: 5.2 Consensus size: 40
101740327 TGAATGATAC
* * *
101740337 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
101740377 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
101740417 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* ** *
101740457 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * *
101740497 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
101740537 CC-GGCTAA
1 CCGGGCTAA
101740545 ATTCCGAAGA
Statistics
Matches: 145, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.04
40 137 0.94
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:101748637 original size:40 final size:40
Alignment explanation
Indices: 101748435--101748642 Score: 233
Period size: 40 Copynumber: 5.2 Consensus size: 40
101748425 TGAATGATAC
* * *
101748435 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
101748475 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
101748515 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* ** *
101748555 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * *
101748595 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
101748635 CC-GGCTAA
1 CCGGGCTAA
101748643 ATTCCGAAGA
Statistics
Matches: 145, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.04
40 137 0.94
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:101754576 original size:9 final size:9
Alignment explanation
Indices: 101754551--101754583 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
101754541 TGTTGTTAAA
101754551 GGTTAAAAT
1 GGTTAAAAT
101754560 GG-TAAAAT
1 GGTTAAAAT
101754568 GGTTAAAAT
1 GGTTAAAAT
101754577 GAGTTAA
1 G-GTTAA
101754584 TTAACTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.36
9 9 0.41
10 5 0.23
ACGTcount: A:0.45, C:0.00, G:0.24, T:0.30
Consensus pattern (9 bp):
GGTTAAAAT
Found at i:101755421 original size:40 final size:40
Alignment explanation
Indices: 101755344--101755446 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 40
101755334 ATGACATATT
*
101755344 GGCTAAATATGGCACTTAGTGTGCAGTTCGGTGTAGCTTC
1 GGCTAAATATGGCACTTAGTGTGCAGTTCGGTATAGCTTC
* *
101755384 GGCTAAATTTGGCACTTAGTGTGC-GATTTGAG-ATAGCTTC
1 GGCTAAATATGGCACTTAGTGTGCAG-TTCG-GTATAGCTTC
** **
101755424 GGCTATGTACAGCACTTAGTGTG
1 GGCTAAATATGGCACTTAGTGTG
101755447 TGGGACATCA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
39 1 0.02
40 51 0.96
41 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.33
Consensus pattern (40 bp):
GGCTAAATATGGCACTTAGTGTGCAGTTCGGTATAGCTTC
Found at i:101755491 original size:28 final size:28
Alignment explanation
Indices: 101755460--101755538 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
101755450 GACATCAAAT
101755460 ATGGCACTTAGTGTGTGAAATATTAAGA
1 ATGGCACTTAGTGTGTGAAATATTAAGA
** * *
101755488 ATGGCACTTAGTGTACGAGATATTGAGA
1 ATGGCACTTAGTGTGTGAAATATTAAGA
*
101755516 ATGCCACTTAGTGTGTGAAATAT
1 ATGGCACTTAGTGTGTGAAATAT
101755539 CGAATGATTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.32
Consensus pattern (28 bp):
ATGGCACTTAGTGTGTGAAATATTAAGA
Found at i:101763431 original size:48 final size:48
Alignment explanation
Indices: 101763317--101763565 Score: 157
Period size: 48 Copynumber: 5.4 Consensus size: 48
101763307 AGGGGCCAAA
* * * *
101763317 GCCATGTCCTAAACATGGTCTTACATGGGA-C-CATA-C-ATG--GAT
1 GCCATGTCCCAGACATGGTCTTATATGAGATCTCATATCGATGCCGAT
* * * * *
101763359 GCCATATCTCAGATATGGCCTTATATGA-AGTCTCATATCGGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTATATGAGA-TCTCATATCGATGCCGAT
* * *
101763407 GCCATGTCCCAGACATGGTCTTATACGGGACCTC--AT--AT--CGAT
1 GCCATGTCCCAGACATGGTCTTATATGAGATCTCATATCGATGCCGAT
* * * * * *
101763449 GCCATGTCCCAGACATGGTCTTACATGAAATCACTTAACGATGCCGAA
1 GCCATGTCCCAGACATGGTCTTATATGAGATCTCATATCGATGCCGAT
* * * * * * *
101763497 GCCATATCCCTGATATGGTCTTATATGGGATCTCGTCTCGATACCGAT
1 GCCATGTCCCAGACATGGTCTTATATGAGATCTCATATCGATGCCGAT
101763545 GCCATGTCCC-GAACATGGTCT
1 GCCATGTCCCAG-ACATGGTCT
101763566 CACACGGGAT
Statistics
Matches: 153, Mismatches: 39, Indels: 24
0.71 0.18 0.11
Matches are distributed among these distances:
41 1 0.01
42 52 0.34
43 1 0.01
44 6 0.04
45 1 0.01
46 6 0.04
47 1 0.01
48 84 0.55
49 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (48 bp):
GCCATGTCCCAGACATGGTCTTATATGAGATCTCATATCGATGCCGAT
Found at i:101763477 original size:90 final size:90
Alignment explanation
Indices: 101763315--101763526 Score: 228
Period size: 90 Copynumber: 2.4 Consensus size: 90
101763305 ATAGGGGCCA
* * * * * *
101763315 AAGCCATGTCCTAAACATGGTCTTACATGGGACCATACATGGATGCCATATCTCAGATATGGCCT
1 AAGCCATGTCCCAGACATGGTCTTATATGGGACCATACATCGATGCCATATCCCAGACATGGCCT
* * * * *
101763380 TATATGAAGTCTCATATCGGTGCCG
66 TACATGAAATCACATAACGATGCCG
* * * * *
101763405 ATGCCATGTCCCAGACATGGTCTTATACGGGACC-TCATATCGATGCCATGTCCCAGACATGGTC
1 AAGCCATGTCCCAGACATGGTCTTATATGGGACCAT-ACATCGATGCCATATCCCAGACATGGCC
*
101763469 TTACATGAAATCACTTAACGATGCCG
65 TTACATGAAATCACATAACGATGCCG
* * *
101763495 AAGCCATATCCCTGATATGGTCTTATATGGGA
1 AAGCCATGTCCCAGACATGGTCTTATATGGGA
101763527 TCTCGTCTCG
Statistics
Matches: 99, Mismatches: 22, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
89 1 0.01
90 98 0.99
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (90 bp):
AAGCCATGTCCCAGACATGGTCTTATATGGGACCATACATCGATGCCATATCCCAGACATGGCCT
TACATGAAATCACATAACGATGCCG
Found at i:101763491 original size:42 final size:42
Alignment explanation
Indices: 101763403--101763493 Score: 110
Period size: 42 Copynumber: 2.2 Consensus size: 42
101763393 ATATCGGTGC
* ** * *
101763403 CGATGCCATGTCCCAGACATGGTCTTATACGGGACCTCATAT
1 CGATGCCATGTCCCAGACATGGTCTTACACGAAACCACATAA
* * *
101763445 CGATGCCATGTCCCAGACATGGTCTTACATGAAATCACTTAA
1 CGATGCCATGTCCCAGACATGGTCTTACACGAAACCACATAA
101763487 CGATGCC
1 CGATGCC
101763494 GAAGCCATAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (42 bp):
CGATGCCATGTCCCAGACATGGTCTTACACGAAACCACATAA
Found at i:101768121 original size:40 final size:40
Alignment explanation
Indices: 101767919--101768126 Score: 224
Period size: 40 Copynumber: 5.2 Consensus size: 40
101767909 TGAATGATAC
* *
101767919 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAACATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATCATAT
* * *
101767959 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGTTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATCATAT
** *
101767999 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TCATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATCATAT
* * *
101768039 CCGGGCTAAGACCCGAAGGCATTTATGCAAGAT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATCATAT
* * * * * *
101768079 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATCATAT
101768119 CC-GGCTAA
1 CCGGGCTAA
101768127 ATTCCGAAGA
Statistics
Matches: 141, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
39 6 0.04
40 133 0.94
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATCATAT
Found at i:101772178 original size:49 final size:49
Alignment explanation
Indices: 101772118--101772326 Score: 386
Period size: 49 Copynumber: 4.3 Consensus size: 49
101772108 GTATGAGATA
101772118 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTC
101772167 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTC
*
101772216 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTC
101772265 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTC
*
101772312 TATAAATGTGATAAG
1 TATATATGTGATAAG
101772327 TCCCGAAGGG
Statistics
