Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 329 of 433
Found at i:102918628 original size:16 final size:18
Alignment explanation
Indices: 102918602--102918635 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
102918592 TTTAATTAGA
102918602 TAAACTAATTTTC-CAAT
1 TAAACTAATTTTCTCAAT
102918619 TAAA-TAATTTTCTCAAT
1 TAAACTAATTTTCTCAAT
102918636 CCAATTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (18 bp):
TAAACTAATTTTCTCAAT
Found at i:102935451 original size:16 final size:16
Alignment explanation
Indices: 102935426--102935469 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
102935416 GTTCATAACA
102935426 AATTATTAATATAA-AAT
1 AATTA-TAAT-TAATAAT
*
102935443 AATTATAATTAATTAT
1 AATTATAATTAATAAT
102935459 AATTATAATTA
1 AATTATAATTA
102935470 TTTTATTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 3 0.12
16 17 0.68
17 5 0.20
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AATTATAATTAATAAT
Found at i:102937943 original size:19 final size:19
Alignment explanation
Indices: 102937921--102937958 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
102937911 AATAGAATAG
102937921 AATAAATAA-ATAAAATAAA
1 AATAAATAACA-AAAATAAA
*
102937940 AATAAGTAACAAAAATAAA
1 AATAAATAACAAAAATAAA
102937959 CCAATATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (19 bp):
AATAAATAACAAAAATAAA
Found at i:102939001 original size:21 final size:21
Alignment explanation
Indices: 102938929--102939024 Score: 75
Period size: 21 Copynumber: 4.4 Consensus size: 21
102938919 AAAGAGTTGT
** *
102938929 TATGTGAACTTATAGGAAATAA
1 TATGTGAACACATA-GAAATTA
* * *
102938951 CATGTGAACACAATAGGAATTG
1 TATGTGAACAC-ATAGAAATTA
* *
102938973 TAATGTGAACACGTAGAAGTTA
1 T-ATGTGAACACATAGAAATTA
*
102938995 TATGTGAACCCATAGAAATTA
1 TATGTGAACACATAGAAATTA
*
102939016 TATGCGAAC
1 TATGTGAAC
102939025 CTTAACTACT
Statistics
Matches: 57, Mismatches: 15, Indels: 5
0.74 0.19 0.06
Matches are distributed among these distances:
21 25 0.44
22 19 0.33
23 13 0.23
ACGTcount: A:0.42, C:0.11, G:0.20, T:0.27
Consensus pattern (21 bp):
TATGTGAACACATAGAAATTA
Found at i:102940781 original size:20 final size:21
Alignment explanation
Indices: 102940756--102940795 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
102940746 TCCCTGAAAC
*
102940756 AGGGC-ACACTCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
102940776 AGGGCAACACGCCTGTGTGG
1 AGGGCAACACGCCCGTGTGG
102940796 TCATTATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.20, C:0.28, G:0.38, T:0.15
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:102957897 original size:77 final size:76
Alignment explanation
Indices: 102957792--102958067 Score: 325
Period size: 77 Copynumber: 3.7 Consensus size: 76
102957782 AATAAAAGAT
* * * *
102957792 AATTCAAATAGAAATAGAATTCCATATGTTTTTATCTTCTTATCCTAATTTGAAATCGTATATTA
1 AATTTAAATAGAATTAAAATTCCATATGTTTTTATCTTCTTATCCTAATTTGAAATCATATATTA
102957857 TCCTTCTTTAAA
66 TCCTTCTTT-AA
* * * *
102957869 AATTAAAATAGAATTAAAAGTCCATATGTTTTTA---TC--A---TAATTTGAAATTATATCTTA
1 AATTTAAATAGAATTAAAATTCCATATGTTTTTATCTTCTTATCCTAATTTGAAATCATATATTA
*
102957926 TCCTTCTTTAT
66 TCCTTCTTTAA
* * * * *
102957937 AATTTAAATAGAATTAAATTTCCGTATCTTATTATCTTCTTATCCTAATTTGAAATCATATTTTA
1 AATTTAAATAGAATTAAAATTCCATATGTTTTTATCTTCTTATCCTAATTTGAAATCATATATTA
* *
102958002 TTCTTGTTTAA
66 TCCTTCTTTAA
*
102958013 AATTTAAATAGAATTAAAATTCCATATATTTTTTATCTTCTTATCCTAATTTGAA
1 AATTTAAATAGAATTAAAATTCCATAT-GTTTTTATCTTCTTATCCTAATTTGAA
102958068 TTTCAAATTA
Statistics
Matches: 167, Mismatches: 23, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
68 29 0.17
69 26 0.16
71 2 0.01
72 1 0.01
73 1 0.01
74 2 0.01
76 51 0.31
77 55 0.33
ACGTcount: A:0.36, C:0.12, G:0.05, T:0.47
Consensus pattern (76 bp):
AATTTAAATAGAATTAAAATTCCATATGTTTTTATCTTCTTATCCTAATTTGAAATCATATATTA
TCCTTCTTTAA
Found at i:102957916 original size:69 final size:68
Alignment explanation
Indices: 102957831--102958045 Score: 241
Period size: 76 Copynumber: 3.0 Consensus size: 68
102957821 TTTTATCTTC
* * *
102957831 TTATCCTAATTTGAAATCGTATATTATCCTTCTTTAAAAATTAAAATAGAATTAAAAGTCCATAT
1 TTATCCTAATTTGAAATCATATATTATCCTTCTTT-AAAATTTAAATAGAATTAAAATTCCATAT
*
102957896 GTTT
65 ATTT
* * * * *
102957900 TTATCATAATTTGAAATTATATCTTATCCTTCTTTATAATTTAAATAGAATTAAATTTCCGTATC
1 TTATCCTAATTTGAAATCATATATTATCCTTCTTTAAAATTTAAATAGAATTAAAATTCC--A--
102957965 TTATTATCTT
62 -TA-TAT-TT
* * *
102957975 CTTATCCTAATTTGAAATCATATTTTATTCTTGTTTAAAATTTAAATAGAATTAAAATTCCATAT
1 -TTATCCTAATTTGAAATCATATATTATCCTTCTTTAAAATTTAAATAGAATTAAAATTCCATAT
102958040 ATTT
65 ATTT
102958044 TT
1 TT
102958046 TATCTTCTTA
Statistics
Matches: 122, Mismatches: 16, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
68 23 0.19
69 33 0.27
70 4 0.03
71 2 0.02
73 2 0.02
74 3 0.02
75 2 0.02
76 53 0.43
ACGTcount: A:0.36, C:0.11, G:0.05, T:0.47
Consensus pattern (68 bp):
TTATCCTAATTTGAAATCATATATTATCCTTCTTTAAAATTTAAATAGAATTAAAATTCCATATA
TTT
Found at i:102957990 original size:76 final size:77
Alignment explanation
Indices: 102957900--102958067 Score: 239
Period size: 76 Copynumber: 2.2 Consensus size: 77
102957890 CCATATGTTT
* * * * *
102957900 TTATCATAATTTGAAATTATATCTTATCCTTCTTTATAATTTAAATAGAATTAAATTTCCGTAT-
1 TTATCCTAATTTGAAATCATATCTTATCCTTCTTTAAAATTTAAATAGAATTAAAATTCCATATA
102957964 CTTATTATCTTC
66 CTTATTATCTTC
* * *
102957976 TTATCCTAATTTGAAATCATATTTTATTCTTGTTTAAAATTTAAATAGAATTAAAATTCCATATA
1 TTATCCTAATTTGAAATCATATCTTATCCTTCTTTAAAATTTAAATAGAATTAAAATTCCATATA
* *
102958041 TTTTTTATCTTC
66 CTTATTATCTTC
102958053 TTATCCTAATTTGAA
1 TTATCCTAATTTGAA
102958068 TTTCAAATTA
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
76 56 0.69
77 25 0.31
ACGTcount: A:0.34, C:0.12, G:0.04, T:0.50
Consensus pattern (77 bp):
TTATCCTAATTTGAAATCATATCTTATCCTTCTTTAAAATTTAAATAGAATTAAAATTCCATATA
CTTATTATCTTC
Found at i:102965096 original size:20 final size:20
Alignment explanation
Indices: 102965073--102965143 Score: 70
Period size: 20 Copynumber: 3.4 Consensus size: 20
102965063 AATAACATCT
102965073 ATTCTCAGTCAATATCAATC
1 ATTCTCAGTCAATATCAATC
* * **
102965093 ATTCTCATTCACTAAGTACTTTC
1 ATTCTCAGTCAAT-A-T-CAATC
102965116 TATTCTCAGTCAATATCAATC
1 -ATTCTCAGTCAATATCAATC
102965137 ATTCTCA
1 ATTCTCA
102965144 TCACTATGTA
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
20 18 0.46
21 4 0.10
22 2 0.05
23 4 0.10
24 11 0.28
ACGTcount: A:0.31, C:0.25, G:0.04, T:0.39
Consensus pattern (20 bp):
ATTCTCAGTCAATATCAATC
Found at i:102965133 original size:44 final size:43
Alignment explanation
Indices: 102965070--102965156 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 43
102965060 CCCAATAACA
102965070 TCTATTCTCAGTCAATATCAATCATTCTCATTCACTAAGTACTT
1 TCTATTCTCAGTCAATATCAATCATTCTCA-TCACTAAGTACTT
*
102965114 TCTATTCTCAGTCAATATCAATCATTCTCATCACTATGTACTT
1 TCTATTCTCAGTCAATATCAATCATTCTCATCACTAAGTACTT
102965157 AAAAAAAGCA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
43 12 0.29
44 30 0.71
ACGTcount: A:0.29, C:0.25, G:0.05, T:0.41
Consensus pattern (43 bp):
TCTATTCTCAGTCAATATCAATCATTCTCATCACTAAGTACTT
Found at i:102966570 original size:23 final size:22
Alignment explanation
Indices: 102966493--102966581 Score: 63
Period size: 23 Copynumber: 3.9 Consensus size: 22
102966483 AAGCTCCTCC
* *
102966493 TGAGCTGATAATAGTATGCTCTAA
1 TGAGCTGA-AACAGTAAGCTCT-A
* *
102966517 TGAGCTGAAACGGT-AGCTTTA
1 TGAGCTGAAACAGTAAGCTCTA
* * *
102966538 TTTAGTTGAAATAGTAAGCTCTA
1 -TGAGCTGAAACAGTAAGCTCTA
*
102966561 TCGAGCTGAAACGGTAAGCTC
1 T-GAGCTGAAACAGTAAGCTC
102966582 CAATTAGCTA
Statistics
Matches: 49, Mismatches: 13, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
21 1 0.02
22 15 0.31
23 25 0.51
24 8 0.16
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (22 bp):
TGAGCTGAAACAGTAAGCTCTA
Found at i:102971554 original size:2 final size:2
Alignment explanation
Indices: 102971547--102971575 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
102971537 GTTCGATCAG
102971547 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
102971576 GTACGCACAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:102971698 original size:29 final size:29
Alignment explanation
Indices: 102971666--102971738 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
102971656 CTTCGAGCTC
102971666 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
102971695 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
102971724 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
102971739 ATCTCGTCAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:102980383 original size:23 final size:23
Alignment explanation
Indices: 102980353--102980479 Score: 121
Period size: 23 Copynumber: 5.3 Consensus size: 23
102980343 GCTGATAATA
*
102980353 GTAAGCTCTAATAAGCTGAAACG
1 GTAAGCTCTAATGAGCTGAAACG
* *
102980376 ATAAGCTCTATTGAGCTGAAACG
1 GTAAGCTCTAATGAGCTGAAACG
*
102980399 GTAAGCTCT-ATCGACCTGAAACG
1 GTAAGCTCTAAT-GAGCTGAAACG
* **
102980422 GTAAGCTCCAATGAGCTGAAAATA
1 GTAAGCTCTAATGAGCTG-AAACG
* *
102980446 GTAAGCTCTTACGAGCTGATATATCG
1 GTAAGCTCTAATGAGCTGA-A-A-CG
102980472 GTAAGCTC
1 GTAAGCTC
102980480 ATACGAGCTA
Statistics
Matches: 83, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
22 1 0.01
23 52 0.63
24 21 0.25
25 1 0.01
26 8 0.10
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (23 bp):
GTAAGCTCTAATGAGCTGAAACG
Found at i:102980408 original size:46 final size:46
Alignment explanation
Indices: 102980326--102980454 Score: 125
Period size: 46 Copynumber: 2.7 Consensus size: 46
102980316 GAGCCATGAT
** * *
102980326 CGATAAGCTCCTCCTGAGCTGATAATAGTAAGCTCTAAT-AAGCTGAAA
1 CGATAAGCT-CTAATGAGCTGA-AACAGTAAGCTCT-ATCAACCTGAAA
* * *
102980374 CGATAAGCTCTATTGAGCTGAAACGGTAAGCTCTATCGACCTGAAA
1 CGATAAGCTCTAATGAGCTGAAACAGTAAGCTCTATCAACCTGAAA
* * *
102980420 CGGTAAGCTCCAATGAGCTGAAAATAGTAAGCTCT
1 CGATAAGCTCTAATGAGCTG-AAACAGTAAGCTCT
102980455 TACGAGCTGA
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 2 0.03
46 35 0.51
47 22 0.32
48 9 0.13
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (46 bp):
CGATAAGCTCTAATGAGCTGAAACAGTAAGCTCTATCAACCTGAAA
Found at i:102980461 original size:24 final size:26
Alignment explanation
Indices: 102980434--102980488 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
102980424 AAGCTCCAAT
*
102980434 GAGCTGA-AAAT-AGTAAGCTCTTAC
1 GAGCTGATAAATCAGTAAGCTCATAC
* *
