Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 327 of 433
Found at i:102264124 original size:3 final size:3
Alignment explanation
Indices: 102264116--102264242 Score: 53
Period size: 3 Copynumber: 41.0 Consensus size: 3
102264106 TAATATTTTC
* * * * * *
102264116 TAT TAT TAT TAT TAC TAC TAA TAT CAC TAT TAT CAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
102264164 TACCT T-T TTT TAT CTAAT GTAT TAT TA- TACCT TTT TAT TAT TAT TAC
1 TA--T TAT TAT TAT -T-AT -TAT TAT TAT TA--T TAT TAT TAT TAT TAT
* ** *
102264211 TA- TAG TAT TAT TGC TAT TAT TAT TTT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
102264243 ATTTTCCTTT
Statistics
Matches: 94, Mismatches: 21, Indels: 18
0.71 0.16 0.14
Matches are distributed among these distances:
2 6 0.06
3 79 0.84
4 3 0.03
5 6 0.06
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:102264586 original size:19 final size:22
Alignment explanation
Indices: 102264545--102264587 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
102264535 TACTATTATT
102264545 ATTTTTATTAATATTAGTGTAC
1 ATTTTTATTAATATTAGTGTAC
102264567 ATTTTTATT-ATA-TA-TGTAC
1 ATTTTTATTAATATTAGTGTAC
102264586 AT
1 AT
102264588 ATAAATATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.33
20 2 0.10
21 3 0.14
22 9 0.43
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.56
Consensus pattern (22 bp):
ATTTTTATTAATATTAGTGTAC
Found at i:102267063 original size:34 final size:35
Alignment explanation
Indices: 102267017--102267094 Score: 140
Period size: 34 Copynumber: 2.3 Consensus size: 35
102267007 TAAAATGTGC
*
102267017 ATGACCATTGTGTATTCAAGCTAAAGAGTGGTCAT
1 ATGACCATTGTGTATTCAAGCTAAAGAGTGGCCAT
102267052 AT-ACCATTGTGTATTCAAGCTAAAGAGTGGCCAT
1 ATGACCATTGTGTATTCAAGCTAAAGAGTGGCCAT
102267086 ATGACCATT
1 ATGACCATT
102267095 TAAAATCCTT
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
34 33 0.80
35 8 0.20
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31
Consensus pattern (35 bp):
ATGACCATTGTGTATTCAAGCTAAAGAGTGGCCAT
Found at i:102267610 original size:40 final size:39
Alignment explanation
Indices: 102267504--102267632 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 39
102267494 TGCTGGAAAT
* * * *
102267504 TATATCCGGGTTAAGACCCGAAGGCAAATGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
102267544 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
102267584 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
102267624 TATATCCGG
1 TATATCCGG
102267633 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
39 3 0.04
40 72 0.94
41 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:102273282 original size:50 final size:48
Alignment explanation
Indices: 102273216--102273536 Score: 266
Period size: 50 Copynumber: 6.7 Consensus size: 48
102273206 ACATCAAAAT
*
102273216 CGATGTCATGTCCCAGACATGGTCTTACACTGACTCTCATGTATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-ACTCTCAT-TATCGAGGC
* * * ** *
102273266 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATTGTTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACT-ACTCTCAT-TATCGAGGC
* * * * *
102273316 CAATGCCATGTCCCATACATGGTCTTACACT-CACACA-TATC-AAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTACTCTCATTATCGAGGC
* * *
102273361 CGATGCCATGTCCCAGACATGGTCTTACACTAACTTTCAAATGTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-ACTCTC-ATTATCGAGGC
* * * * *
102273411 CGATGCCATGTCCTAAACATGGTCTTACACTAGCTCT--TGTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTA-CTCTCAT-TATCGAGGC
* *
102273459 CGATGTCATGTCCCA-AGCATGGTCTTACACTAGCTCTCATAAT-GTA-GC
1 CGATGCCATGTCCCAGA-CATGGTCTTACACTA-CTCTCATTATCG-AGGC
*
102273507 CGATG-CATGTCTCAGACAT-GTCTTACACTA
1 CGATGCCATGTCCCAGACATGGTCTTACACTA
102273537 GCACACATGT
Statistics
Matches: 224, Mismatches: 35, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
45 30 0.13
46 14 0.06
47 14 0.06
48 52 0.23
49 6 0.03
50 108 0.48
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTACTCTCATTATCGAGGC
Found at i:102273417 original size:95 final size:94
Alignment explanation
Indices: 102273216--102273544 Score: 301
Period size: 95 Copynumber: 3.4 Consensus size: 94
102273206 ACATCAAAAT
* * * *
102273216 CGATGTCATGTCCCAGACATGGTCTTACACTGACTCTCATGTATCGAGGCCGATGTCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACT-ACACACA--TATC-AAGCCGATGTCATGTCCCA
* * * *
102273281 GACATGGTCTTACACTGGCTCTCATCTAT-TGTTGT
62 GACATGGTCTTACACTAGCTCTCA--AATGTG-AGC
* * *
102273316 CAATGCCATGTCCCATACATGGTCTTACACT-CACACATATCAAGCCGATGCCATGTCCCAGACA
1 CGATGCCATGTCCCAGACATGGTCTTACACTACACACATATCAAGCCGATGTCATGTCCCAGACA
* *
102273380 TGGTCTTACACTAACTTTCAAATGTCGAGGC
66 TGGTCTTACACTAGCTCTCAAATGT-GA-GC
* * * *** *
102273411 CGATGCCATGTCCTAAACATGGTCTTACACTAGCTCTTGTCTCAATGCCGATGTCATGTCCCA-A
1 CGATGCCATGTCCCAGACATGGTCTTACACTA-CACACATATCAA-GCCGATGTCATGTCCCAGA
102273475 GCATGGTCTTACACTAGCTCTCATAATGT-AGC
64 -CATGGTCTTACACTAGCTCTCA-AATGTGAGC
*
102273507 CGATG-CATGTCTCAGACAT-GTCTTACACTAGCACACAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTA-CACACAT
102273545 GTCACCCAAA
Statistics
Matches: 190, Mismatches: 31, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
93 2 0.01
94 16 0.08
95 79 0.42
96 11 0.06
97 9 0.05
98 40 0.21
99 5 0.03
100 28 0.15
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTACACACATATCAAGCCGATGTCATGTCCCAGACA
TGGTCTTACACTAGCTCTCAAATGTGAGC
Found at i:102273497 original size:43 final size:45
Alignment explanation
Indices: 102273318--102273538 Score: 148
Period size: 48 Copynumber: 4.7 Consensus size: 45
102273308 ATTGTTGTCA
* * *
102273318 ATGCCATGTCCCATACATGGTCTTACACTCA-CACATATCAA-GCCG
1 ATGCCATGTCCCAAACATGGTCTTACACT-AGC-CTTCTCAATGCCG
* * * * *
102273363 ATGCCATGTCCCAGACATGGTCTTACACTAACTTTCAAATGTCGAGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCCTTC-----TCAATGCCG
*
102273413 ATGCCATGTCCTAAACATGGTCTTACACTAGCTCTTGTCTCAATGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGC-C-T-TCTCAATGCCG
* *
102273461 ATGTCATGTCCCAAGCATGGTCTTACACTAG-C-TCTCATAATGTAGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCCTTCTC--AA--T-GCCG
* *
102273509 ATG-CATGTCTCAGACAT-GTCTTACACTAGC
1 ATGCCATGTCCCAAACATGGTCTTACACTAGC
102273539 ACACATGTCA
Statistics
Matches: 143, Mismatches: 17, Indels: 30
0.75 0.09 0.16
Matches are distributed among these distances:
43 4 0.03
44 2 0.01
45 31 0.22
46 13 0.09
47 12 0.08
48 42 0.29
49 3 0.02
50 33 0.23
52 1 0.01
53 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (45 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCCTTCTCAATGCCG
Found at i:102273516 original size:145 final size:143
Alignment explanation
Indices: 102273216--102273536 Score: 362
Period size: 145 Copynumber: 2.2 Consensus size: 143
102273206 ACATCAAAAT
* * ** *
102273216 CGATGTCATGTCCCAGACATGGTCTTACACTGACTCTCATGTATCGAGGCCGATGTCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCAAATATCGAGGCCGATGCCATGTCCCA
* * * *
102273281 GACATGGTCTTACACTGGCTCTCATCTATTGTTGTCAATGCCATGTCCCATACATGGTCTTACAC
66 AACATGGTCTTACACTAGCTCTCATCTA-T-ATGCCAATGCCATGTCCCATACATGGTCTTACAC
102273346 TCACACATATCAAGC
129 TCACACATATCAAGC
* * *
102273361 CGATGCCATGTCCCAGACATGGTCTTACACTAACTTTCAAATGTCGAGGCCGATGCCATGTCCTA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCAAATATCGAGGCCGATGCCATGTCCCA
** * *
102273426 AACATGGTCTTACACTAGCTCTTGTCTCA-ATGCCGATGTCATGTCCCA-AGCATGGTCTTACAC
66 AACATGGTCTTACACTAGCTCTCATCT-ATATGCCAATGCCATGTCCCATA-CATGGTCTTACAC
* * **
102273489 TAGCTCTCATAATGTAGC
129 T--CACACAT-ATCAAGC
*
102273507 CGATG-CATGTCTCAGACAT-GTCTTACACTA
1 CGATGCCATGTCCCAGACATGGTCTTACACTA
102273537 GCACACATGT
Statistics
Matches: 150, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
142 1 0.01
143 29 0.19
144 11 0.07
145 98 0.65
146 11 0.07
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (143 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCAAATATCGAGGCCGATGCCATGTCCCA
AACATGGTCTTACACTAGCTCTCATCTATATGCCAATGCCATGTCCCATACATGGTCTTACACTC
ACACATATCAAGC
Found at i:102281723 original size:39 final size:39
Alignment explanation
Indices: 102281602--102281737 Score: 168
Period size: 40 Copynumber: 3.4 Consensus size: 39
102281592 GGATATAACG
* *
102281602 ACTCGCTCAAATGCCTTCGGGAC-AAACCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAA-CCCGGTT-TAGTA
*
102281642 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCC-GGTTTAGTA
*
102281682 ACTCGCACAAATGCCTTCGGG-CTTAACCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGG-TTTAGTA
* *
102281721 ACTCGCACGAACGCCTT
1 ACTCGCACAAATGCCTT
102281738 TCGATCTTAG
Statistics
Matches: 86, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.02
39 29 0.34
40 49 0.57
41 6 0.07
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTAGTA
Found at i:102289816 original size:75 final size:75
Alignment explanation
Indices: 102289623--102290063 Score: 485
Period size: 75 Copynumber: 6.0 Consensus size: 75
102289613 AATTTCTGTT
* * ** * *
102289623 TTTC-AAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATCT
1 TTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATCACACACTGAGGTATTT
* *
102289687 TCAGTTCCTATT
66 TCAATT--TATG
* *
102289699 TTTCAAAAAAAAAAATGAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATCACGCACTGAGGT
1 TTTC----AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATCACACACTGAGGT
102289764 ATTTTCAATTTATG
62 ATTTTCAATTTATG
*
102289778 TTTCAAAAAAATCAACTTATATTGCGAGAAGTGAGTTGAGCCTCAAATCACACACTGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATCACACACTGAGGTATTT
102289843 TCAATTTATG
66 TCAATTTATG
* *
102289853 TTTCATAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATCACGCACTGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATCACACACTGAGGTATTT
* *
102289918 TTAGTTTATG
66 TCAATTTATG
* * *** **
102289928 TTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTA--T
1 TTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATCACACACTGAGGTATTT
102289991 T---TTTA-G
66 TCAATTTATG
* * * **
102289997 TTTC-----TATCAACTCATATTAC-AAAAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATT
1 TTTCAAAAAAATCAACTCATATTGCGAGAA-GTGAGTTGAGCCTCAAATCACACACTGAGGTATT
102290056 TTCAATTT
65 TTCAATTT
102290064 TTTACTCTTT
Statistics
Matches: 321, Mismatches: 33, Indels: 29
0.84 0.09 0.08
Matches are distributed among these distances:
63 2 0.01
64 44 0.14
66 2 0.01
69 8 0.02
70 4 0.01
73 2 0.01
75 191 0.60
76 4 0.01
79 7 0.02
81 57 0.18
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31
Consensus pattern (75 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATCACACACTGAGGTATTT
TCAATTTATG
Found at i:102289913 original size:150 final size:148
Alignment explanation
Indices: 102289623--102290063 Score: 535
Period size: 150 Copynumber: 3.0 Consensus size: 148
102289613 AATTTCTGTT
*
102289623 TTTC-AAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATCT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTAT-T
* * *
102289687 TCAGTTCCTATTTTTCAAAAAAAAAAATGAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATC
65 TCA-TT--TATGTTTC----ATAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATC
102289752 ACGCACTGAGGTATTTTCAATTTATG
123 ACGCACTGAGGTATTTTCAATTTATG
* * ** *
102289778 TTTCAAAAAAATCAACTTATATTGCGAGAAGTGAGTTGAGCCTCAAATCACACACTGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTA-TT
102289843 TCAATTTATGTTTCATAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATCACGCAC
65 TC-ATTTATGTTTCATAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATCACGCAC
* *
102289908 TGAGGTATTTTTAGTTTATG
129 TGAGGTATTTTCAATTTATG
* * *
102289928 TTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTA-TT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTT
* * ** *
102289992 --TTTA-GTTTC-T----ATCAACTCATATTAC-AAAAGGTGAGTTGAGCCTCAGGTCACACACT
66 CATTTATGTTTCATAAAAATCAACTCATATTGCGAGAA-GTGAGTTGAGCCTCAAATCACGCACT
102290048 GAGGTATTTTCAATTT
130 GAGGTATTTTCAATTT
102290064 TTTACTCTTT
Statistics
Matches: 256, Mismatches: 26, Indels: 24
0.84 0.08 0.08
Matches are distributed among these distances:
138 3 0.01
139 51 0.20
143 1 0.00
144 5 0.02
145 4 0.02
148 2 0.01
150 121 0.47
154 7 0.03
155 4 0.02
156 56 0.22
157 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31
Consensus pattern (148 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTT
CATTTATGTTTCATAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAATCACGCACTG
AGGTATTTTCAATTTATG
Found at i:102290041 original size:64 final size:64
Alignment explanation
Indices: 102289938--102290057 Score: 195
Period size: 64 Copynumber: 1.9 Consensus size: 64
102289928 TTTCAAAAAA
* * * **
102289938 ATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTTTAGTTTCT
1 ATCAACTCATATTACAAAAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATTTTTAGTTTCT
102290002 ATCAACTCATATTACAAAAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATTTT
1 ATCAACTCATATTACAAAAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATTTT
102290058 CAATTTTTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 51 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (64 bp):
ATCAACTCATATTACAAAAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTATTTTTAGTTTCT
Found at i:102291200 original size:3 final size:3
Alignment explanation
Indices: 102291194--102291553 Score: 202
Period size: 3 Copynumber: 119.0 Consensus size: 3
102291184 TTTTTTTTAA
* * *
102291194 TAT TAT TAA TAT TAT TAC TAT TAT TTT TAT T-T CTAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
* ** * * * * *
102291239 TAT TAT TAC CGT TAG TAT TAT T-T TCAT TAC TAT TAT TTT TAA TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * * * *
102291284 CA- TAT TAT TACT AAT TTT TAC CA- TAT TAT TAT T-T T-T TA- TGT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * *
102291325 TAT TAT TGT TAT TAA CAT ATAT TAT TCT TAT TAACG TAC TAA TAT TTT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT T-A-T TAT TAT TAT TAT
* * * * * *
102291373 CTAT TAT TAT TAT TAT TAC TAC TAA TAT CAT CAT CAT TAT TAT TAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
102291419 TAT TAT TTT TAT TAT TAT TAT TAT TAT TAT TAT TACCT T-T T-T TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA--T TAT TAT TAT
* *
102291464 TAT CTAAT GTAT TAT TA- TACCT TTT TAT TAT TAT TAC TA- TAT TAT
1 TAT -T-AT -TAT TAT TAT TA--T TAT TAT TAT TAT TAT TAT TAT TAT
102291509 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
102291554 ATTTTCCTTT
Statistics
Matches: 278, Mismatches: 57, Indels: 44
0.73 0.15 0.12
Matches are distributed among these distances:
2 18 0.06
3 239 0.86
4 14 0.05
5 7 0.03
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:102291648 original size:23 final size:23
Alignment explanation
Indices: 102291621--102291676 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
102291611 TATATTAGCA
*
102291621 CACTTATTTTATTTATATATCAT
1 CACTTATTTTATTAATATATCAT
* *
102291644 TACTT-TTATTATTAATATCTCAT
1 CACTTATT-TTATTAATATATCAT
*
102291667 CAATTATTTT
1 CACTTATTTT
102291677 TATCTCTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
22 2 0.08
23 22 0.85
24 2 0.08
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.57
Consensus pattern (23 bp):
CACTTATTTTATTAATATATCAT
Found at i:102291735 original size:3 final size:3
Alignment explanation
Indices: 102291723--102291814 Score: 53
Period size: 3 Copynumber: 30.7 Consensus size: 3
102291713 ATTATCTGTC
* * * * *
102291723 TTA TTG TTA TTA TTA TT- TGTA TTTA TCA TTA TTA TCA CTA TTA TTT
1 TTA TTA TTA TTA TTA TTA T-TA -TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
102291769 TTA TTT TTA TTA CTA TTA TCA TTT TTA -AA TTA TTA TTA CTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
102291815 CTTTTACCTT
Statistics
Matches: 63, Mismatches: 22, Indels: 8
0.68 0.24 0.09
Matches are distributed among these distances:
2 2 0.03
3 58 0.92
4 2 0.03
5 1 0.02
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:102291890 original size:19 final size:22
Alignment explanation
Indices: 102291849--102291891 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
102291839 TACTATTATT
102291849 ATTTTTATTAATATTAGTGTAC
1 ATTTTTATTAATATTAGTGTAC
102291871 ATTTTTATT-ATA-TA-TGTAC
1 ATTTTTATTAATATTAGTGTAC
102291890 AT
1 AT
102291892 ATAAATATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.33
20 2 0.10
21 3 0.14
22 9 0.43
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.56
Consensus pattern (22 bp):
ATTTTTATTAATATTAGTGTAC
Found at i:102299530 original size:40 final size:39
Alignment explanation
Indices: 102299493--102299676 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 39
102299483 GCTACTCGTT
*
102299493 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCA
*
102299533 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
* *
102299573 CCAATGCCTTCGGG-CTTAGCCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
* * * * *
102299611 CAAATGCCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAAC-TCGCA
*
102299652 CAAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
102299677 ATATCATTCG
Statistics
Matches: 123, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
37 2 0.02
38 23 0.19
39 17 0.14
40 54 0.44
41 24 0.20
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
Found at i:102299619 original size:78 final size:81
Alignment explanation
Indices: 102299493--102299680 Score: 249
Period size: 78 Copynumber: 2.4 Consensus size: 81
102299483 GCTACTCGTT
* *
102299493 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
102299557 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* ** *
102299573 CCAATGCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCTGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
*
102299636 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
*
102299652 CAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGACTTAGCCCGGATAT
102299681 CATTCGAATA
Statistics
Matches: 93, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
77 3 0.03
78 38 0.41
79 26 0.28
80 25 0.27
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:102302002 original size:40 final size:39
Alignment explanation
Indices: 102301942--102302162 Score: 241
Period size: 40 Copynumber: 5.6 Consensus size: 39
102301932 GTTATTCGAT
* *
102301942 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGAC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-GAC
* *
102301982 TATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGAC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-GAC
* * * * *
102302022 CATATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGTAGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGGA-C
* *
102302061 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTAG
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGGAC
* *
102302101 TATATCCGGGCTAAGTCCCGAAGGCATTTGAGC-AGTAGC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGGA-C
**
102302140 TATATCC-GGCTAAACCCCGAAGG
1 TATATCCGGGCTAAGTCCCGAAGG
102302163 TACTTGGTTT
Statistics
Matches: 159, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 19 0.12
39 37 0.23
40 98 0.62
41 5 0.03
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGGAC
Found at i:102302078 original size:79 final size:79
Alignment explanation
Indices: 102301943--102302162 Score: 277
Period size: 79 Copynumber: 2.8 Consensus size: 79
102301933 TTATTCGATT
*
102301943 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CGACTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AGTAG-CTATATCCGGGCTAAGTCCCGAAGGC
*
102302007 ATCTGTGC-TAGTGACC
64 ATCTGTGCGAAGT-ACC
* *
102302023 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGTAGTTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AGTAGCTATATCCGGGCTAAGTCCCGAAGGCA
* **
102302087 TTTGTGCGAAGTAGT
65 TCTGTGCGAAGTACC
* * **
102302102 ATATCCGGGCTAAGTCCCGAAGGCATTTGAGCAGTAGCTATATCC-GGCTAAACCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAGTAGCTATATCCGGGCTAAGTCCCGAAGG
102302163 TACTTGGTTT
Statistics
Matches: 123, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
78 14 0.11
79 76 0.62
80 33 0.27
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAGTAGCTATATCCGGGCTAAGTCCCGAAGGCAT
CTGTGCGAAGTACC
Found at i:102310143 original size:39 final size:39
Alignment explanation
Indices: 102310071--102310331 Score: 282
Period size: 39 Copynumber: 6.6 Consensus size: 39
102310061 GTTATTCGAT
* *
102310071 TATATTCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGAC
1 TATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TAC
*
102310112 TATATCCGGGCTAAGT-CCGAAGGCATCTGTGCTAGTGAC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-AC
* * * *
102310151 CATATCCGGGCTAAGTCCCGAAGGC-CTTGTGCAAGTAGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTA-C
102310190 TATATCC-GGCTAAGTCCCGAAGGCATTTGTG-TGAAGTAC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT--AGTAC
*
102310229 TATATCCGGGCTAAGTCCCGAAGGCATTTTGTGCGAGTTAC
1 TATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAG-TAC
* * *
102310270 TATAACCGGGCTAAGTCCCAAAGGCATTTGAGC-AGTAGC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTA-C
**
102310309 TATATCC-GGCTAAACCCCGAAGG
1 TATATCCGGGCTAAGTCCCGAAGG
102310332 TACTTGGTTG
Statistics
Matches: 189, Mismatches: 20, Indels: 25
0.81 0.09 0.11
Matches are distributed among these distances:
38 33 0.17
39 70 0.37
40 49 0.26
41 37 0.20
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAC
Found at i:102310320 original size:119 final size:117
Alignment explanation
Indices: 102310071--102310331 Score: 323
Period size: 119 Copynumber: 2.2 Consensus size: 117
102310061 GTTATTCGAT
102310071 TATATTCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCGAAGGC
1 TATA-TCC-GGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCGAAGGC
* * * * *
102310136 ATCTGTGCTAGTGACCATATCCGGGCTAAGTCCCGAAGGCCTTGTGCAAGTAGT
64 ATCTGTGCGAGTGACCATAACCGGGCTAAGTCCCAAAGGCCTTGAGCAAGTAGC
* *
102310190 TATATCCGGCTAAGTCCCGAAGGCATTTGTG-TGAAG-TACTATATCCGGGCTAAGTCCCGAAGG
1 TATATCCGGCTAAGACCCGAAGGCATTTGTGCT--AGCGACTATATCCGGGCTAAGT-CCGAAGG
* * * *
102310253 CATTTTGTGCGAGTTACTATAACCGGGCTAAGTCCCAAAGGCATTTGAGC-AGTAGC
63 CA-TCTGTGCGAGTGACCATAACCGGGCTAAGTCCCAAAGGC-CTTGAGCAAGTAGC
102310309 TATATCCGGCTAA-ACCCCGAAGG
1 TATATCCGGCTAAGA-CCCGAAGG
102310332 TACTTGGTTG
Statistics
Matches: 124, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
116 1 0.01
117 41 0.33
118 14 0.11
119 63 0.51
120 5 0.04
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (117 bp):
TATATCCGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCGAAGGCAT
CTGTGCGAGTGACCATAACCGGGCTAAGTCCCAAAGGCCTTGAGCAAGTAGC
Found at i:102312151 original size:50 final size:50
Alignment explanation
Indices: 102312078--102312353 Score: 244
Period size: 50 Copynumber: 5.7 Consensus size: 50