Matches: 158, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
47 14 0.09
49 144 0.91
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.31
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTC
Found at i:101773998 original size:34 final size:34
Alignment explanation
Indices: 101773955--101774022 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
101773945 TTAAGATCTT
101773955 GACAGCCTTGTTATCTAGAAGAGCCCAACTCAAA
1 GACAGCCTTGTTATCTAGAAGAGCCCAACTCAAA
101773989 GACAGCCTTGTTATCTAGAAGAGCCCAACTCAAA
1 GACAGCCTTGTTATCTAGAAGAGCCCAACTCAAA
101774023 TTAACGGTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (34 bp):
GACAGCCTTGTTATCTAGAAGAGCCCAACTCAAA
Found at i:101775736 original size:30 final size:30
Alignment explanation
Indices: 101775702--101775764 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
101775692 ATTTAACAAG
*
101775702 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
*
101775732 CAAATACCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
101775762 CAA
1 CAA
101775765 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.59, C:0.16, G:0.02, T:0.24
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:101783312 original size:40 final size:40
Alignment explanation
Indices: 101783250--101783339 Score: 135
Period size: 40 Copynumber: 2.2 Consensus size: 40
101783240 TATGATAAAG
*
101783250 ACGCCACAAAAGGTCAAACATTAGCGGTGCTAGGAGAAAA
1 ACGCCACAAAAGGTCAAACATTAGCGGTACTAGGAGAAAA
* * *
101783290 ATGCCACAAAAGGTCAAGCATTAGTGGTACTAGGAGAAAA
1 ACGCCACAAAAGGTCAAACATTAGCGGTACTAGGAGAAAA
*
101783330 ACGCCGCAAA
1 ACGCCACAAA
101783340 GTATAATTTC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.42, C:0.20, G:0.24, T:0.13
Consensus pattern (40 bp):
ACGCCACAAAAGGTCAAACATTAGCGGTACTAGGAGAAAA
Found at i:101783576 original size:25 final size:25
Alignment explanation
Indices: 101783493--101783581 Score: 74
Period size: 25 Copynumber: 3.5 Consensus size: 25
101783483 CGGCCATCTA
* *
101783493 CTGCATCACCATCGACTGTCCCCTCTG
1 CTGCATCACCATCGAC--ACTCCTCTG
* * *
101783520 -TCGCATCACCGTCGACAGTTCTCTG
1 CT-GCATCACCATCGACACTCCTCTG
101783545 CCT-CATCACCATCGACACTCCTCTG
1 -CTGCATCACCATCGACACTCCTCTG
*
101783570 CTGCATCGCCAT
1 CTGCATCACCAT
101783582 GTAAGTCTTC
Statistics
Matches: 49, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
24 2 0.04
25 32 0.65
26 1 0.02
27 14 0.29
ACGTcount: A:0.17, C:0.43, G:0.15, T:0.26
Consensus pattern (25 bp):
CTGCATCACCATCGACACTCCTCTG
Found at i:101785376 original size:18 final size:18
Alignment explanation
Indices: 101785365--101785399 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
101785355 GAGGATGAGG
101785365 ATACATGAGAGGTGGAGC
1 ATACATGAGAGGTGGAGC
*
101785383 ATACATGAGAGATGGAG
1 ATACATGAGAGGTGGAG
101785400 GAGGGTGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.37, T:0.17
Consensus pattern (18 bp):
ATACATGAGAGGTGGAGC
Found at i:101786374 original size:14 final size:14
Alignment explanation
Indices: 101786336--101786379 Score: 56
Period size: 13 Copynumber: 3.2 Consensus size: 14
101786326 TAAAATGTAC
101786336 AATATAATTAAA-T
1 AATATAATTAAATT
101786349 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
101786364 AA-ATAATTTAATT
1 AATATAATTAAATT
101786377 AAT
1 AAT
101786380 TGTTTACCCG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:101789898 original size:16 final size:16
Alignment explanation
Indices: 101789879--101789910 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
101789869 ATGTACAAAA
101789879 ATATATATGTGTTTAT
1 ATATATATGTGTTTAT
*
101789895 ATATATGTGTGTTTAT
1 ATATATATGTGTTTAT
101789911 TTGAAGTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (16 bp):
ATATATATGTGTTTAT
Found at i:101790364 original size:24 final size:24
Alignment explanation
Indices: 101790337--101790669 Score: 218
Period size: 24 Copynumber: 13.9 Consensus size: 24
101790327 GAAATGACTT
*
101790337 TGGCACTATGTGTGCTAATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* *
101790361 TGGCACTATGTGTACGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* * *
101790385 TGGCACTATGTGTGTGGATTTGAT
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
101790409 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
*
101790434 -GGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* *
101790457 TTGCACTATATGTGC-AGATTT-ATA
1 TGGCACTATGTGTGCGA-ATTTGA-A
*
101790481 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * * *
101790505 TGTCAATATGTATGTGAAATACT-AA
1 TGGCACTATGTGTGCG-AAT-TTGAA
*
101790530 -GGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* *
101790553 TGGCACTATATGTGCAAATTT-ATA
1 TGGCACTATGTGTGCGAATTTGA-A
*
101790577 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
101790601 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
* ** *
101790626 -GGCACTATGTGTGTG-GGTTAACA
1 TGGCACTATGTGTGCGAATTTGA-A
*
101790649 TGGCACTATGGGTGCGAATTT
1 TGGCACTATGTGTGCGAATTT
101790670 CCTTGCTTGA
Statistics
Matches: 233, Mismatches: 56, Indels: 39
0.71 0.17 0.12
Matches are distributed among these distances:
21 1 0.00
22 3 0.01
23 8 0.03
24 207 0.89
25 11 0.05
26 3 0.01
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:101790389 original size:48 final size:48
Alignment explanation
Indices: 101790337--101790638 Score: 284
Period size: 48 Copynumber: 6.3 Consensus size: 48
101790327 GAAATGACTT
* * * * **
101790337 TGGCACTATGTGTGCTAATTTGAATGGCACTATGTGTACGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAATGGCAATATGTATGCGAATTACTA
* * * * *
101790385 TGGCACTATGTGTGTGGATTTGATTGTCAATATGTATGTGAATTACTA
1 TGGCACTATGTGTGCGAATTTGAATGGCAATATGTATGCGAATTACTA
* * * * * * *
101790433 AGGCACTATGTGTGCGAATTTGTATTGCACTATATGTGCAGATTTA-TA
1 TGGCACTATGTGTGCGAATTTGAATGGCAATATGTATGC-GAATTACTA
* * * *
101790481 TGGCACTATGTGTGCGGATTTGAATGTCAATATGTATGTGAAATACTA
1 TGGCACTATGTGTGCGAATTTGAATGGCAATATGTATGCGAATTACTA
* * * * * *
101790529 AGGCACTATGTGTGCGAATTTGTATGGCACTATATGTGCAAATTTA-TA
1 TGGCACTATGTGTGCGAATTTGAATGGCAATATGTATGCGAA-TTACTA
* * *
101790577 TGGCACTATGTGTGCGGATTTGAATGTCAATATGTATGTGAATTACTA
1 TGGCACTATGTGTGCGAATTTGAATGGCAATATGTATGCGAATTACTA
*
101790625 AGGCACTATGTGTG
1 TGGCACTATGTGTG
101790639 TGGGTTAACA
Statistics
Matches: 196, Mismatches: 54, Indels: 8
0.76 0.21 0.03
Matches are distributed among these distances:
47 7 0.04
48 182 0.93
49 7 0.04
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.37
Consensus pattern (48 bp):
TGGCACTATGTGTGCGAATTTGAATGGCAATATGTATGCGAATTACTA
Found at i:101790657 original size:96 final size:96
Alignment explanation
Indices: 101790338--101790638 Score: 503
Period size: 96 Copynumber: 3.1 Consensus size: 96
101790328 AAATGACTTT
* * * * * * *
101790338 GGCACTATGTGTGCTAATTTGAATGGCACTATGTGTACGAATTTGTATGGCACTATGTGTGTGGA
1 GGCACTATGTGTGCGAATTTGTATGGCACTATATGTGCAAATTTATATGGCACTATGTGTGCGGA
*
101790403 TTTGATTGTCAATATGTATGTGAATTACTAA
66 TTTGAATGTCAATATGTATGTGAATTACTAA
* *
101790434 GGCACTATGTGTGCGAATTTGTATTGCACTATATGTGCAGATTTATATGGCACTATGTGTGCGGA
1 GGCACTATGTGTGCGAATTTGTATGGCACTATATGTGCAAATTTATATGGCACTATGTGTGCGGA
*
101790499 TTTGAATGTCAATATGTATGTGAAATACTAA
66 TTTGAATGTCAATATGTATGTGAATTACTAA
101790530 GGCACTATGTGTGCGAATTTGTATGGCACTATATGTGCAAATTTATATGGCACTATGTGTGCGGA
1 GGCACTATGTGTGCGAATTTGTATGGCACTATATGTGCAAATTTATATGGCACTATGTGTGCGGA
101790595 TTTGAATGTCAATATGTATGTGAATTACTAA
66 TTTGAATGTCAATATGTATGTGAATTACTAA
101790626 GGCACTATGTGTG
1 GGCACTATGTGTG
101790639 TGGGTTAACA
Statistics
Matches: 191, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 191 1.00