102980458 GAGCTGATATATCGGTAAGCTCATAC
1 GAGCTGATAAATCAGTAAGCTCATAC
102980484 GAGCT
1 GAGCT
102980489 ATGGTGAGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 7 0.27
25 3 0.12
26 16 0.62
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (26 bp):
GAGCTGATAAATCAGTAAGCTCATAC
Found at i:102981786 original size:24 final size:24
Alignment explanation
Indices: 102981735--102981923 Score: 278
Period size: 24 Copynumber: 8.0 Consensus size: 24
102981725 GCTTTATCAT
*
102981735 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
102981760 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
102981784 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
102981807 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
102981831 ATAACTGTGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
102981854 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
102981878 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
102981901 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
102981924 GCACTTCCTC
Statistics
Matches: 150, Mismatches: 10, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
23 65 0.43
24 73 0.49
25 12 0.08
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:102981810 original size:23 final size:23
Alignment explanation
Indices: 102981756--102981922 Score: 262
Period size: 23 Copynumber: 7.1 Consensus size: 23
102981746 CCTAGCCTCT
*
102981756 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
102981779 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
102981803 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
102981826 TTTTGATAACTGTGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
102981850 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
102981873 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
102981897 TTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
102981920 TTT
1 TTT
102981923 TGCACTTCCT
Statistics
Matches: 133, Mismatches: 8, Indels: 5
0.91 0.05 0.03
Matches are distributed among these distances:
23 68 0.51
24 65 0.49
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:102981810 original size:47 final size:47
Alignment explanation
Indices: 102981756--102981924 Score: 302
Period size: 47 Copynumber: 3.6 Consensus size: 47
102981746 CCTAGCCTCT
* *
102981756 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
102981803 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGTGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
102981850 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
102981897 TTTAATAACTAGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
102981925 CACTTCCTCC
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 117 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:102981995 original size:9 final size:9
Alignment explanation
Indices: 102981981--102982037 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
102981971 ATCTCATGTG
102981981 CATATCATA
1 CATATCATA
*
102981990 CATATCATGTG
1 CATATCA--TA
102982001 CATATCATA
1 CATATCATA
* *
102982010 CATGTCATGTG
1 CATATCA--TA
102982021 CATATCATA
1 CATATCATA
102982030 CATATCAT
1 CATATCAT
102982038 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:102981997 original size:20 final size:20
Alignment explanation
Indices: 102981969--102982039 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
102981959 GCATTTATGA
*
102981969 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
102981989 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
102982009 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
102982029 ACATATCATGT
1 ACATATCATGT
102982040 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:102982004 original size:11 final size:11
Alignment explanation
Indices: 102981974--102982028 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
102981964 TATGAACATC
102981974 TCATGTGCATA
1 TCATGTGCATA
*
102981985 TCA--TACATA
1 TCATGTGCATA
102981994 TCATGTGCATA
1 TCATGTGCATA
* *
102982005 TCA--TACATG
1 TCATGTGCATA
102982014 TCATGTGCATA
1 TCATGTGCATA
102982025 TCAT
1 TCAT
102982029 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:102982104 original size:25 final size:25
Alignment explanation
Indices: 102982076--102982123 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102982066 ATATATAAAC
* * *
102982076 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
102982101 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
102982124 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:102985948 original size:29 final size:28
Alignment explanation
Indices: 102985916--102986018 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
102985906 GGGACGAGAT
* *
102985916 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
102985945 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
102985974 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
102986003 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
102986019 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:102993986 original size:29 final size:28
Alignment explanation
Indices: 102993954--102994056 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
102993944 GGGACGAGAT
* *
102993954 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
102993983 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
102994012 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
102994041 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
102994057 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:103001219 original size:24 final size:24
Alignment explanation
Indices: 103001168--103001356 Score: 296
Period size: 24 Copynumber: 8.0 Consensus size: 24
103001158 GCTTTATCAT
*
103001168 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
103001193 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
103001217 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
103001240 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
103001264 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
103001287 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
103001311 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
103001334 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
103001357 GCACTTCCTC
Statistics
Matches: 153, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
23 67 0.44
24 74 0.48
25 12 0.08
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:103001243 original size:23 final size:23
Alignment explanation
Indices: 103001189--103001355 Score: 280
Period size: 23 Copynumber: 7.1 Consensus size: 23
103001179 CCTAGCCTCT
*
103001189 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
103001212 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
103001236 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
103001259 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
103001283 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
103001306 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
103001330 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
103001353 TTT
1 TTT
103001356 TGCACTTCCT
Statistics
Matches: 136, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 70 0.51
24 66 0.49
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:103001243 original size:47 final size:47
Alignment explanation
Indices: 103001189--103001357 Score: 320
Period size: 47 Copynumber: 3.6 Consensus size: 47
103001179 CCTAGCCTCT
* *
103001189 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
103001236 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
103001283 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
103001330 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
103001358 CACTTCCTCC
Statistics
Matches: 120, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 120 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:103001428 original size:9 final size:9
Alignment explanation
Indices: 103001414--103001470 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
103001404 ATCTCATGTG
103001414 CATATCATA
1 CATATCATA
*
103001423 CATATCATGTG
1 CATATCA--TA
103001434 CATATCATA
1 CATATCATA
* *
103001443 CATGTCATGTG
1 CATATCA--TA
103001454 CATATCATA
1 CATATCATA
103001463 CATATCAT
1 CATATCAT
103001471 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:103001430 original size:20 final size:20
Alignment explanation
Indices: 103001402--103001472 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
103001392 GCATTTATGA
*
103001402 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
103001422 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
103001442 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
103001462 ACATATCATGT
1 ACATATCATGT
103001473 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:103001437 original size:11 final size:11
Alignment explanation
Indices: 103001407--103001461 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
103001397 TATGAACATC
103001407 TCATGTGCATA
1 TCATGTGCATA
*
103001418 TCA--TACATA
1 TCATGTGCATA
103001427 TCATGTGCATA
1 TCATGTGCATA
* *
103001438 TCA--TACATG
1 TCATGTGCATA
103001447 TCATGTGCATA
1 TCATGTGCATA
103001458 TCAT
1 TCAT
103001462 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:103021530 original size:13 final size:13
Alignment explanation
Indices: 103021512--103021539 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
103021502 GCTCGATAGG
103021512 GACACGCCCGTGT
1 GACACGCCCGTGT
103021525 GACACGCCCGTGT
1 GACACGCCCGTGT
103021538 GA
1 GA
103021540 GTCGTGTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.36, G:0.32, T:0.14
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:103022927 original size:22 final size:22
Alignment explanation
Indices: 103022902--103022946 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
103022892 ATATAAGTTG
*
103022902 ATTAACCATTGAA-TTAAGCTTA
1 ATTAA-CATTGAATTTAACCTTA
*
103022924 ATTAACATTTAATTTAACCTTA
1 ATTAACATTGAATTTAACCTTA
103022946 A
1 A
103022947 AATATGATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.42, C:0.13, G:0.04, T:0.40
Consensus pattern (22 bp):
ATTAACATTGAATTTAACCTTA
Found at i:103024717 original size:46 final size:45
Alignment explanation
Indices: 103024664--103024836 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 45
103024654 TTGGGCATCC