102312068 AGATGTCAAC
*
102312078 GCCATGTCCCGGACATGGTCTTACACTGACTCTCATGTATCGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATGTATCGAGGCCGAT
* * * * ** * *
102312128 GTCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATTGTTGTCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATGTATCGAGGCCGAT
* * * * *
102312178 GCCATGTCCAATACATGGTCTTACACT--CACACA--TATC-AAGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATGTATCGAGGCCGAT
* * ** *
102312223 GCCATGTCCCAGACATGGTCTTACACTAACTTTCAAATGTCGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATGTATCGAGGCCGAT
* * * * *
102312273 GCCATGTCCTAAACATGGTCTTACACT-AGCTCT--TGTCTCAATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATGTATCGAGGCCGAT
* * *
102312321 GTCATGTCCCAAACATGGTCTTACACTGGCTCT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCT
102312354 TATAATGTGG
Statistics
Matches: 182, Mismatches: 37, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
45 29 0.16
46 3 0.02
47 3 0.02
48 43 0.24
49 4 0.02
50 100 0.55
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCTCATGTATCGAGGCCGAT
Found at i:102312374 original size:95 final size:95
Alignment explanation
Indices: 102312090--102312396 Score: 269
Period size: 95 Copynumber: 3.2 Consensus size: 95
102312080 CATGTCCCGG
*
102312090 ACATGGTCTTACACT-GACTCTCATGTATCGAGGCCGATGTCATGTCCCAGACATGGTCTTACAC
1 ACATGGTCTTACACTAG-CTCT--TGTATC-AAGCCGATGTCATGTCCCAGACATGGTCTTACAC
* * * *
102312154 TGGCTCTCATCTATTGTTG-TCAATGCCATGTCC-AA
62 TGGCTCT--TATAATGTGGCT-GATGCCATGTCCTAA
* * * *
102312189 TACATGGTCTTACACTCA-CAC--ATATCAAGCCGATGCCATGTCCCAGACATGGTCTTACACTA
1 -ACATGGTCTTACACT-AGCTCTTGTATCAAGCCGATGTCATGTCCCAGACATGGTCTTACACTG
* *
102312251 ACT-TTCA-AATGTCGAGGCCGATGCCATGTCCTAA
64 GCTCTT-ATAATGT---GGCTGATGCCATGTCCTAA
* *
102312285 ACATGGTCTTACACTAGCTCTTGTCTCAATGCCGATGTCATGTCCCAAACATGGTCTTACACTGG
1 ACATGGTCTTACACTAGCTCTTGTATCAA-GCCGATGTCATGTCCCAGACATGGTCTTACACTGG
102312350 CTCTTATAATGTGGCTGATG-CATGT-CTCAGA
65 CTCTTATAATGTGGCTGATGCCATGTCCT-A-A
102312381 A-AT-GTCTTACACTAGC
1 ACATGGTCTTACACTAGC
102312397 ACACATGTCA
Statistics
Matches: 172, Mismatches: 19, Indels: 38
0.75 0.08 0.17
Matches are distributed among these distances:
92 5 0.03
94 17 0.10
95 72 0.42
96 15 0.09
97 5 0.03
98 34 0.20
99 7 0.04
100 17 0.10
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (95 bp):
ACATGGTCTTACACTAGCTCTTGTATCAAGCCGATGTCATGTCCCAGACATGGTCTTACACTGGC
TCTTATAATGTGGCTGATGCCATGTCCTAA
Found at i:102312375 original size:145 final size:143
Alignment explanation
Indices: 102312078--102312347 Score: 346
Period size: 145 Copynumber: 1.9 Consensus size: 143
102312068 AGATGTCAAC
* * ** * *
102312078 GCCATGTCCCGGACATGGTCTTACACTGACTCTCATGTATCGAGGCCGATGTCATGTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACACTAACTCTCAAATATCGAGGCCGATGCCATGTCCCAAACA
* * *
102312143 TGGTCTTACACTGGCTCTCATCTATTGTTGTCAATGCCATGTCCAATACATGGTCTTACACTCAC
66 TGGTCTTACACTAGCTCTCATCTA-T-ATGCCAATGCCATGTCCAATACATGGTCTTACACTCAC
102312208 ACATATCAAGCCGAT
129 ACATATCAAGCCGAT
* * *
102312223 GCCATGTCCCAGACATGGTCTTACACTAACTTTCAAATGTCGAGGCCGATGCCATGTCCTAAACA
1 GCCATGTCCCAGACATGGTCTTACACTAACTCTCAAATATCGAGGCCGATGCCATGTCCCAAACA
** * *
102312288 TGGTCTTACACTAGCTCTTGTCTCA-ATGCCGATGTCATGTCCCAA-ACATGGTCTTACACT
66 TGGTCTTACACTAGCTCTCATCT-ATATGCCAATGCCATGT-CCAATACATGGTCTTACACT
102312348 GGCTCTTATA
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
143 26 0.24
144 4 0.04
145 76 0.71
146 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (143 bp):
GCCATGTCCCAGACATGGTCTTACACTAACTCTCAAATATCGAGGCCGATGCCATGTCCCAAACA
TGGTCTTACACTAGCTCTCATCTATATGCCAATGCCATGTCCAATACATGGTCTTACACTCACAC
ATATCAAGCCGAT
Found at i:102318089 original size:18 final size:17
Alignment explanation
Indices: 102318064--102318109 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 17
102318054 TGGCTCACTT
102318064 TCTTTTTTTTTT-TTT-
1 TCTTTTTTTTTTCTTTA
102318079 TCCTTTGTTTTTTTCTTTA
1 T-CTTT-TTTTTTTCTTTA
102318098 TCTTTTTTTTTT
1 TCTTTTTTTTTT
102318110 AACTCATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 1 0.04
16 4 0.15
17 14 0.52
18 7 0.26
19 1 0.04
ACGTcount: A:0.02, C:0.11, G:0.02, T:0.85
Consensus pattern (17 bp):
TCTTTTTTTTTTCTTTA
Found at i:102321242 original size:19 final size:20
Alignment explanation
Indices: 102321220--102321264 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
102321210 TAAGCCCTTT
*
102321220 AAAAATTTA-AAAATTATTA
1 AAAAATTCATAAAATTATTA
102321239 AAAAA-TCATAAAATTATTA
1 AAAAATTCATAAAATTATTA
102321258 AAAAATT
1 AAAAATT
102321265 ATATATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 2 0.09
19 20 0.87
20 1 0.04
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAATTCATAAAATTATTA
Found at i:102328396 original size:20 final size:20
Alignment explanation
Indices: 102328371--102328434 Score: 74
Period size: 20 Copynumber: 3.2 Consensus size: 20
102328361 TATGGGTTAA
102328371 CACTTCAGTGTCTCTATTTG
1 CACTTCAGTGTCTCTATTTG
* *
102328391 CACTTCAGTGCCTCTATTTA
1 CACTTCAGTGTCTCTATTTG
** * *
102328411 CACTTTGGTGTCTTTGTTTG
1 CACTTCAGTGTCTCTATTTG
102328431 CACT
1 CACT
102328435 CTGGTGCCTC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.14, C:0.25, G:0.16, T:0.45
Consensus pattern (20 bp):
CACTTCAGTGTCTCTATTTG
Found at i:102328415 original size:40 final size:40
Alignment explanation
Indices: 102328370--102328481 Score: 95
Period size: 40 Copynumber: 2.8 Consensus size: 40
102328360 GTATGGGTTA
*
102328370 ACACTTCAGTGTCTCTATTTGCACTTCAGTGCCTCTATTT
1 ACACTTCAGTGTCTCTATTTGCACTTCAGTGCCTCTAATT
** * * *
102328410 ACACTTTGGTGTCTTTGTTTGCAC-TCTGGTGCCTCTAATT
1 ACACTTCAGTGTCTCTATTTGCACTTC-AGTGCCTCTAATT
* * *
102328450 GCA-TAATCA-TGCCTCTATTTGCACTACAGTGC
1 ACACT--TCAGTGTCTCTATTTGCACTTCAGTGC
102328482 TTTTGTATAG
Statistics
Matches: 54, Mismatches: 14, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
39 3 0.06
40 49 0.91
41 2 0.04
ACGTcount: A:0.18, C:0.26, G:0.16, T:0.40
Consensus pattern (40 bp):
ACACTTCAGTGTCTCTATTTGCACTTCAGTGCCTCTAATT
Found at i:102333656 original size:28 final size:28
Alignment explanation
Indices: 102333597--102333663 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 28
102333587 AAACAACATG
* * * *
102333597 CAGTAATAGTTTAGGCCTTAGCCCTATA
1 CAGTAACAGTATAGGCCTAAGCCCAATA
* *
102333625 CAGTAACAGTATAGGCCTAAGTCCAATT
1 CAGTAACAGTATAGGCCTAAGCCCAATA
*
102333653 CAGTATCAGTA
1 CAGTAACAGTA
102333664 CAGTGCAGTC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (28 bp):
CAGTAACAGTATAGGCCTAAGCCCAATA
Found at i:102333788 original size:23 final size:23
Alignment explanation
Indices: 102333762--102333807 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
102333752 GCCAACACAT
*
102333762 CAATATCGCAGCGAA-GCTGCTAA
1 CAATAACGCAGC-AATGCTGCTAA
102333785 CAATAACGCAGCAATGCTGCTAA
1 CAATAACGCAGCAATGCTGCTAA
102333808 TAACAGTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 2 0.10
23 19 0.90
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (23 bp):
CAATAACGCAGCAATGCTGCTAA
Found at i:102342118 original size:43 final size:42
Alignment explanation
Indices: 102342050--102342213 Score: 188
Period size: 42 Copynumber: 3.9 Consensus size: 42
102342040 TACTGTACCA
* * *
102342050 ATGCCATATCCTAAATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
* * * *
102342092 ATGCCAATAGCCCAGCTATGGCCTTAC-TCGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACAT-GTAATCTCATATCG
* * *
102342135 ATGCCATATCCCAGATATGGTCTTATACG-AAGTTTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAA-TCTCATATCG
*
102342177 ATGTCATATCCCAGATATGGTCTTACATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
102342214 GTAACCCTAA
Statistics
Matches: 100, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
41 2 0.02
42 63 0.63
43 35 0.35
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
Found at i:102345897 original size:46 final size:46
Alignment explanation
Indices: 102345847--102345937 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
102345837 TTACACTAAC
*
102345847 ACATCTCGTA-ACCGATACGTGTCCCAGACATATCTTACATTGGCTT
1 ACATCTCG-AGACCGATACATGTCCCAGACATATCTTACATTGGCTT
* * * *
102345893 ACATCTCGAGGCCGATGCATGTCCCAGACATGTTTTACATTGGCT
1 ACATCTCGAGACCGATACATGTCCCAGACATATCTTACATTGGCT
102345938 CTCGTCTCAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
45 1 0.03
46 38 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (46 bp):
ACATCTCGAGACCGATACATGTCCCAGACATATCTTACATTGGCTT
Found at i:102345953 original size:46 final size:45
Alignment explanation
Indices: 102345866--102346024 Score: 151
Period size: 46 Copynumber: 3.4 Consensus size: 45
102345856 AACCGATACG
* * *
102345866 TGTCCCAGACATATCTTACATTGGCT-TACATCTCGAGGCCGATGCA
1 TGTCCCAGACATGTCTTACATTGGCTCT-C-TCTCAATGCCGATGCA
* *
102345912 TGTCCCAGACATGTTTTACATTGGCTCTCGTCTCAATGCCGATTCCA
1 TGTCCCAGACATGTCTTACATTGGCTCTC-TCTCAATGCCGA-TGCA
* * * * *
102345959 TGTCCTAGACATGGTCTTACACTGGCTCT-TATAATATGGCTGATGCA
1 TGTCCCAGACAT-GTCTTACATTGGCTCTCTCTCA-AT-GCCGATGCA
102346006 TGTCCCAGACATGTCTTAC
1 TGTCCCAGACATGTCTTAC
102346025 GCTAGCACAC
Statistics
Matches: 94, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
46 45 0.48
47 31 0.33
48 18 0.19
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.32
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACATTGGCTCTCTCTCAATGCCGATGCA
Found at i:102352297 original size:21 final size:20
Alignment explanation
Indices: 102352259--102352298 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
102352249 CCCTTGAAAC
**
102352259 AGGGCACACGCCTGTGTGGA
1 AGGGCACACGCCCATGTGGA
102352279 AGGGCAACACGCCCATGTGG
1 AGGGC-ACACGCCCATGTGG
102352299 TCATTATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.12
Consensus pattern (20 bp):
AGGGCACACGCCCATGTGGA
Found at i:102353640 original size:46 final size:46
Alignment explanation
Indices: 102353536--102353751 Score: 197
Period size: 46 Copynumber: 4.7 Consensus size: 46
102353526 CATATCTGTA
* * * *
102353536 CCGATGCCATGTCCTAGACATGGTCTTACACT-G-ACACATCTTGTA-G
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCG-AGG
* * *
102353582 CCAATGCGTGTCCCAGACATGTCTTACATTGGCT-TACATCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGG
* * * * *
102353628 CCGATGCATGTCCTAGACATGTCTTACATTGGCTCTCGTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGG
* ** *
102353674 TCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACGTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCGAGG
*
102353722 CCGATGCATGTCCCAGACATGTTTTACACT
1 CCGATGCATGTCCCAGACATGTCTTACACT
102353752 AGCACACAAA
Statistics
Matches: 139, Mismatches: 24, Indels: 14
0.79 0.14 0.08
Matches are distributed among these distances:
44 9 0.06
45 14 0.10
46 64 0.46
47 28 0.20
48 24 0.17
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGG
Found at i:102353724 original size:94 final size:94
Alignment explanation
Indices: 102353439--102353751 Score: 295
Period size: 94 Copynumber: 3.3 Consensus size: 94
102353429 GGCTATAATA
**
102353439 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATC-CATCAAGTCGATGCCATGTCTTAG
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCTC-TCAAGTCGATG-CATGTCCCAG
* * * *
102353503 ACATGATCTTACACTAGCTTTCACATATC-TGTA
64 ACATGGTCTTACACTGGC--TCTCATATCGTG-G
* * ** * * *
102353536 CCGATGCCATGTCCTAGACATGGTCTTACACTGACACATCT-TGTAGCCAATGCGTGTCCCAGAC
