Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 326 of 433
Found at i:102035943 original size:18 final size:17
Alignment explanation
Indices: 102035917--102035961 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 17
102035907 CAAAAGTATA
*
102035917 AAAAAATTATAATTTATC
1 AAAATATTATAA-TTATC
102035935 AAAATATTAATAATTATC
1 AAAATATT-ATAATTATC
102035953 AAAATATTA
1 AAAATATTA
102035962 AAAAAATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 1 0.04
18 20 0.80
19 4 0.16
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (17 bp):
AAAATATTATAATTATC
Found at i:102035962 original size:18 final size:19
Alignment explanation
Indices: 102035925--102035962 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
102035915 TAAAAAAATT
102035925 ATAATTTATCAAAATATTA
1 ATAATTTATCAAAATATTA
102035944 ATAA-TTATCAAAATATTA
1 ATAATTTATCAAAATATTA
102035962 A
1 A
102035963 AAAAATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (19 bp):
ATAATTTATCAAAATATTA
Found at i:102038019 original size:25 final size:25
Alignment explanation
Indices: 102037990--102038037 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102037980 TTATAATATG
* * *
102037990 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
102038015 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
102038038 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:102038106 original size:20 final size:20
Alignment explanation
Indices: 102038081--102038139 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
102038071 TAAATATGGT
102038081 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
102038101 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
102038121 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
102038140 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:102038259 original size:47 final size:48
Alignment explanation
Indices: 102038190--102038308 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
102038180 GAGGAAGTGA
102038190 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTAT-GCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTT-TGGCCCCAGTTATT
*
102038237 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTGGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
*
102038285 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
102038309 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 1 0.02
47 43 0.65
48 11 0.17
49 11 0.17
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
Found at i:102038284 original size:24 final size:24
Alignment explanation
Indices: 102038190--102038308 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
102038180 GAGGAAGTGA
*
102038190 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
102038214 GAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
102038237 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
102038261 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
102038285 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
102038309 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
23 22 0.26
24 51 0.61
25 11 0.13
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:102038535 original size:31 final size:31
Alignment explanation
Indices: 102038500--102038563 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
102038490 CGTTTACAGT
102038500 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
102038531 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
102038562 AA
1 AA
102038564 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:102046311 original size:25 final size:25
Alignment explanation
Indices: 102046282--102046329 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102046272 TTATAATATG
* * *
102046282 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
102046307 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
102046330 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:102046398 original size:20 final size:20
Alignment explanation
Indices: 102046373--102046431 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
102046363 TAAATATGGT
102046373 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
102046393 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
102046413 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
102046432 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:102046510 original size:24 final size:23
Alignment explanation
Indices: 102046483--102046574 Score: 134
Period size: 23 Copynumber: 4.0 Consensus size: 23
102046473 AGGAAGTGAA
102046483 AAAGGGCTTATGCCCCAGTTATCG
1 AAAGGGCTTATGCCCCAGTTAT-G
*
102046507 AAAGGGC-TATGCCCCAGTTATA
1 AAAGGGCTTATGCCCCAGTTATG
102046529 AAAGGGCTTATGCCCCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTA-TG
102046553 AAAGGGCTT-TGGCCCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTAT
102046575 TAAAAGAGGC
Statistics
Matches: 63, Mismatches: 2, Indels: 7
0.88 0.03 0.10
Matches are distributed among these distances:
22 7 0.11
23 29 0.46
24 27 0.43
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATG
Found at i:102046521 original size:23 final size:23
Alignment explanation
Indices: 102046482--102046599 Score: 139
Period size: 24 Copynumber: 5.0 Consensus size: 23
102046472 GAGGAAGTGA
*
102046482 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGC-TATGCCCCAGTTATT
*
102046506 GAAAGGGCTATGCCCCAGTTA-T
1 AAAAGGGCTATGCCCCAGTTATT
102046528 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGC-TATGCCCCAGTTATT
* *
102046552 GAAAGGGCTTTGGCCCCAGTTATT
1 AAAAGGGCTAT-GCCCCAGTTATT
*
102046576 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTATGCC-CCAGTTAT
102046600 ATGATAAAGC
Statistics
Matches: 81, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
22 7 0.09
23 28 0.35
24 34 0.42
25 12 0.15
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (23 bp):
AAAAGGGCTATGCCCCAGTTATT
Found at i:102046549 original size:46 final size:48
Alignment explanation
Indices: 102046482--102046599 Score: 170
Period size: 46 Copynumber: 2.5 Consensus size: 48
102046472 GAGGAAGTGA
102046482 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTAT-GCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTATGGCCCCAGTTATT
* *
102046528 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTGGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTATGGCCCCAGTTATT
*
102046576 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
102046600 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
46 33 0.51
47 10 0.15
48 11 0.17
49 11 0.17
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTATGGCCCCAGTTATT
Found at i:102046826 original size:31 final size:31
Alignment explanation
Indices: 102046791--102046854 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
102046781 CGTTTACAGT
102046791 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
102046822 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
102046853 AA
1 AA
102046855 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:102055124 original size:47 final size:47
Alignment explanation
Indices: 102054999--102055126 Score: 150
Period size: 47 Copynumber: 2.7 Consensus size: 47
102054989 AATCAATAAG
** * ** * *
102054999 TACCTATACCATGGCCCGCGGCCAAATTAATATAACTTATCTTGGAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTTGGAA
* * *
102055046 TATCTATACCATGGCCCATAGCCAAATCAAGGTAACTCCTCTCT-GAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCT-TGGAA
102055093 TACCTATACCATGGCCCGTAGCCAAATCAAGGTA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTA
102055127 TCACTCACAC
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
47 67 0.99
48 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (47 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTTGGAA
Found at i:102055713 original size:29 final size:28
Alignment explanation
Indices: 102055670--102055729 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
102055660 TATTCATTTA
*
102055670 TTTCACATTTCAACCCCTCAATTTACACT
1 TTTCACATTTCAACCCCT-AATTGACACT
*
102055699 TTTCACAATTT-AACCCCTAATTGACATT
1 TTTCAC-ATTTCAACCCCTAATTGACACT
102055727 TTT
1 TTT
102055730 ATCAAAAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 11 0.39
29 13 0.46
30 4 0.14
ACGTcount: A:0.28, C:0.28, G:0.02, T:0.42
Consensus pattern (28 bp):
TTTCACATTTCAACCCCTAATTGACACT
Found at i:102057849 original size:80 final size:80
Alignment explanation
Indices: 102057765--102057913 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
102057755 TATGGTAACC
* * * *
102057765 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
102057829 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
102057845 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
102057910 CCGG
66 CCGG
102057914 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:102057855 original size:40 final size:38
Alignment explanation
Indices: 102057806--102057913 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
102057796 ATCACGATTT
*
102057806 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
102057846 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
102057886 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
102057914 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:102065965 original size:80 final size:80
Alignment explanation
Indices: 102065881--102066029 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
102065871 TATGGTAACC
* * * *
102065881 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
102065945 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
102065961 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
102066026 CCGG
66 CCGG
102066030 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:102065971 original size:40 final size:38
Alignment explanation
Indices: 102065922--102066029 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
102065912 ATCACGATTT
*
102065922 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
102065962 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
102066002 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
102066030 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:102074956 original size:39 final size:40
Alignment explanation
Indices: 102074894--102074997 Score: 113
Period size: 40 Copynumber: 2.6 Consensus size: 40
102074884 CCGCACCAAG
* * * *
102074894 GCCTACGGGACTTAACCCGGATATCA-CGA-TTGCACAAAT
1 GCCTTCGGGTCTTAACCCGGATAT-AGCCACTAGCACAAAT
* * *
102074933 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACCATT
1 GCCTTCGGGTCTTAACCCGGATATAGCCACTAGCACAAAT
*
102074973 GCCTTCGGGTCTTAACCCGGTTATA
1 GCCTTCGGGTCTTAACCCGGATATA
102074998 ATTTCCAGCA
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
38 1 0.02
39 23 0.43
40 30 0.56
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAACCCGGATATAGCCACTAGCACAAAT
Found at i:102091721 original size:17 final size:17
Alignment explanation
Indices: 102091699--102091741 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
102091689 GGTCGAAGTG
*
102091699 GGGCCCATTGGGCTTTT
1 GGGCCCATTGGGCTTTC
102091716 GGGCCCATTGGGCTTTC
1 GGGCCCATTGGGCTTTC
102091733 GGGCCCATT
1 GGGCCCATT
102091742 TGGGAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.07, C:0.28, G:0.35, T:0.30
Consensus pattern (17 bp):
GGGCCCATTGGGCTTTC
Found at i:102092041 original size:25 final size:25
Alignment explanation
Indices: 102091998--102092045 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102091988 TTATAATATG
* * *
102091998 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
102092023 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
102092046 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:102092114 original size:20 final size:20