103024664 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCT
*** * * *
103024710 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCT
* * *
103024757 GAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCT
* *
103024803 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
103024837 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 63 0.61
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.29
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCT
Found at i:103024816 original size:93 final size:93
Alignment explanation
Indices: 103024657--103024829 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
103024647 AGAATATTTG
* * *
103024657 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAG
103024722 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
103024750 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAG
103024815 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
103024830 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:103033086 original size:21 final size:20
Alignment explanation
Indices: 103033061--103033103 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
103033051 AGCAAAAATG
103033061 AAGAAATAAAAATAAAATAAA
1 AAGAAATAAAAA-AAAATAAA
*
103033082 AAGAAATGAAAAAAAATGAAA
1 AAGAAATAAAAAAAAAT-AAA
103033103 A
1 A
103033104 CCTTAACTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.79, C:0.00, G:0.09, T:0.12
Consensus pattern (20 bp):
AAGAAATAAAAAAAAATAAA
Found at i:103034094 original size:13 final size:13
Alignment explanation
Indices: 103034078--103034102 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103034068 GTTATTAATT
103034078 CAATCTATTATGG
1 CAATCTATTATGG
103034091 CAATCTATTATG
1 CAATCTATTATG
103034103 TATTGAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (13 bp):
CAATCTATTATGG
Found at i:103037137 original size:20 final size:20
Alignment explanation
Indices: 103037089--103037138 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
103037079 ATATTACATA
103037089 TGTCTGATTTATTTATTCATT
1 TGTCTG-TTTATTTATTCATT
* * *
103037110 TCTATGTTTATTTATTCCTT
1 TGTCTGTTTATTTATTCATT
103037130 TGTCTGTTT
1 TGTCTGTTT
103037139 GCTATCATGT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.14, C:0.12, G:0.10, T:0.64
Consensus pattern (20 bp):
TGTCTGTTTATTTATTCATT
Found at i:103044928 original size:7 final size:7
Alignment explanation
Indices: 103044912--103045018 Score: 50
Period size: 7 Copynumber: 15.7 Consensus size: 7
103044902 AATAAATGAA
*
103044912 ATAATTT
1 ATAATAT
103044919 ATAATAT
1 ATAATAT
103044926 ATAATAT
1 ATAATAT
*
103044933 A-AAAAT
1 ATAATAT
* *
103044939 GTAAGTTT
1 ATAA-TAT
*
103044947 TTAA-A-
1 ATAATAT
*
103044952 ATAATGT
1 ATAATAT
103044959 ATAATAT
1 ATAATAT
*
103044966 A-AATAA
1 ATAATAT
103044972 ATAAATAT
1 AT-AATAT
103044980 ATAAGATAT
1 AT-A-ATAT
103044989 ATAAGT-T
1 ATAA-TAT
103044996 A-AA-AT
1 ATAATAT
103045001 ATAATAT
1 ATAATAT
103045008 ATAATA-
1 ATAATAT
103045014 ATAAT
1 ATAAT
103045019 TTACAAATTT
Statistics
Matches: 77, Mismatches: 12, Indels: 23
0.69 0.11 0.21
Matches are distributed among these distances:
5 5 0.06
6 18 0.23
7 34 0.44
8 14 0.18
9 6 0.08
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (7 bp):
ATAATAT
Found at i:103044982 original size:21 final size:21
Alignment explanation
Indices: 103044950--103045014 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
103044940 TAAGTTTTTA
*
103044950 AAAT-AATGTATAATATAAAT
1 AAATAAATATATAATATAAAT
* *
103044970 AAATAAATATATAAGATATAT
1 AAATAAATATATAATATAAAT
*
103044991 AAGTTAAA-ATATAATATATAAT
1 AA-ATAAATATATAATATA-AAT
103045013 AA
1 AA
103045015 TAATTTACAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 4 0.11
21 24 0.67
22 8 0.22
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.34
Consensus pattern (21 bp):
AAATAAATATATAATATAAAT
Found at i:103044983 original size:28 final size:29
Alignment explanation
Indices: 103044952--103045012 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 29
103044942 AGTTTTTAAA
103044952 ATAATGTATAATATAA-AT-AAATA-AATAT
1 ATAATG-AT-ATATAAGATAAAATATAATAT
*
103044980 ATAA-GATATATAAGTTAAAATATAATAT
1 ATAATGATATATAAGATAAAATATAATAT
103045008 ATAAT
1 ATAAT
103045013 AATAATTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
25 6 0.21
26 3 0.11
27 6 0.21
28 13 0.46
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (29 bp):
ATAATGATATATAAGATAAAATATAATAT
Found at i:103045056 original size:12 final size:12
Alignment explanation
Indices: 103045034--103045067 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
103045024 AATTTTGAAA
103045034 ATATA-AATAAT
1 ATATATAATAAT
103045045 ATATATAATAAT
1 ATATATAATAAT
103045057 ATATATAATAA
1 ATATATAATAA
103045068 ATTAAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 5 0.23
12 17 0.77
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
ATATATAATAAT
Found at i:103045415 original size:35 final size:36
Alignment explanation
Indices: 103045371--103045451 Score: 146
Period size: 35 Copynumber: 2.3 Consensus size: 36
103045361 AATCATATCT
*
103045371 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
103045406 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
103045442 TCTAAGATTG
1 TCTAAGATTG
103045452 CATATCATTG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
35 29 0.66
36 15 0.34
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (36 bp):
TCTAAGATTGTATCATATCTAAGATTGCATATCACA
Found at i:103045444 original size:19 final size:19
Alignment explanation
Indices: 103045371--103045459 Score: 134
Period size: 17 Copynumber: 4.9 Consensus size: 19
103045361 AATCATATCT
103045371 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
103045388 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
103045406 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
103045423 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
103045442 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
103045460 TGAAGATTAT
Statistics
Matches: 65, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
17 26 0.40
18 16 0.25
19 23 0.35
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:103045466 original size:36 final size:35
Alignment explanation
Indices: 103045371--103045467 Score: 126
Period size: 35 Copynumber: 2.7 Consensus size: 35
103045361 AATCATATCT
* *
103045371 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCGAAGATTGCAATCACA
*
103045406 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCGAAGATTGCA-ATCACA
103045442 TCTAAGATTGCATATCAT-T-GAAGATT
1 TCTAAGATTG--TATCATATCGAAGATT
103045468 ATATTTCCAT
Statistics
Matches: 57, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
35 29 0.51
36 21 0.37
37 1 0.02
38 6 0.11
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCGAAGATTGCAATCACA
Found at i:103045467 original size:17 final size:18
Alignment explanation
Indices: 103045387--103045456 Score: 74
Period size: 19 Copynumber: 3.9 Consensus size: 18
103045377 ATTGTATCAT
*
103045387 ATCTAAGATTGCA-ATCAT
1 ATCTAAGATTGCATAT-AC
*
103045405 ATCTAAGATTG--TATCAT
1 ATCTAAGATTGCATAT-AC
103045422 ATCTAAGATTGCATATCAC
1 ATCTAAGATTGCATAT-AC
103045441 ATCTAAGATTGCATAT
1 ATCTAAGATTGCATAT
103045457 CATTGAAGAT
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
17 16 0.33
18 11 0.23
19 21 0.44
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (18 bp):
ATCTAAGATTGCATATAC
Found at i:103046062 original size:83 final size:83
Alignment explanation
Indices: 103045930--103046330 Score: 701
Period size: 83 Copynumber: 4.9 Consensus size: 83
103045920 TTGTCTTTGA
* *
103045930 TGAGAACATTTGAGAGTCA-GTCTG-AA-GCCGTCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TGAGAACATTTGAGAGTCATATCTGCAATGTC--CTCGATTTGTTCCTTGTAAGCACAAGGATGC
103045992 CAAACCATCTTGAGTCTGTT
64 CAAACCATCTTGAGTCTGTT
103046012 TGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCA
1 TGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCA
103046077 AACCATCTTGAGTCTGTT
66 AACCATCTTGAGTCTGTT
103046095 TGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCA
1 TGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCA
103046160 AACCATCTTGAGTCTGTT
66 AACCATCTTGAGTCTGTT
103046178 TGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCA
1 TGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCA
103046243 AACCATCTTGAGTC-GTT
66 AACCATCTTGAGTCTGTT
*
103046260 TGAGAACATTTGAGAGTCATATCTGCTATGTCCTCGATTTGTT-CTTGTAA-CACAA-GATGCCA
1 TGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCA
103046322 AA-CATCTTG
66 AACCATCTTG
103046331 GATCTGCTTC
Statistics
Matches: 313, Mismatches: 3, Indels: 10
0.96 0.01 0.03
Matches are distributed among these distances:
78 7 0.02
79 9 0.03
80 5 0.02
81 7 0.02
82 64 0.20
83 217 0.69
84 2 0.01
85 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (83 bp):
TGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCA
AACCATCTTGAGTCTGTT
Found at i:103046489 original size:118 final size:119
Alignment explanation
Indices: 103046258--103046832 Score: 966
Period size: 119 Copynumber: 5.0 Consensus size: 119
103046248 TCTTGAGTCG
* * *
103046258 TTTGAGAACATTTGAGAGTCATATCTGCTATGTCCTCGATTTGTT-CTTGT-AACACAAG-ATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
103046320 CAAA-CATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
*
103046373 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTT-CTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
103046437 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
103046491 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
103046556 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
103046610 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* *
103046675 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
103046729 TTTGAG-A--TCT--GA-TCAAATCT-CTATGTCCTCGATTTGTTCCTTGTAAACAC-AGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
103046786 CAAATCATC-TGGATCTGC-TCATTATAAACATCTGAA-GTTAGATCTGT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGT
103046833 ATCTTCGATC
Statistics
Matches: 447, Mismatches: 9, Indels: 15
0.95 0.02 0.03
Matches are distributed among these distances:
108 10 0.02
109 17 0.04
110 9 0.02
111 16 0.04
112 30 0.07
113 8 0.02
114 2 0.00
115 47 0.11
116 11 0.02
117 7 0.02
118 95 0.21
119 195 0.44
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