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCTCTCAAGTCGATGCATGTCCCAGAC
* * *
102353600 AT-GTCTTACATTGGCT-TACATCTCGAGG
66 ATGGTCTTACACTGGCTCT-CATATCGTGG
*
102353628 CCGATG-CATGTCCTAGACAT-GTCTTACATTGGCTC-TCGTCTCAATGTCGATGTCATGTCCCA
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATC-TCTCAA-GTCGATG-CATGTCCCA
*
102353690 GACATGGTCTTACACTGGCTCTCATAACGTGG
63 GACATGGTCTTACACTGGCTCTCATATCGTGG
* *
102353722 CCGATG-CATGTCCCAGACAT-GTTTTACACT
1 CCGATGCCATGTCCTAGACATGGTCTTACACT
102353752 AGCACACAAA
Statistics
Matches: 176, Mismatches: 31, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
89 2 0.01
90 13 0.07
91 16 0.09
92 17 0.10
93 14 0.08
94 57 0.32
95 12 0.07
96 7 0.04
97 38 0.22
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (94 bp):
CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCTCTCAAGTCGATGCATGTCCCAGAC
ATGGTCTTACACTGGCTCTCATATCGTGG
Found at i:102353732 original size:47 final size:48
Alignment explanation
Indices: 102353439--102353751 Score: 213
Period size: 47 Copynumber: 6.7 Consensus size: 48
102353429 GGCTATAATA
* **
102353439 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATC-CATC-AAG
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTC-TCATATCGTGG
* * * * * *
102353486 TCGATGCCATGTCTTAGACATGATCTTACACTAGCTTTCACATATC-TGTA
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGGC--TCTCATATCGTG-G
* * *
102353536 CCGATGCCATGTCCTAGACATGGTCTTACACTGACACATC-T-T-GTAG
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTC-TCATATCGTGG
* * * * * *
102353582 CCAATG-CGTGTCCCAGACAT-GTCTTACATTGGCT-TACATCTCGAGG
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCT-CATATCGTGG
* * * *
102353628 CCGATG-CATGTCCTAGACAT-GTCTTACATTGGCTCTCGTCTCAAT-G
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATC-GTGG
* * * *
102353674 TCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACGTGG
1 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATCGTGG
* *
102353722 CCGATG-CATGTCCCAGACAT-GTTTTACACT
1 CCGATGCCATGTCCTAGACATGGTCTTACACT
102353752 AGCACACAAA
Statistics
Matches: 210, Mismatches: 41, Indels: 31
0.74 0.15 0.11
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 12 0.06
45 13 0.06
46 58 0.28
47 62 0.30
48 27 0.13
49 6 0.03
50 30 0.14
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (48 bp):
CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATCGTGG
Found at i:102356633 original size:18 final size:18
Alignment explanation
Indices: 102356610--102356648 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
102356600 AAGGGTTAAT
102356610 TTTAAT-TTTTTAATTTTA
1 TTTAATATTTTT-ATTTTA
102356628 TTTAATATTTTTATTTTA
1 TTTAATATTTTTATTTTA
102356646 TTT
1 TTT
102356649 TTGTAACTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTAATATTTTTATTTTA
Found at i:102356650 original size:31 final size:32
Alignment explanation
Indices: 102356608--102356672 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 32
102356598 GTAAGGGTTA
* *
102356608 ATTTTAATTTTT-TAATTTTATTTAATATTTTT
1 ATTTTAATTTTTGTAA-CTTAATTAATATTTTT
102356640 ATTTT-ATTTTTGTAACTTAATTAATATTTTT
1 ATTTTAATTTTTGTAACTTAATTAATATTTTT
102356671 AT
1 AT
102356673 AATTTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
31 22 0.73
32 8 0.27
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (32 bp):
ATTTTAATTTTTGTAACTTAATTAATATTTTT
Found at i:102358657 original size:61 final size:60
Alignment explanation
Indices: 102358544--102358690 Score: 142
Period size: 61 Copynumber: 2.5 Consensus size: 60
102358534 TATTGATTTA
* * * * *
102358544 TTTTTTAATATATTTGTACAAATTGTTTTTATATTGTTTTATTCAATGAAATAGAAGTTT
1 TTTTTTAATATATTTATACAAATTATTTTTATATTATTTCATTCAATAAAATAGAAGTTT
* *
102358604 TTTTTTGAATAT-TTTAATACAAATTATTTTTATGTTATTTCATTTAATAAAAT---AG-TT
1 TTTTTT-AATATATTT-ATACAAATTATTTTTATATTATTTCATTCAATAAAATAGAAGTTT
* * * *
102358661 CTTTTGAATATGTTTGTACAAATTATTTTT
1 TTTTTTAATATATTTATACAAATTATTTTT
102358691 TCATTGTCTC
Statistics
Matches: 74, Mismatches: 10, Indels: 10
0.79 0.11 0.11
Matches are distributed among these distances:
56 19 0.26
57 9 0.12
58 2 0.03
60 9 0.12
61 35 0.47
ACGTcount: A:0.32, C:0.04, G:0.08, T:0.56
Consensus pattern (60 bp):
TTTTTTAATATATTTATACAAATTATTTTTATATTATTTCATTCAATAAAATAGAAGTTT
Found at i:102361852 original size:14 final size:14
Alignment explanation
Indices: 102361830--102361863 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
102361820 TTACTGAAAA
*
102361830 GAGCATCCAACTGG
1 GAGCTTCCAACTGG
102361844 GAGCTTCCAACTGG
1 GAGCTTCCAACTGG
102361858 GAGCTT
1 GAGCTT
102361864 TTTCAGTACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Consensus pattern (14 bp):
GAGCTTCCAACTGG
Found at i:102362068 original size:153 final size:154
Alignment explanation
Indices: 102361858--102362152 Score: 389
Period size: 153 Copynumber: 1.9 Consensus size: 154
102361848 TTCCAACTGG
* **
102361858 GAGCTTTTTCAGTACTTTTGCTGACAGTGCATCTTACTTGAAGCATTTTTGAACCCCAACTATCA
1 GAGCTTTTTCAGTACTTTTGCTGAAAGTGCATCCCACTTGAAGCATTTTTGAACCCCAACTATCA
** * * *
102361923 AATTTCTTGTGAATCCCAAGATATTTTGTCA-ATACCATCTTCT-AAAATATATTTTTTAGAATT
66 AATTTCCCGAGAATCCCAAGATATTTTGTCAGA-ACCATCTTCTCAAAAT-TATTTTTCAGAATC
102361986 AACAATACAAAAAAGAGTCCAGTTAA
129 AACAATACAAAAAAGAGTCCAGTTAA
** ** *
102362012 GAGCTTTTT-AGTACTTTTGCTGAAAGTGCATCCCGGTTGAAGTGTTTTTTAACCCCAACTATCA
1 GAGCTTTTTCAGTACTTTTGCTGAAAGTGCATCCCACTTGAAGCATTTTTGAACCCCAACTATCA
* * *
102362076 GATTTCCCGAGAATCCCGAGATATTTTTTCAGAACCATCTTCTCAAAATTATTTTTCAGAATCAA
66 AATTTCCCGAGAATCCCAAGATATTTTGTCAGAACCATCTTCTCAAAATTATTTTTCAGAATCAA
* *
102362141 CGATGCAAAAAA
131 CAATACAAAAAA
102362153 AGCGTCTAGC
Statistics
Matches: 121, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
153 106 0.88
154 15 0.12
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (154 bp):
GAGCTTTTTCAGTACTTTTGCTGAAAGTGCATCCCACTTGAAGCATTTTTGAACCCCAACTATCA
AATTTCCCGAGAATCCCAAGATATTTTGTCAGAACCATCTTCTCAAAATTATTTTTCAGAATCAA
CAATACAAAAAAGAGTCCAGTTAA
Found at i:102362969 original size:6 final size:6
Alignment explanation
Indices: 102362920--102362952 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
102362910 TCTGAAATTC
102362920 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
102362953 AAATCTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:102364049 original size:12 final size:12
Alignment explanation
Indices: 102364032--102364057 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
102364022 GATATCATGT
102364032 AAAAAATTATAA
1 AAAAAATTATAA
102364044 AAAAAATTATAA
1 AAAAAATTATAA
102364056 AA
1 AA
102364058 CTTACTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAAAATTATAA
Found at i:102364534 original size:50 final size:50
Alignment explanation
Indices: 102364439--102364536 Score: 142
Period size: 50 Copynumber: 2.0 Consensus size: 50
102364429 CTTTAGTTCT
* * * * *
102364439 TTCCATATGATGCCATAACCCACCAGTTATGGTCTTATACGATATGGTCA
1 TTCCACATGATGCCACAACCCACCAGCTATGGTCTTACACAATATGGTCA
*
102364489 TTCCACATGATGCCACAACCCACCAGCTATGGTCTTACATAATATGGT
1 TTCCACATGATGCCACAACCCACCAGCTATGGTCTTACACAATATGGT
102364537 GCCATGGACT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (50 bp):
TTCCACATGATGCCACAACCCACCAGCTATGGTCTTACACAATATGGTCA
Found at i:102369819 original size:7 final size:7
Alignment explanation
Indices: 102369809--102369835 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
102369799 GATAATGCCC
102369809 GATAAAT
1 GATAAAT
102369816 GATAAAT
1 GATAAAT
102369823 GATAAAT
1 GATAAAT
102369830 GATAAA
1 GATAAA
102369836 AAGGTTACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (7 bp):
GATAAAT
Found at i:102369919 original size:51 final size:51
Alignment explanation
Indices: 102369853--102369963 Score: 204
Period size: 51 Copynumber: 2.2 Consensus size: 51
102369843 CTTTTATGCT
*
102369853 TGAAATGAATGTGGAATGTGTTTACTTGAATTATATGAATGTTATGGATGTA
1 TGAAAT-AACGTGGAATGTGTTTACTTGAATTATATGAATGTTATGGATGTA
102369905 TGAAATAACGTGGAATGTGTTTACTTGAATTATATGAATGTTATGGATGTA
1 TGAAATAACGTGGAATGTGTTTACTTGAATTATATGAATGTTATGGATGTA
102369956 TGAAATAA
1 TGAAATAA
102369964 TCACATGCCC
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
51 52 0.90
52 6 0.10
ACGTcount: A:0.35, C:0.03, G:0.23, T:0.39
Consensus pattern (51 bp):
TGAAATAACGTGGAATGTGTTTACTTGAATTATATGAATGTTATGGATGTA
Found at i:102371536 original size:41 final size:42
Alignment explanation
Indices: 102371473--102371551 Score: 115
Period size: 41 Copynumber: 1.9 Consensus size: 42
102371463 AGAATTAATC
* *
102371473 ACACGGGTAGAGACACGGGCGTGTGTCTCAGCCGTGTGTGCT
1 ACACGGCTAGAGACACAGGCGTGTGTCTCAGCCGTGTGTGCT
**
102371515 ACACGGCTAGA-ACACAGGCGTGTGTCTTGGCCGTGTG
1 ACACGGCTAGAGACACAGGCGTGTGTCTCAGCCGTGTG
102371552 AAACCTGCAC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
41 23 0.70
42 10 0.30
ACGTcount: A:0.18, C:0.24, G:0.37, T:0.22
Consensus pattern (42 bp):
ACACGGCTAGAGACACAGGCGTGTGTCTCAGCCGTGTGTGCT
Found at i:102388818 original size:22 final size:21
Alignment explanation
Indices: 102388767--102388820 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
102388757 CGACCTCTAG
**
102388767 CACGGGCGTGTCCCAGGGTCA
1 CACGGGCGTGTCCCAGGACCA
* * *
102388788 CATGAGCGTGTCCCTTGGACCA
1 CACGGGCGTGTCCC-AGGACCA
102388810 CACGGGCGTGT
1 CACGGGCGTGT
102388821 GAGCCCTGCA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.15, C:0.31, G:0.35, T:0.19
Consensus pattern (21 bp):
CACGGGCGTGTCCCAGGACCA
Found at i:102390140 original size:41 final size:38
Alignment explanation
Indices: 102390093--102390193 Score: 121
Period size: 41 Copynumber: 2.6 Consensus size: 38
102390083 TGAATATAAT
* *
102390093 AATTATAATTACCATAATTATAATAATGTTTGACCAACAA
1 AATTATAATTACAATAATTATAATAATATTTGACC--CAA
* * * *
102390133 AACTTATAATTATAGTAATTATAATAATATTTGATCCTA
1 AA-TTATAATTACAATAATTATAATAATATTTGACCCAA
102390172 AATTATAATTACAATAATTATA
1 AATTATAATTACAATAATTATA
102390194 CAAGGATTTC
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
38 18 0.35
39 4 0.08
40 2 0.04
41 28 0.54
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.40
Consensus pattern (38 bp):
AATTATAATTACAATAATTATAATAATATTTGACCCAA
Found at i:102391838 original size:26 final size:24
Alignment explanation
Indices: 102391808--102391855 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
102391798 AATAAAAAAA
*
102391808 TTAAAAATATAATAAATCAAATATAT
1 TTAAAAACATAA-AAA-CAAATATAT
102391834 TTAAAAACATAAAAACAAATAT
1 TTAAAAACATAAAAACAAATAT
102391856 TAAGACAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 3 0.14
26 11 0.52
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (24 bp):
TTAAAAACATAAAAACAAATATAT
Found at i:102391875 original size:21 final size:22
Alignment explanation
Indices: 102391842--102391884 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
102391832 ATTTAAAAAC
* *
102391842 ATAAAAACAAATATTAAGACAA
1 ATAAAAACAAATACTAAAACAA
*
102391864 ATAAAAA-TAATACTAAAACAA
1 ATAAAAACAAATACTAAAACAA
102391885 TTCTTAAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.70, C:0.09, G:0.02, T:0.19
Consensus pattern (22 bp):
ATAAAAACAAATACTAAAACAA
Found at i:102395193 original size:8 final size:8
Alignment explanation
Indices: 102395168--102395223 Score: 71
Period size: 8 Copynumber: 7.2 Consensus size: 8
102395158 CTTAAACTCT
*
102395168 AAACCCGA
1 AAACCCTA
102395176 AAACCCTA
1 AAACCCTA
*
102395184 AAACCATA
1 AAACCCTA
*
102395192 AAACCTTA
1 AAACCCTA
102395200 AAACCCT-
1 AAACCCTA