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.37
Consensus pattern (96 bp):
GGCACTATGTGTGCGAATTTGTATGGCACTATATGTGCAAATTTATATGGCACTATGTGTGCGGA
TTTGAATGTCAATATGTATGTGAATTACTAA
Found at i:101794866 original size:26 final size:26
Alignment explanation
Indices: 101794837--101794944 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
101794827 TGGTACAAAT
101794837 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
101794863 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101794889 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101794915 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
101794941 TGAT
1 TGAT
101794945 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:101796458 original size:26 final size:26
Alignment explanation
Indices: 101796428--101796480 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
101796418 TTTATAGTTT
101796428 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
101796454 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
101796480 T
1 T
101796481 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:101797050 original size:26 final size:26
Alignment explanation
Indices: 101797020--101797127 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
101797010 TGAAATGCCC
*
101797020 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
101797046 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
101797072 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
101797098 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
101797124 ATCA
1 ATCA
101797128 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:101802582 original size:25 final size:27
Alignment explanation
Indices: 101802545--101802597 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
101802535 TCAAACATGC
101802545 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
101802571 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
101802597 A
1 A
101802598 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:101804079 original size:26 final size:26
Alignment explanation
Indices: 101804049--101804156 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
101804039 TGAAATGCCC
101804049 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
101804075 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
101804101 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
101804127 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
101804153 ATCA
1 ATCA
101804157 ATTTGTACCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:101808362 original size:30 final size:30
Alignment explanation
Indices: 101808328--101808388 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
101808318 TCCTTAACTC
101808328 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
101808358 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
101808388 A
1 A
101808389 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:101812745 original size:80 final size:80
Alignment explanation
Indices: 101812661--101812809 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
101812651 TATGGTAACC
* * * *
101812661 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
101812725 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
101812741 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
101812806 CCGG
66 CCGG
101812810 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:101812751 original size:40 final size:38
Alignment explanation
Indices: 101812702--101812809 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
101812692 ATCACGATTT
*
101812702 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
101812742 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
101812782 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
101812810 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:101816665 original size:40 final size:40
Alignment explanation
Indices: 101816616--101816783 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
101816606 TCTTCGGAAT
* * *
101816616 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
101816655 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
101816695 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
101816735 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
101816775 TTAGCCCGG
1 TTAGCCCGG
101816784 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:101825470 original size:39 final size:40
Alignment explanation
Indices: 101825347--101825512 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
101825337 AAATTGAATG
* * *
101825347 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
101825386 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
101825426 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
101825465 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
101825505 ATATCCGG
1 ATATCCGG
101825513 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:101825479 original size:79 final size:79
Alignment explanation
Indices: 101825347--101825496 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
101825337 AAATTGAATG
*
101825347 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
101825412 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
101825426 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
101825489 ATTTGTGC
64 AATTGTGC
101825497 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:101827815 original size:40 final size:40
Alignment explanation
Indices: 101827770--101827899 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
101827760 CGGAATACAA
101827770 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
101827810 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
101827850 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
101827890 CCGGATATAA
1 CCGGATATAA
101827900 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:101835896 original size:40 final size:40
Alignment explanation
Indices: 101835851--101835980 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
101835841 CGGAATACAA
101835851 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
101835891 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
101835931 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
101835971 CCGGATATAA
1 CCGGATATAA
101835981 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:101839925 original size:17 final size:17
Alignment explanation
Indices: 101839903--101839937 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
101839893 GAAATTAGAT
*
101839903 CGTGTGGGTCCTACGGG
1 CGTGTGGGCCCTACGGG
*
101839920 CGTGTGGGCCCTATGGG
1 CGTGTGGGCCCTACGGG
101839937 C
1 C
101839938 ATGTAGAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.26, G:0.46, T:0.23
Consensus pattern (17 bp):
CGTGTGGGCCCTACGGG
Found at i:101858261 original size:40 final size:41
Alignment explanation
Indices: 101858214--101858310 Score: 119
Period size: 40 Copynumber: 2.4 Consensus size: 41
101858204 TAAGTCGGTA
* * *
101858214 TCGCACACTTAGTGCC-TTATATAGCCAAAGCTATGCT-AAC
1 TCGCACACTTAGTGCCACT-TAGAGCCAAAGCTATACTAAAC
* *
101858254 TCGCACACTTAGTGCCACTTAGAGCCAGAGCTATATTAAAC
1 TCGCACACTTAGTGCCACTTAGAGCCAAAGCTATACTAAAC
101858295 -CGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
101858311 ATCATAGTCG
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
40 46 0.92
41 4 0.08
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (41 bp):