Alignment explanation
Indices: 102092089--102092147 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
102092079 TAAATATGGT
102092089 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
102092109 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
102092129 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
102092148 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:102092273 original size:47 final size:48
Alignment explanation
Indices: 102092198--102092302 Score: 160
Period size: 47 Copynumber: 2.2 Consensus size: 48
102092188 GAGGAAGTGA
*
102092198 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTAT-GCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTCATCGAAAGGGCTT-TGGCCCCAGTTATT
*
102092245 AAAAGGGCTTATGCCCCAGTCATTGAAAGGGCTTTGGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTCATCGAAAGGGCTTTGGCCCCAGTTATT
102092293 AAAAGAGGCT
1 AAAAG-GGCT
102092303 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
46 1 0.02
47 42 0.79
48 6 0.11
49 4 0.08
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.25
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTCATCGAAAGGGCTTTGGCCCCAGTTATT
Found at i:102092297 original size:24 final size:24
Alignment explanation
Indices: 102092198--102092316 Score: 145
Period size: 24 Copynumber: 5.0 Consensus size: 24
102092188 GAGGAAGTGA
*
102092198 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
102092222 GAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
*
102092245 AAAAGGGCTTATGCCCCAGTCATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
102092269 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
102092293 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
102092317 ATGATAAAGC
Statistics
Matches: 82, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
23 21 0.26
24 50 0.61
25 11 0.13
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:102092543 original size:31 final size:31
Alignment explanation
Indices: 102092508--102092571 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
102092498 CGTTTACAGT
102092508 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
102092539 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
102092570 AA
1 AA
102092572 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:102093871 original size:40 final size:40
Alignment explanation
Indices: 102093826--102093956 Score: 174
Period size: 40 Copynumber: 3.3 Consensus size: 40
102093816 CGGAATATAA
102093826 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
102093866 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
102093906 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
102093946 CCGGATATAAT
1 CCGGATATAAT
102093957 TTCCAGCATA
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 76 0.99
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:102093970 original size:40 final size:40
Alignment explanation
Indices: 102093826--102093992 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
102093816 CGGAATATAA
* ** *
102093826 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAACCAGCACAATTGCCTTCGGGTCTTAGC
*
102093866 CCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATAAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
*** * *
102093906 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATAACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
102093946 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATAACCAGCACAATTGCCTTCGGG-TCTTAGC
102093986 CC-GATAT
1 CCGGATAT
102093993 CATTCAATTT
Statistics
Matches: 105, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
39 7 0.07
40 95 0.90
41 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATAACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:102093976 original size:80 final size:79
Alignment explanation
Indices: 102093842--102093992 Score: 182
Period size: 80 Copynumber: 1.9 Consensus size: 79
102093832 ATAATCACGT
*
102093842 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGAT-TTAGC
102093906 CCGGATATAGCCACTA
65 CC-GATATAGCCACTA
* * ** * *
102093922 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGATTTAG
102093985 CCCGATAT
64 CCCGATAT
102093993 CATTCAATTT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
79 8 0.13
80 52 0.85
81 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGATTTAGCC
CGATATAGCCACTA
Found at i:102101875 original size:40 final size:40
Alignment explanation
Indices: 102101830--102101996 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
102101820 CGGAATATAA
102101830 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
102101870 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
102101910 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
102101950 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
102101989 CCGGATAT
1 CCGGATAT
102101997 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:102110509 original size:40 final size:40
Alignment explanation
Indices: 102110450--102110591 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
102110440 AAATTGAATG
* * *
102110450 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
102110490 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
102110530 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
102110570 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
102110592 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:102110615 original size:40 final size:40
Alignment explanation
Indices: 102110488--102110617 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
102110478 ATGCTGGAAA
* * *
102110488 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
102110528 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
102110568 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
102110608 TTATATCCGG
1 TTATATCCGG
102110618 TTATATTCCG
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 75 0.99
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:102115325 original size:29 final size:29
Alignment explanation
Indices: 102115293--102115427 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
102115283 ATACCCTCCG
** * *
102115293 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
102115322 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
102115351 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
102115380 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
102115409 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
102115428 GATCACCGTA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:102115360 original size:58 final size:58
Alignment explanation
Indices: 102115239--102115428 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
102115229 TACTCGATTT
* * * *** *
102115239 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
102115297 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
102115355 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
102115413 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
102115429 ATCACCGTAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:102118987 original size:80 final size:80
Alignment explanation
Indices: 102118903--102119052 Score: 192
Period size: 80 Copynumber: 1.9 Consensus size: 80
102118893 ATGGTAACCC
* * * * * *
102118903 GCACAAAGGCCTTCGGGACTTAACCCGGATTTCACAATTTGCATAAATGCCTTCGGGTCTTAGCC
1 GCACAAAGGCCTTCGGGACTTAACCAGGATGTAACAACTAGCATAAATGCCTTCGGGACTTAGCC
102118968 CGGATGTAGTCACTA
66 CGGATGTAGTCACTA
** * ** *
102118983 GCACAATTGCCTTCGGGTCTTAACCAGGATGTAATTACTAGCATAAATGTCTTCGGGACTTAGCC
1 GCACAAAGGCCTTCGGGACTTAACCAGGATGTAACAACTAGCATAAATGCCTTCGGGACTTAGCC
102119048 CGGAT
66 CGGAT
102119053 ATCATTCAAT
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 58 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAAGGCCTTCGGGACTTAACCAGGATGTAACAACTAGCATAAATGCCTTCGGGACTTAGCC
CGGATGTAGTCACTA
Found at i:102118994 original size:40 final size:40
Alignment explanation
Indices: 102118903--102119052 Score: 140
Period size: 40 Copynumber: 3.8 Consensus size: 40
102118893 ATGGTAACCC
* * * * * * *
102118903 GCACAAAGGCCTTCGGGACTTAACCCGGATTTCA-CAATTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATC-ACTA
* *
102118943 GCATAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACTA
* * * *
102118983 GCACAATTGCCTTCGGGTCTTAACCAGGATGTAATTACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACTA
* * *
102119023 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
102119053 ATCATTCAAT
Statistics
Matches: 88, Mismatches: 21, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
40 87 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACTA
Found at i:102120841 original size:46 final size:46
Alignment explanation
Indices: 102120714--102120861 Score: 155
Period size: 46 Copynumber: 3.2 Consensus size: 46
102120704 GGCTGTCACA
*
102120714 CAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACT
1 CAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACT
* * * *
102120760 CAACGAG-TCGGATGCCTAGTT-ACATCTC-TCA---AACTCGGATTCAACT
1 CAACGAGTTC--A-GAC-A-TTCGCATC-CATAAGTGAACTCGGACTCAACT
102120806 CAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACT
1 CAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACT
102120852 CAACGAGTTC
1 CAACGAGTTC
102120862 GGATGCCCAA
Statistics
Matches: 81, Mismatches: 9, Indels: 24
0.71 0.08 0.21
Matches are distributed among these distances:
42 3 0.04
43 7 0.09
44 2 0.02
45 3 0.04
46 52 0.64
47 2 0.02
48 2 0.02
49 7 0.09
50 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.23
Consensus pattern (46 bp):
CAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACT
Found at i:102124157 original size:74 final size:74
Alignment explanation
Indices: 102124072--102124219 Score: 287
Period size: 74 Copynumber: 2.0 Consensus size: 74
102124062 TCCAGCCAAG
102124072 TAAAAAAAATGCAATTACTTGTATATAAATAAATATGTGCATTCGGCAGGGTATAATAAAGTGGT
1 TAAAAAAAATGCAATTACTTGTATATAAATAAATATGTGCATTCGGCAGGGTATAATAAAGTGGT
102124137 TGGTAAGTT
66 TGGTAAGTT
*
102124146 TAAAAAAAATGCAATTACTTGTTTATAAATAAATATGTGCATTCGGCAGGGTATAATAAAGTGGT
1 TAAAAAAAATGCAATTACTTGTATATAAATAAATATGTGCATTCGGCAGGGTATAATAAAGTGGT
102124211 TGGTAAGTT
66 TGGTAAGTT
102124220 GATTGAAAAA
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (74 bp):
TAAAAAAAATGCAATTACTTGTATATAAATAAATATGTGCATTCGGCAGGGTATAATAAAGTGGT
TGGTAAGTT
Found at i:102142567 original size:28 final size:28
Alignment explanation
Indices: 102142535--102142603 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
102142525 GCGTAGATCA
102142535 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
* *
102142563 CGAAATTACCCCTAAAGAGCATAATTAT
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
102142591 CGATA-TACCCCTA
1 CGAAATTACCCCTA
102142604 GGGTTTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 8 0.21
28 30 0.79
ACGTcount: A:0.42, C:0.26, G:0.10, T:0.22
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:102144147 original size:26 final size:26
Alignment explanation
Indices: 102144087--102144148 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
102144077 GGCATGCTCA
*
102144087 AACAGTCATACATCACATAGGGGTAT
1 AACAGTCATTCATCACATAGGGGTAT
** * **
102144113 TTCATTCATTCATTTCATAGGGGTAT
1 AACAGTCATTCATCACATAGGGGTAT
102144139 AACAGTCATT
1 AACAGTCATT
102144149 TCATAAATTA
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (26 bp):
AACAGTCATTCATCACATAGGGGTAT
Found at i:102147623 original size:47 final size:48
Alignment explanation
Indices: 102147548--102147690 Score: 218
Period size: 47 Copynumber: 3.0 Consensus size: 48
102147538 GCTTTATCAT
* *
102147548 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
*
102147597 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