102395207 AAACCCT-
1 AAACCCTA
102395214 AAACCCTA
1 AAACCCTA
102395222 AA
1 AA
102395224 CTCTAAACCC
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
7 14 0.33
8 29 0.67
ACGTcount: A:0.52, C:0.34, G:0.02, T:0.12
Consensus pattern (8 bp):
AAACCCTA
Found at i:102395212 original size:7 final size:7
Alignment explanation
Indices: 102395153--102395233 Score: 72
Period size: 7 Copynumber: 11.0 Consensus size: 7
102395143 TTTTCCACCA
*
102395153 TAAACCT
1 TAAACCC
*
102395160 TAAACTC
1 TAAACCC
102395167 TAAACCC
1 TAAACCC
*
102395174 GAAAACCC
1 -TAAACCC
*
102395182 TAAAACCA
1 T-AAACCC
*
102395190 TAAAACCT
1 T-AAACCC
102395198 TAAAACCC
1 T-AAACCC
102395206 TAAACCC
1 TAAACCC
102395213 TAAACCC
1 TAAACCC
*
102395220 TAAACTC
1 TAAACCC
102395227 TAAACCC
1 TAAACCC
102395234 AGAGATCTTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
7 36 0.58
8 26 0.42
ACGTcount: A:0.47, C:0.35, G:0.01, T:0.17
Consensus pattern (7 bp):
TAAACCC
Found at i:102397666 original size:20 final size:20
Alignment explanation
Indices: 102397600--102397666 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
102397590 ATTTTGATAA
*
102397600 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
102397620 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
102397640 ACATGATATGTATGATAGGC
1 ACATGATATGTATGATATGC
102397660 ACATGAT
1 ACATGAT
102397667 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:102397840 original size:73 final size:72
Alignment explanation
Indices: 102397715--102397887 Score: 269
Period size: 73 Copynumber: 2.4 Consensus size: 72
102397705 GGAGGAAGTG
* *
102397715 CAAAAGGGCTTATGCCCCAATTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTTATGC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT--AAAAGGGCTTATGC
*
102397780 CTCAGTTAT
64 CCCAGTTAT
102397789 CAAAA-GGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCC
102397853 CAGTTAT
66 CAGTTAT
*
102397860 TAAAAGGGCTT-TCGCCCCAGTTATTAAA
1 CAAAAGGGCTTAT-GCCCCAGTTATTAAA
102397888 CGAGGCTAGG
Statistics
Matches: 93, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
71 27 0.29
72 20 0.22
73 41 0.44
74 5 0.05
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (72 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCC
CAGTTAT
Found at i:102397884 original size:24 final size:24
Alignment explanation
Indices: 102397716--102397887 Score: 267
Period size: 24 Copynumber: 7.1 Consensus size: 24
102397706 GAGGAAGTGC
* *
102397716 AAAAGGGCTTATGCCCCAATTATC
1 AAAAGGGCTTATGCCCCAGTTATT
102397740 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
102397764 AAAAAAGGGCTTATGCCTCAGTTATC
1 --AAAAGGGCTTATGCCCCAGTTATT
102397790 AAAA-GGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
102397813 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
102397837 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
102397861 AAAAGGGCTT-TCGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
102397885 AAA
1 AAA
102397888 CGAGGCTAGG
Statistics
Matches: 138, Mismatches: 6, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
23 22 0.16
24 94 0.68
26 22 0.16
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:102400986 original size:39 final size:39
Alignment explanation
Indices: 102400932--102401009 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
102400922 CGAAGAGGAG
102400932 GAGATAATGGTCATAGGGGAACGAAGGGATTATTTGTCC
1 GAGATAATGGTCATAGGGGAACGAAGGGATTATTTGTCC
*
102400971 GAGATAATGGTCATAGGGGAATGAAGGGATTATTTGTCC
1 GAGATAATGGTCATAGGGGAACGAAGGGATTATTTGTCC
102401010 AACGTTGTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.31, C:0.09, G:0.33, T:0.27
Consensus pattern (39 bp):
GAGATAATGGTCATAGGGGAACGAAGGGATTATTTGTCC
Found at i:102404412 original size:40 final size:40
Alignment explanation
Indices: 102404321--102404484 Score: 167
Period size: 40 Copynumber: 4.1 Consensus size: 40
102404311 CGGAGTTTAA
** * *
102404321 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGA-CATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTC-GGATCTTAGT
* *
102404361 CCAGTTATAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGT
*
102404401 CCGGATTTAGTAACTCGCAC-AATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGT
* * *
102404440 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGA-CTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGT
102404480 CCGGA
1 CCGGA
102404485 CATCATTCGA
Statistics
Matches: 106, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.33
40 66 0.62
41 5 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGT
Found at i:102416026 original size:29 final size:29
Alignment explanation
Indices: 102415993--102416066 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
102415983 GTGACGAGAT
102415993 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
102416022 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
102416051 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
102416067 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:102416082 original size:29 final size:29
Alignment explanation
Indices: 102416050--102416125 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
102416040 CTGGAAATAT
* *
102416050 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
102416079 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
102416108 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
102416126 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:102416093 original size:58 final size:58
Alignment explanation
Indices: 102415993--102416125 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
102415983 GTGACGAGAT
* * * * * *
102415993 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
102416051 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
102416109 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
102416126 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:102420977 original size:38 final size:35
Alignment explanation
Indices: 102420916--102421033 Score: 126
Period size: 31 Copynumber: 3.5 Consensus size: 35
102420906 TCAATCATGC
*
102420916 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
*
102420955 ACTGGGCCGAAGCATTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
102420986 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
102421017 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
102421034 ACTGTAAACG
Statistics
Matches: 76, Mismatches: 3, Indels: 8
0.87 0.03 0.09
Matches are distributed among these distances:
31 48 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 13 0.17
39 11 0.14
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:102421030 original size:31 final size:31
Alignment explanation
Indices: 102420939--102421033 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
102420929 CCTTTTCATA
* *
102420939 TTTCATATTTCATAATACTGGGCCGAAGCAT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
102420970 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
102421001 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
102421032 TT
1 TT
102421034 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:102421276 original size:24 final size:24
Alignment explanation
Indices: 102421225--102421367 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
102421215 GCTTTATCAT
*
102421225 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
102421250 ATAACTGGGGCAAAATCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
102421274 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
102421297 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
102421321 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
102421345 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
102421368 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
23 23 0.21
24 75 0.69
25 11 0.10
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:102421304 original size:47 final size:48
Alignment explanation
Indices: 102421225--102421366 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 48
102421215 GCTTTATCAT
* * *
102421225 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAATCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
102421274 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
102421321 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
102421367 TTCACTTCCT
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
47 43 0.50
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:102421325 original size:71 final size:72
Alignment explanation
Indices: 102421224--102421367 Score: 211
Period size: 71 Copynumber: 2.0 Consensus size: 72
102421214 TGCTTTATCA
* *
102421224 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAATCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
102421289 GCCCTTT
66 GCCCTTT
* * **
102421296 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
102421359 AGCCCTTT
65 AGCCCTTT
102421367 T
1 T
102421368 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 52 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:102421443 original size:20 final size:20
Alignment explanation
Indices: 102421418--102421477 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
102421408 TATGATTACC
102421418 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
102421438 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
102421458 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
102421478 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:102421552 original size:25 final size:25
Alignment explanation
Indices: 102421520--102421567 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102421510 ATACATAAAC
* * *
102421520 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
102421545 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
102421568 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:102422789 original size:27 final size:27
Alignment explanation
Indices: 102422727--102422791 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
102422717 GGGCATATTC
102422727 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
102422754 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
102422781 GTCTTTTTACC
1 GTCATTTTACC
102422792 TAATAGGGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:102422958 original size:27 final size:27
Alignment explanation
Indices: 102422928--102423240 Score: 237
Period size: 27 Copynumber: 11.6 Consensus size: 27
102422918 GTAACTTTGT
102422928 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * * **
102422955 AAAT-TGAGGTTATTTCGGTAATTTTGT
1 AAATCAG-GGGTATTTTGGTAATTTTAC
**** * *
102422982 AAATC-GAGGGTAAAACGGTAATTCTAT
1 AAATCAG-GGGTATTTTGGTAATTTTAC
*
102423009 AAATC-GAGGGTACTTTGGTAATTTTAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* ***
102423036 AAGTC-GAGGGTATTTCAATAATTTTAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
** ** *
102423063 AGGTC-GAGGGTATTTCAGTAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
*
102423090 AAATTAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
102423117 AAA-CTAGGGGTATTTTGGTAATTTTAC
1 AAATC-AGGGGTATTTTGGTAATTTTAC
*
102423144 AAA-CTAGGGGTATTTTGGTAATTTTAT
1 AAATC-AGGGGTATTTTGGTAATTTTAC
* * *
102423171 AAACCAAGGGTATTTTAGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
*
102423198 AAA-CTAGGGGTATTTTGGTAATTTTAT
1 AAATC-AGGGGTATTTTGGTAATTTTAC
* *
102423225 AAACCAAGGGTATTTT