Found at i:103046873 original size:238 final size:235
Alignment explanation
Indices: 103046258--103046831 Score: 877
Period size: 237 Copynumber: 2.5 Consensus size: 235
103046248 TCTTGAGTCG
* *
103046258 TTTGAGAACATTTGAGAGTCATATCTGCTATGTCCTCGATTTGTT-CTTGT-AACACAAG-ATGC
1 TTTGAGAAC-TCT-AGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* * *
103046320 CAAA-CATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATATTTGAGAACGT
64 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAAAACGA
* *
103046384 CTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCTTGTAAACACAAGAATACCAAATCATCTTG
129 CAGAGAGCCAAATCTGCTATGTCCTCGATTTGTTCTTGTAAACACAAGAATACCAAATCATCTTG
*
103046449 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
194 GATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
103046491 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAAC-TCT-AGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* *
103046556 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAGAACGT
64 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAAAACGA
* * *
103046621 CTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTT
129 CAGAGAGCCAAATCTGCTATGTCCTCGATTTGTT-CTTGTAAACACAAGAATACCAAATCATCTT
*
103046686 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
193 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
103046729 TTTGAG-A-TCT-GA-TCAAATCT-CTATGTCCTCGATTTGTTCCTTGTAAACAC-AGAATGCCA
1 TTTGAGAACTCTAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCA
*
103046788 AATCATC-TGGATCTGC-TCATTATAAACATCTGAA-GTTAGATCTG
66 AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTG
103046832 TATCTTCGAT
Statistics
Matches: 328, Mismatches: 8, Indels: 16
0.93 0.02 0.05
Matches are distributed among these distances:
227 10 0.03
228 17 0.05
229 9 0.03
230 16 0.05
231 30 0.09
232 8 0.02
233 44 0.13
234 5 0.02
235 11 0.03
236 8 0.02
237 94 0.29
238 76 0.23
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (235 bp):
TTTGAGAACTCTAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCA
AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATATTTGAAAACGACA
GAGAGCCAAATCTGCTATGTCCTCGATTTGTTCTTGTAAACACAAGAATACCAAATCATCTTGGA
TCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:103047874 original size:1 final size:1
Alignment explanation
Indices: 103047868--103047925 Score: 53
Period size: 1 Copynumber: 58.0 Consensus size: 1
103047858 GGCCTCTCCA
* * * * * * *
103047868 TTTTTTTCTTTTTTTCTTTATTTTTTCTCTTTTTCTTTTCTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
103047926 GAAATAGAAG
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.02, C:0.10, G:0.00, T:0.88
Consensus pattern (1 bp):
T
Found at i:103047891 original size:11 final size:10
Alignment explanation
Indices: 103047868--103047925 Score: 66
Period size: 11 Copynumber: 5.7 Consensus size: 10
103047858 GGCCTCTCCA
103047868 TTTTTTTCTT
1 TTTTTTTCTT
103047878 TTTTTCTT-TAT
1 TTTTT-TTCT-T
*
103047889 TTTTTCTCTT
1 TTTTTTTCTT
103047899 TTTCTTTTCTT
1 TTT-TTTTCTT
103047910 TTTTTTT-TT
1 TTTTTTTCTT
103047919 TTTTTTT
1 TTTTTTT
103047926 GAAATAGAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
9 9 0.21
10 15 0.36
11 18 0.43
ACGTcount: A:0.02, C:0.10, G:0.00, T:0.88
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:103047893 original size:19 final size:18
Alignment explanation
Indices: 103047868--103047925 Score: 75
Period size: 19 Copynumber: 3.2 Consensus size: 18
103047858 GGCCTCTCCA
103047868 TTTTTTTCTTTTTTTCTT
1 TTTTTTTCTTTTTTTCTT
*
103047886 TATTTTTTCTCTTTTTCTT
1 T-TTTTTTCTTTTTTTCTT
103047905 TTCTTTTT-TTTTTTT-TT
1 TT-TTTTTCTTTTTTTCTT
103047922 TTTT
1 TTTT
103047926 GAAATAGAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
16 2 0.06
17 4 0.11
18 8 0.22
19 22 0.61
ACGTcount: A:0.02, C:0.10, G:0.00, T:0.88
Consensus pattern (18 bp):
TTTTTTTCTTTTTTTCTT
Found at i:103055308 original size:7 final size:7
Alignment explanation
Indices: 103055292--103055398 Score: 50
Period size: 7 Copynumber: 15.7 Consensus size: 7
103055282 AATAAATGAA
*
103055292 ATAATTT
1 ATAATAT
103055299 ATAATAT
1 ATAATAT
103055306 ATAATAT
1 ATAATAT
*
103055313 A-AAAAT
1 ATAATAT
* *
103055319 GTAAGTTT
1 ATAA-TAT
*
103055327 TTAA-A-
1 ATAATAT
*
103055332 ATAATGT
1 ATAATAT
103055339 ATAATAT
1 ATAATAT
*
103055346 A-AATAA
1 ATAATAT
103055352 ATAAATAT
1 AT-AATAT
103055360 ATAAGATAT
1 AT-A-ATAT
103055369 ATAAGT-T
1 ATAA-TAT
103055376 A-AA-AT
1 ATAATAT
103055381 ATAATAT
1 ATAATAT
103055388 ATAATA-
1 ATAATAT
103055394 ATAAT
1 ATAAT
103055399 TTACAAATTT
Statistics
Matches: 77, Mismatches: 12, Indels: 23
0.69 0.11 0.21
Matches are distributed among these distances:
5 5 0.06
6 18 0.23
7 34 0.44
8 14 0.18
9 6 0.08
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (7 bp):
ATAATAT
Found at i:103055362 original size:21 final size:21
Alignment explanation
Indices: 103055330--103055394 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
103055320 TAAGTTTTTA
*
103055330 AAAT-AATGTATAATATAAAT
1 AAATAAATATATAATATAAAT
* *
103055350 AAATAAATATATAAGATATAT
1 AAATAAATATATAATATAAAT
*
103055371 AAGTTAAA-ATATAATATATAAT
1 AA-ATAAATATATAATATA-AAT
103055393 AA
1 AA
103055395 TAATTTACAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 4 0.11
21 24 0.67
22 8 0.22
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.34
Consensus pattern (21 bp):
AAATAAATATATAATATAAAT
Found at i:103055363 original size:28 final size:29
Alignment explanation
Indices: 103055332--103055392 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 29
103055322 AGTTTTTAAA
103055332 ATAATGTATAATATAA-AT-AAATA-AATAT
1 ATAATG-AT-ATATAAGATAAAATATAATAT
*
103055360 ATAA-GATATATAAGTTAAAATATAATAT
1 ATAATGATATATAAGATAAAATATAATAT
103055388 ATAAT
1 ATAAT
103055393 AATAATTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
25 6 0.21
26 3 0.11
27 6 0.21
28 13 0.46
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (29 bp):
ATAATGATATATAAGATAAAATATAATAT
Found at i:103055454 original size:39 final size:39
Alignment explanation
Indices: 103055381--103055455 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 39
103055371 AAGTTAAAAT
* * *
103055381 ATAATATATAATAATAATTTACAAATTTTGAAAATATAA
1 ATAATATATAATAATAATATACAAATATTAAAAATATAA
103055420 ATAATATATAATAATATATATA-ATAA-ATTAAAAATA
1 ATAATATATAATAATA-ATATACA-AATATTAAAAATA
103055456 AGTTTAAAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
39 25 0.81
40 6 0.19
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (39 bp):
ATAATATATAATAATAATATACAAATATTAAAAATATAA
Found at i:103055794 original size:35 final size:36
Alignment explanation
Indices: 103055750--103055830 Score: 137
Period size: 35 Copynumber: 2.3 Consensus size: 36
103055740 AATCATATCT
*
103055750 TCTAAGATTGTATCATATCTAAGATTACA-ATCATA
1 TCTAAGATTGTATCATATCTAAGATTACATATCACA
*
103055785 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTACATATCACA
103055821 TCTAAGATTG
1 TCTAAGATTG
103055831 CATATCATTG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
35 28 0.65
36 15 0.35
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (36 bp):
TCTAAGATTGTATCATATCTAAGATTACATATCACA
Found at i:103055823 original size:19 final size:19
Alignment explanation
Indices: 103055750--103055838 Score: 125
Period size: 17 Copynumber: 4.9 Consensus size: 19
103055740 AATCATATCT
103055750 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
103055767 TCTAAGATTACA-ATCATA
1 TCTAAGATTGCATATCATA
103055785 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
103055802 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
103055821 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
103055839 TGAAGATTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
17 25 0.40
18 15 0.24
19 23 0.37
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:103055845 original size:36 final size:35
Alignment explanation
Indices: 103055750--103055847 Score: 119
Period size: 35 Copynumber: 2.8 Consensus size: 35
103055740 AATCATATCT
* *
103055750 TCTAAGATTGTATCATATCTAAGATTACAATCATA
1 TCTAAGATTGTATCATATCGAAGATTACAATCACA
* *
103055785 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCGAAGATTACA-ATCACA
103055821 TCTAAGATTGCATATCAT-T-GAAGATTA
1 TCTAAGATTG--TATCATATCGAAGATTA
103055848 TATTTCCATA
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
35 28 0.50
36 21 0.38
37 1 0.02
38 6 0.11
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCGAAGATTACAATCACA
Found at i:103055846 original size:17 final size:18
Alignment explanation
Indices: 103055766--103055835 Score: 65
Period size: 19 Copynumber: 3.9 Consensus size: 18
103055756 ATTGTATCAT
* *
103055766 ATCTAAGATTACA-ATCAT
1 ATCTAAGATTGCATAT-AC
*
103055784 ATCTAAGATTG--TATCAT
1 ATCTAAGATTGCATAT-AC
103055801 ATCTAAGATTGCATATCAC
1 ATCTAAGATTGCATAT-AC
103055820 ATCTAAGATTGCATAT
1 ATCTAAGATTGCATAT
103055836 CATTGAAGAT
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.34
18 10 0.21
19 21 0.45
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.36
Consensus pattern (18 bp):
ATCTAAGATTGCATATAC
Found at i:103061879 original size:92 final size:91
Alignment explanation
Indices: 103061694--103061953 Score: 220
Period size: 91 Copynumber: 2.8 Consensus size: 91
103061684 GAAATCACCC
* *
103061694 CAACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATCGAAGCCATTAACCTTATCTCCCTAA
1 CAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCATGAACCTTATCTCCCTAA
* ** * *
103061759 AGTTGTAGTGGAGCAGGTTGAAGTTA
66 AGTTGAAGTGGAGCAAATTAAAGCTA
* * * ** * * *
103061785 CAACAAGTCTTATCTCCCTGAATTTGTAGTGGAGCAGA-CTGAAGGTAGTGAATCTTATTTGCCT
1 CAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC-GAAGCCA-TGAACCTTATCTCCCT
103061849 AAAGTTGAAGTGGAGCAAATTAAAGCTA
64 AAAGTTGAAGTGGAGCAAATTAAAGCTA
* * * * * * ** *
103061877 CAAGTTACAAATCTCAACTCCCTGAAGTTACAGTAGAGCAAATTGAAGTTA-GATCC-TATCTCC
1 C-A---ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCATGAACCTTATCTCC
*
103061940 CTAAAGTTGCAGTG
62 CTAAAGTTGAAGTG
103061954 AAGTAGATTG
Statistics
Matches: 132, Mismatches: 30, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
90 1 0.01
91 39 0.30
92 36 0.27
93 19 0.14
94 3 0.02
96 34 0.26
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (91 bp):
CAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCATGAACCTTATCTCCCTAA
AGTTGAAGTGGAGCAAATTAAAGCTA