TCGCACACTTAGTGCCACTTAGAGCCAAAGCTATACTAAAC
Found at i:101859489 original size:13 final size:13
Alignment explanation
Indices: 101859471--101859500 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
101859461 GCACACGGGC
101859471 GTGTAACATGGAT
1 GTGTAACATGGAT
*
101859484 GTGTAACATGGGT
1 GTGTAACATGGAT
101859497 GTGT
1 GTGT
101859501 CCCTGTCGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.07, G:0.37, T:0.33
Consensus pattern (13 bp):
GTGTAACATGGAT
Found at i:101861793 original size:12 final size:12
Alignment explanation
Indices: 101861776--101861803 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
101861766 CATGTCTTAC
101861776 ACGAACTCATAT
1 ACGAACTCATAT
101861788 ACGAACTCATAT
1 ACGAACTCATAT
101861800 ACGA
1 ACGA
101861804 TGCCAATGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.25, G:0.11, T:0.21
Consensus pattern (12 bp):
ACGAACTCATAT
Found at i:101862811 original size:41 final size:41
Alignment explanation
Indices: 101862715--101862840 Score: 209
Period size: 41 Copynumber: 3.0 Consensus size: 41
101862705 CTTCGTTTTC
*
101862715 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATA-TCACATA
*
101862757 TCGATGCCATAGCCCAGCTATAGTCTTACACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATCACATA
101862798 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-ATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATCACATA
101862839 TC
1 TC
101862841 TCACTGATGC
Statistics
Matches: 80, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
41 46 0.57
42 34 0.43
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (41 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATCACATA
Found at i:101862902 original size:47 final size:46
Alignment explanation
Indices: 101862799--101862922 Score: 162
Period size: 47 Copynumber: 2.7 Consensus size: 46
101862789 TATCACATAT
* * * *
101862799 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAATCACATATATCAC
*
101862845 TGATGCCATATCCCAGATATGGTCTTATAC-AAT-AGCATATATCAGAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAATCA-CATATATC--AC
101862892 CGATGCCATATCCCAGATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
101862923 GAAATCACTT
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
44 1 0.01
45 10 0.15
46 26 0.38
47 31 0.46
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAATCACATATATCAC
Found at i:101863064 original size:31 final size:31
Alignment explanation
Indices: 101862947--101863064 Score: 157
Period size: 31 Copynumber: 3.8 Consensus size: 31
101862937 CTTGTCACTT
* * * *
101862947 GTAGCCAAAGCTACCATTTTTCACAGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
101862978 GTAGCC-AGAGCTACCACTTTTCGCTAATCAG
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAG
*
101863009 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
101863040 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
101863065 TGTCATTTGT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
30 1 0.01
31 74 0.97
32 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:101863148 original size:50 final size:51
Alignment explanation
Indices: 101863040--101863168 Score: 206
Period size: 50 Copynumber: 2.5 Consensus size: 51
101863030 CACTGATCAG
* * *
101863040 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCATTGATCAGATAAGT
*
101863091 GTAGCCGAAGCTATCACTTATCACTT-TCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCATTGATCAGATAAGT
*
101863141 GTGGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
101863169 TGCCATGGTC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
50 47 0.65
51 25 0.35
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCATTGATCAGATAAGT
Found at i:101871006 original size:43 final size:44
Alignment explanation
Indices: 101870835--101871007 Score: 171
Period size: 43 Copynumber: 4.0 Consensus size: 44
101870825 ACATAGGATT
* *
101870835 TCGATATGTGATTTCGTGTAAGACCAC-GTCTGGGATGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACTGTCTGGGACGTTGGCA
* * *
101870878 TCGAGT-TGAGATTTACGTGTAAGACCA-TGTCTGGGACATCGGCA
1 TCGA-TATGTGA-TTACGTGTAAGACCACTGTCTGGGACGTTGGCA
* * *
101870922 TCG-TATTTGATTTCGTGTAAGACC-CTGTCTAGGACAG-TGGCA
1 TCGATATGTGATTACGTGTAAGACCACTGTCTGGGAC-GTTGGCA
* * *
101870964 TCGATATTTGATTACATGTAAAACCACT-TCTGGGACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACTGTCTGGGACGTTGGCA
101871007 T
1 T
101871008 TGTACGAGCT
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 31 0.29
43 42 0.40
44 33 0.31
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.32
Consensus pattern (44 bp):
TCGATATGTGATTACGTGTAAGACCACTGTCTGGGACGTTGGCA
Found at i:101874813 original size:28 final size:28
Alignment explanation
Indices: 101874773--101874842 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
101874763 ATAGTAAGTC
*
101874773 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
101874801 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
101874829 CGCACACTTAGTGC
1 CGCACACTTAGTGC
101874843 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:101875403 original size:2 final size:2
Alignment explanation
Indices: 101875396--101875421 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
101875386 GGCATACATT
101875396 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
101875422 GCCGAATGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:101882721 original size:28 final size:28
Alignment explanation
Indices: 101882681--101882750 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
101882671 ATAGTAAGTC
*
101882681 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
101882709 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
101882737 CGCACACTTAGTGC
1 CGCACACTTAGTGC
101882751 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:101883312 original size:2 final size:2
Alignment explanation
Indices: 101883305--101883334 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
101883295 GCCATACATT
101883305 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
101883335 GCCGAATGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:101885815 original size:40 final size:39
Alignment explanation
Indices: 101885760--101885923 Score: 168
Period size: 40 Copynumber: 4.2 Consensus size: 39
101885750 ATGATACCCG
* *
101885760 GGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCC
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCC
* *
101885799 AGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCC
1 -GGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATATCC
* * * ** *
101885839 GGGCTAAGACCTGAAGGCATTTGTGCAAGTTACCAAATCC
1 -GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCC
* * * *
101885879 GGGTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCC
101885918 GGCTAA
1 GGCTAA
101885924 ATTCGAAGAA
Statistics
Matches: 99, Mismatches: 23, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
39 35 0.35
40 62 0.63
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCC
Found at i:101885913 original size:79 final size:80
Alignment explanation
Indices: 101885757--101885923 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 80
101885747 TGAATGATAC
* * ** *
101885757 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCAGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCAGGCTAAGACCCGAAGGCATTCG
*
101885822 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
* * * *
101885837 CCGGGCTAAGACCTGAAGGCATTTGTGCAAGTTACCAAATCC-GGGTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCAGGCTAAGACCCGAAGGC-ATTC