1 AAATCAGGGGTATTTT
102423241 AAACATGGAT
Statistics
Matches: 239, Mismatches: 40, Indels: 14
0.82 0.14 0.05
Matches are distributed among these distances:
26 2 0.01
27 234 0.98
28 3 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:102422985 original size:54 final size:54
Alignment explanation
Indices: 102422907--102423239 Score: 273
Period size: 54 Copynumber: 6.2 Consensus size: 54
102422897 TAAAAAGTCA
* * ** *
102422907 AGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCG
* ** **** * *
102422961 AGGTTATTTCGGTAATTTTGTAAATC-GAGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAATCG
* *** **
102423015 AGGGTACTTT-GGTAATTTTACAAGTC-GAGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTA-TTTCGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAATCG
* * * *
102423069 AGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCG
* * * *
102423122 AGGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTATAAACCA
1 A-GGGTATTTCGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAATCG
** * * *
102423177 AGGGTATTTTAGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTCGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAATCG
102423231 AGGGTATTT
1 AGGGTATTT
102423240 TAAACATGGA
Statistics
Matches: 232, Mismatches: 40, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
53 6 0.03
54 220 0.95
55 6 0.03
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCG
Found at i:102423084 original size:81 final size:80
Alignment explanation
Indices: 102422889--102423200 Score: 252
Period size: 81 Copynumber: 3.8 Consensus size: 80
102422879 TGGGACTTCT
* * * *
102422889 ATAATTTTTAAAAAGTCAAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTA
1 ATAA-TTTTACAAA-TCGAGGGTATTTCAGTAA-TTTATAAATCAGGGGTATTTTGGTAATTTTA
* * *
102422954 CAAATTGAGGTTATTTCG
63 CAAATCGAGGGTATTTCA
* ** *** * *
102422972 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTACTTTGGTAATTTTAC
1 ATAATTTTACAAATCGAGGGTATTTCAGTAATT-TATAAATCAG-GGGTATTTTGGTAATTTTAC
*
102423036 AAGTCGAGGGTATTTCA
64 AAATCGAGGGTATTTCA
** * *
102423053 ATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACA
1 ATAATTTTACAAATCGAGGGTATTTCAGTAATTT-ATAAATCAGGGGTATTTTGGTAATTTTACA
* **
102423118 AA-CTAGGGGTATTTTG
65 AATCGA-GGGTATTTCA
* * ** * * *
102423134 GTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTAC
1 ATAATTTTACAAATCGA-GGGTATTTCAGTAA-TTTATAAATCAGGGGTATTTTGGTAATTTTAC
102423198 AAA
64 AAA
102423201 CTAGGGGTAT
Statistics
Matches: 181, Mismatches: 41, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
80 8 0.04
81 159 0.88
82 11 0.06
83 3 0.02
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (80 bp):
ATAATTTTACAAATCGAGGGTATTTCAGTAATTTATAAATCAGGGGTATTTTGGTAATTTTACAA
ATCGAGGGTATTTCA
Found at i:102423240 original size:54 final size:54
Alignment explanation
Indices: 102423069--102423241 Score: 283
Period size: 54 Copynumber: 3.2 Consensus size: 54
102423059 TTACAGGTCG
* * * * *
102423069 AGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
* *
102423123 GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
102423177 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
102423231 AGGGTATTTTA
1 AGGGTATTTTA
102423242 AACATGGATA
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 110 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
Found at i:102425713 original size:31 final size:31
Alignment explanation
Indices: 102425622--102425716 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
102425612 CCTTTTCATA
* *
102425622 TTTCATATTTCATAATACTGGGCCGAAGCAT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
102425653 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
102425684 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
102425715 TT
1 TT
102425717 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:102425958 original size:24 final size:24
Alignment explanation
Indices: 102425907--102426049 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
102425897 GCTTTATCAT
*
102425907 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
102425932 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
102425956 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
102425979 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
102426003 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
102426027 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
102426050 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:102425986 original size:47 final size:48
Alignment explanation
Indices: 102425907--102426048 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
102425897 GCTTTATCAT
* *
102425907 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
102425956 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
102426003 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
102426049 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:102426007 original size:71 final size:72
Alignment explanation
Indices: 102425906--102426049 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
102425896 TGCTTTATCA
*
102425906 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
102425971 GCCCTTT
66 GCCCTTT
* * **
102425978 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
102426041 AGCCCTTT
65 AGCCCTTT
102426049 T
1 T
102426050 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:102426125 original size:20 final size:20
Alignment explanation
Indices: 102426100--102426159 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
102426090 TATGATTACC
102426100 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
102426120 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
102426140 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
102426160 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:102426234 original size:25 final size:25
Alignment explanation
Indices: 102426202--102426249 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102426192 ATACATAAAC
* * *
102426202 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
102426227 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
102426250 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:102427471 original size:27 final size:27
Alignment explanation
Indices: 102427394--102427473 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
102427384 TCATACGGAA
102427394 CATA-AGGGCATATT-C-GTCATTTTAC
1 CATACAGGGC-TATTACGGTCATTTTAC
* *
102427419 CATACAGGGGTATTACGGTCACTTTAC
1 CATACAGGGCTATTACGGTCATTTTAC
* *
102427446 CCTACAAGGGCT-TTACGGTCTTTTTAC
1 CATAC-AGGGCTATTACGGTCATTTTAC
102427473 C
1 C
102427474 TAATAGGGAT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
25 8 0.18
26 5 0.11
27 27 0.60
28 5 0.11
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.34
Consensus pattern (27 bp):
CATACAGGGCTATTACGGTCATTTTAC
Found at i:102427557 original size:27 final size:26
Alignment explanation
Indices: 102427527--102427582 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
102427517 GTAAATCAAC
*
102427527 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTACTTCTA-TAATTTT-T
*
102427554 AAACCAATGGTACTTCTATAATTTTT
1 AAACCAAAGGTACTTCTATAATTTTT
102427580 AAA
1 AAA
102427583 AAGTCAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (26 bp):
AAACCAAAGGTACTTCTATAATTTTT
Found at i:102427640 original size:27 final size:27
Alignment explanation
Indices: 102427610--102427919 Score: 222
Period size: 27 Copynumber: 11.5 Consensus size: 27
102427600 GTAACTTTGT
102427610 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * * **
102427637 AAAT-TGAGTGTATTTCGGTAATTTTGT
1 AAATCAG-GGGTATTTTGGTAATTTTAC
**** * *
102427664 AAATC-GAGGGTAAAACGGTAATTCTAT
1 AAATCAG-GGGTATTTTGGTAATTTTAC
*
102427691 AAATC-GAGGGTACTTTGGTAATTTTAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* ***
102427718 AAGTC-GAGGGTATTTCAATAATTTTAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
** ** *
102427745 AGGTC-GAGGGTATTTCAGTAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
*
102427772 AAATTAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
102427799 AAA-CTAGGGGTATTTTGGTAATTTTAC
1 AAATC-AGGGGTATTTTGGTAATTTTAC
* *
102427826 AAA-CTAGGGATATTTTGGTAATTTTAT
1 AAATC-AGGGGTATTTTGGTAATTTTAC
* * *
102427853 AAACCAAGGGTATTTTAGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
*
102427880 AAA-CTAGGGGTATTTTGGTAATTTTAT
1 AAATC-AGGGGTATTTTGGTAATTTTAC
* *
102427907 AAACCAAGGGTAT
1 AAATCAGGGGTAT
102427920 CTTAAACATG
Statistics
Matches: 234, Mismatches: 42, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.01
27 229 0.98
28 3 0.01
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.38
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:102427666 original size:54 final size:54
Alignment explanation
Indices: 102427589--102427919 Score: 260
Period size: 54 Copynumber: 6.1 Consensus size: 54
102427579 TAAAAAGTCA
* * ** *
102427589 AGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCG
* ** **** * *
102427643 AGTGTATTTCGGTAATTTTGTAAATC-GAGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAATCG
* *** **
102427697 AGGGTACTTT-GGTAATTTTACAAGTC-GAGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTA-TTTCGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAATCG
* * * *
102427751 AGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCG
* * * * *
102427804 AGGGGTATTTTGGTAATTTTACAAA-CTAGGGATATTTTGGTAATTTTATAAACCA
1 A-GGGTATTTCGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAATCG
** * * *
102427859 AGGGTATTTTAGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTCGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAATCG
102427913 AGGGTAT
1 AGGGTAT
102427920 CTTAAACATG
Statistics
Matches: 228, Mismatches: 42, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
53 6 0.03
54 216 0.95
55 6 0.03
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCG
Found at i:102427766 original size:81 final size:80
Alignment explanation
Indices: 102427562--102427882 Score: 252
Period size: 81 Copynumber: 3.9 Consensus size: 80
102427552 GTAAACCAAT
* * * * * *
102427562 GGTACTTCTATAATTTTTAAAAAGTCAAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTG
1 GGTATTTCAATAA-TTTTACAAA-TCGAGGGTATTTCAGTAA-TTTATAAATCAGGGGTATTTTG
*
102427627 GTAATTTTACAAATTGAG
63 GTAATTTTACAAATCGAG
* ** ** *** * *
102427645 TGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTACTTTGG
1 GGTATTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATT-TATAAATCAG-GGGTATTTTGG
*
102427709 TAATTTTACAAGTCGAG
64 TAATTTTACAAATCGAG
** * *
102427726 GGTATTTCAATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGT
1 GGTATTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTT-ATAAATCAGGGGTATTTTGGT
*
102427791 AATTTTACAAA-CTAGG
65 AATTTTACAAATCGA-G
*** * ** * * *
102427807 GGTATTTTGGTAATTTTACAAA-CTAGGGATATTTTGGTAATTTTATAAACCAAGGGTATTTTAG
1 GGTATTTCAATAATTTTACAAATCGAGGG-TATTTCAGTAA-TTTATAAATCAGGGGTATTTTGG
102427871 TAATTTTACAAA
64 TAATTTTACAAA
102427883 CTAGGGGTAT
Statistics
Matches: 187, Mismatches: 44, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
80 11 0.06
81 156 0.83
82 11 0.06
83 9 0.05
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (80 bp):
GGTATTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTTATAAATCAGGGGTATTTTGGTA
ATTTTACAAATCGAG
Found at i:102428902 original size:15 final size:16
Alignment explanation