102147644 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
102147691 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 45 0.51
48 31 0.35
49 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:102147648 original size:71 final size:72
Alignment explanation
Indices: 102147548--102147689 Score: 225
Period size: 71 Copynumber: 2.0 Consensus size: 72
102147538 GCTTTATCAT
*
102147548 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG
102147613 CCCTTTA
66 CCCTTTA
* * *
102147620 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAA
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
102147683 GCCCTTT
65 GCCCTTT
102147690 TGCACTTCCT
Statistics
Matches: 65, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
71 53 0.82
72 12 0.18
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (72 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG
CCCTTTA
Found at i:102147691 original size:24 final size:24
Alignment explanation
Indices: 102147548--102147690 Score: 218
Period size: 24 Copynumber: 6.0 Consensus size: 24
102147538 GCTTTATCAT
*
102147548 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
102147573 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
102147597 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
102147620 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
102147644 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
102147668 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
102147691 GCACTTCCTC
Statistics
Matches: 112, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:102147762 original size:9 final size:9
Alignment explanation
Indices: 102147748--102147804 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
102147738 ATCTCATGTG
102147748 CATATCATA
1 CATATCATA
*
102147757 CATATCATGTG
1 CATATCA--TA
102147768 CATATCATA
1 CATATCATA
* *
102147777 CATGTCATGTG
1 CATATCA--TA
102147788 CATATCATA
1 CATATCATA
102147797 CATATCAT
1 CATATCAT
102147805 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:102147764 original size:20 final size:20
Alignment explanation
Indices: 102147736--102147806 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
102147726 GCATTTATGA
*
102147736 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
102147756 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
102147776 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
102147796 ACATATCATGT
1 ACATATCATGT
102147807 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:102147771 original size:11 final size:11
Alignment explanation
Indices: 102147741--102147795 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
102147731 TATGAACATC
102147741 TCATGTGCATA
1 TCATGTGCATA
*
102147752 TCA--TACATA
1 TCATGTGCATA
102147761 TCATGTGCATA
1 TCATGTGCATA
* *
102147772 TCA--TACATG
1 TCATGTGCATA
102147781 TCATGTGCATA
1 TCATGTGCATA
102147792 TCAT
1 TCAT
102147796 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:102155691 original size:24 final size:24
Alignment explanation
Indices: 102155640--102155784 Score: 229
Period size: 24 Copynumber: 6.0 Consensus size: 24
102155630 GCTTTATCAT
* *
102155640 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
102155665 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTG
102155689 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
102155713 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
102155737 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
102155761 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
102155785 CACTTCCTCC
Statistics
Matches: 115, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
24 103 0.90
25 12 0.10
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:102155855 original size:9 final size:9
Alignment explanation
Indices: 102155841--102155897 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
102155831 ATCTCATGTG
102155841 CATATCATA
1 CATATCATA
*
102155850 CATATCATGTG
1 CATATCA--TA
102155861 CATATCATA
1 CATATCATA
* *
102155870 CATGTCATGTG
1 CATATCA--TA
102155881 CATATCATA
1 CATATCATA
102155890 CATATCAT
1 CATATCAT
102155898 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:102155857 original size:20 final size:20
Alignment explanation
Indices: 102155829--102155899 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
102155819 GCATTTATGA
*
102155829 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
102155849 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
102155869 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
102155889 ACATATCATGT
1 ACATATCATGT
102155900 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:102155864 original size:11 final size:11
Alignment explanation
Indices: 102155834--102155888 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
102155824 TATGAACATC
102155834 TCATGTGCATA
1 TCATGTGCATA
*
102155845 TCA--TACATA
1 TCATGTGCATA
102155854 TCATGTGCATA
1 TCATGTGCATA
* *
102155865 TCA--TACATG
1 TCATGTGCATA
102155874 TCATGTGCATA
1 TCATGTGCATA
102155885 TCAT
1 TCAT
102155889 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:102158894 original size:43 final size:43
Alignment explanation
Indices: 102158854--102158951 Score: 169
Period size: 43 Copynumber: 2.3 Consensus size: 43
102158844 TAGCCCAGCT
102158854 ATGGTCTTACACGAAATCAAATAATGATGCAAATGTCCCAGAC
1 ATGGTCTTACACGAAATCAAATAATGATGCAAATGTCCCAGAC
* * *
102158897 ATGGTCTTACACGTAATCACATAATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGAAATCAAATAATGATGCAAATGTCCCAGAC
102158940 ATGGTCTTACAC
1 ATGGTCTTACAC
102158952 ATAATCGCAT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCAAATAATGATGCAAATGTCCCAGAC
Found at i:102166515 original size:43 final size:43
Alignment explanation
Indices: 102166361--102166520 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 43
102166351 CAATTCCATA
* * * * * * *
102166361 TCCCAGATATGGTCTTACATGTTATCATATATCAATGCCGATAG
1 TCCCAGACATGGTCTTACATATAATCACATAACGATGCCAAT-G
* * *
102166405 -CCCA-ACTATGGTCTTACATAAAATCAAATAACGATGCTAATG
1 TCCCAGAC-ATGGTCTTACATATAATCACATAACGATGCCAATG
* *
102166447 TCCCAGACATGGTCTTACATGTAATCACATAATGATGCCAATG
1 TCCCAGACATGGTCTTACATATAATCACATAACGATGCCAATG
* * *
102166490 TTCCAGAGATGGTCTTACACATAATCACATA
1 TCCCAGACATGGTCTTACATATAATCACATA
102166521 TCATTAATCC
Statistics
Matches: 95, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 2 0.02
43 91 0.96
44 2 0.02
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.29
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATATAATCACATAACGATGCCAATG
Found at i:102168481 original size:27 final size:26
Alignment explanation
Indices: 102168390--102168490 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 26
102168380 AGCATGGCTG
* ** *
102168390 CCAGAATAGATAATGTAACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
102168416 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
102168444 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* **
102168471 CTAGATTAGATAATTGTGGC
1 CCAGAACAGATAA-TGTGGC
102168491 GTAGTCACCA
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
26 6 0.09
27 42 0.66
28 16 0.25
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:102171969 original size:43 final size:43
Alignment explanation
Indices: 102171902--102172032 Score: 149
Period size: 43 Copynumber: 3.0 Consensus size: 43
102171892 TATATTGTAT
* * *
102171902 AATGCCAACGTCCCAG-ACGTGGTCTTACATGTAATCACATATC
1 AATGCCAACATCCCAGAAAG-GGTCTTACACGTAATCACATATC
* *
102171945 GATGCC-ACTATCCTAGAAAGGGTCTTACACGTAATCACATATC
1 AATGCCAAC-ATCCCAGAAAGGGTCTTACACGTAATCACATATC
* * * *
102171988 AATGCCAACGTCCCAGACATGGTCTTACACATAATCACATATC
1 AATGCCAACATCCCAGAAAGGGTCTTACACGTAATCACATATC
102172031 AA
1 AA
102172033 AAATCCTATG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 2 0.03
43 68 0.92
44 4 0.05
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (43 bp):
AATGCCAACATCCCAGAAAGGGTCTTACACGTAATCACATATC
Found at i:102173503 original size:25 final size:25
Alignment explanation
Indices: 102173475--102173526 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
102173465 TATAAGATTA
* *
102173475 GCCATAAAGGCCTTCTAGATAGTAT
1 GCCACAAAGGCCTTCTAGATAATAT
* *
102173500 GCCACAAAGGCTTTCTGGATAATAT
1 GCCACAAAGGCCTTCTAGATAATAT
102173525 GC
1 GC
102173527 GACAGACTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
GCCACAAAGGCCTTCTAGATAATAT
Found at i:102180148 original size:44 final size:42
Alignment explanation
Indices: 102180059--102180176 Score: 114
Period size: 44 Copynumber: 2.7 Consensus size: 42
102180049 GATTTTTCAT
* *
102180059 GCTATAATCATTCGCACACTTAGTGCCTTAAAGGTTAGCCAAA
1 GCTATAATAATTCGCACACTTAGTGCCTTAAA-GTTAACCAAA
* *
102180102 GCTATAATAATTCCGCACACTTAGTGCCATCTCAA-TTAACCGAA
1 GCTATAATAATT-CGCACACTTAGTGCC-T-TAAAGTTAACCAAA
* *
102180146 GCTAT-CTCGATATCGCACACTTAGTGCCTTA
1 GCTATAAT-AAT-TCGCACACTTAGTGCCTTA
102180177 TATAACCGAA
Statistics
Matches: 63, Mismatches: 7, Indels: 11
0.78 0.09 0.14
Matches are distributed among these distances:
42 1 0.02
43 13 0.21
44 44 0.70
45 2 0.03
46 3 0.05
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (42 bp):
GCTATAATAATTCGCACACTTAGTGCCTTAAAGTTAACCAAA
Found at i:102186534 original size:29 final size:29
Alignment explanation
Indices: 102186472--102186574 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
102186462 GTGACGAGAT
* * *
102186472 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
102186501 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
102186530 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
102186559 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
102186575 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:102193504 original size:29 final size:29
Alignment explanation
Indices: 102193442--102193544 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
102193432 GTGACGAGAT
* * *
102193442 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
102193471 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
102193500 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
102193529 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
102193545 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:102200239 original size:40 final size:39
Alignment explanation
Indices: 102200194--102200400 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
102200184 CGGAATACAA
*
102200194 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
102200234 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
102200274 CCGGATTTAACAACTTGCACGAATG-CTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
102200313 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
102200353 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
102200393 CCGGATAT
1 CCGGATAT
102200401 CATTCAATTG
Statistics
Matches: 140, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
38 1 0.01
39 30 0.21
40 109 0.78
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:102200312 original size:79 final size:80
Alignment explanation
Indices: 102200194--102200399 Score: 238
Period size: 79 Copynumber: 2.6 Consensus size: 80
102200184 CGGAATACAA
* * *
102200194 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAA-CGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGC-ACTAGCACAAAT
*
102200258 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * *
102200274 CCGGATTTAACAACTTGCACGAATG-CTTCGGGTCTTAGCCCGGAT-GTAGTCACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAG-CACTAGCACAAAT
*
102200337 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
102200353 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
102200400 TCATTCAATT
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 2 0.02