**
101885900 GTGCTTGTGGTTATAT
65 GTGCGAGTGGTTATAT
101885916 CC-GGCTAA
1 CCGGGCTAA
101885924 ATTCGAAGAA
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
78 6 0.08
79 31 0.42
80 37 0.50
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCAGGCTAAGACCCGAAGGCATTCG
TGCGAGTGGTTATAT
Found at i:101893887 original size:40 final size:40
Alignment explanation
Indices: 101893765--101893912 Score: 172
Period size: 40 Copynumber: 3.7 Consensus size: 40
101893755 TGAATGATAC
* * * **
101893765 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGAGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATTATAT
* * *
101893805 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATTATAT
** *
101893845 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATTATAT
*
101893885 CCGGG-TAAAGACCCGAAGGCAATTGTGC
1 CCGGGCT-AAGACCCGAAGGCATTTGTGC
101893913 TTGTGGTTAT
Statistics
Matches: 93, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 1 0.01
40 92 0.99
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTATTATAT
Found at i:101893898 original size:80 final size:80
Alignment explanation
Indices: 101893765--101893932 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
101893755 TGAATGATAC
* * ** *
101893765 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGAGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGAGACCAAATCCGGGCTAAGACCCGAAGGCAATT-
*
101893829 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* **
101893845 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGG-TAAAGACCCGAAGGCAATT
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGAGACCAAATCCGGGCT-AAGACCCGAAGGCAATT
**
101893909 GTGCTTGTGGTTATAT
65 GTGCGAGTGGTTATAT
101893925 CC-GGCTAA
1 CCGGGCTAA
101893933 ATTTCGAAGA
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
79 7 0.09
80 65 0.87
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGAGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:101893927 original size:40 final size:40
Alignment explanation
Indices: 101893765--101893932 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 40
101893755 TGAATGATAC
* * * *
101893765 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGAGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
101893805 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * ** *
101893845 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* *
101893885 CCGGG-TAAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCT-AAGACCCGAAGGCAATTGTGCTAGTGATTATAT
101893925 CC-GGCTAA
1 CCGGGCTAA
101893933 ATTTCGAAGA
Statistics
Matches: 103, Mismatches: 19, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
39 8 0.08
40 92 0.89
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:101896774 original size:46 final size:45
Alignment explanation
Indices: 101896724--101896896 Score: 206
Period size: 46 Copynumber: 3.8 Consensus size: 45
101896714 TGGTTGAGCA
*
101896724 TCCGAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * * *
101896770 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGAAG
101896815 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
101896863 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
101896897 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
45 2 0.02
46 67 0.63
47 36 0.34
48 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:101896879 original size:93 final size:93
Alignment explanation
Indices: 101896720--101896891 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
101896710 AGGATGGTTG
* * *
101896720 AGCATCCGAACTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
101896785 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
*
101896813 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
101896878 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
101896892 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:101897799 original size:21 final size:21
Alignment explanation
Indices: 101897764--101897804 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
101897754 TTCTGACTTT
*
101897764 AAAAATTCATAATAAATTTTA
1 AAAAATTAATAATAAATTTTA
* *
101897785 AAAAATTAATTATAAGTTTT
1 AAAAATTAATAATAAATTTT
101897805 TCTTTATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (21 bp):
AAAAATTAATAATAAATTTTA
Found at i:101901664 original size:48 final size:48
Alignment explanation
Indices: 101901569--101901700 Score: 180
Period size: 47 Copynumber: 2.8 Consensus size: 48
101901559 GTGCGAACAA
**
101901569 TACCTTGATTTGGCTATGGGCCATGGTATAGGTA-TTTTGTGAGAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTTCAGTGAGAAGT
* *
101901616 TACCTTGATTTAGCTATGGGCCCATGGTATAGGTACTTCAG-GATAAGT
1 TACCTTGATTTGGCTATGGG-CCATGGTATAGGTACTTCAGTGAGAAGT
*
101901664 TA-CTGTGATTTGGCTACGGGCCATGGTATAGGTACTT
1 TACCT-TGATTTGGCTATGGGCCATGGTATAGGTACTT
101901701 ATCGATTGTG
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
47 38 0.50
48 35 0.46
49 3 0.04
ACGTcount: A:0.22, C:0.14, G:0.28, T:0.36
Consensus pattern (48 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTTCAGTGAGAAGT
Found at i:101905235 original size:18 final size:18
Alignment explanation
Indices: 101905203--101905249 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
101905193 AAAAAATATC
* *
101905203 GAAAATT-AGTTTACTTT
1 GAAAATTAAATTTACTTA
101905220 GAAAATTAAATTTACTTA
1 GAAAATTAAATTTACTTA
*
101905238 GAAAATAAAATT
1 GAAAATTAAATT
101905250 GTTATATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 7 0.27
18 19 0.73
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.38
Consensus pattern (18 bp):
GAAAATTAAATTTACTTA
Found at i:101914727 original size:297 final size:292
Alignment explanation
Indices: 101914173--101914734 Score: 657
Period size: 297 Copynumber: 1.9 Consensus size: 292
101914163 CATTATTAAT
* * * *
101914173 ATATACAATCGAAGAAGGTAAGAAGTTGTTCATATTAAAATCAAAATATATAAAACATATTAAAA
1 ATATACAATCGAAGAAGGTAAGAAATTGTACATATTAAAATAAAAATAGATAAAACATATTAAAA
* * * ** *
101914238 TGAACATATTGAGAGATAAATTTAATATTTTACCAATTCAATTTGTGTGAGTTCAAATTCGACCA
66 TGAAAATATTGAGAGATAAATTTAAAATTTTACCAATTCAATTGGCATGAGTTCAAATCCGACCA
* * **
101914303 TTAGTATATTTTTATTGTTTTTAATTAAAAAGATTAAAATACCCTCAAAAAATATAACTTATTTT
131 TTAGCATAGTTTTATTGTTTTTAATTAAAAAGATTAAAATACCCTCAAAAAATATAACTTAGATT
* * ** ****
101914368 AAATATGGAAGGTTATTTTTGTAATTTATCTAATCGAGTTGGGGCTTGGTTGACTAATGACACCA
196 AAATACGGAAGATTATTTTTGTAATTTATCTAATCGAGTTAAGGCCCAATTGACTAATGACACCA
101914433 ACTCAATTAGGGGTTTATTAATAGTAATATAG
261 ACTCAATTAGGGGTTTATTAATAGTAATATAG
* * * *
101914465 ATATACAATCGATA-AAGGTAATAAATTGTACATATTAAAATAAAAATGGATAAAATATGTTAAA
1 ATATACAATCGA-AGAAGGTAAGAAATTGTACATATTAAAATAAAAATAGATAAAACATATTAAA
* * *
101914529 AT-AAAATTTTGATTGAATAGTAAATTTAAAATTTTACCAATTTAATTGGCAT-AGGTTCAAATC
65 ATGAAAATATTGA--G-AGA-TAAATTTAAAATTTTACCAATTCAATTGGCATGA-GTTCAAATC
* * * * *
101914592 CG-GCACTTTGCATAGTTTTATTGTTTTTTTAATTAAAAAGATTAAAGTACCCTTAAATAATATA
125 CGACCA-TTAGCATAGTTTTATTG--TTTTTAATTAAAAAGATTAAAATACCCTCAAAAAATATA
* *
101914656 ACTTAGATTAAATACGGAAGATTATTTTTGTAATTTTTCTAA-CGGAGTTAATGCCCAATTGACT
187 ACTTAGATTAAATACGGAAGATTATTTTTGTAATTTATCTAATC-GAGTTAAGGCCCAATTGACT
* *
101914720 TATGACACTAACTCA
251 AATGACACCAACTCA
101914735 GTCAGAGTTT
Statistics
Matches: 222, Mismatches: 38, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
291 8 0.04
292 56 0.25
293 2 0.01
294 5 0.02
295 51 0.23
296 1 0.00
297 99 0.45
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.37