Indices: 102428873--102428905 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
102428863 ATACATATAC
102428873 CAAATTAGATAAATTA
1 CAAATTAGATAAATTA
*
102428889 CAAA-TAGATGAATTA
1 CAAATTAGATAAATTA
102428904 CA
1 CA
102428906 TTCAACATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.55, C:0.09, G:0.09, T:0.27
Consensus pattern (16 bp):
CAAATTAGATAAATTA
Found at i:102429377 original size:21 final size:21
Alignment explanation
Indices: 102429353--102429404 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
102429343 CACACACCCA
*
102429353 TGTGGTCTAGGGACATGCCTG
1 TGTGGTCTAGGGACATGCCCG
*
102429374 TGTGGTCAAGGGACATGCCCG
1 TGTGGTCTAGGGACATGCCCG
102429395 TGTGGT-TAGG
1 TGTGGTCTAGG
102429405 CCATGTACTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 3 0.11
21 25 0.89
ACGTcount: A:0.15, C:0.17, G:0.40, T:0.27
Consensus pattern (21 bp):
TGTGGTCTAGGGACATGCCCG
Found at i:102445363 original size:40 final size:40
Alignment explanation
Indices: 102445273--102445533 Score: 271
Period size: 40 Copynumber: 6.5 Consensus size: 40
102445263 CTCAAGTAAT
* * * *
102445273 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
102445311 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
102445351 CTTCGGGACTTAGCCCGAATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
** * *
102445391 CTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
102445431 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGTACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
102445471 CTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAATGC
102445512 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
102445534 CATTCAAATA
Statistics
Matches: 184, Mismatches: 31, Indels: 13
0.81 0.14 0.06
Matches are distributed among these distances:
38 11 0.06
39 18 0.10
40 126 0.68
41 26 0.14
42 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:102445404 original size:80 final size:80
Alignment explanation
Indices: 102445273--102445533 Score: 303
Period size: 80 Copynumber: 3.3 Consensus size: 80
102445263 CTCAAGTAAT
* * * * * *
102445273 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
102445336 CACTAGCACAGATGC
66 CACTAGCACAAATGC
* * * *
102445351 CTTCGGGACTTAGCCCGAATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
102445415 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * * *
102445431 CTTCGGGTCTTAGCCCGGATATAGCAACTCGTACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
102445496 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
102445512 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
102445534 CATTCAAATA
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 93 0.61
81 33 0.22
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:102455980 original size:42 final size:42
Alignment explanation
Indices: 102455934--102456025 Score: 184
Period size: 42 Copynumber: 2.2 Consensus size: 42
102455924 ACGACCTAAC
102455934 CACATGCCTATGTGTCAGGCCGTGTGTAACACACGGTCTAGA
1 CACATGCCTATGTGTCAGGCCGTGTGTAACACACGGTCTAGA
102455976 CACATGCCTATGTGTCAGGCCGTGTGTAACACACGGTCTAGA
1 CACATGCCTATGTGTCAGGCCGTGTGTAACACACGGTCTAGA
102456018 CACATGCC
1 CACATGCC
102456026 CGTGTATCTG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (42 bp):
CACATGCCTATGTGTCAGGCCGTGTGTAACACACGGTCTAGA
Found at i:102456501 original size:16 final size:16
Alignment explanation
Indices: 102456480--102456511 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
102456470 AAGCATTACA
102456480 TGCTTAGTAAGTTTGT
1 TGCTTAGTAAGTTTGT
102456496 TGCTTAGTAAGTTTGT
1 TGCTTAGTAAGTTTGT
102456512 ATAATAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (16 bp):
TGCTTAGTAAGTTTGT
Found at i:102466050 original size:40 final size:40
Alignment explanation
Indices: 102465990--102466157 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
102465980 AAATTGAATG
* * *
102465990 ATATCCGGGCTAAG-CTCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGAC-CCGAAGGCAATTGTGCTGGTAATT
* * ***
102466030 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
102466070 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
102466110 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
102466150 ATATCCGG
1 ATATCCGG
102466158 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
39 3 0.03
40 99 0.94
41 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:102471755 original size:26 final size:26
Alignment explanation
Indices: 102471719--102471828 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
102471709 TGATACAAAT
*
102471719 TGATAATAGGTTAGGAAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
102471745 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
102471771 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
102471797 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
102471823 TGATAA
1 TGATAA
102471829 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:102475039 original size:14 final size:14
Alignment explanation
Indices: 102475020--102475047 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
102475010 CATGAACCAC
102475020 TCGGAATAATAATG
1 TCGGAATAATAATG
102475034 TCGGAATAATAATG
1 TCGGAATAATAATG
102475048 AATTTACACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (14 bp):
TCGGAATAATAATG
Found at i:102475781 original size:18 final size:17
Alignment explanation
Indices: 102475747--102475781 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
102475737 CATAACAGCC
*
102475747 CACATTTTTCATTTATT
1 CACATTTTTCATATATT
102475764 CACATTTTTACATATATT
1 CACATTTTT-CATATATT
102475782 TTAATCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (17 bp):
CACATTTTTCATATATT
Found at i:102479459 original size:17 final size:18
Alignment explanation
Indices: 102479427--102479460 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
102479417 ATCCTAGCCC
*
102479427 TGTTTTTGATGTTCCTTA
1 TGTTTTTGATGATCCTTA
102479445 TGTTTTTGA-GATCCTT
1 TGTTTTTGATGATCCTT
102479461 GAAGCATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.12, C:0.12, G:0.18, T:0.59
Consensus pattern (18 bp):
TGTTTTTGATGATCCTTA
Found at i:102481619 original size:47 final size:46
Alignment explanation
Indices: 102481556--102481772 Score: 169
Period size: 46 Copynumber: 4.7 Consensus size: 46
102481546 TTTGTATGCT
*
102481556 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCC
* * *
102481602 AGTGAAAGACCATGTCTGGGACATGGCTTC-GACAC-TGA-GACGAGATCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATGATGA-GAG--CC
* * * *
102481650 AATGTAAGACATGTCTGGGACATGCATTGGCCTCAAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATG-AGAGCC
* * ** * *
102481696 AGTGTAAGACATGTCTAGTACATGCATCGGTTAC--GA-GAGGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGA-GAGCC
*
102481740 AGTGTAAGACCATTTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
102481773 ACGGATATGT
Statistics
Matches: 134, Mismatches: 24, Indels: 26
0.73 0.13 0.14
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 13 0.10
45 13 0.10
46 52 0.39
47 35 0.26
48 17 0.13
49 1 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCC
Found at i:102482094 original size:42 final size:42
Alignment explanation
Indices: 102482035--102482116 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
102482025 AGTGGTATAG
102482035 GTACCTATTTGAAATGTATGAGATGTGAGCTCAATATATGTT
1 GTACCTATTTGAAATGTATGAGATGTGAGCTCAATATATGTT
102482077 GTACCTATTTGAAATGTATGAGATGTGAGCTCAATATATG
1 GTACCTATTTGAAATGTATGAGATGTGAGCTCAATATATG
102482117 CTATATGAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.32, C:0.10, G:0.22, T:0.37
Consensus pattern (42 bp):
GTACCTATTTGAAATGTATGAGATGTGAGCTCAATATATGTT
Found at i:102489455 original size:46 final size:43
Alignment explanation
Indices: 102489374--102489494 Score: 134
Period size: 46 Copynumber: 2.7 Consensus size: 43
102489364 CGAGATCCAA
* *
102489374 TGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTAAGCCAG
1 TGTAAGACATGTCTGGGACATGCATTG-GCTCGAGATGT--GCCAG
* **
102489420 TGTAAGACATGTTTGGGACATGCATTGGCTACGAGATGTGTTAG
1 TGTAAGACATGTCTGGGACATGCATTGGCT-CGAGATGTGCCAG
*
102489464 TGTAAGACCATGTCTAGGACATGGCATTGGC
1 TGTAAGA-CATGTCTGGGACAT-GCATTGGC
102489495 ACGGATATGT
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
44 10 0.15
45 14 0.22
46 41 0.63
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (43 bp):
TGTAAGACATGTCTGGGACATGCATTGGCTCGAGATGTGCCAG
Found at i:102489523 original size:50 final size:46
Alignment explanation
Indices: 102489418--102489538 Score: 133
Period size: 50 Copynumber: 2.6 Consensus size: 46
102489408 GATGTAAGCC
* *
102489418 AGTGTAAGA-CATGTTTGGGACAT-GCATTGGCTACGAGATGTGTT
1 AGTGTAAGACCATGTCTAGGACATGGCATTGGCTACGAGATGTGTT
*
102489462 AGTGTAAGACCATGTCTAGGACATGGCATTGGC-ACGGATATGTGAGATCT
1 AGTGTAAGACCATGTCTAGGACATGGCATTGGCTAC-GAGATGT--G-T-T
102489512 AGTGTAAGACCATGTC-AGGGACATGGC
1 AGTGTAAGACCATGTCTA-GGACATGGC
102489539 GTTTGTAATA
Statistics
Matches: 66, Mismatches: 3, Indels: 10
0.84 0.04 0.13
Matches are distributed among these distances:
44 9 0.14
45 14 0.21
46 14 0.21
48 1 0.02
49 2 0.03
50 26 0.39
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTAGGACATGGCATTGGCTACGAGATGTGTT
Found at i:102494686 original size:22 final size:22
Alignment explanation
Indices: 102494658--102494702 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
102494648 TATACATATC
102494658 ATAAATGAATTATGATAGTGTA
1 ATAAATGAATTATGATAGTGTA
102494680 ATAAATGAATTATGATAGTGTA
1 ATAAATGAATTATGATAGTGTA
102494702 A
1 A
102494703 CGACTCCTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.00, G:0.18, T:0.36
Consensus pattern (22 bp):
ATAAATGAATTATGATAGTGTA
Found at i:102499950 original size:25 final size:25
Alignment explanation
Indices: 102499900--102499950 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
102499890 TTAATTGAGG
* *
102499900 AATATGAAAGTTTTATGCAAGGTAA
1 AATATGAAAGTTTGATGCAAGATAA
*
102499925 AATATGAAAGTTTGATGCAATATAA
1 AATATGAAAGTTTGATGCAAGATAA
102499950 A
1 A
102499951 CATCTTTTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.47, C:0.04, G:0.18, T:0.31
Consensus pattern (25 bp):
AATATGAAAGTTTGATGCAAGATAA
Found at i:102500589 original size:50 final size:50
Alignment explanation
Indices: 102500505--102500717 Score: 149
Period size: 50 Copynumber: 4.4 Consensus size: 50
102500495 GTTGGGTTGA
* * * * * * *
102500505 TGAGATCCCGTATAATACCATATCTAGGATATGGCATCGGCATCGATATG
1 TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATCGGCATCAATATG
* * *
102500555 TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTAATA-C
1 TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATCGGCATCAATATG
* * * * * * *
102500604 T-AGAACATCGTGTAAAACCATAG-CTGGG-C-T---ATCAGCTTCGATATG
1 TGAGATC-CCATGTAAGACCAT-GTCTGGGACATGGCATCGGCATCAATATG
* * **
102500649 TGAGATCCCATGTAAGACCATGTCTGGCACATGGCATTGGCATCAATAAA
1 TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATCGGCATCAATATG
102500699 TG-G-TCCCATGTAAGACCAT
1 TGAGATCCCATGTAAGACCAT
102500718 ATCCAGGATA
Statistics
Matches: 122, Mismatches: 31, Indels: 22
0.70 0.18 0.13
Matches are distributed among these distances:
44 9 0.07
45 16 0.13
46 5 0.04
47 2 0.02
48 21 0.17
49 18 0.15
50 51 0.42
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (50 bp):
TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATCGGCATCAATATG
Found at i:102502393 original size:40 final size:40
Alignment explanation