79 63 0.59
80 42 0.39
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGCACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:102207098 original size:40 final size:40
Alignment explanation
Indices: 102207052--102207181 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
102207042 CGGAATATAA
102207052 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * ** * *
102207092 TCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
102207132 CCAGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
102207172 CCGGATATAA
1 CCGGATATAA
102207182 TTTCCAGCAT
Statistics
Matches: 70, Mismatches: 19, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
39 1 0.01
40 69 0.99
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:102214245 original size:6 final size:6
Alignment explanation
Indices: 102214234--102214442 Score: 151
Period size: 6 Copynumber: 33.8 Consensus size: 6
102214224 TATCATAACT
* * *
102214234 AGAATC AGAATC AGAATC AGAATT AGAATC AAAATC AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * * * *
102214283 AAAATC AAAACC AGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTATT
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* *
102214332 AGGTAA-C AGAATC AGAATC AGAAAC AGAATC AGAATT AGGTAA-C AGAATC
1 A-G-AATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* *
102214382 AGAATC AGTATC AGGTAA-C AGAATC AGAATC AGTATC AGGTAA-C AGAATC
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
102214432 AGAATC AGAAT
1 AGAATC AGAAT
102214443 ATGAATGCAA
Statistics
Matches: 161, Mismatches: 24, Indels: 36
0.73 0.11 0.16
Matches are distributed among these distances:
5 11 0.07
6 127 0.79
7 15 0.09
8 8 0.05
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:102214325 original size:62 final size:62
Alignment explanation
Indices: 102214275--102214414 Score: 246
Period size: 62 Copynumber: 2.3 Consensus size: 62
102214265 AAATCAGGTG
* *
102214275 ACAGAATCAAAATCA-AAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATTAGGTA
1 ACAGAATCAGAATCAGAAA-CAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTA
102214337 ACAGAATCAGAATCAGAAACAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTA
1 ACAGAATCAGAATCAGAAACAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTA
102214399 ACAGAATCAGAATCAG
1 ACAGAATCAGAATCAG
102214415 TATCAGGTAA
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
62 72 0.96
63 3 0.04
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (62 bp):
ACAGAATCAGAATCAGAAACAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTA
Found at i:102214384 original size:25 final size:25
Alignment explanation
Indices: 102214234--102214442 Score: 159
Period size: 25 Copynumber: 8.4 Consensus size: 25
102214224 TATCATAACT
*
102214234 AGAATCAGAATCA-G-AATCAGAATT
1 AGAATCAGAATCAGGTAA-CAGAATC
* *
102214258 AGAATCAAAATCAGGTGACAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
* * * *
102214283 AAAATCAAAACCA-G-AATCAGAATT
1 AGAATCAGAATCAGGTAA-CAGAATC
* *
102214307 AGGTAA-CAGAATCA-G-AATCAGTATT
1 A-G-AATCAGAATCAGGTAA-CAGAATC
*
102214332 AGGTAA-CAGAATCA-G-AATCAGAAAC
1 A-G-AATCAGAATCAGGTAA-CAGAATC
*
102214357 AGAATCAGAATTAGGTAACAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
*
102214382 AGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
*
102214407 AGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
102214432 AGAATCAGAAT
1 AGAATCAGAAT
102214443 ATGAATGCAA
Statistics
Matches: 158, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
23 3 0.02
24 28 0.18
25 122 0.77
26 5 0.03
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGGTAACAGAATC
Found at i:102214403 original size:19 final size:19
Alignment explanation
Indices: 102214239--102214439 Score: 131
Period size: 19 Copynumber: 10.8 Consensus size: 19
102214229 TAACTAGAAT
102214239 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
* * *
102214256 TTAGAATCAAAATCAGGTGA
1 -CAGAATCAGAATCAGGTAA
* *
102214276 CAGAATCAAAATCA--AAA
1 CAGAATCAGAATCAGGTAA
*
102214293 CCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
102214313 CAGAATCAGAATCAGTATTAGGTAA
1 CAGAATCAGAATC------AGGTAA
*
102214338 CAGAATCAGAATCA-GAAA
1 CAGAATCAGAATCAGGTAA
*
102214356 CAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGGTAA
*
102214375 CAGAATCAGAATCA-GTAT
1 CAGAATCAGAATCAGGTAA
*
102214393 CAG-GT---AA-CA-G-AA
1 CAGAATCAGAATCAGGTAA
*
102214405 TCAGAATCAGTATCAGGTAA
1 -CAGAATCAGAATCAGGTAA
102214425 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
102214440 AATATGAATG
Statistics
Matches: 143, Mismatches: 20, Indels: 39
0.71 0.10 0.19
Matches are distributed among these distances:
12 1 0.01
13 6 0.04
14 3 0.02
17 3 0.02
18 48 0.34
19 58 0.41
20 5 0.03
25 19 0.13
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:102214603 original size:27 final size:26
Alignment explanation
Indices: 102214561--102214612 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
102214551 GTGAGGCTGC
*
102214561 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
102214587 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
102214613 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:102214654 original size:67 final size:67
Alignment explanation
Indices: 102214545--102214698 Score: 290
Period size: 67 Copynumber: 2.3 Consensus size: 67
102214535 CACCACAGAA
*
102214545 ATTGCAGTGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
102214610 AG
66 AG
*
102214612 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACTAGAACAGATATATGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
102214677 AG
66 AG
102214679 ATTGCAGCGAGGCTGCCAGA
1 ATTGCAGCGAGGCTGCCAGA
102214699 ACGCTTCCTC
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 85 1.00
ACGTcount: A:0.31, C:0.21, G:0.29, T:0.19
Consensus pattern (67 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
AG
Found at i:102214981 original size:27 final size:27
Alignment explanation
Indices: 102214924--102215253 Score: 378
Period size: 27 Copynumber: 12.3 Consensus size: 27
102214914 GGGGCAAAAT
* * * *
102214924 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
102214950 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
102214977 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
102215004 AGTAATTTTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
102215031 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
102215058 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
102215085 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
102215112 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
102215139 GGTAATTCTACCTTACTA-GGGTATTTT
1 GGTAATTCTACCCTAC-AGGGGTATTTC
* * * *
102215166 AGTAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* ** * *
102215193 GGTAATTTTA-CAAACTAGGGGTGTTTT
1 GGTAATTCTACCCTAC-AGGGGTATTTC
*
102215220 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
102215247 TGTAATT
1 GGTAATT
102215254 TCACAATCGA
Statistics
Matches: 258, Mismatches: 41, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
26 17 0.07
27 238 0.92
28 3 0.01
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:102215288 original size:27 final size:27
Alignment explanation
Indices: 102215258--102215675 Score: 257
Period size: 27 Copynumber: 15.4 Consensus size: 27
102215248 GTAATTTCAC
* *
102215258 AATCGAGGGTAAAAC-GATAATTTTGTA
1 AATCGAGGGTAAAACAG-TAATTCTATA
* * *
102215285 AATCAAAGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
102215312 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
102215339 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
* ***** * *
102215366 AATCGATGGTACTTTGGAAATT-TTTA
1 AATCGAGGGTAAAACAGTAATTCTATA
**** * *
102215392 CAAGTCGAGGGTATTTTAGTAATTTTACA
1 -AA-TCGAGGGTAAAACAGTAATTCTATA
* **** * *
102215421 AATCAGGGGGTATTTTAGTAATTTTACA
1 AATC-GAGGGTAAAACAGTAATTCTATA
* **** * *
102215449 AA-CCAGGGGTATTTTAGTAATTTTGTA
1 AATCGA-GGGTAAAACAGTAATTCTATA
** **
102215476 AATTTAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
* * *
102215503 AATCGAGGGTAGAACGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
* * *
102215530 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
* * * *
102215557 ATTCGAGGGTAAAATAGTAACTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
* * *
102215584 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
** *
102215611 AATTAAGGGTAAAACAGTAATTCCATA
1 AATCGAGGGTAAAACAGTAATTCTATA
** * *
102215638 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
102215665 AATCGAGGGTA
1 AATCGAGGGTA
102215676 CTTTGATAAT
Statistics
Matches: 323, Mismatches: 61, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.01
27 274 0.85
28 44 0.14
29 2 0.01
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTATA
Found at i:102215368 original size:81 final size:81
Alignment explanation
Indices: 102215258--102215675 Score: 336
Period size: 81 Copynumber: 5.1 Consensus size: 81
102215248 GTAATTTCAC
* *
102215258 AATCGAGGGTAAAAC-GATAATTTTGTAAATCAAAGGTAAAACAGTAATTCTGTAAATCGAGGGT
1 AATCGAGGGTAAAACAG-TAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGT
*
102215322 AAAACAGTAATTCTATA
65 AAAATAGTAATTCTATA
* * * * *** * * *
102215339 AATCGAGGGTAAAACAGTAATTCTATAAATCGATGGTACTTTGGAAATT-TTTACAAGTCGAGGG
1 AATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTA-AA-TCGAGGG
*** * *
102215403 TATTTTAGTAATTTTACA
64 TAAAATAGTAATTCTATA
* **** ** * * *** * **
102215421 AATCAGGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTGTAAATTTAGGGT
1 AATC-GAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGT
*
102215486 AAAATGGTAATTCTATA
65 AAAATAGTAATTCTATA
* * * * * *
102215503 AATCGAGGGTAGAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAATTCGAGGGTA
1 AATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTA
* *
102215568 AAATAGTAACTCTGTA
66 AAATAGTAATTCTATA
* * * **
102215584 AATCGAGGGTAAAATAGTAATTTTGTAAATTAAGGGTAAAACAGTAATTCCATAAATCGAGGGTA
1 AATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTA
* * *
102215649 AAATGGTAATTTTGTA
66 AAATAGTAATTCTATA
102215665 AATCGAGGGTA
1 AATCGAGGGTA
102215676 CTTTGATAAT
Statistics
Matches: 257, Mismatches: 75, Indels: 10
0.75 0.22 0.03
Matches are distributed among these distances:
80 3 0.01
81 173 0.67
82 45 0.18
83 33 0.13
84 3 0.01
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (81 bp):
AATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCGAGGGTA
AAATAGTAATTCTATA
Found at i:102215404 original size:28 final size:27
Alignment explanation
Indices: 102215368--102215449 Score: 74
Period size: 28 Copynumber: 3.0 Consensus size: 27
102215358 ATTCTATAAA
* *
102215368 TCGATGGTACTTTGGAAATTTTTACAAG
1 TCGAGGGTACTTTAGAAA-TTTTACAAG
* * *
102215396 TCGAGGGTATTTTAGTAATTTTACAAA
1 TCGAGGGTACTTTAGAAATTTTACAAG
* * *
102215423 TCAGGGGGTATTTTAGTAATTTTACAA
1 TC-GAGGGTACTTTAGAAATTTTACAA
102215450 ACCAGGGGTA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 10 0.21
28 37 0.79
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
TCGAGGGTACTTTAGAAATTTTACAAG
Found at i:102215424 original size:55 final size:55
Alignment explanation
Indices: 102215354--102215472 Score: 125
Period size: 55 Copynumber: 2.2 Consensus size: 55
102215344 AGGGTAAAAC
* * * * **
102215354 AGTAATTCTATAAATC-GATGGTACTTTGGAAATTTTTACAAGTC-GAGGGTATTTT
1 AGTAATTTTACAAATCAGAGGGTACTTTAGAAA-TTTTACAAACCAG-GGGTATTTT
* * *
102215409 AGTAATTTTACAAATCAGGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTT
1 AGTAATTTTACAAATCAGAGGGTACTTTAGAAATTTTACAAACCAGGGGTATTTT
102215464 AGTAATTTT
1 AGTAATTTT
102215473 GTAAATTTAG
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
55 41 0.77
56 12 0.23
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (55 bp):