Consensus pattern (292 bp):
ATATACAATCGAAGAAGGTAAGAAATTGTACATATTAAAATAAAAATAGATAAAACATATTAAAA
TGAAAATATTGAGAGATAAATTTAAAATTTTACCAATTCAATTGGCATGAGTTCAAATCCGACCA
TTAGCATAGTTTTATTGTTTTTAATTAAAAAGATTAAAATACCCTCAAAAAATATAACTTAGATT
AAATACGGAAGATTATTTTTGTAATTTATCTAATCGAGTTAAGGCCCAATTGACTAATGACACCA
ACTCAATTAGGGGTTTATTAATAGTAATATAG
Found at i:101915538 original size:7 final size:7
Alignment explanation
Indices: 101915528--101915664 Score: 120
Period size: 7 Copynumber: 19.7 Consensus size: 7
101915518 TCGAACCCTG
101915528 AGGTTTA
1 AGGTTTA
101915535 AGGTTT-
1 AGGTTTA
101915541 -GGTTT-
1 AGGTTTA
*
101915546 AGAATTTA
1 AG-GTTTA
*
101915554 AGGTTTT
1 AGGTTTA
101915561 AGGTTTA
1 AGGTTTA
101915568 AGGTTTA
1 AGGTTTA
101915575 AGGTTTA
1 AGGTTTA
101915582 AGGTTTA
1 AGGTTTA
* *
101915589 AGATTGA
1 AGGTTTA
*
101915596 AGGTTCA
1 AGGTTTA
101915603 AGGTTTA
1 AGGTTTA
*
101915610 GGGTTTA
1 AGGTTTA
*
101915617 AGAATTTA
1 AG-GTTTA
101915625 AGGTTTA
1 AGGTTTA
**
101915632 AGGTTCG
1 AGGTTTA
101915639 A-GTTTA
1 AGGTTTA
*
101915645 AGGCTTAA
1 AGG-TTTA
*
101915653 AGGTTTG
1 AGGTTTA
101915660 AGGTT
1 AGGTT
101915665 ACGAGTTACA
Statistics
Matches: 104, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
5 5 0.05
6 5 0.05
7 80 0.77
8 14 0.13
ACGTcount: A:0.28, C:0.02, G:0.29, T:0.41
Consensus pattern (7 bp):
AGGTTTA
Found at i:101915761 original size:27 final size:28
Alignment explanation
Indices: 101915723--101915776 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
101915713 CCAGGGTTAC
* *
101915723 GGGTTTGTGGTTTGGG-TTCTATATTTT
1 GGGTTTGTGGTTCGGGATTCTAAATTTT
101915750 GGGTTTAG-GGTTCGGGATTCTAAATTT
1 GGGTTT-GTGGTTCGGGATTCTAAATTT
101915777 AAGGCTTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.13, C:0.06, G:0.33, T:0.48
Consensus pattern (28 bp):
GGGTTTGTGGTTCGGGATTCTAAATTTT
Found at i:101915976 original size:17 final size:17
Alignment explanation
Indices: 101915954--101915989 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
101915944 CATGTATTTA
101915954 AAATTTGAATATGTGGT
1 AAATTTGAATATGTGGT
*
101915971 AAATTTGAATATGTTGT
1 AAATTTGAATATGTGGT
101915988 AA
1 AA
101915990 GTTATTCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.42
Consensus pattern (17 bp):
AAATTTGAATATGTGGT
Found at i:101917383 original size:30 final size:30
Alignment explanation
Indices: 101917347--101917406 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
101917337 CCATCTTAAG
101917347 GCCACATACATATACAAACATAACAACCAT
1 GCCACATACATATACAAACATAACAACCAT
* * *
101917377 GCCACATACATATATAAATATAAGAACCAT
1 GCCACATACATATACAAACATAACAACCAT
101917407 TACAAAGCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.50, C:0.25, G:0.05, T:0.20
Consensus pattern (30 bp):
GCCACATACATATACAAACATAACAACCAT
Found at i:101919585 original size:40 final size:39
Alignment explanation
Indices: 101919483--101919622 Score: 174
Period size: 40 Copynumber: 3.5 Consensus size: 39
101919473 GGACTAAGAT
* *
101919483 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
* *
101919523 CTGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
*
101919563 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGCTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCGGG-TTAAGTC
* *
101919603 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
101919623 CGTTATATCC
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
40 84 0.95
41 4 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:101929018 original size:79 final size:82
Alignment explanation
Indices: 101928903--101929085 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 82
101928893 CGACTCGCTC
** * *
101928903 AATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATCCTAACCCGG
* *
101928966 GTTTAGTAACTT-GCACA
65 ATATAGTAACTTAGCACA
* **
101928983 AATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGA
*
101929046 TATAGTCACTTAGCACA
66 TATAGTAACTTAGCACA
101929063 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
101929086 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.61
80 32 0.36
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (82 bp):
AATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGA
TATAGTAACTTAGCACA
Found at i:101929085 original size:40 final size:40
Alignment explanation
Indices: 101928906--101929085 Score: 161
Period size: 40 Copynumber: 4.5 Consensus size: 40
101928896 CTCGCTCAAT
** * * *
101928906 GCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAAA
* * * *
101928946 GCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC-AAA
1 GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAAA
* * *
101928985 TGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAAT
1 -GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAAA
* * * *
101929025 GCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCAC-AAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCACGAAA
101929065 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
101929086 CATCATTCGA
Statistics
Matches: 112, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
38 2 0.02
39 30 0.27
40 72 0.64
41 8 0.07
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAAA
Found at i:101937036 original size:79 final size:82
Alignment explanation
Indices: 101936920--101937104 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
101936910 ACGACTCGCT
** * *
101936920 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
101936983 GGGTTTAGTAACTT-GCA
65 GGATATAGTAACTTAGCA
* **
101937000 CAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
*
101937063 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
101937080 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
101937105 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
GATATAGTAACTTAGCA
Found at i:101937104 original size:40 final size:39
Alignment explanation
Indices: 101936913--101937104 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
101936903 GGATATAACG
* ** * *
101936913 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
101936953 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
101936993 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
101937032 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
101937072 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
101937105 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:101954865 original size:30 final size:30
Alignment explanation
Indices: 101954829--101954887 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
101954819 AATAGACGTG
101954829 ATTGCCTAAATTGACAAATCATCAAACATA
1 ATTGCCTAAATTGACAAATCATCAAACATA
* *
101954859 ATTGCCTAAATTGACGAATCATCAGACAT
1 ATTGCCTAAATTGACAAATCATCAAACAT
101954888 GACCCAAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.27
Consensus pattern (30 bp):
ATTGCCTAAATTGACAAATCATCAAACATA
Found at i:101956226 original size:11 final size:11
Alignment explanation
Indices: 101956195--101956230 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 11
101956185 GGCCCATACC
101956195 AAAACCAAAAT
1 AAAACCAAAAT
101956206 AAAACACAAAAT
1 AAAAC-CAAAAT
101956218 AAAACC-AAAT
1 AAAACCAAAAT
101956228 AAA
1 AAA
101956231 TTAAACAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 7 0.29
11 6 0.25
12 11 0.46
ACGTcount: A:0.75, C:0.17, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAACCAAAAT
Found at i:101956307 original size:22 final size:21
Alignment explanation