Found at i:103065368 original size:29 final size:30
Alignment explanation
Indices: 103065315--103065372 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
103065305 CAGAAGTTTT
103065315 GGCACTAAGTGTGCGATTTAAACTAGCTTG
1 GGCACTAAGTGTGCGATTTAAACTAGCTTG
103065345 GGCACTAAGTGTGCGATTT-AACTAGCTT
1 GGCACTAAGTGTGCGATTTAAACTAGCTT
103065373 CGGCTATTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.32
30 19 0.68
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (30 bp):
GGCACTAAGTGTGCGATTTAAACTAGCTTG
Found at i:103071127 original size:3 final size:3
Alignment explanation
Indices: 103071119--103071144 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
103071109 CAACTGTTAA
103071119 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
103071145 CTATACTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:103071278 original size:25 final size:25
Alignment explanation
Indices: 103071232--103071300 Score: 93
Period size: 25 Copynumber: 2.7 Consensus size: 25
103071222 TCACAAGGAT
* *
103071232 AATAATAAACCTAAGAAGAATAATAAA
1 AATAA-AAA-CTAACAATAATAATAAA
*
103071259 AATAAAAACTAACAATAATAGTAAA
1 AATAAAAACTAACAATAATAATAAA
103071284 AATAAAAACTAACAATA
1 AATAAAAACTAACAATA
103071301 TCTAATAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
25 31 0.79
26 3 0.08
27 5 0.13
ACGTcount: A:0.68, C:0.09, G:0.04, T:0.19
Consensus pattern (25 bp):
AATAAAAACTAACAATAATAATAAA
Found at i:103075117 original size:50 final size:50
Alignment explanation
Indices: 103075053--103075436 Score: 409
Period size: 50 Copynumber: 7.7 Consensus size: 50
103075043 GTTTTAGGTC
* * *
103075053 GTGTAGTACTAAGTGCAGGATACGACGTGTACCAGATTGTTAGGTCGCAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACAT
* * * *** **
103075103 GTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAGCTTTCATCATGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG-TTAGGTCACAT
* * * *
103075154 GTGTAGTACTAAGTGCAGGCTACTACGTATATCAGATGGTTAGGTCACGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACAT
* * **
103075204 GTGAAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGTTAGGTCGTAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACAT
* * * * * * * *
103075254 GTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGATAGCTTCGATCACGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGTCACAT
* * *
103075305 ATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCAC--
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACAT
*
103075353 CTGT-GTACT-AGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACAT
* *
103075401 GTGTAGTACTAAGTGCAGGCTACTATGTGTAACAGA
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
103075437 GAGCTTCAGT
Statistics
Matches: 271, Mismatches: 55, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
46 35 0.13
47 5 0.02
48 6 0.02
49 5 0.02
50 144 0.53
51 76 0.28
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACAT
Found at i:103075196 original size:101 final size:99
Alignment explanation
Indices: 103075053--103075431 Score: 401
Period size: 101 Copynumber: 3.8 Consensus size: 99
103075043 GTTTTAGGTC
* * * *
103075053 GTGTAGTACTAAGTGCAGGATACGACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTACTAAGTG
* * ***
103075118 CAGGCTACTATGCGTACTC-GATAGCTTTCATCATGT
66 CAGGCTACTACGTGTACTCAGAT-G-TTAGGTCAT-T
* * * *
103075154 GTGTAGTACTAAGTGCAGGCTACTACGTATATCAGATGGTTAGGTCACGTGTGAAGTACTAAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTACTAAGTG
* *
103075219 CAGGCTACTACGTGTAC-CAAATTGTTAGGTCGTAT
66 CAGGCTACTACGTGTACTCAGA-TGTTAGGTCAT-T
* * * * * * * * *
103075254 GTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGATAGCTTCGATCACGTATGTAGTACTAAGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTAGGTCACATGTGTAGTACTAAGT
*
103075319 GCAGGCTACTACGTGTA-TCAGATGGTTAGGTCA-C
65 GCAGGCTACTACGTGTACTCAGAT-GTTAGGTCATT
* *
103075353 CTGT-GTACT-AGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACTAAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTACTAAGTG
*
103075416 CAGGCTACTATGTGTA
66 CAGGCTACTACGTGTA
103075432 ACAGAGAGCT
Statistics
Matches: 231, Mismatches: 42, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
96 37 0.16
97 22 0.10
98 5 0.02
99 3 0.01
100 39 0.17
101 124 0.54
102 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (99 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTACTAAGTG
CAGGCTACTACGTGTACTCAGATGTTAGGTCATT
Found at i:103075276 original size:151 final size:149
Alignment explanation
Indices: 103075054--103075427 Score: 601
Period size: 151 Copynumber: 2.5 Consensus size: 149
103075044 TTTTAGGTCG
* *
103075054 TGTAGTACTAAGTGCAGGATACGACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGC
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGC
* * *
103075119 AGGCTACTATGCGTACTCGATAGCTTTC-ATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTA
66 AGGCTACTATGCGTACCCGATAGC-TTCGATCACGTATGTAGTACTAAGTGCAGGCTACTACGTA
*
103075183 TATCAGATGGTTAGGTCACG
130 TATCAGATGGTTAGGTCACC
* *
103075203 TGTGAAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGTTAGGTCGTATGTGTAGTACTAAGT
1 TGT--AGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGT
*
103075268 GCAAGCTACTATGCGTACCCGATAGCTTCGATCACGTATGTAGTACTAAGTGCAGGCTACTACGT
64 GCAGGCTACTATGCGTACCCGATAGCTTCGATCACGTATGTAGTACTAAGTGCAGGCTACTACGT
*
103075333 GTATCAGATGGTTAGGTCACC
129 ATATCAGATGGTTAGGTCACC
*
103075354 TGT-GTACT-AGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACTAAGTGC
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGC
103075417 AGGCTACTATG
66 AGGCTACTATG
103075428 TGTAACAGAG
Statistics
Matches: 208, Mismatches: 14, Indels: 8
0.90 0.06 0.03
Matches are distributed among these distances:
147 62 0.30
148 5 0.02
149 3 0.01
150 3 0.01
151 135 0.65
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (149 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGC
AGGCTACTATGCGTACCCGATAGCTTCGATCACGTATGTAGTACTAAGTGCAGGCTACTACGTAT
ATCAGATGGTTAGGTCACC
Found at i:103088198 original size:22 final size:21
Alignment explanation
Indices: 103088164--103088224 Score: 50
Period size: 22 Copynumber: 2.8 Consensus size: 21
103088154 TTATCTTAGA
* * *
103088164 AAAATATTAAAAATTTCAATTT
1 AAAATTTTTAAAATTTCAA-AT
*
103088186 AAAATTTTTAAAACTTTTAAAT
1 AAAATTTTTAAAA-TTTCAAAT
*
103088208 AATATTTTTTAAAATTT
1 AA-AATTTTTAAAATTT
103088225 TTAGTAATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
22 17 0.53
23 15 0.47
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (21 bp):
AAAATTTTTAAAATTTCAAAT
Found at i:103088382 original size:21 final size:19
Alignment explanation
Indices: 103088353--103088437 Score: 62
Period size: 21 Copynumber: 4.0 Consensus size: 19
103088343 CTTTAATAAA
*
103088353 TTTAATAATTTCTTATAATT
1 TTTATTAATTT-TTATAATT
*
103088373 TATTATTAATTATTAATAATT
1 T-TTATTAATT-TTTATAATT
*
103088394 TTTAAATAATTTTTTATAAGTTT
1 TTT-ATTAA-TTTTTATAA--TT
103088417 TTTATTAATATTTTAGTAATT
1 TTTATTAAT-TTTTA-TAATT
103088438 ATCTAAATAA
Statistics
Matches: 52, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
20 3 0.06
21 29 0.56
22 12 0.23
23 8 0.15
ACGTcount: A:0.36, C:0.01, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTATTAATTTTTATAATT
Found at i:103088417 original size:11 final size:10
Alignment explanation
Indices: 103088357--103088437 Score: 63
Period size: 11 Copynumber: 7.6 Consensus size: 10
103088347 AATAAATTTA
*
103088357 ATAATTTCTT
1 ATAATTTTTT
*
103088367 ATAATTTATT
1 ATAATTTTTT
* *
103088377 ATTAATTATTA
1 A-TAATTTTTT
*
103088388 ATAATTTTTAA
1 ATAATTTTT-T
103088399 ATAATTTTTT
1 ATAATTTTTT
103088409 ATAAGTTTTTT
1 ATAA-TTTTTT
*
103088420 ATTAATATTTT
1 A-TAATTTTTT
103088431 AGTAATT
1 A-TAATT
103088438 ATCTAAATAA
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
10 21 0.36
11 34 0.59
12 3 0.05
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.59
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:103088753 original size:15 final size:15
Alignment explanation
Indices: 103088733--103088764 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
103088723 AACCAAATAT
103088733 AAAAATTAAACATTC
1 AAAAATTAAACATTC
*
103088748 AAAAATTCAACATTC
1 AAAAATTAAACATTC
103088763 AA
1 AA
103088765 TATGGTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.16, G:0.00, T:0.25
Consensus pattern (15 bp):
AAAAATTAAACATTC
Found at i:103094176 original size:2 final size:2
Alignment explanation
Indices: 103094169--103094199 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
103094159 TTCATATACC
103094169 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
103094200 TTAAAAGAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:103095696 original size:28 final size:29
Alignment explanation
Indices: 103095630--103095698 Score: 70
Period size: 28 Copynumber: 2.4 Consensus size: 29
103095620 TTTATTTAAT
* *
103095630 TCTAATATATATTTATAAAAATTTATATTA
1 TCTAATA-ATATTTATAAAAATTTACATAA
* **
103095660 T-TAAGAATATTTATAAATTTTTACA-AA
1 TCTAATAATATTTATAAAAATTTACATAA
103095687 TCTAATAATATT
1 TCTAATAATATT
103095699 CATCTTGTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
27 2 0.06
28 25 0.78
29 4 0.12
30 1 0.03
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.48
Consensus pattern (29 bp):
TCTAATAATATTTATAAAAATTTACATAA
Found at i:103101565 original size:28 final size:29
Alignment explanation
Indices: 103101499--103101565 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 29
103101489 AAGAACAAAC
*
103101499 TATATACAT-AATAGATTTGAAAAGAAAA
1 TATATAAATAAATAGATTTGAAAAGAAAA
* *
103101527 TATAT-ATTAAATAGATTT-AAAAGAAAT
1 TATATAAATAAATAGATTTGAAAAGAAAA
103101554 TATATAAATAAA
1 TATATAAATAAA
103101566 ATAACATAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 14 0.42
28 19 0.58
ACGTcount: A:0.58, C:0.01, G:0.07, T:0.33
Consensus pattern (29 bp):
TATATAAATAAATAGATTTGAAAAGAAAA
Found at i:103101568 original size:29 final size:28
Alignment explanation
Indices: 103101508--103101568 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 28
103101498 CTATATACAT
* *
103101508 AATAGATTTGAAAAGAAAATATATATTA
1 AATAGATTTGAAAAGAAAATATAAATAA
103101536 AATAGATTT-AAAAGAAATTATATAAATAA
1 AATAGATTTGAAAAGAAA--ATATAAATAA
103101565 AATA
1 AATA
103101569 ACATAGAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 8 0.28
28 9 0.31
29 12 0.41
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (28 bp):