AGTAATTTTACAAATCAGAGGGTACTTTAGAAATTTTACAAACCAGGGGTATTTT
Found at i:102215685 original size:27 final size:27
Alignment explanation
Indices: 102215655--102215825 Score: 100
Period size: 27 Copynumber: 6.2 Consensus size: 27
102215645 GGTAAAATGG
*
102215655 TAATTTTGTAAATCGAGGGTACTTT-GA
1 TAATTTTATAAATCGAGGGTA-TTTCGA
* ** *
102215682 TAATTTTACATGTCGAGGGTAATATTTCAA
1 TAATTTTATAAATCGAGGG---TATTTCGA
* *
102215712 TAATTTT-TGTAAGCTGAGGGTATTTCGA
1 TAATTTTAT-AAATC-GAGGGTATTTCGA
* * * *
102215740 TAATTTTACAAATCGAGGATATTTGGG
1 TAATTTTATAAATCGAGGGTATTTCGA
* *
102215767 TAATTTTATAAATCGAGGGTGCTTT-GG
1 TAATTTTATAAATCGAGGGT-ATTTCGA
* *
102215794 TAATTTTA-CAATTGAGGGTATTTC-A
1 TAATTTTATAAATCGAGGGTATTTCGA
102215819 GTAATTT
1 -TAATTT
102215826 GGTAAAGTAT
Statistics
Matches: 110, Mismatches: 24, Indels: 21
0.71 0.15 0.14
Matches are distributed among these distances:
25 3 0.03
26 15 0.14
27 53 0.48
28 20 0.18
29 3 0.03
30 11 0.10
31 5 0.05
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
TAATTTTATAAATCGAGGGTATTTCGA
Found at i:102215686 original size:54 final size:54
Alignment explanation
Indices: 102215258--102215675 Score: 297
Period size: 54 Copynumber: 7.7 Consensus size: 54
102215248 GTAATTTCAC
* * * **
102215258 AATCGAGGGTAAAA-CGATAATTTTGTAAATCAAAGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATAG-TAATTTTGTAAATCGAGGGTAAATGAGTAATTCTGTA
* * * ** *
102215312 AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAATGAGTAATTCTGTA
* *** * * ** * * **
102215366 AATCGATGGTACTTTGGAAATTTT-TACAAGTCGAGGGTATTTTAGTAATTTTACA
1 AATCGAGGGTAAAATAGTAATTTTGTA-AA-TCGAGGGTAAATGAGTAATTCTGTA
* *** ** * ** * *
102215421 AATCAGGGGGTATTTTAGTAATTTTACAAA-CCAGGGGTATTTTAGTAATTTTGTA
1 AATC-GAGGGTAAAATAGTAATTTTGTAAATCGA-GGGTAAATGAGTAATTCTGTA
** * * * *
102215476 AATTTAGGGTAAAATGGTAATTCTATAAATCGAGGGTAGAACG-GTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTA-AATGAGTAATTCTGTA
* *
102215530 AATCGAGGGTAAAATAGTAATTTTGTAATTCGAGGGTAAAAT-AGTAACTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGT-AAATGAGTAATTCTGTA
** ** **
102215584 AATCGAGGGTAAAATAGTAATTTTGTAAATTAAGGGTAAAACAGTAATTCCATA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAATGAGTAATTCTGTA
*
102215638 AATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTA
102215676 CTTTGATAAT
Statistics
Matches: 291, Mismatches: 62, Indels: 22
0.78 0.17 0.06
Matches are distributed among these distances:
53 5 0.02
54 219 0.75
55 49 0.17
56 17 0.06
57 1 0.00
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (54 bp):
AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAATGAGTAATTCTGTA
Found at i:102215822 original size:26 final size:26
Alignment explanation
Indices: 102215727--102215825 Score: 101
Period size: 27 Copynumber: 3.7 Consensus size: 26
102215717 TTTGTAAGCT
*
102215727 GAGGGTATTTCGATAATTTTACAAATC
1 GAGGGTATTTCGGTAATTTTAC-AATC
* * *
102215754 GAGGATATTTGGGTAATTTTATAAATC
1 GAGGGTATTTCGGTAATTTTA-CAATC
* *
102215781 GAGGGTGCTTT-GGTAATTTTACAATT
1 GAGGGT-ATTTCGGTAATTTTACAATC
*
102215807 GAGGGTATTTCAGTAATTT
1 GAGGGTATTTCGGTAATTT
102215826 GGTAAAGTAT
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
25 3 0.05
26 16 0.27
27 37 0.63
28 3 0.05
ACGTcount: A:0.29, C:0.07, G:0.23, T:0.40
Consensus pattern (26 bp):
GAGGGTATTTCGGTAATTTTACAATC
Found at i:102218521 original size:40 final size:40
Alignment explanation
Indices: 102218464--102218689 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
102218454 TCGAATGATG
* * * *
102218464 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
102218504 TCCGGACTAAGATCCGAAGGTATTCGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
102218544 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
102218584 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** * *
102218624 TCCGGGTTAAG-TCCCGAAGGCATCTGTACGAGTTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
102218665 T-CGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGACTAAGAT-CCGAAGGCATTTG
102218690 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 156 0.93
41 10 0.06
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:102218696 original size:80 final size:80
Alignment explanation
Indices: 102218498--102218722 Score: 237
Period size: 80 Copynumber: 2.8 Consensus size: 80
102218488 GTGCTAAGTG
* * * ** **
102218498 ACTATATCCGGACTAAGATCCGAAGGTATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
1 ACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGATCCGAAG
* *
102218563 GCATTTGTGCGAGTT
66 GCATCTGTACGAGTT
**
102218578 ACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAA
1 ACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGAT-CCGAA
102218642 GGCATCTGTACGAGTT
65 GGCATCTGTACGAGTT
* * *
102218658 ACTATAAT-CGGGCTATG-TCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCC
1 ACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAGA-TCC
102218718 GAAGG
62 GAAGG
102218723 TACGTGATTC
Statistics
Matches: 127, Mismatches: 12, Indels: 13
0.84 0.08 0.09
Matches are distributed among these distances:
79 17 0.13
80 107 0.84
81 3 0.02
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (80 bp):
ACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGATCCGAAG
GCATCTGTACGAGTT
Found at i:102221061 original size:6 final size:6
Alignment explanation
Indices: 102221050--102221295 Score: 162
Period size: 6 Copynumber: 39.8 Consensus size: 6
102221040 TATCATAACT
* * * *
102221050 AGAATC AGAATC AGAATC AGAATT AGAATC AAAAGC AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * * * *
102221099 AAAATC AAAACC AGAATC AGAATT AGGCAA-C AGAATC AGAATC AGTATT
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* *
102221148 AGGAAAC AGAATC AGAATC AGAAAC AGAATC AGAATC AGGTAA-C AGAATC
1 A-GAATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* * * * *
102221198 AGAATC AGTATC AGGTAA-C AGAATC AGAACC AGAACC AGAATC AAAATT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC AGAATC
* *
102221247 AGGTAA-C AGAATC AAAATC AGTATC AGGTAAT- AGAATC AGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
102221296 ATGAATGCAA
Statistics
Matches: 187, Mismatches: 34, Indels: 38
0.72 0.13 0.15
Matches are distributed among these distances:
5 11 0.06
6 149 0.80
7 17 0.09
8 10 0.05
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:102221062 original size:18 final size:18
Alignment explanation
Indices: 102221050--102221295 Score: 162
Period size: 19 Copynumber: 13.3 Consensus size: 18
102221040 TATCATAACT
102221050 AGAATCAGAATCAGAATC
1 AGAATCAGAATCAGAATC
* * *
102221068 AGAATTAGAATCAAAAGC
1 AGAATCAGAATCAGAATC
* *
102221086 AG-GTGACAGAATCAAAATC
1 AGAAT--CAGAATCAGAATC
* * *
102221105 AAAACCAGAATCAGAATT
1 AGAATCAGAATCAGAATC
102221123 AGGCAA-CAGAATCAGAATC
1 A-G-AATCAGAATCAGAATC
* * *
102221142 AGTATTAGGAAACAGAATC
1 AGAATCA-GAATCAGAATC
*
102221161 AGAATCAGAAACAGAATC
1 AGAATCAGAATCAGAATC
102221179 AGAATCAGGTAA-CAGAATC
1 AGAATCA-G-AATCAGAATC
*
102221198 AGAATCAGTATCAGGTAA-C
1 AGAATCAGAATCA-G-AATC
* *
102221217 AGAATCAGAACCAGAACC
1 AGAATCAGAATCAGAATC
* *
102221235 AGAATCAAAATTAGGTAA-C
1 AGAATCAGAATCA-G-AATC
* *
102221254 AGAATCAAAATCAGTATC
1 AGAATCAGAATCAGAATC
102221272 AGGTAAT-AGAATCAGAATC
1 A-G-AATCAGAATCAGAATC
102221291 AGAAT
1 AGAAT
102221296 ATGAATGCAA
Statistics
Matches: 182, Mismatches: 28, Indels: 37
0.74 0.11 0.15
Matches are distributed among these distances:
17 9 0.05
18 68 0.37
19 94 0.52
20 11 0.06
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.17
Consensus pattern (18 bp):
AGAATCAGAATCAGAATC
Found at i:102221097 original size:37 final size:37
Alignment explanation
Indices: 102221055--102221183 Score: 100
Period size: 37 Copynumber: 3.5 Consensus size: 37
102221045 TAACTAGAAT
**
102221055 CAGAATCAGAATCAGAATTAGAATCAAAAGCAGGTGA
1 CAGAATCAGAATCAGAATTAGAATCAAAAGCAGGCAA
* * ** * **
102221092 CAGAATCAAAATCAAAACCAGAATCAGAATTAGGCAA
1 CAGAATCAGAATCAGAATTAGAATCAAAAGCAGGCAA
* * * *
102221129 CAGAATCAGAATCAGTATTAGGAAACAGAATCA-G-AA
1 CAGAATCAGAATCAGAATTA-GAATCAAAAGCAGGCAA
*
102221165 TCAGAAACAGAATCAGAAT
1 -CAGAATCAGAATCAGAAT
102221184 CAGGTAACAG
Statistics
Matches: 72, Mismatches: 18, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
36 2 0.03
37 60 0.83
38 10 0.14
ACGTcount: A:0.51, C:0.16, G:0.18, T:0.16
Consensus pattern (37 bp):
CAGAATCAGAATCAGAATTAGAATCAAAAGCAGGCAA
Found at i:102221140 original size:25 final size:24
Alignment explanation
Indices: 102221110--102221295 Score: 139
Period size: 25 Copynumber: 7.5 Consensus size: 24
102221100 AAATCAAAAC
*
102221110 CAGAATCAGAATTAGGCAACAGAAT
1 CAGAATCAGAATCAGG-AACAGAAT
* *
102221135 CAGAATCAGTATTAGGAAACAGAAT
1 CAGAATCAGAATCAGG-AACAGAAT
*
102221160 CAGAATCAGAAACA-GAATCAGAAT
1 CAGAATCAGAATCAGGAA-CAGAAT
*
102221184 CAGGTAA-CAGAATCA-GAATCAGTAT
1 CA-G-AATCAGAATCAGGAA-CAGAAT
*
102221209 CAGGTAA-CAGAATCA-GAACCAGAAC
1 CA-G-AATCAGAATCAGGAA-CAGAAT
* *
102221234 CAGAATCAAAATTAGGTAACAGAAT
1 CAGAATCAGAATCAGG-AACAGAAT
* * *
102221259 CAAAATCAGTATCAGGTAATAGAAT
1 CAGAATCAGAATCAGG-AACAGAAT
102221284 CAGAATCAGAAT
1 CAGAATCAGAAT
102221296 ATGAATGCAA
Statistics
Matches: 135, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
23 4 0.03
24 16 0.12
25 111 0.82
26 4 0.03
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.17
Consensus pattern (24 bp):
CAGAATCAGAATCAGGAACAGAAT
Found at i:102221193 original size:37 final size:37
Alignment explanation
Indices: 102221129--102221241 Score: 122
Period size: 37 Copynumber: 3.1 Consensus size: 37
102221119 AATTAGGCAA
* * *
102221129 CAGAATCAGAATCAGTATTAGGAAACAGAATCAGAAT
1 CAGAAACAGAATCAGAATCAGGAAACAGAATCAGAAT
*
102221166 CAGAAACAGAATCAGAATCAGGTAACAGAATCAGAAT
1 CAGAAACAGAATCAGAATCAGGAAACAGAATCAGAAT
* * * *
102221203 CAGTATCAGGTAA-CAGAATCA-GAACCAGAACCAGAAT
1 CAGAAACA-G-AATCAGAATCAGGAAACAGAATCAGAAT
102221240 CA
1 CA
102221242 AAATTAGGTA
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
37 54 0.83
38 9 0.14
39 2 0.03
ACGTcount: A:0.49, C:0.18, G:0.19, T:0.15
Consensus pattern (37 bp):
CAGAAACAGAATCAGAATCAGGAAACAGAATCAGAAT
Found at i:102221232 original size:62 final size:62
Alignment explanation
Indices: 102221050--102221294 Score: 307
Period size: 62 Copynumber: 4.0 Consensus size: 62
102221040 TATCATAACT
* ** * * *
102221050 AGAATCAGAATCA-G-AATCAGAATTAGAATCAAAAGCAGGTGACAGAATCAAAATCA-AAACC
1 AGAATCAGAATCAGGTAA-CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAA-C
* * * *
102221111 AGAATCAGAATTAGGCAACAGAATCAGAATCAGTATTAGGAAACAGAATCAGAATCAGAAAC
1 AGAATCAGAATCAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAAC
* *
102221173 AGAATCAGAATCAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATCAGAACCAGAACC
1 AGAATCAGAATCAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAAC
* * * *
102221235 AGAATCAAAATTAGGTAACAGAATCAAAATCAGTATCAGGTAATAGAATCAGAATCAGAA
1 AGAATCAGAATCAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
102221295 TATGAATGCA
Statistics
Matches: 161, Mismatches: 20, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
61 12 0.07
62 144 0.89
63 5 0.03
ACGTcount: A:0.50, C:0.16, G:0.18, T:0.16
Consensus pattern (62 bp):
AGAATCAGAATCAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAAC
Found at i:102221251 original size:37 final size:38
Alignment explanation
Indices: 102221152--102221260 Score: 111
Period size: 37 Copynumber: 2.9 Consensus size: 38
102221142 AGTATTAGGA
*
102221152 AACAGAATCAGAATCAGAAA-CA-G-AATCAGAATCAGGT
1 AACAGAACCAGAATCA-AAATCAGGTAA-CAGAATCAGGT
* **
102221189 AACAGAATCAGAATCAGTATCAGGTAACAGAATCA-G-
1 AACAGAACCAGAATCAAAATCAGGTAACAGAATCAGGT
*
102221225 AACCAGAACCAGAATCAAAATTAGGTAACAGAATCA
1 AA-CAGAACCAGAATCAAAATCAGGTAACAGAATCA
102221261 AAATCAGTAT