Indices: 102502341--102502448 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
102502331 TATCACGATT
** *
102502341 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
102502381 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
102502421 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
102502449 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:102502408 original size:79 final size:80
Alignment explanation
Indices: 102502301--102502448 Score: 183
Period size: 79 Copynumber: 1.9 Consensus size: 80
102502291 TATGGTAACC
* * *
102502301 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
102502364 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
102502380 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
102502445 CCGG
66 CCGG
102502449 TTATAATTTC
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
78 1 0.02
79 30 0.53
80 26 0.46
ACGTcount: A:0.23, C:0.31, G:0.24, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:102510588 original size:79 final size:80
Alignment explanation
Indices: 102510505--102510652 Score: 183
Period size: 79 Copynumber: 1.9 Consensus size: 80
102510495 TATGGTAACC
* * *
102510505 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
102510568 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
102510584 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
102510649 CCGG
66 CCGG
102510653 TTATAATTTC
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
78 1 0.02
79 30 0.53
80 26 0.46
ACGTcount: A:0.23, C:0.31, G:0.24, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:102510597 original size:40 final size:40
Alignment explanation
Indices: 102510545--102510652 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
102510535 TATCACGATT
** *
102510545 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
102510585 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
102510625 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
102510653 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:102513581 original size:20 final size:20
Alignment explanation
Indices: 102513556--102513623 Score: 127
Period size: 20 Copynumber: 3.4 Consensus size: 20
102513546 CTGAGGACAT
102513556 GGGTGTGTCCCAAGCCACAC
1 GGGTGTGTCCCAAGCCACAC
*
102513576 GGGTGTGTCTCAAGCCACAC
1 GGGTGTGTCCCAAGCCACAC
102513596 GGGTGTGTCCCAAGCCACAC
1 GGGTGTGTCCCAAGCCACAC
102513616 GGGTGTGT
1 GGGTGTGT
102513624 GTCCTACCCA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.19
Consensus pattern (20 bp):
GGGTGTGTCCCAAGCCACAC
Found at i:102521539 original size:40 final size:40
Alignment explanation
Indices: 102521473--102521575 Score: 120
Period size: 39 Copynumber: 2.6 Consensus size: 40
102521463 AAATTGAATG
* * *
102521473 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ***
102521512 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
102521552 AT-TCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
102521576 TTTGTGCACG
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
39 34 0.63
40 20 0.37
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:102526797 original size:47 final size:47
Alignment explanation
Indices: 102526739--102527458 Score: 1156
Period size: 47 Copynumber: 15.3 Consensus size: 47
102526729 GTATGAGATA
* * * * *
102526739 TATATATGTGATAAGCCCGAATGACCAATGCGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
102526786 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
102526833 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
102526880 CATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
102526927 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
102526974 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
102527021 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
102527068 TATATATGTGATAAGGTCTAATGGCTGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
102527115 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
102527162 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
102527209 TATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTG
* *
102527256 CATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
102527303 TATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
102527350 CATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
102527397 TATATATGTGATAAGGCC-AAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAA-TGGCCGATGTGATGAATGTGAAAGTG
*
102527444 TATAAATGTGATAAG
1 TATATATGTGATAAG
102527459 TCCCGAAGGG
Statistics
Matches: 628, Mismatches: 42, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
46 4 0.01
47 622 0.99
48 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:102543570 original size:40 final size:39
Alignment explanation
Indices: 102543515--102543677 Score: 168
Period size: 40 Copynumber: 4.1 Consensus size: 39
102543505 TGAATGATAC
* *
102543515 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGTG-TTATAT
* *
102543555 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-ATGCTAG-TGTTATAT
* * *
102543595 CCGGGCTAAGACCCGAAGGCAATTATGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGTGT--TATAT
* * * *
102543635 CTGGGTTAAGACCCGAAGGCAATTGTGCTTGTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGTGTTATAT
102543674 CCGG
1 CCGG
102543678 TTAAATCCCG
Statistics
Matches: 101, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
38 1 0.01
39 9 0.09
40 85 0.84
41 6 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCAATTATGCTAGTGTTATAT
Found at i:102543648 original size:80 final size:79
Alignment explanation
Indices: 102543515--102543677 Score: 202
Period size: 80 Copynumber: 2.1 Consensus size: 79
102543505 TGAATGATAC
* * * ** *
102543515 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGCTAAGACCCGAAGGCAATTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATT-
102543579 GTGCGAGTTGTTATAT
65 GTGCGAG-TGTTATAT
* * *
102543595 CCGGGCTAAGACCCGAAGGCAATTATGCAAGTTACCAAATCTGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCAATTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
**
102543660 TGCTTGTGTTATAT
66 TGCGAGTGTTATAT
102543674 CCGG
1 CCGG
102543678 TTAAATCCCG
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
79 12 0.17
80 56 0.79
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGTTATAT
Found at i:102551077 original size:41 final size:41
Alignment explanation
Indices: 102550898--102551061 Score: 231
Period size: 41 Copynumber: 4.0 Consensus size: 41
102550888 ATCAGCGATA
*
102550898 TTCAGGCTT-TATGCCTAGCAGGCTTTATGCCGGTGAATTAT
1 TTCAGGCTTAT-TGCCTAGCAGGCTTTATGCCGGTGTATTAT
* * *
102550939 ATCAGGCTTATTTCCTAGCAGGCTTTATTCCGGTGTATTAT
1 TTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
102550980 TTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
1 TTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
* * * * *
102551021 TTCAGGCCTATTGCCTAGTAGGCTCTGTGCCAGTGTATTAT
1 TTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
102551062 ACTAGGCTTT
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
41 109 0.99
42 1 0.01
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.38
Consensus pattern (41 bp):
TTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
Found at i:102556204 original size:30 final size:29
Alignment explanation
Indices: 102556161--102556249 Score: 137
Period size: 29 Copynumber: 3.1 Consensus size: 29
102556151 TTATATTCAC
102556161 ATGG-CCTATTAGGCCCAAATCACATTTAT
1 ATGGCCCT-TTAGGCCCAAATCACATTTAT
102556190 ATGGCCCCTTTAGGCCCAAATCACATTTAT
1 ATGG-CCCTTTAGGCCCAAATCACATTTAT
*
102556220 GTGGCCCTTTAGGCCCAAATCACA-TTAT
1 ATGGCCCTTTAGGCCCAAATCACATTTAT
102556248 AT
1 AT
102556250 TCATGCTCAG
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
28 5 0.09
29 24 0.43
30 24 0.43
31 3 0.05
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (29 bp):
ATGGCCCTTTAGGCCCAAATCACATTTAT
Found at i:102561693 original size:41 final size:41
Alignment explanation
Indices: 102561428--102561673 Score: 359
Period size: 41 Copynumber: 6.0 Consensus size: 41
102561418 ATCAGTGATA
*
102561428 TTCAGGCTT-TATGCCTAGCAGGCTTTATGCCGGTGAATTAT
1 TTCAGGCTTAT-TGCCTAGCAGGCTTTATGCCGGTGTATTAT
* *
102561469 ATCAGGCTTATTGCCTAGCAGGCTTTTTGCCGGTGTATTAT
1 TTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
* *
102561510 TTCAGGCTTATTTCCTAGCAGGCTTTATGCTGGTGTATTAT
1 TTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
*
102561551 TTCAGGCTTATTGCCTAGCAAGCTTTATGCCGGTGTATTAT
1 TTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
** * *
102561592 TTCAGGCTTATAACCTAGCAGGCCTTATGTCGGTGTATTAT
1 TTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
* * *
102561633 TTCAGGCCTATTGCCTAGCAGGCTCTGTGCCGGTGTATTAT
1 TTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
102561674 ACTAGGCTTT
Statistics
Matches: 182, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
41 181 0.99
42 1 0.01
ACGTcount: A:0.18, C:0.20, G:0.24, T:0.38
Consensus pattern (41 bp):
TTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
Found at i:102563488 original size:20 final size:20
Alignment explanation
Indices: 102563463--102563500 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
102563453 TTGTATAGTG
102563463 GAAAATTTTCT-AAGTTCTAT
1 GAAAA-TTTCTAAAGTTCTAT
102563483 GAAAATTTCTAAAGTTCT
1 GAAAATTTCTAAAGTTCT
102563501 TGGTTTAGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (20 bp):
GAAAATTTCTAAAGTTCTAT
Found at i:102565655 original size:24 final size:24
Alignment explanation
Indices: 102565587--102565657 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 24
102565577 CAAGTTGCAT
*
102565587 CGTTATGGTCAAGCCACTCAATAA
1 CGTTGTGGTCAAGCCACTCAATAA
* * *
102565611 CGTTGTGGGCTAGACACTCAATAA
1 CGTTGTGGTCAAGCCACTCAATAA
*
102565635 CGTTGTGGTCAAGCCATTCAATA
1 CGTTGTGGTCAAGCCACTCAATA
102565658 TTGCAGTAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
CGTTGTGGTCAAGCCACTCAATAA
Found at i:102565829 original size:42 final size:42
Alignment explanation
Indices: 102565748--102565858 Score: 114
Period size: 42 Copynumber: 2.6 Consensus size: 42
102565738 TGTTAGTAGG
** * **
102565748 CATGCTTAACATGTGAATCAAATCTAAGGTCAACATAGTCTG
1 CATGCTTAACATGAAAATCAAATCTCAGGTCAACATAGTCAA
* * * * *
102565790 TATGCTTAACATGAAAATCAAATCTCAGTTTATCGTAGTCAA
1 CATGCTTAACATGAAAATCAAATCTCAGGTCAACATAGTCAA
* *
102565832 CATGCTTAGCATGCAAATCAAATCTCA
1 CATGCTTAACATGAAAATCAAATCTCA
102565859 ATTGATAAAT
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.30
Consensus pattern (42 bp):
CATGCTTAACATGAAAATCAAATCTCAGGTCAACATAGTCAA
Found at i:102574507 original size:49 final size:47
Alignment explanation
Indices: 102574418--102574582 Score: 172
Period size: 49 Copynumber: 3.4 Consensus size: 47
102574408 CTCCAAATAT
* * * * *
102574418 GGTCTTACACTGCCTCACACATCTAA-GTCAATGCCATGTCCCAGATA
1 GGTCTTACACTGCTTCATATATC-AAGGTCGATGCCATGTCCCAGACA
*
102574465 GGTCTTACACTAGCTTCCATATATCAAGGTCGATGCCATGTCCCAGCCA
1 GGTCTTACACT-GCTT-CATATATCAAGGTCGATGCCATGTCCCAGACA
* *
102574514 GGTCTTACACTGGCTTGCATATCTCGAGGTCGATG-CATGTCCCAGACA
1 GGTCTTACACT-GCTT-CATATATCAAGGTCGATGCCATGTCCCAGACA
*
102574562 TGTCTTACACTGGCTCTCATA
1 GGTCTTACACT-GCT-TCATA
102574583 ATGTGGCCAA
Statistics
Matches: 102, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
47 11 0.11
48 35 0.34
49 56 0.55
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
GGTCTTACACTGCTTCATATATCAAGGTCGATGCCATGTCCCAGACA
Done.