Indices: 101956269--101956310 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
101956259 CCCAAAATAC
* *
101956269 AAAAAAATAGAAGCCCAAACA
1 AAAAAAATAAAACCCCAAACA
101956290 AAAAAAATTAAAACCCCAAAC
1 AAAAAAA-TAAAACCCCAAAC
101956311 CCTAGCCCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.67, C:0.21, G:0.05, T:0.07
Consensus pattern (21 bp):
AAAAAAATAAAACCCCAAACA
Found at i:101957850 original size:4 final size:4
Alignment explanation
Indices: 101957841--101957873 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
101957831 CAATATGGTT
101957841 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
101957874 CTTTCCTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:101961521 original size:49 final size:49
Alignment explanation
Indices: 101961463--101961763 Score: 479
Period size: 49 Copynumber: 6.3 Consensus size: 49
101961453 TACATGATAG
101961463 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
101961512 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
101961561 TATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
101961610 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
101961657 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * * * *
101961704 TATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
101961753 -A-ATGTGATAAG
1 TATATGTGATAAG
101961764 TCCCGAAGGG
Statistics
Matches: 241, Mismatches: 9, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
47 97 0.40
48 1 0.00
49 143 0.59
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:101961941 original size:37 final size:37
Alignment explanation
Indices: 101961882--101961964 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
101961872 CCGAGCTCTA
* *
101961882 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
* * *
101961919 AAGACCCGATGACCATGGGTGGAGATTTTGTCCTGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
101961956 AAGCCCCGA
1 AAGACCCGA
101961965 ACTAAAGGTT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (37 bp):
AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
Found at i:101963959 original size:23 final size:23
Alignment explanation
Indices: 101963906--101964032 Score: 89
Period size: 23 Copynumber: 5.6 Consensus size: 23
101963896 TATCACCCAA
* *
101963906 CAAACATAACC-AAGTTACCTTC
1 CAAACACAACCAAAGGTACCTTC
* * *
101963928 TAAATACAACCATAGGTACCCTT-
1 CAAACACAACCAAAGGTA-CCTTC
* *
101963951 CGAACACAACCAAATGTACCTTC
1 CAAACACAACCAAAGGTACCTTC
** *
101963974 CAAACACAACCAAACATACCCTC
1 CAAACACAACCAAAGGTACCTTC
* ** *
101963997 CAAGCACAACCAAATATACCCT-
1 CAAACACAACCAAAGGTACCTTC
*
101964019 CTAACACAACCAAA
1 CAAACACAACCAAA
101964033 TTGATAGCAC
Statistics
Matches: 84, Mismatches: 18, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
22 24 0.29
23 56 0.67
24 4 0.05
ACGTcount: A:0.44, C:0.35, G:0.05, T:0.17
Consensus pattern (23 bp):
CAAACACAACCAAAGGTACCTTC
Found at i:101963983 original size:46 final size:44
Alignment explanation
Indices: 101963908--101964032 Score: 117
Period size: 46 Copynumber: 2.8 Consensus size: 44
101963898 TCACCCAACA
* * * * * ** *
101963908 AACATAACCAAGTTACCTTCTAAATACAACCATAGGTACCCTTCG
1 AACACAACCAAATTACCTTCCAAACACAACCAAACATACCC-TCC
101963953 AACACAACCAAATGTACCTTCCAAACACAACCAAACATACCCTCC
1 AACACAACCAAAT-TACCTTCCAAACACAACCAAACATACCCTCC
* *
101963998 AAGCACAACCAAATATACCCT-CTAACACAACCAAA
1 AA-CACAACCAAAT-TACCTTCCAAACACAACCAAA
101964033 TTGATAGCAC
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
45 28 0.42
46 39 0.58
ACGTcount: A:0.44, C:0.34, G:0.05, T:0.17
Consensus pattern (44 bp):
AACACAACCAAATTACCTTCCAAACACAACCAAACATACCCTCC
Found at i:101966897 original size:5 final size:6
Alignment explanation
Indices: 101966880--101966955 Score: 62
Period size: 6 Copynumber: 12.0 Consensus size: 6
101966870 AGAAACAACC
* * * *
101966880 ATAAAA ATAAAA ATAAAACA ACTAAAA ACAAAA ATAAAG ATAAAG ATAAAG
1 ATAAAA ATAAAA AT-AAA-A A-TAAAA ATAAAA ATAAAA ATAAAA ATAAAA
* *
101966931 ATAAAAA ATAAAA CTAAAA AGAAAA
1 AT-AAAA ATAAAA ATAAAA ATAAAA
101966956 CAAATAAACT
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
6 43 0.73
7 10 0.17
8 5 0.08
9 1 0.02
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.13
Consensus pattern (6 bp):
ATAAAA
Found at i:101969564 original size:18 final size:18
Alignment explanation
Indices: 101969513--101969565 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
101969503 GGCTAAGGAC
101969513 TAAATTAGAAATCAAAATTAT
1 TAAA-TAGAAAT--AAATTAT
*
101969534 TAAA-AGATGATAAATTAT
1 TAAATAGA-AATAAATTAT
101969552 TAAATAGAAATAAA
1 TAAATAGAAATAAA
101969566 AATAATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 16 0.57
19 6 0.21
20 2 0.07
21 4 0.14
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (18 bp):
TAAATAGAAATAAATTAT
Found at i:101970471 original size:25 final size:25
Alignment explanation
Indices: 101970443--101970491 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
101970433 GTTGTAGATG
*
101970443 TATGAAATAATCACATGCCTGATAA
1 TATGAAATAATCACATGCCCGATAA
101970468 TATGAAATAATCACATGCCCGATA
1 TATGAAATAATCACATGCCCGATA
101970492 CTGCTTGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (25 bp):
TATGAAATAATCACATGCCCGATAA
Found at i:101975126 original size:40 final size:38
Alignment explanation
Indices: 101975076--101975237 Score: 189
Period size: 39 Copynumber: 4.1 Consensus size: 38
101975066 CAAATCCAAT
* * * *
101975076 CACCACCACAAAGCATGCGGGACTTTAAGCCCGAATATAA
1 CACCAGCACAAAGCCTTCGGGGC-TT-AGCCCGAATATAA
* *
101975116 TACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAA
1 CACCAGCACAAA-GCCTTCGGGGCTTAGCCCGAATATAA
*
101975155 CACCAGCACGAATGCCTTCGGGGCTTAGCCCGAATATAA
1 CACCAGCAC-AAAGCCTTCGGGGCTTAGCCCGAATATAA
* * *
101975194 CACCAGCACGAATGCCTTCGGGGCTTAGCCTGGATATAA
1 CACCAGCAC-AAAGCCTTCGGGGCTTAGCCCGAATATAA
101975233 CACCA
1 CACCA
101975238 AATCATATAA
Statistics
Matches: 109, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 87 0.80
40 14 0.13
41 8 0.07
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (38 bp):
CACCAGCACAAAGCCTTCGGGGCTTAGCCCGAATATAA
Found at i:101975147 original size:39 final size:39
Alignment explanation
Indices: 101975103--101975237 Score: 225
Period size: 39 Copynumber: 3.5 Consensus size: 39
101975093 CGGGACTTTA
* *
101975103 AGCCCGAATATAATACCAGCACAAATGCCTTCGGGGCTT
1 AGCCCGAATATAACACCAGCACGAATGCCTTCGGGGCTT
*
101975142 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
1 AGCCCGAATATAACACCAGCACGAATGCCTTCGGGGCTT
101975181 AGCCCGAATATAACACCAGCACGAATGCCTTCGGGGCTT
1 AGCCCGAATATAACACCAGCACGAATGCCTTCGGGGCTT
* *
101975220 AGCCTGGATATAACACCA
1 AGCCCGAATATAACACCA
101975238 AATCATATAA
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 90 1.00
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.19
Consensus pattern (39 bp):
AGCCCGAATATAACACCAGCACGAATGCCTTCGGGGCTT
Found at i:101977243 original size:19 final size:19
Alignment explanation
Indices: 101977219--101977259 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
101977209 GTTATAATAT
101977219 TAATATTCATTTAATATTA
1 TAATATTCATTTAATATTA
*
101977238 TAATATTCATTTCATATTA
1 TAATATTCATTTAATATTA
101977257 TAA
1 TAA
101977260 AACAATTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATATTCATTTAATATTA
Found at i:101982163 original size:13 final size:13
Alignment explanation
Indices: 101982145--101982178 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
101982135 GACACGCGGG
101982145 CGTGTGTGTAGGC
1 CGTGTGTGTAGGC
*
101982158 CGTGTGTCTAGGC
1 CGTGTGTGTAGGC