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
36 3 0.05
37 48 0.77
38 9 0.15
39 2 0.03
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.15
Consensus pattern (38 bp):
AACAGAACCAGAATCAAAATCAGGTAACAGAATCAGGT
Found at i:102221456 original size:27 final size:26
Alignment explanation
Indices: 102221414--102221465 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
102221404 GCGAGGCTGC
*
102221414 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
102221440 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
102221466 TTGTAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:102221511 original size:67 final size:67
Alignment explanation
Indices: 102221398--102221551 Score: 290
Period size: 67 Copynumber: 2.3 Consensus size: 67
102221388 CACCACAGAA
102221398 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
102221463 AG
66 AG
*
102221465 ATTGTAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
102221530 AG
66 AG
*
102221532 ATTGCAACGAGGCTGCCAGA
1 ATTGCAGCGAGGCTGCCAGA
102221552 ACGCTTCCTC
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 84 1.00
ACGTcount: A:0.31, C:0.22, G:0.29, T:0.18
Consensus pattern (67 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
AG
Found at i:102221523 original size:27 final size:26
Alignment explanation
Indices: 102221481--102221532 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
102221471 GCGAGGCTGC
*
102221481 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
102221507 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
102221533 TTGCAACGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:102221834 original size:27 final size:27
Alignment explanation
Indices: 102221804--102222052 Score: 297
Period size: 27 Copynumber: 9.2 Consensus size: 27
102221794 AGGTATCTCG
*
102221804 GTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
* *
102221831 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTA
* **
102221858 ATAATTCTACCCTACAGGGGTA-TTGC
1 GTAATTCTACCCTACAGGGGTATTTTA
*
102221884 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTTA
**
102221912 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTA
102221939 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
* *
102221966 GTAATTCTACCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTA
* ** * *
102221993 GTAATTTTA-CAAACTAGGGGTGTTTTG
1 GTAATTCTACCCTAC-AGGGGTATTTTA
*
102222020 GTAATTCTACCCTATAGGGGTATTTCT-
1 GTAATTCTACCCTACAGGGGTATTT-TA
102222047 GTAATT
1 GTAATT
102222053 TCACAATCGA
Statistics
Matches: 192, Mismatches: 25, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
26 5 0.03
27 181 0.94
28 6 0.03
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTTA
Found at i:102221864 original size:54 final size:54
Alignment explanation
Indices: 102221776--102222052 Score: 317
Period size: 54 Copynumber: 5.1 Consensus size: 54
102221766 AGGGGCAAAA
* * * * * *
102221776 TGGTAATTTTACCCCACA-AGGTATCTCGGTAATTCCACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
* * * *
102221829 TAGTAATTCTACCTTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTG
1 TGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
* *
102221883 CGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
* * *
102221937 CGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
* ** * ** *
102221991 TGGTAATTTTA-CAAACTAGGGGTGTTTTGGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTAC-AGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
102222045 CT-GTAATT
1 -TGGTAATT
102222053 TCACAATCGA
Statistics
Matches: 194, Mismatches: 27, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
53 17 0.09
54 176 0.91
55 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (54 bp):
TGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
Found at i:102221897 original size:81 final size:81
Alignment explanation
Indices: 102221777--102222043 Score: 317
Period size: 81 Copynumber: 3.3 Consensus size: 81
102221767 GGGGCAAAAT
* * * *
102221777 GGTAATTTTACCCCACA-AGGTATCTCG-GTAATTCCACCCTACAGGGGTATTTTAGTAATTCTA
1 GGTAATTCTACCCTACAGGGGTAT-TCGAGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTA
*
102221840 CCTTACAGGGGTATTTC
65 CCATACAGGGGTATTTC
** *
102221857 AATAATTCTACCCTACAGGGGTATTGCGA-TAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
1 GGTAATTCTACCCTACAGGGGTATT-CGAGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTA
*
102221921 CCCTACAGGGGTATTTC
65 CCATACAGGGGTATTTC
** * * *
102221938 GGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTTGGTAATTTTA-
1 GGTAATTCTACCCTACAGGGGTATTCGAGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTAC
* * *
102222002 CAAACTAGGGGTGTTTT
66 CATAC-AGGGGTATTTC
*
102222019 GGTAATTCTACCCTATAGGGGTATT
1 GGTAATTCTACCCTACAGGGGTATT
102222044 TCTGTAATTT
Statistics
Matches: 161, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
80 18 0.11
81 143 0.89
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (81 bp):
GGTAATTCTACCCTACAGGGGTATTCGAGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTAC
CATACAGGGGTATTTC
Found at i:102222094 original size:27 final size:27
Alignment explanation
Indices: 102222057--102222419 Score: 187
Period size: 27 Copynumber: 13.4 Consensus size: 27
102222047 GTAATTTCAC
* *
102222057 AATCGAGGGTAAAAC-GATAATTTTGTA
1 AATCAAGGGTAAAACAG-TAATTCTGTA
*
102222084 ATTCAAGGGTAAAACAGTAATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* * *
102222111 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* * ***** * *
102222138 AATCGATGGTACTTTGGAAATT-TTTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* *** * **
102222164 CAAGTCGAGGGTATTTCAGTAATTTTACA
1 -AA-TCAAGGGTAAAACAGTAATTCTGTA
* **** *
102222193 AATCAGGGGGTATTTTAGTAATTTTGTA
1 AATCA-AGGGTAAAACAGTAATTCTGTA
* ** *
102222221 AATTGAA-GGTAAAATGGTAATTCTATA
1 AA-TCAAGGGTAAAACAGTAATTCTGTA
* *
102222248 AATCGAGGGTAGAACAGTAATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* * *
102222275 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* * *
102222302 ATTCGAGGGTAAAATAGTAACTT-TGTA
1 AATCAAGGGTAAAACAGTAA-TTCTGTA
* * *
102222329 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* *
102222356 AATTAAGGGTAAAACAGTAATTCTATA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* ** *
102222383 AAT-GAGGGTAAAATGGTAATTTTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
*
102222409 AATCGAGGGTA
1 AATCAAGGGTA
102222420 CTTTGATAAT
Statistics
Matches: 271, Mismatches: 55, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
26 28 0.10
27 199 0.73
28 40 0.15
29 4 0.01
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.33
Consensus pattern (27 bp):
AATCAAGGGTAAAACAGTAATTCTGTA
Found at i:102222132 original size:54 final size:54
Alignment explanation
Indices: 102222057--102222419 Score: 322
Period size: 54 Copynumber: 6.7 Consensus size: 54
102222047 GTAATTTCAC
* * *
102222057 AATCGAGGGTAAAA-CGATAATTTTGTAATTCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATAG-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
* * * ***** * *
102222111 AATCGAGGGTAAAATAGTAATTCTATAAATCGATGGTACTTTGGAAATT-TTTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
** ** * **** *
102222164 CAAGTCGAGGGT-ATTTCAGTAATTTTACAAATCAGGGGGTATTTTAGTAATTTTGTA
1 -AA-TCGAGGGTAAAAT-AGTAATTTTGTAAATC-GAGGGTAAAACAGTAATTCTGTA
* * * * * *
102222221 AATTGAAGGTAAAATGGTAATTCTATAAATCGAGGGTAGAACAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
* *
102222275 AATCGAGGGTAAAATAGTAATTTTGTAATTCGAGGGTAAAATAGTAACTT-TGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAA-TTCTGTA
** *
102222329 AATCGAGGGTAAAATAGTAATTTTGTAAATTAAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
*
102222383 AAT-GAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTA
102222420 CTTTGATAAT
Statistics
Matches: 248, Mismatches: 52, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
53 36 0.15
54 148 0.60
55 44 0.18
56 17 0.07
57 3 0.01
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.33
Consensus pattern (54 bp):
AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
Found at i:102222187 original size:28 final size:29
Alignment explanation
Indices: 102222156--102222217 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 29
102222146 GTACTTTGGA
*
102222156 AATTTTTACAAGTC-GAGGGTATTTCAGT
1 AATTTTTACAAATCAGAGGGTATTTCAGT
* *
102222184 AA-TTTTACAAATCAGGGGGTATTTTAGT
1 AATTTTTACAAATCAGAGGGTATTTCAGT
102222212 AATTTT
1 AATTTT
102222218 GTAAATTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 10 0.34
28 16 0.55
29 3 0.10
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (29 bp):
AATTTTTACAAATCAGAGGGTATTTCAGT
Found at i:102222313 original size:81 final size:80
Alignment explanation
Indices: 102222057--102222419 Score: 341
Period size: 81 Copynumber: 4.5 Consensus size: 80
102222047 GTAATTTCAC
* * * *
102222057 AATCGAGGGTAAAACGATAATTTTGTAATTCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAA-TTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
102222122 AAATAGTAATTCTATA
65 AAATAGTAATTCTATA
* *** * * *** * ** *
102222138 AATCGATGGTACTTTGGAAATTTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAATCAGGGGG
1 AATCGAGGGTAAAATGGTAATTTGTA-AA-TCGAGGGTAAAACAGTAATTCTGTAAATC-GAGGG
*** * *
102222203 TATTTTAGTAATTTTGTA
63 TAAAATAGTAATTCTATA
* * * *
102222221 AATTGAAGGTAAAATGGTAATTCTATAAATCGAGGGTAGAACAGTAATTCTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATT-TGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
* *
102222286 AAATAGTAATTTTGTA
65 AAATAGTAATTCTATA
* * * * **
102222302 ATTCGAGGGTAAAATAGTAACTTTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATTAAGGGTA
1 AATCGAGGGTAAAATGGTAA-TTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
*
102222367 AAACAGTAATTCTATA
65 AAATAGTAATTCTATA
102222383 AAT-GAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAA-TTTGTAAATCGAGGGTA
102222420 CTTTGATAAT
Statistics
Matches: 222, Mismatches: 55, Indels: 11
0.77 0.19 0.04
Matches are distributed among these distances:
80 37 0.17
81 100 0.45
82 47 0.21
83 35 0.16
84 3 0.01
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.33
Consensus pattern (80 bp):
AATCGAGGGTAAAATGGTAATTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAA
AATAGTAATTCTATA
Found at i:102222429 original size:27 final size:26
Alignment explanation
Indices: 102222373--102222566 Score: 124
Period size: 27 Copynumber: 7.2 Consensus size: 26
102222363 GGTAAAACAG
* ** *
102222373 TAATTCTATAAAT-GAGGGTAAAATGG
1 TAATTTTATAAATCGAGGGT-ATTTGA
*
102222399 TAATTTTGTAAATCGAGGGTACTTTGA
1 TAATTTTATAAATCGAGGGTA-TTTGA
* ** *
102222426 TAATTTTACATGTCGAGGGTATTTCA
1 TAATTTTATAAATCGAGGGTATTTGA
*
102222452 GTAATTTTTGTAAA-CTGAGGGTATTTCGA
1 -TAA-TTTTATAAATC-GAGGGTATTT-GA
* * *
102222481 TAATTTTACAAATCGAGGATATTTGGG
1 TAATTTTATAAATCGAGGGTATTT-GA
* *
102222508 TAATTTTATAAATCGAGGGTGCTTTGG
1 TAATTTTATAAATCGAGGGT-ATTTGA
* * *
102222535 TAATTTTACAACT-GAGGGTATTTCA
1 TAATTTTATAAATCGAGGGTATTTGA
102222560 GTAATTT
1 -TAATTT
102222567 GGTAAACTAA
Statistics
Matches: 131, Mismatches: 28, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
25 3 0.02
26 28 0.21
27 77 0.59
28 22 0.17
29 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.40
Consensus pattern (26 bp):
TAATTTTATAAATCGAGGGTATTTGA
Found at i:102222473 original size:55 final size:54
Alignment explanation
Indices: 102222398--102222572 Score: 212
Period size: 55 Copynumber: 3.2 Consensus size: 54
102222388 GGGTAAAATG
**
102222398 GTAATTTTGTAAATCGAGGGTACTTTGATAATTTTACATGTCGAGGGTATTTCA
1 GTAATTTTGTAAATCGAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTCA
* **
102222452 GTAATTTTTGTAAA-CTGAGGGTA-TTTCGATAATTTTACAAATCGAGGATATTTGG