AATAGATTTGAAAAGAAAATATAAATAA
Found at i:103103310 original size:44 final size:44
Alignment explanation
Indices: 103103261--103103591 Score: 156
Period size: 44 Copynumber: 7.4 Consensus size: 44
103103251 TACTCTGCTG
* * *
103103261 CAACTTCAGAGAGATAAGACTTG-CATATTGAGCCTGCTCCACTA
1 CAACTTCAGGGAGATAAGACTTGTCA-ATTCAACCTGCTCCACTA
* * * *
103103305 CAACTTCAGGGAGATAAAACTTGTCAGTTCAACCTGTTCCACTG
1 CAACTTCAGGGAGATAAGACTTGTCAATTCAACCTGCTCCACTA
** * * * * * *
103103349 CAACTTCAGGGAGATAAGGTTTG-CTA-T-GATCTGCTCTATTG
1 CAACTTCAGGGAGATAAGACTTGTCAATTCAACCTGCTCCACTA
* * * ** * *
103103390 TAACTTTAGAGAGATAAGATCTGTTTGTCTATAGCTTCAATATGTTCCACTG
1 CAACTTCAGGGAGATAAGA-C---TTGTC-A-A--TTCAACCTGCTCCACTA
* * * *
103103442 CAACTTCAGGGAAATAAGA-TTCG-CTATCTTCAGCCTGCT-CACTG
1 CAACTTCAGGGAGATAAGACTT-GTC-A-ATTCAACCTGCTCCACTA
* * *
103103486 CAACTTCAGGGAGATAAGACTTATCACTTCAACCTGCTCCACTG
1 CAACTTCAGGGAGATAAGACTTGTCAATTCAACCTGCTCCACTA
** ** ** *
103103530 CAACTTCAGGGAGATAAGGTTTGT-AACCTTCAATTTATTCCGCTA
1 CAACTTCAGGGAGATAAGACTTGTCAA--TTCAACCTGCTCCACTA
103103575 CAACTTCAGGGAGATAA
1 CAACTTCAGGGAGATAA
103103592 TATTTGACTT
Statistics
Matches: 219, Mismatches: 50, Indels: 35
0.72 0.16 0.12
Matches are distributed among these distances:
41 24 0.11
42 1 0.00
43 13 0.06
44 104 0.47
45 43 0.20
46 1 0.00
47 6 0.03
48 2 0.01
51 1 0.00
52 24 0.11
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGACTTGTCAATTCAACCTGCTCCACTA
Found at i:103107607 original size:52 final size:52
Alignment explanation
Indices: 103107550--103107662 Score: 217
Period size: 52 Copynumber: 2.2 Consensus size: 52
103107540 GGGAGTCACG
103107550 CGCCCATGTAGATTGGGGCGTGTGGTCACACACATCCGTGTGGCTTGGGACA
1 CGCCCATGTAGATTGGGGCGTGTGGTCACACACATCCGTGTGGCTTGGGACA
*
103107602 CGCCCATGTAGATTGGGGGGTGTGGTCACACACATCCGTGTGGCTTGGGACA
1 CGCCCATGTAGATTGGGGCGTGTGGTCACACACATCCGTGTGGCTTGGGACA
103107654 CGCCCATGT
1 CGCCCATGT
103107663 CCTGTGCCCA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 60 1.00
ACGTcount: A:0.17, C:0.26, G:0.35, T:0.23
Consensus pattern (52 bp):
CGCCCATGTAGATTGGGGCGTGTGGTCACACACATCCGTGTGGCTTGGGACA
Found at i:103109157 original size:39 final size:39
Alignment explanation
Indices: 103109098--103109315 Score: 310
Period size: 39 Copynumber: 5.6 Consensus size: 39
103109088 ATCGTGATTT
* * * * *
103109098 GAAGCCCGAAGTCTAGCTGAAGCACATAAGTTCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
103109137 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGTTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* * *
103109176 AAAGCCCAAAGGCTAACTGAAGCACACAAGTGCTAAACA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* * *
103109215 GAAGCCCAAAGGCTAACTGAAGCACGCAAGTGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
103109254 GAAGCCCGAAGGCTAACTAAAGCACGCAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
103109293 GAAGCCCGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
103109316 TCATTAGAGC
Statistics
Matches: 161, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 161 1.00
ACGTcount: A:0.39, C:0.24, G:0.24, T:0.13
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:103111989 original size:15 final size:15
Alignment explanation
Indices: 103111966--103112027 Score: 88
Period size: 15 Copynumber: 4.1 Consensus size: 15
103111956 ACGAAGAAGC
*
103111966 CCAAAATAAGGAAAT
1 CCAAGATAAGGAAAT
*
103111981 CCAAGATAAAGAAAT
1 CCAAGATAAGGAAAT
*
103111996 CCATGATAAGGAAAT
1 CCAAGATAAGGAAAT
*
103112011 CCATGATAAGGAAAT
1 CCAAGATAAGGAAAT
103112026 CC
1 CC
103112028 CATTTACAGC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (15 bp):
CCAAGATAAGGAAAT
Found at i:103111993 original size:30 final size:30
Alignment explanation
Indices: 103111959--103112029 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
103111949 ATATGAAACG
*
103111959 AAGAAGCCCAAAATAAGGAAATCCAAGATA
1 AAGAAACCCAAAATAAGGAAATCCAAGATA
* ** *
103111989 AAGAAATCCATGATAAGGAAATCCATGATA
1 AAGAAACCCAAAATAAGGAAATCCAAGATA
*
103112019 AGGAAATCCCA
1 AAGAAA-CCCA
103112030 TTTACAGCAC
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
30 30 0.91
31 3 0.09
ACGTcount: A:0.52, C:0.17, G:0.17, T:0.14
Consensus pattern (30 bp):
AAGAAACCCAAAATAAGGAAATCCAAGATA
Found at i:103119783 original size:3 final size:3
Alignment explanation
Indices: 103119775--103119857 Score: 148
Period size: 3 Copynumber: 27.0 Consensus size: 3
103119765 ATGTAAAATA
103119775 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
103119823 AAT AAT AAT AAT AAT AAT AAT AAAT AAT ATAT AAT
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT A-AT AAT
103119858 TTGGCCATAG
Statistics
Matches: 78, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
3 72 0.92
4 6 0.08
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:103119989 original size:28 final size:29
Alignment explanation
Indices: 103119923--103119989 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 29
103119913 AAGAACAAAC
*
103119923 TATATACAT-AATAGATTTGAAAAGAAAA
1 TATATAAATAAATAGATTTGAAAAGAAAA
* *
103119951 TATAT-ATTAAATAGATTT-AAAAGAAAT
1 TATATAAATAAATAGATTTGAAAAGAAAA
103119978 TATATAAATAAA
1 TATATAAATAAA
103119990 ATAACATAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 14 0.42
28 19 0.58
ACGTcount: A:0.58, C:0.01, G:0.07, T:0.33
Consensus pattern (29 bp):
TATATAAATAAATAGATTTGAAAAGAAAA
Found at i:103119992 original size:29 final size:28
Alignment explanation
Indices: 103119932--103119992 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 28
103119922 CTATATACAT
* *
103119932 AATAGATTTGAAAAGAAAATATATATTA
1 AATAGATTTGAAAAGAAAATATAAATAA
103119960 AATAGATTT-AAAAGAAATTATATAAATAA
1 AATAGATTTGAAAAGAAA--ATATAAATAA
103119989 AATA
1 AATA
103119993 ACATAGAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 8 0.28
28 9 0.31
29 12 0.41
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (28 bp):
AATAGATTTGAAAAGAAAATATAAATAA
Found at i:103122641 original size:18 final size:19
Alignment explanation
Indices: 103122606--103122641 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
103122596 TTGCTTGCTG
*
103122606 GAAATGAAAAAGCAAAAAT
1 GAAATGAAAAAGAAAAAAT
103122625 GAAA-GAAAAAGAAAAAA
1 GAAATGAAAAAGAAAAAA
103122642 GGTGAAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.75, C:0.03, G:0.17, T:0.06
Consensus pattern (19 bp):
GAAATGAAAAAGAAAAAAT
Found at i:103125516 original size:38 final size:35
Alignment explanation
Indices: 103125465--103125540 Score: 91
Period size: 38 Copynumber: 2.1 Consensus size: 35
103125455 AATTGTTAAA
103125465 AAAATACTAAAAATC-CTAAAAGAAATTATTAAAAAACT
1 AAAATACTAAAAATCAC-AAAA-AAATTA-TAAAAAA-T
* *
103125503 AAAATATTCAAAATCACAAAAAAATTATAAAAAAT
1 AAAATACTAAAAATCACAAAAAAATTATAAAAAAT
103125538 AAA
1 AAA
103125541 TAAAAATGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
35 4 0.11
36 7 0.20
37 6 0.17
38 17 0.49
39 1 0.03
ACGTcount: A:0.67, C:0.09, G:0.01, T:0.22
Consensus pattern (35 bp):
AAAATACTAAAAATCACAAAAAAATTATAAAAAAT
Found at i:103125674 original size:18 final size:19
Alignment explanation
Indices: 103125646--103125700 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 19
103125636 ATTAAAAATA
*
103125646 AAAATTGTTAAAAATAT-G
1 AAAATTTTTAAAAATATAG
*
103125664 GAAATTTTT-AAAATATAG
1 AAAATTTTTAAAAATATAG
103125682 AAAATTATTATAAAAATAT
1 AAAATT-TT-TAAAAATAT
103125701 TAAAAATAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
17 7 0.23
18 13 0.43
19 2 0.07
20 1 0.03
21 7 0.23
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.36
Consensus pattern (19 bp):
AAAATTTTTAAAAATATAG
Found at i:103125735 original size:20 final size:20
Alignment explanation
Indices: 103125682--103125744 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 20
103125672 TAAAATATAG
* *
103125682 AAAATTATTATAAAAATATTA
1 AAAATTA-TATGAAAATTTTA
*
103125703 AAAATAATA-GAAAATTTTA
1 AAAATTATATGAAAATTTTA
103125722 AAAATTATATG-AAATTTTA
1 AAAATTATATGAAAATTTTA
103125741 AAAA
1 AAAA
103125745 AGATACAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 28 0.76
20 3 0.08
21 6 0.16
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (20 bp):
AAAATTATATGAAAATTTTA
Found at i:103125745 original size:48 final size:46
Alignment explanation
Indices: 103125644--103125745 Score: 109
Period size: 49 Copynumber: 2.2 Consensus size: 46
103125634 GAATTAAAAA
* * * *
103125644 TAAAAATTGTTAAAAATATGGAAATTTTTAAAATATAGAAAATTAT
1 TAAAAAATATTAAAAATATGAAAATTTTAAAAATATAGAAAATTAT
103125690 TATAAAAATATTAAAAATAATAGAAAATTTTAAAAATTATATG-AAATT-T
1 TA-AAAAATATTAAAAAT-AT-GAAAATTTTAAAAA-TATA-GAAAATTAT
103125739 TAAAAAA
1 TAAAAAA
103125746 GATACAATTT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
46 2 0.04
47 13 0.28
48 7 0.15
49 15 0.32
50 9 0.19
51 1 0.02
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (46 bp):
TAAAAAATATTAAAAATATGAAAATTTTAAAAATATAGAAAATTAT
Found at i:103128133 original size:57 final size:57
Alignment explanation
Indices: 103128072--103128192 Score: 129
Period size: 57 Copynumber: 2.1 Consensus size: 57
103128062 GCCCGGGCGA
*
103128072 GTAATCCAGA-TCAAGCTCT-TTAGAGCATATGTCATAAAAAGGATTCAGCCTGGACTG
1 GTAATCCAGACT-AAGCTCTATT-GAGCATATATCATAAAAAGGATTCAGCCTGGACTG
* * ** * * * *
103128129 GTAATCCTGACTAAGCTCTATTGAGTATATATTGTAGATAGGATTTAGCTTGGACTG
1 GTAATCCAGACTAAGCTCTATTGAGCATATATCATAAAAAGGATTCAGCCTGGACTG
103128186 GTAATCC
1 GTAATCC
103128193 TGTTGTTTAT
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
57 50 0.94
58 3 0.06
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (57 bp):
GTAATCCAGACTAAGCTCTATTGAGCATATATCATAAAAAGGATTCAGCCTGGACTG
Found at i:103128997 original size:76 final size:76
Alignment explanation
Indices: 103128871--103129022 Score: 295
Period size: 76 Copynumber: 2.0 Consensus size: 76
103128861 TATGCTTACT
103128871 TAGTTTTATTTCCCTATTTTATAGTAAATCAAAAGCTCGTTGGATTGAAATCTTGGCGGAGATCA
1 TAGTTTTATTTCCCTATTTTATAGTAAATCAAAAGCTCGTTGGATTGAAATCTTGGCGGAGATCA
103128936 CTCACACTATC
66 CTCACACTATC
*
103128947 TAGTTTTATTTCCCTGTTTTATAGTAAATCAAAAGCTCGTTGGATTGAAATCTTGGCGGAGATCA
1 TAGTTTTATTTCCCTATTTTATAGTAAATCAAAAGCTCGTTGGATTGAAATCTTGGCGGAGATCA
103129012 CTCACACTATC
66 CTCACACTATC
103129023 CATCGACCCA
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 75 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.37
Consensus pattern (76 bp):
TAGTTTTATTTCCCTATTTTATAGTAAATCAAAAGCTCGTTGGATTGAAATCTTGGCGGAGATCA