101982171 CGTGTGTG
1 CGTGTGTG
101982179 ACATACTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.06, C:0.18, G:0.44, T:0.32
Consensus pattern (13 bp):
CGTGTGTGTAGGC
Found at i:101989535 original size:40 final size:39
Alignment explanation
Indices: 101989483--101989697 Score: 191
Period size: 40 Copynumber: 5.4 Consensus size: 39
101989473 GATTGTCTTT
* * *
101989483 GGGACATT-GCCCGGTTATAGTGATTCGCACAATTGCCTTC
1 GGGA-ATTAGCCCGGTT-TAGTAACTCGCACAAATGCCTTC
*
101989523 GGGAATTAGCCCGGATTTAGTAACTCGCACGAATGCCTTC
1 GGGAATTAGCCCGG-TTTAGTAACTCGCACAAATGCCTTC
* * * *
101989563 GGGACTTAACCTGGTTTTGGTAACTCGCACAAATGCCTTC
1 GGGAATTAGCCCGG-TTTAGTAACTCGCACAAATGCCTTC
* * *
101989603 GGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTC
1 GGGAATTAGCCCGG-TTTAGTAACTCGCACAAATGCCTTC
* * * * *
101989643 GGAAATT-GACCCAGATTTAGTCACTTAGCACAAAAGCCTTC
1 GGGAATTAG-CCC-GGTTTAGTAAC-TCGCACAAATGCCTTC
*
101989684 GGGACTTAGCCCGG
1 GGGAATTAGCCCGG
101989698 ACACCATTAA
Statistics
Matches: 147, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
39 3 0.02
40 118 0.80
41 25 0.17
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
GGGAATTAGCCCGGTTTAGTAACTCGCACAAATGCCTTC
Found at i:101989697 original size:81 final size:80
Alignment explanation
Indices: 101989517--101989698 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
101989507 TCGCACAATT
* * * * ** * *
101989517 GCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAACCTGGTTTTG
1 GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGAAATTAACCCAGATTTA
* *
101989582 GTAACTCGCACAAAT
66 GTAACTAGCACAAAA
* * * *
101989597 GCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGAAATTGACCCAGATTTA
1 GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGAAATTAACCCAGATTTA
*
101989662 GTCACTTAGCACAAAA
66 GTAAC-TAGCACAAAA
101989678 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
101989699 CACCATTAAA
Statistics
Matches: 84, Mismatches: 17, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
80 57 0.68
81 27 0.32
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGAAATTAACCCAGATTTA
GTAACTAGCACAAAA
Found at i:101996782 original size:42 final size:42
Alignment explanation
Indices: 101996736--101996848 Score: 115
Period size: 42 Copynumber: 2.7 Consensus size: 42
101996726 CCTCATACCT
* * *
101996736 ATGCCAATAGCCCAACTATGATCTTACACG-ATTCTCATATTG
1 ATGCC-ATAGCCCAACTATGGTCTTACACGAAATCTCATAATG
*
101996778 ATGCCAT-GTCCCAGAC-ATGGTCTTGCACGAAATCTCATAATG
1 ATGCCATAG-CCCA-ACTATGGTCTTACACGAAATCTCATAATG
* * *
101996820 ATGTCATATCCCAAATATGGTCTTACACG
1 ATGCCATAGCCCAACTATGGTCTTACACG
101996849 TATGACAAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
40 1 0.02
41 18 0.31
42 39 0.67
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACGAAATCTCATAATG
Found at i:102000069 original size:17 final size:17
Alignment explanation
Indices: 102000047--102000081 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
102000037 TATTATGGGG
102000047 AACATGGCTACAAGAAA
1 AACATGGCTACAAGAAA
102000064 AACATGGCTACAAGAAA
1 AACATGGCTACAAGAAA
102000081 A
1 A
102000082 CTACTTCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.17, G:0.17, T:0.11
Consensus pattern (17 bp):
AACATGGCTACAAGAAA
Found at i:102009039 original size:17 final size:17
Alignment explanation
Indices: 102009002--102009040 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
102008992 GTCTTTGACG
* *
102009002 AGCTTCCAACCAAGTCG
1 AGCTTCCAACCAAATCA
102009019 AGCTTCCAACCAAATCA
1 AGCTTCCAACCAAATCA
102009036 AGCTT
1 AGCTT
102009041 TTGTTGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.33, C:0.33, G:0.13, T:0.21
Consensus pattern (17 bp):
AGCTTCCAACCAAATCA
Found at i:102013203 original size:40 final size:40
Alignment explanation
Indices: 102013011--102013196 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
102013001 TCGAATGATG
* * *
102013011 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
102013051 TCCGGACTAAGAT-CCAAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
102013091 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
102013131 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTAGTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
102013172 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
102013197 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 115 0.92
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:102019749 original size:25 final size:25
Alignment explanation
Indices: 102019721--102019791 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
102019711 TATGTCGAAT
* *
102019721 CATAGTATATCATATCAGATCAGAC
1 CATAGCATATCATATCAAATCAGAC
*
102019746 CATAGCATATCATATCAAATCAGAT
1 CATAGCATATCATATCAAATCAGAC
* * *
102019771 CATGGCATAACATAACAAATC
1 CATAGCATATCATATCAAATC
102019792 CTACCCCCAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.44, C:0.21, G:0.10, T:0.25
Consensus pattern (25 bp):
CATAGCATATCATATCAAATCAGAC
Found at i:102020012 original size:16 final size:17
Alignment explanation
Indices: 102019991--102020025 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
102019981 TCATATCATT
102019991 ACCCACACC-CACCCCC
1 ACCCACACCACACCCCC
102020007 ACCCACACCTACACCCCC
1 ACCCACACC-ACACCCCC
102020025 A
1 A
102020026 AACATAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
18 8 0.47
ACGTcount: A:0.29, C:0.69, G:0.00, T:0.03
Consensus pattern (17 bp):
ACCCACACCACACCCCC
Found at i:102020348 original size:13 final size:13
Alignment explanation
Indices: 102020330--102020354 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102020320 TCGTTTGGTG
102020330 CACACAGTCTACC
1 CACACAGTCTACC
102020343 CACACAGTCTAC
1 CACACAGTCTAC
102020355 ACAGTTTCGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.44, G:0.08, T:0.16
Consensus pattern (13 bp):
CACACAGTCTACC
Found at i:102033437 original size:67 final size:66
Alignment explanation
Indices: 102033249--102033496 Score: 206
Period size: 68 Copynumber: 3.8 Consensus size: 66
102033239 ATATAGTTCG
*
102033249 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC-CAGT--T-TATCTC
1 GCTCTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGTGACCTAGCTCA-TCATATATCTC
102033309 GTA
64 GTA
* * * * * *
102033312 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCT-A-CATATATCC
1 GCTCTCTTGTCTACATGGTG---TACACTTAGTACCACCCATGTGACCTAGCTCATCATATATCT
102033375 CGTA
63 CGTA
* * * *
102033379 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGTGACCTAGCTACATCATATTGTCTT
1 GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGTGACCTAGCT-CATCATA-TATCTC
102033444 GTA
64 GTA
* * * * * **
102033447 GCTCTCTTGTAC-ACATGATGTGCACTCAGCACTATACATGTGACCTAGCT
1 GCTCTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGTGACCTAGCT
102033497 ACATACCATC
Statistics
Matches: 146, Mismatches: 26, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 23 0.16
66 26 0.18
67 32 0.22
68 45 0.31
69 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.31
Consensus pattern (66 bp):
GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGTGACCTAGCTCATCATATATCTCGT
A
Found at i:102035608 original size:16 final size:16
Alignment explanation
Indices: 102035587--102035618 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
102035577 AAAAGATAAC
*
102035587 ATATGGCATGTCATGT
1 ATATGGCATATCATGT
102035603 ATATGGCATATCATGT
1 ATATGGCATATCATGT
102035619 TGTAGAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (16 bp):
ATATGGCATATCATGT
Done.