1 GTAA-TTTTGTAAATC-GAGGGTACTTT-GATAATTTTACAAATCGAGGGTATTTCA
* * * *
102222507 GTAATTTTATAAATCGAGGGTGCTTTGGTAATTTTACAACT-GAGGGTATTTCA
1 GTAATTTTGTAAATCGAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTCA
*
102222560 GTAATTTGGTAAA
1 GTAATTTTGTAAA
102222573 CTAAAGTATT
Statistics
Matches: 102, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
53 20 0.20
54 35 0.34
55 47 0.46
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTACTTTGATAATTTTACAAATCGAGGGTATTTCA
Found at i:102224532 original size:6 final size:6
Alignment explanation
Indices: 102224521--102224766 Score: 155
Period size: 6 Copynumber: 39.8 Consensus size: 6
102224511 TATCATAACT
* * *
102224521 AGAATC AGAATC AGAATC AGAATT AGAATC AAAATC AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * * * *
102224570 AAAATC AAAACC AGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTATT
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* *
102224619 AGGTAA-C AGAATC AGAATC AGAAAC AGAATC AGAATT AGGTAA-C AGAATC
1 A-G-AATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* * * * * *
102224669 AGAATT AGTATC AGGTAA-C AGAATC AGAACC AGAACC AGAATC AAAATT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC AGAATC
*
102224718 AGGTAA-C AGAATC AGAATC AGTATC AGGTAA-C AGAATC AGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
102224767 ATGAATGCAA
Statistics
Matches: 187, Mismatches: 32, Indels: 42
0.72 0.12 0.16
Matches are distributed among these distances:
5 13 0.07
6 148 0.79
7 16 0.09
8 10 0.05
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:102224611 original size:25 final size:25
Alignment explanation
Indices: 102224581--102224766 Score: 154
Period size: 25 Copynumber: 7.5 Consensus size: 25
102224571 AAATCAAAAC
*
102224581 CAGAATCAGAATTAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
* *
102224606 CAGAATCAGTATTAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
*
102224631 CAGAATCAGAAACA-G-AATCAGAAT
1 CAGAATCAGAATCAGGTAA-CAGAAT
* * *
102224655 TAGGTAA-CAGAATCA-G-AATTAGTAT
1 CA-G-AATCAGAATCAGGTAA-CAGAAT
*
102224680 CAGGTAA-CAGAATCA-G-AACCAGAAC
1 CA-G-AATCAGAATCAGGTAA-CAGAAT
* *
102224705 CAGAATCAAAATTAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
*
102224730 CAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
102224755 CAGAATCAGAAT
1 CAGAATCAGAAT
102224767 ATGAATGCAA
Statistics
Matches: 135, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
23 4 0.03
24 15 0.11
25 112 0.83
26 4 0.03
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGGTAACAGAAT
Found at i:102224612 original size:62 final size:62
Alignment explanation
Indices: 102224562--102224762 Score: 332
Period size: 62 Copynumber: 3.2 Consensus size: 62
102224552 AAATCAGGTG
* *
102224562 ACAGAATCAAAATCAAAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATTAGGTA
1 ACAGAATCAGAATCAAAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTA
*
102224624 ACAGAATCAGAATCAGAAA-CAGAATCAGAATTAGGTAACAGAATCAGAATTAGTATCAGGTA
1 ACAGAATCAGAATCA-AAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTA
* * *
102224686 ACAGAATCAGAACCAGAACCAGAATCAAAATTAGGTAACAGAATCAGAATCAGTATCAGGTA
1 ACAGAATCAGAATCAAAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTA
102224748 ACAGAATCAGAATCA
1 ACAGAATCAGAATCA
102224763 GAATATGAAT
Statistics
Matches: 129, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
61 2 0.02
62 124 0.96
63 3 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.18
Consensus pattern (62 bp):
ACAGAATCAGAATCAAAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTA
Found at i:102224765 original size:62 final size:62
Alignment explanation
Indices: 102224528--102224763 Score: 85
Period size: 62 Copynumber: 3.8 Consensus size: 62
102224518 ACTAGAATCA
** * * * * ** *
102224528 GAATCAGAATCAGAATTAGAATCAAAATCAGGTGACAGAATCAAAATCAAAACCA-G-AATCA
1 GAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAA-CA
* * * * *
102224589 GAATTAGGTAA-CAGAATCAGAATCAGTATTAGGTAACAGAATCAGAATCAGAAACA-G-AATCA
1 GAATCA-G-AATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAA-CA
* * * * * * * *
102224651 GAATTAGGTAA-CAGAATCAGAATTAGTATCAGGTAACAGAATCAGAACCAGAACCA-G-AATCA
1 GAATCA-G-AATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAA-CA
* * * * *
102224713 AAATTAGGTAA-CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAG
1 GAATCA-G-AATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAG
102224764 AATATGAATG
Statistics
Matches: 157, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
61 5 0.03
62 150 0.96
63 2 0.01
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (62 bp):
GAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACA
Found at i:102224766 original size:37 final size:37
Alignment explanation
Indices: 102224526--102224757 Score: 164
Period size: 37 Copynumber: 5.9 Consensus size: 37
102224516 TAACTAGAAT
* * *
102224526 CAGAATCAGAATCAGAATTAGAATCAAAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
* * * *
102224563 CAGAATCAAAATCAAAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
*
102224600 CAGAATCAGAATCAGTATTAGGTAACAGAATCAGAATCA-GAAA
1 CAGAATCAGAATCAG-A--A--T--CAGAATCAGAATCAGGTAA
*
102224643 CAGAATCAGAATTAGGTAA-CAGAATCAGAATTAGTATCAGGTAA
1 CAGAATCAGAATCA-G-AATCAGAATCAG----A--ATCAGGTAA
* * * *
102224687 CAGAATCAGAACCAGAACCAGAATCAAAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
*
102224724 CAGAATCAGAATCAGTATCAGGTAA-CAGAATCAG
1 CAGAATCAGAATCAGAATCA-G-AATCAGAATCAG
102224758 AATCAGAATA
Statistics
Matches: 154, Mismatches: 23, Indels: 35
0.73 0.11 0.17
Matches are distributed among these distances:
37 77 0.50
38 9 0.06
39 3 0.02
40 1 0.01
41 1 0.01
42 3 0.02
43 29 0.19
44 31 0.20
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (37 bp):
CAGAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:102224839 original size:27 final size:27
Alignment explanation
Indices: 102224798--102224976 Score: 204
Period size: 27 Copynumber: 6.7 Consensus size: 27
102224788 TCCAGCCGTA
* *
102224798 TACCCTACAGAGGTATTGCGATAATTC
1 TACCCTACAGGGGTATTTCGATAATTC
102224825 TACCCTACAGGGGTATTTC-AGTAATTC
1 TACCCTACAGGGGTATTTCGA-TAATTC
*
102224852 TACCCTACA-GGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCGATAATTC
* * *
102224878 TACCCTATAGGGGTATTTTGATAATTT
1 TACCCTACAGGGGTATTTCGATAATTC
**
102224905 TACCCTACAGGGGTATTTCGGGAATTC
1 TACCCTACAGGGGTATTTCGATAATTC
* *
102224932 TACCTTACTA-GGGTATTT-TAGTAATTC
1 TACCCTAC-AGGGGTATTTCGA-TAATTC
*
102224959 TACCCTACAAGGGTATTT
1 TACCCTACAGGGGTATTT
102224977 TGGTAATTTT
Statistics
Matches: 129, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
26 25 0.19
27 103 0.80
28 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCGATAATTC
Found at i:102224931 original size:80 final size:81
Alignment explanation
Indices: 102224798--102224988 Score: 267
Period size: 80 Copynumber: 2.4 Consensus size: 81
102224788 TCCAGCCGTA
* ** * *
102224798 TACCCTACAGAGGTATTGCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC-AG
1 TACCCTACAGGGGTATTTTGATAATTTTACCCTACAGGGGTATTTCAGGAATTCTACCCTACTAG
*
102224862 GGTATTTCGGTAATTC
66 GGTATTTCAGTAATTC
* * *
102224878 TACCCTATAGGGGTATTTTGATAATTTTACCCTACAGGGGTATTTCGGGAATTCTACCTTACTAG
1 TACCCTACAGGGGTATTTTGATAATTTTACCCTACAGGGGTATTTCAGGAATTCTACCCTACTAG
*
102224943 GGTATTTTAGTAATTC
66 GGTATTTCAGTAATTC
* *
102224959 TACCCTACAAGGGTATTTTGGTAATTTTAC
1 TACCCTACAGGGGTATTTTGATAATTTTAC
102224989 AAACTAAGGG
Statistics
Matches: 97, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
80 54 0.56
81 43 0.44
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (81 bp):
TACCCTACAGGGGTATTTTGATAATTTTACCCTACAGGGGTATTTCAGGAATTCTACCCTACTAG
GGTATTTCAGTAATTC
Found at i:102224946 original size:54 final size:56
Alignment explanation
Indices: 102224798--102225030 Score: 259
Period size: 54 Copynumber: 4.3 Consensus size: 56
102224788 TCCAGCCGTA
* * * *
102224798 TACCCTACAGAGGTATTGCGATAATTCTACCCTAC-AGGGGTA-TTTCAGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTCTACCCTACTAGGGGTATTTTGAGTAATTC
*
102224852 TACCCTACA-GGGTATTTCGGTAATTCTACCCTA-TAGGGGTATTTTGA-TAATTT
1 TACCCTACAGGGGTATTTCGGTAATTCTACCCTACTAGGGGTATTTTGAGTAATTC
* *
102224905 TACCCTACAGGGGTATTTCGGGAATTCTACCTTACTA-GGGTATTTT-AGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTCTACCCTACTAGGGGTATTTTGAGTAATTC
* * * ** * *
102224959 TACCCTACAAGGGTATTTTGGTAATTTTA-CAAACTAAGGGTGTTTTG-GTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTCTACCCTACTAGGGGTATTTTGAGTAATTC
* *
102225013 TACCATATAGGGGTATTT
1 TACCCTACAGGGGTATTT
102225031 TTGTAATTTC
Statistics
Matches: 154, Mismatches: 18, Indels: 14
0.83 0.10 0.08
Matches are distributed among these distances:
53 48 0.31
54 104 0.68
55 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (56 bp):
TACCCTACAGGGGTATTTCGGTAATTCTACCCTACTAGGGGTATTTTGAGTAATTC
Found at i:102224977 original size:27 final size:27
Alignment explanation
Indices: 102224819--102225038 Score: 219
Period size: 27 Copynumber: 8.2 Consensus size: 27
102224809 GGTATTGCGA
* **
102224819 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAAGGGTATTTTGG
*
102224846 TAATTCTACCCTAC-AGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTTGG
* * *
102224872 TAATTCTACCCTATAGGGGTATTTTGA
1 TAATTCTACCCTACAAGGGTATTTTGG
* * *
102224899 TAATTTTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTTGG
* * * *
102224926 GAATTCTACCTTACTAGGGTATTTTAG
1 TAATTCTACCCTACAAGGGTATTTTGG
102224953 TAATTCTACCCTACAAGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTTGG
* ** *
102224980 TAATTTTA-CAAACTAAGGGTGTTTTGG
1 TAATTCTACCCTAC-AAGGGTATTTTGG
* * * *
102225007 TAATTCTACCATATAGGGGTATTTTTG
1 TAATTCTACCCTACAAGGGTATTTTGG
102225034 TAATT
1 TAATT
102225039 TCACAATCGA
Statistics
Matches: 159, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
26 26 0.16
27 130 0.82
28 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTTGG
Found at i:102224984 original size:81 final size:81
Alignment explanation
Indices: 102224798--102225038 Score: 269
Period size: 81 Copynumber: 3.0 Consensus size: 81
102224788 TCCAGCCGTA
** * * *
102224798 TACCCTAC-AGAGGTATTGCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC-A
1 TACCCTACAAG-GGTATTTTGATAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCATACTA
**
102224861 GGGTATTTCGGTAATTC
65 GGGTATTTTAGTAATTC
* * * *
102224878 TACCCTATAGGGGTATTTTGATAATTTTACCCTACAGGGGTATTTCGGGAATTCTACCTTACTAG
1 TACCCTACAAGGGTATTTTGATAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCATACTAG
102224943 GGTATTTTAGTAATTC
66 GGTATTTTAGTAATTC
* *
102224959 TACCCTACAAGGGTATTTTGGTAATTTTACAAACTA-AGGGTGT-TTT-GGTAATTCTACCATA-
1 TACCCTACAAGGGTATTTTGATAATTTTAC--CCTACAGGG-GTATTTCGGTAATTCTACCATAC
*
102225020 TAGGGGTATTTTTGTAATT
63 TA-GGGTATTTTAGTAATT
102225039 TCACAATCGA
Statistics
Matches: 138, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
80 54 0.39
81 72 0.52
82 7 0.05
83 5 0.04
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.38
Consensus pattern (81 bp):
TACCCTACAAGGGTATTTTGATAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCATACTAG
GGTATTTTAGTAATTC
Found at i:102225073 original size:27 final size:27
Alignment explanation
Indices: 102225043--102225436 Score: 240
Period size: 27 Copynumber: 14.4 Consensus size: 27
102225033 GTAATTTCAC
*
102225043 AATCGAGGGTAAAAC-GATAATTTTGTA
1 AATCGAGGGTAAAACAG-TAATTCTGTA
*
102225070 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
102225097 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* ***** * *
102225124 AATCGATGGTACTTTGGAAATT-TTTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*** * **
102225150 CAAGTCGAGGGTATTTTTCAGTAATTTTACA
1 -AA-TCGAGGGTA--AAACAGTAATTCTGTA
* ****