CTCACACTATC
Found at i:103130341 original size:46 final size:46
Alignment explanation
Indices: 103130273--103130363 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
103130263 TATATATACA
* * *
103130273 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* ** *
103130319 CATCTCATACACATTTTGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
103130364 ATACACATCC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.27, C:0.31, G:0.07, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:103130406 original size:22 final size:22
Alignment explanation
Indices: 103130380--103130455 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
103130370 ATCCACGTTC
103130380 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
103130402 ATCACATGTATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
103130427 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
103130449 ATCACAT
1 ATCACAT
103130456 ATATGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 17 0.40
23 8 0.19
24 7 0.17
25 10 0.24
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.36
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:103130455 original size:94 final size:94
Alignment explanation
Indices: 103130343--103130856 Score: 695
Period size: 94 Copynumber: 5.5 Consensus size: 94
103130333 TTTGCATTAA
* ** ** * * *
103130343 CCATTCGGCTTTCCCACATATATACACATCCACGTTCATCACATTGGCCATTCTGCCTTATCACA
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
** *
103130408 TGTATGCATGTTCACATTTATCACATTGG
66 CATATGCATGTTCACATTCATCACATTGG
* * * *
103130437 CCATTCGGCCTTATCACATATATGCATGTTCATATTCTTCACATTGGCCATTCGACCTTATCACA
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
103130502 CATATGCATGTTCACATTCATCACATTGG
66 CATATGCATGTTCACATTCATCACATTGG
103130531 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* *
103130596 CGTATGCATGTTCATATTCATCACATTGG
66 CATATGCATGTTCACATTCATCACATTGG
** *
103130625 CCATTCGGCCTTATCACACGTATACATGTTCACATTCATCACATTGGCCATTCGGTCTTATCACA
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* * *
103130690 CAAATACATGTTCACATTCATCACATTTG
66 CATATGCATGTTCACATTCATCACATTGG
* * * * * *
103130719 CCATTCGGCCTTAGCACACAAATGCATGTTCACATTCATCACATTTGCCATTCGGCCTTAGCACA
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* *
103130784 CAAATGCATGTTCACATTCATCACATTTG
66 CATATGCATGTTCACATTCATCACATTGG
* * * ** *
103130813 CCATTCGGCCTTAGCTCATGTATACACATTCACATCCATCACAT
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACAT
103130857 AAAATCCTAA
Statistics
Matches: 375, Mismatches: 45, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 375 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (94 bp):
CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
CATATGCATGTTCACATTCATCACATTGG
Found at i:103130548 original size:22 final size:22
Alignment explanation
Indices: 103130521--103130595 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
103130511 GTTCACATTC
103130521 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
*** * *
103130543 ATCACATATATACATGTTC-ACATT
1 ATCACAT-TGGCCA--TTCGGCCTT
103130567 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
103130590 ATCACA
1 ATCACA
103130596 CGTATGCATG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 16 0.42
23 6 0.16
24 6 0.16
25 10 0.26
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:103130761 original size:23 final size:23
Alignment explanation
Indices: 103130735--103130808 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
103130725 GGCCTTAGCA
103130735 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
** * *
103130758 CACATTTGCCA--TTCGGCCTTAGCA-
1 CACAAATG-CATGTTC-ACATT--CAT
103130782 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
103130805 CACA
1 CACA
103130809 TTTGCCATTC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 15 0.42
24 11 0.31
25 5 0.14
ACGTcount: A:0.31, C:0.30, G:0.11, T:0.28
Consensus pattern (23 bp):
CACAAATGCATGTTCACATTCAT
Found at i:103130785 original size:24 final size:24
Alignment explanation
Indices: 103130711--103130785 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
103130701 TCACATTCAT
103130711 CACATTTGCCATTCGGCCTTAGCA
1 CACATTTGCCATTCGGCCTTAGCA
** * *
103130735 CACAAATG-CATGTTC-ACATT--CA
1 CACATTTGCCA--TTCGGCCTTAGCA
103130757 TCACATTTGCCATTCGGCCTTAGCA
1 -CACATTTGCCATTCGGCCTTAGCA
103130782 CACA
1 CACA
103130786 AATGCATGTT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 11 0.31
24 15 0.42
25 5 0.14
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (24 bp):
CACATTTGCCATTCGGCCTTAGCA
Found at i:103130827 original size:47 final size:47
Alignment explanation
Indices: 103130377--103130825 Score: 682
Period size: 47 Copynumber: 9.6 Consensus size: 47
103130367 CACATCCACG
* **
103130377 TTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
103130424 TTTATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
103130471 TTCTTCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
103130518 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
103130565 TTCATCACATTGGCCATTCGGCCTTATCACACGTATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
103130612 TTCATCACATTGGCCATTCGGCCTTATCACACGTATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
103130659 TTCATCACATTGGCCATTCGGTCTTATCACACAAATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
103130706 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
103130753 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
103130800 TTCATCACATTTGCCATTCGGCCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
103130826 GCTCATGTAT
Statistics
Matches: 376, Mismatches: 26, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 376 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
Found at i:103133648 original size:40 final size:40
Alignment explanation
Indices: 103133599--103134073 Score: 662
Period size: 40 Copynumber: 11.9 Consensus size: 40
103133589 ACACATCACC
*
103133599 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* * * * *
103133639 AGTACGAATGCTCTTCGGGACTTAACCCTGATATAACTCC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* * *
103133679 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATGACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* * ** *
103133719 AGTACGTATGCTCTTCGGGACTTAGCCTTGATATAACTCT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* *
103133759 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACTCT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* *
103133799 AGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* * * *
103133839 AGCACGTATGCTCTTTGGGACTTAACCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* *
103133879 AGCGCGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* * *
103133919 AGCACGAATGCTTTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* *
103133959 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
* *
103133999 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
*
103134039 AGCAAGAATGCTCTTCGGGACTTAGCCCGGATATA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
103134074 TCATACTGAA
Statistics
Matches: 392, Mismatches: 43, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 392 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACT
Found at i:103135586 original size:46 final size:46
Alignment explanation
Indices: 103135518--103135608 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
103135508 TATATATACA
* * *
103135518 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * *
103135564 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
103135609 ATACACATCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:103135651 original size:22 final size:22
Alignment explanation
Indices: 103135625--103135700 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
103135615 ATCCACGTTC
103135625 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
103135647 ATCACATGTATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
103135672 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
103135694 ATCACAT
1 ATCACAT
103135701 ATATGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 17 0.40
23 8 0.19
24 7 0.17
25 10 0.24
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.36
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:103135793 original size:22 final size:22
Alignment explanation
Indices: 103135766--103135840 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
103135756 GTTCACATTC
103135766 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
*** * *
103135788 ATCACATATATACATGTTC-ACATT
1 ATCACAT-TGGCCA--TTCGGCCTT
103135812 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
103135835 ATCACA
1 ATCACA
103135841 CGTATGCATG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 16 0.42
23 6 0.16
24 6 0.16
25 10 0.26
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:103136030 original size:24 final size:24
Alignment explanation
Indices: 103135956--103136030 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
103135946 TCACATTCAT
103135956 CACATTTGCCATTCGGCCTTAGCA
1 CACATTTGCCATTCGGCCTTAGCA
** * *
103135980 CACAAATG-CATGTTC-ACATT--CA
1 CACATTTGCCA--TTCGGCCTTAGCA
103136002 TCACATTTGCCATTCGGCCTTAGCA
1 -CACATTTGCCATTCGGCCTTAGCA
103136027 CACA
1 CACA
103136031 AATGCATGTT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 11 0.31
24 15 0.42
25 5 0.14
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (24 bp):
CACATTTGCCATTCGGCCTTAGCA
Found at i:103136119 original size:47 final size:47
Alignment explanation
Indices: 103135622--103136117 Score: 731
Period size: 47 Copynumber: 10.6 Consensus size: 47
103135612 CACATCCACG
* **
103135622 TTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
103135669 TTTATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
103135716 TTCTTCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
103135763 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
103135810 TTCATCACATTGGCCATTCGGCCTTATCACACGTATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
103135857 TTCATCACATTGGCCATTTGGCCTTATCACACGTATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
103135904 TTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
103135951 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
103135998 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