102225181 AATCAGGGGGTATTTTAGTAATT-T-TA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* * **** *
102225207 CAAACCAGGGGTATTTTAGTAATTTTGTA
1 -AATCGA-GGGTAAAACAGTAATTCTGTA
* ** *
102225236 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
102225263 AATCGAGGGTAGAACGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
102225290 AATCGAGGGTAAAAATAGTAATTTTGTA
1 AATCGAGGGT-AAAACAGTAATTCTGTA
* *
102225318 ATTCGAGGGTAAAATAGTAACTT-TGTA
1 AATCGAGGGTAAAACAGTAA-TTCTGTA
* *
102225345 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
** *
102225372 AATTAAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
** *
102225399 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
102225426 AATCGAGGGTA
1 AATCGAGGGTA
102225437 CTTTGATAAT
Statistics
Matches: 298, Mismatches: 55, Indels: 28
0.78 0.14 0.07
Matches are distributed among these distances:
26 6 0.02
27 224 0.75
28 47 0.16
29 4 0.01
30 15 0.05
31 2 0.01
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.33
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:102225118 original size:54 final size:54
Alignment explanation
Indices: 102225043--102225436 Score: 317
Period size: 54 Copynumber: 7.2 Consensus size: 54
102225033 GTAATTTCAC
* * *
102225043 AATCGAGGGTAAAAC-GATAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAG-TAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTA
* * * *** * *
102225097 AATCGAGGGTAAAACAGTAATTCTATAAATCGATGGTACTTTGGAAATTTT-TA
1 AATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTA
*** ** * *** **
102225150 CAAGTCGAGGGTATTTTTCAGTAATTTTACAAATCAGGGGGTATTTTAGTAATTTTACA
1 -AA-TCGAGGGTA--AAACAGTAATTTTGTAAATC-GAGGGTAAAATAGTAATTTTGTA
* **** * * * *
102225209 AA-CCAGGGGTATTTTAGTAATTTTGTAAATTGAGGGTAAAATGGTAATTCTATA
1 AATCGA-GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTA
* * *
102225263 AATCGAGGGTAGAACGGTAATTCTGTAAATCGAGGGTAAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGT-AAAATAGTAATTTTGTA
* * *
102225318 ATTCGAGGGTAAAATAGTAACTTTGTAAATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTA
** * * *
102225372 AATTAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTA
102225426 AATCGAGGGTA
1 AATCGAGGGTA
102225437 CTTTGATAAT
Statistics
Matches: 269, Mismatches: 61, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
53 2 0.01
54 154 0.57
55 73 0.27
56 2 0.01
57 20 0.07
58 17 0.06
59 1 0.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.33
Consensus pattern (54 bp):
AATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTA
Found at i:102225446 original size:27 final size:26
Alignment explanation
Indices: 102225389--102225559 Score: 110
Period size: 27 Copynumber: 6.3 Consensus size: 26
102225379 GGTAAAACAG
* ** *
102225389 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTTTATAAATCGAGGGT-ATTTGA
*
102225416 TAATTTTGTAAATCGAGGGTACTTTGA
1 TAATTTTATAAATCGAGGGTA-TTTGA
* ** *
102225443 TAATTTTACATGTCGAGGGTATTTCA
1 TAATTTTATAAATCGAGGGTATTTGA
*
102225469 GTAATTTTTGTAAA-CTGAGGGTATTTCGA
1 -TAA-TTTTATAAATC-GAGGGTATTT-GA
* * *
102225498 TAATTTTACAAATCGAGGATATTTGGG
1 TAATTTTATAAATCGAGGGTATTT-GA
* * * *
102225525 TAATTTTAAAAATCAAGGGTGCTTTGG
1 TAATTTTATAAATCGAGGGT-ATTTGA
102225552 TAATTTTA
1 TAATTTTA
102225560 CAGCTGAGGG
Statistics
Matches: 113, Mismatches: 24, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
26 5 0.04
27 85 0.75
28 22 0.19
29 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (26 bp):
TAATTTTATAAATCGAGGGTATTTGA
Found at i:102225481 original size:109 final size:107
Alignment explanation
Indices: 102225268--102225593 Score: 270
Period size: 109 Copynumber: 3.0 Consensus size: 107
102225258 CTATAAATCG
* * * * ***
102225268 AGGGTAGAACGGTAATTCTGTAAATCGAGGGTAAAAATAGTAATTTTGTAATTCGAGGGTAAAAT
1 AGGGTAAAAC-GTAATTCTATAAATCGAGGGT-AAAATGGTAATTTTGTAAATCGAGGGTACTTT
* ** *
102225333 -AGTAACTTTGTA-AATCGAGGGTAAAAT-AGTAA-TTTTGTAAATTA
64 GA-TAA-TTT-TACAGTCGAGGGT-ATTTCAGTAATTTTTGTAAACTA
102225377 AGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTACTTTG
1 AGGGTAAAAC-GTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTACTTTG
*
102225442 ATAATTTTACATGTCGAGGGTATTTCAGTAATTTTTGTAAACTG
65 ATAATTTTACA-GTCGAGGGTATTTCAGTAATTTTTGTAAACTA
*** * * * ** ** * *
102225486 AGGGTATTTCGATAATTTTACAAATCGAGGAT-ATTTGGGTAATTTTAAAAATCAAGGGTGCTTT
1 AGGGTAAAACG-TAATTCTATAAATCGAGGGTAAAAT-GGTAATTTTGTAAATCGAGGGTACTTT
* *
102225550 GGTAATTTTACAG-CTGAGGGTATTTCAGTAA-TTTGGTAAACTA
64 GATAATTTTACAGTC-GAGGGTATTTCAGTAATTTTTGTAAACTA
102225593 A
1 A
102225594 AGTATTATAA
Statistics
Matches: 181, Mismatches: 28, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
106 2 0.01
107 18 0.10
108 63 0.35
109 98 0.54
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.35
Consensus pattern (107 bp):
AGGGTAAAACGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTACTTTGA
TAATTTTACAGTCGAGGGTATTTCAGTAATTTTTGTAAACTA
Found at i:102225501 original size:55 final size:55
Alignment explanation
Indices: 102225415--102225583 Score: 168
Period size: 55 Copynumber: 3.1 Consensus size: 55
102225405 GGGTAAAATG
** *
102225415 GTAA-TTTTGTAAATCGAGGGTACTTTGATAATTTTACATGTCGAGGGTATTTCA
1 GTAATTTTTGTAAATCGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTCA
**
102225469 GTAATTTTTGTAAA-CTGAGGGTA-TTTCGATAATTTTACAAATCGAGGATATTTGG
1 GTAATTTTTGTAAATC-GAGGGTACTTT-GATAATTTTACAAATCGAGGATATTTCA
** * * * ** *
102225524 GTAA-TTTTAAAAATCAAGGGTGCTTTGGTAATTTTACAGCT-GAGGGTATTTCA
1 GTAATTTTTGTAAATCGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTCA
102225577 GTAATTT
1 GTAATTT
102225584 GGTAAACTAA
Statistics
Matches: 94, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
53 13 0.14
54 34 0.36
55 47 0.50
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (55 bp):
GTAATTTTTGTAAATCGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTCA
Found at i:102237738 original size:39 final size:39
Alignment explanation
Indices: 102237695--102237858 Score: 247
Period size: 39 Copynumber: 4.2 Consensus size: 39
102237685 GTAATTTGCT
* * * *
102237695 TGCTAGGTATAAACCCGAACTTAACACCGGCATGAGGCC
1 TGCTAGGTATAAACCTGAATTTATCACCGGCACGAGGCC
** *
102237734 TGCTAGGTATAAACCTGAATTTATCATTGGCATGAGGCC
1 TGCTAGGTATAAACCTGAATTTATCACCGGCACGAGGCC
102237773 TGCTAGGTATAAAAACCTGAATTTATCACCGGCACGAGGCC
1 TGCTAGGTAT--AAACCTGAATTTATCACCGGCACGAGGCC
102237814 TGCTAGGTATAAACCTGAATTTATCACCGGCACGAGGCC
1 TGCTAGGTATAAACCTGAATTTATCACCGGCACGAGGCC
102237853 TGCTAG
1 TGCTAG
102237859 ACATTAAGTC
Statistics
Matches: 115, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 79 0.69
41 36 0.31
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (39 bp):
TGCTAGGTATAAACCTGAATTTATCACCGGCACGAGGCC
Found at i:102237806 original size:80 final size:78
Alignment explanation
Indices: 102237695--102237858 Score: 247
Period size: 80 Copynumber: 2.1 Consensus size: 78
102237685 GTAATTTGCT
*
102237695 TGCTAGGTATAAACCCGAACTTAACACCGGCATGAGGCCTGCTAGGTATAAACCTGAATTTATCA
1 TGCTAGGTATAAACCCGAACTTAACACCGGCACGAGGCCTGCTAGGTATAAACCTGAATTTATCA
** *
102237760 TTGGCATGAGGCC
66 CCGGCACGAGGCC
* * *
102237773 TGCTAGGTATAAAAACCTGAATTTATCACCGGCACGAGGCCTGCTAGGTATAAACCTGAATTTAT
1 TGCTAGGTAT--AAACCCGAACTTAACACCGGCACGAGGCCTGCTAGGTATAAACCTGAATTTAT
102237838 CACCGGCACGAGGCC
64 CACCGGCACGAGGCC
102237853 TGCTAG
1 TGCTAG
102237859 ACATTAAGTC
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 10 0.13
80 67 0.87
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (78 bp):
TGCTAGGTATAAACCCGAACTTAACACCGGCACGAGGCCTGCTAGGTATAAACCTGAATTTATCA
CCGGCACGAGGCC
Found at i:102244268 original size:47 final size:46
Alignment explanation
Indices: 102244152--102244277 Score: 150
Period size: 47 Copynumber: 2.7 Consensus size: 46
102244142 ATATTTGTGT
*
102244152 GCTAGTGTAAGACATGTTTGGGACATGCATCGACCACATTATGAGA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGACCACATTACGAGA
* * *
102244198 GCCAGTGTAAGACAATGTCTGGGACATGGCATC-A-GA-ATTGAGACGAGA
1 GCTAGTGTAAGAC-ATGTTTGGGACAT-GCATCGACCACATT---ACGAGA
102244246 GCTAGTGTAAGACATGTTTGGGACATGCATCG
1 GCTAGTGTAAGACATGTTTGGGACATGCATCG
102244278 GCCTCTTGAT
Statistics
Matches: 68, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
45 3 0.04
46 18 0.26
47 25 0.37
48 22 0.32
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCGACCACATTACGAGA
Found at i:102244313 original size:94 final size:92
Alignment explanation
Indices: 102244152--102244373 Score: 252
Period size: 94 Copynumber: 2.4 Consensus size: 92
102244142 ATATTTGTGT
* *
102244152 GCTAGTGTAAGACATGTTTGGGACATGCATCGACCACATTATGAGAGCCAGTGTAAGACAATGTC
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAGAGCCAATGTAAGACAATGTC
102244217 TGGGACATGGCATCAGAATTGAGAC-GAGA
66 TGGGACATGGCATC-GAATT-A-ACGGAGA
* * ** *
102244246 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTC-TTGATGTA-TGTTAATGTAAGACCATG
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATT-ATG-AGAGCCAATGTAAGACAATG
*
102244309 TCTGGGACATGGCATCGACTTAACGTGAGA
64 TCTGGGACATGGCATCGAATTAACG-GAGA
* * *
102244339 GCCAGTATAAGACCATGTCTGGGACATGGCATCGG
1 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGG
102244374 TATTAAACCT
Statistics
Matches: 111, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
91 2 0.02
92 1 0.01
93 20 0.18
94 80 0.72
95 8 0.07
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAGAGCCAATGTAAGACAATGTC
TGGGACATGGCATCGAATTAACGGAGA
Found at i:102261791 original size:21 final size:21
Alignment explanation
Indices: 102261766--102261808 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
102261756 TGAAATAGTG
* *
102261766 TAAGGCCATTGACATCATGCC
1 TAAGGCCACTAACATCATGCC
*
102261787 TAAGGCCACTAACATTATGCC
1 TAAGGCCACTAACATCATGCC
102261808 T
1 T
102261809 CTATCGTCCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (21 bp):
TAAGGCCACTAACATCATGCC
Found at i:102262826 original size:38 final size:37
Alignment explanation
Indices: 102262782--102262861 Score: 124
Period size: 38 Copynumber: 2.1 Consensus size: 37
102262772 AAACAAGCTC
* *
102262782 CCCAAATCCCTAAACCCATTACAACCCAATACCCAAAA
1 CCCAAATCCCTAAACCCATGAAAACCCAATACCC-AAA
*
102262820 CCCAAATCCCTAAATCCATGAAAACCCAATACCCAAA
1 CCCAAATCCCTAAACCCATGAAAACCCAATACCCAAA
102262857 CCCAA
1 CCCAA
102262862 CAGACTTAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
37 8 0.21
38 31 0.79
ACGTcount: A:0.45, C:0.41, G:0.01, T:0.12
Consensus pattern (37 bp):
CCCAAATCCCTAAACCCATGAAAACCCAATACCCAAA
Found at i:102263338 original size:13 final size:13
Alignment explanation
Indices: 102263322--102263348 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
102263312 TATTAAAAGC
102263322 ATAAAAAATAAAA
1 ATAAAAAATAAAA
102263335 ATAAAAAATAAAA
1 ATAAAAAATAAAA
102263348 A
1 A
102263349 AAATATACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
ATAAAAAATAAAA
Found at i:102263963 original size:22 final size:22
Alignment explanation
Indices: 102263937--102263984 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
102263927 CTTTATTTTT
102263937 TATTATTTTTTAATATTATTAC
1 TATTATTTTTTAATATTATTAC
* *
102263959 TATTATTTTTTTATATTATTAT
1 TATTATTTTTTAATATTATTAC
102263981 TATT
1 TATT
102263985 TTTACCGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (22 bp):
TATTATTTTTTAATATTATTAC
Found at i:102263975 original size:19 final size:21
Alignment explanation
Indices: 102263937--102263987 Score: 70
Period size: 19 Copynumber: 2.5 Consensus size: 21
102263927 CTTTATTTTT
102263937 TATTATTTTTTAATATTATTAC
1 TATTATTTTTT-ATATTATTAC
*
102263959 TATTATTTTTT-TA-TATTAT
1 TATTATTTTTTATATTATTAC
102263978 TATTATTTTT
1 TATTATTTTT
102263988 ACCGTTAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 15 0.54
20 2 0.07
22 11 0.39
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (21 bp):
TATTATTTTTTATATTATTAC
Done.