** * *
103136045 TTCATCACATTTTCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
103136092 TTCATCACATTTGCCATTTGGCCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
103136118 GCTCATGTAT
Statistics
Matches: 418, Mismatches: 31, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 418 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
Found at i:103139050 original size:14 final size:14
Alignment explanation
Indices: 103139031--103139059 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
103139021 GAACTGATAA
103139031 TTCTGTATCTGATT
1 TTCTGTATCTGATT
103139045 TTCTGTATCTGATT
1 TTCTGTATCTGATT
103139059 T
1 T
103139060 GGGCGGGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.59
Consensus pattern (14 bp):
TTCTGTATCTGATT
Found at i:103140268 original size:4 final size:4
Alignment explanation
Indices: 103140259--103140296 Score: 51
Period size: 4 Copynumber: 9.2 Consensus size: 4
103140249 ATTTTTATAA
103140259 TATT TATT TATT TATT T-TCT ATATT TATT TATT TATT T
1 TATT TATT TATT TATT TAT-T -TATT TATT TATT TATT T
103140297 TTAGTAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
3 1 0.03
4 27 0.87
5 2 0.06
6 1 0.03
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:103140284 original size:21 final size:21
Alignment explanation
Indices: 103140258--103140297 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
103140248 TATTTTTATA
103140258 ATATTTATTTATTTATTTTCT
1 ATATTTATTTATTTATTTTCT
103140279 ATATTTATTTATTTATTTT
1 ATATTTATTTATTTATTTT
103140298 TAGTAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (21 bp):
ATATTTATTTATTTATTTTCT
Found at i:103141165 original size:22 final size:20
Alignment explanation
Indices: 103141132--103141175 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
103141122 AATTTTATAA
103141132 TTTTAATTTTTTATAACTTTT
1 TTTTAATTTTTTATAA-TTTT
*
103141153 TTTTATATTTTTTATGATTTT
1 TTTTA-ATTTTTTATAATTTT
103141174 TT
1 TT
103141176 AATAAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.75
Consensus pattern (20 bp):
TTTTAATTTTTTATAATTTT
Found at i:103141184 original size:22 final size:22
Alignment explanation
Indices: 103141136--103141185 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
103141126 TTATAATTTT
*
103141136 AATTTTTTATAACTTTTTTTTA
1 AATTTTTTATAACTTTTTTATA
* *
103141158 TATTTTTTATGA-TTTTTTAATA
1 AATTTTTTATAACTTTTTT-ATA
103141180 AATTTT
1 AATTTT
103141186 AAATTTTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (22 bp):
AATTTTTTATAACTTTTTTATA
Found at i:103142884 original size:40 final size:40
Alignment explanation
Indices: 103142835--103143002 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
103142825 TCTTCGGAAT
* * *
103142835 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
103142874 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
103142914 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
103142954 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
103142994 TTAGCCCGG
1 TTAGCCCGG
103143003 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:103151189 original size:40 final size:40
Alignment explanation
Indices: 103151141--103151308 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
103151131 CTTTCGGAAT
* * *
103151141 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
103151180 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
103151220 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
103151260 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
103151300 TTAGCCCGG
1 TTAGCCCGG
103151309 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:103160296 original size:40 final size:40
Alignment explanation
Indices: 103160251--103160418 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
103160241 CGGAATATAA
103160251 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
103160291 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
103160331 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
103160371 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
103160411 CCGGATAT
1 CCGGATAT
103160419 CATTCAATTT
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:103160401 original size:80 final size:80
Alignment explanation
Indices: 103160267--103160416 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
103160257 ATAACCACGT
* *
103160267 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
103160332 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
103160347 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
103160410 CCCGGAT
64 CCCGGAT
103160417 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:103164820 original size:42 final size:42
Alignment explanation
Indices: 103164760--103164841 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
103164750 GGTGCAGGGG
* * *
103164760 ACACACGGCCATACCACACGCCCGTGGGGCTGTCCGTGTGTC
1 ACACACGGCCATAACACACACCCGTGGGGCTATCCGTGTGTC
* *
103164802 ACACACGGCC-TAAACACACACCCGTGTGTCTATCCGTGTG
1 ACACACGGCCAT-AACACACACCCGTGGGGCTATCCGTGTG
103164842 GACCTTTTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.03
42 33 0.97
ACGTcount: A:0.21, C:0.37, G:0.24, T:0.18
Consensus pattern (42 bp):
ACACACGGCCATAACACACACCCGTGGGGCTATCCGTGTGTC
Found at i:103167845 original size:36 final size:36
Alignment explanation
Indices: 103167805--103168004 Score: 143
Period size: 36 Copynumber: 5.3 Consensus size: 36
103167795 GGTTTATCCA
*
103167805 ACTAGCGCTGGGCACAAACTTTCATCAGTTTATTTG
1 ACTAGCGCTGGGCACAAACTTTCGTCAGTTTATTTG
* * *
103167841 ACTAGTGTTGGGCACACCATTA-TATTTGTC-GATTTATTTG
1 ACTAGCGCTGGGCACA--A--ACT-TTCGTCAG-TTTATTTG
* *
103167881 ATTAGCGTTGGGCACAAACTTTCGTCAGTTTATTTG
1 ACTAGCGCTGGGCACAAACTTTCGTCAGTTTATTTG
* * * * * ***
103167917 ACTTGTGCTGGCCACACCATAATATTTGTCAGTTTATCCA
1 ACTAGCGCTGGGCACA--A-ACT-TTCGTCAGTTTATTTG
* *
103167957 ACTAGCACTGGGCACAAACTTTCGTCAGTTTATCTG
1 ACTAGCGCTGGGCACAAACTTTCGTCAGTTTATTTG
*
103167993 ACTAGTGCTGGG
1 ACTAGCGCTGGG
103168005 AATATCATTA
Statistics
Matches: 125, Mismatches: 27, Indels: 24
0.71 0.15 0.14
Matches are distributed among these distances:
36 62 0.50
37 4 0.03
38 4 0.03
39 4 0.03
40 51 0.41
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.35
Consensus pattern (36 bp):
ACTAGCGCTGGGCACAAACTTTCGTCAGTTTATTTG
Found at i:103167952 original size:40 final size:40
Alignment explanation
Indices: 103167829--103167953 Score: 127
Period size: 40 Copynumber: 3.2 Consensus size: 40
103167819 CAAACTTTCA
* *
103167829 TCAGTTTATTTGACTAGTGTTGGGCACACCATTATATTTG
1 TCAGTTTATTTGACTTGTGTTGGGCACACCATAATATTTG
* * *
103167869 TC-GATTTATTTGA-TTAGCGTTGGGCACA--A-ACT-TTCG
1 TCAG-TTTATTTGACTT-GTGTTGGGCACACCATAATATTTG
* *
103167905 TCAGTTTATTTGACTTGTGCTGGCCACACCATAATATTTG
1 TCAGTTTATTTGACTTGTGTTGGGCACACCATAATATTTG
103167945 TCAGTTTAT
1 TCAGTTTAT
103167954 CCAACTAGCA
Statistics
Matches: 67, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
36 23 0.34
37 4 0.06
38 2 0.03
39 4 0.06
40 34 0.51
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.42
Consensus pattern (40 bp):
TCAGTTTATTTGACTTGTGTTGGGCACACCATAATATTTG
Found at i:103168037 original size:76 final size:76
Alignment explanation
Indices: 103167768--103168028 Score: 335
Period size: 76 Copynumber: 3.4 Consensus size: 76
103167758 GGTTGTTACA
* * * * *
103167768 AGTGTTGGGCCCACCATTATATTTTTCGGTTTATCCAACTAGCGCTGGGCACAAACTTTCATCAG
1 AGTGCTGGGCACACCATTATATTTGTCGATTTATCCAACTAGCGCTGGGCACAAACTTTCGTCAG
103167833 TTTATTTGACT
66 TTTATTTGACT
* *** * *
103167844 AGTGTTGGGCACACCATTATATTTGTCGATTTATTTGATTAGCGTTGGGCACAAACTTTCGTCAG
1 AGTGCTGGGCACACCATTATATTTGTCGATTTATCCAACTAGCGCTGGGCACAAACTTTCGTCAG
103167909 TTTATTTGACT
66 TTTATTTGACT
* * * *
103167920 TGTGCTGGCCACACCATAATATTTGTC-AGTTTATCCAACTAGCACTGGGCACAAACTTTCGTCA
1 AGTGCTGGGCACACCATTATATTTGTCGA-TTTATCCAACTAGCGCTGGGCACAAACTTTCGTCA
*
103167984 GTTTATCTGACT
65 GTTTATTTGACT
* * *
103167996 AGTGCTGGGAATATCATTATATTTGTCGATTTA
1 AGTGCTGGGCACACCATTATATTTGTCGATTTA
103168029 ACTGACTAGA
Statistics
Matches: 157, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
75 1 0.01
76 155 0.99
77 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.38
Consensus pattern (76 bp):
AGTGCTGGGCACACCATTATATTTGTCGATTTATCCAACTAGCGCTGGGCACAAACTTTCGTCAG
TTTATTTGACT
Found at i:103169525 original size:13 final size:11
Alignment explanation
Indices: 103169497--103169539 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
103169487 AGTTAAATAT
103169497 TATTTTATTAA
1 TATTTTATTAA
103169508 TATTTTACTTAGA
1 TATTTTA-TTA-A
*
103169521 TA-TTTATTAT
1 TATTTTATTAA
103169531 TATTTTATT
1 TATTTTATT
103169540 TAGAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 2 0.07
11 16 0.57
12 7 0.25
13 3 0.11
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:103169526 original size:23 final size:23
Alignment explanation
Indices: 103169500--103169543 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
103169490 TAAATATTAT
103169500 TTTATTAATATTTTACTTAGATA
1 TTTATTAATATTTTACTTAGATA
* *
103169523 TTTATTATTATTTTATTTAGA
1 TTTATTAATATTTTACTTAGA
103169544 AAATGGTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (23 bp):
TTTATTAATATTTTACTTAGATA
Found at i:103172313 original size:11 final size:12
Alignment explanation
Indices: 103172294--103172366 Score: 62
Period size: 12 Copynumber: 6.2 Consensus size: 12
103172284 TATATGATTT
103172294 GAATATGAAATGA
1 GAATA-GAAATGA
*
103172307 GACT-GAAATGA
1 GAATAGAAATGA
* *
103172318 GAGTGGAAATGA
1 GAATAGAAATGA
103172330 GAATAGAAATGA
1 GAATAGAAATGA
* *
103172342 -AATTGATATGA
1 GAATAGAAATGA
103172353 GAA-AGAAAATGA
1 GAATAG-AAATGA
103172365 GA
1 GA
103172367 TTGATTATGA
Statistics
Matches: 49, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
11 20 0.41
12 26 0.53
13 3 0.06
ACGTcount: A:0.52, C:0.01, G:0.27, T:0.19
Consensus pattern (12 bp):
GAATAGAAATGA
Found at i:103172352 original size:23 final size:24
Alignment explanation
Indices: 103172326--103172376 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
103172316 GAGAGTGGAA
103172326 ATGAGAATAG-AAATGAAATTGA-T
1 ATGAGAA-AGAAAATGAAATTGATT
*
103172349 ATGAGAAAGAAAATGAGATTGATT
1 ATGAGAAAGAAAATGAAATTGATT
103172373 ATGA
1 ATGA
103172377 AATTTTGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 2 0.08
23 18 0.72
24 5 0.20
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.25
Consensus pattern (24 bp):
ATGAGAAAGAAAATGAAATTGATT
Done.