Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 33 of 433
Found at i:8496340 original size:48 final size:48
Alignment explanation
Indices: 8496288--8496390 Score: 145
Period size: 48 Copynumber: 2.1 Consensus size: 48
8496278 TCTCTAATGG
*
8496288 TTGACTGTTACTGAATAATAAAGATCAATTGATTGC-TACTGAAAAATA
1 TTGACTGTTACTGAATAATAAAGATAAATTGATT-CATACTGAAAAATA
* ** *
8496336 TTGACTGTTACTGAATGATATTGATAAATTGATTCATATTGAAAAATA
1 TTGACTGTTACTGAATAATAAAGATAAATTGATTCATACTGAAAAATA
8496384 TTGACTG
1 TTGACTG
8496391 ATATTGAGCT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
47 1 0.02
48 48 0.98
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.37
Consensus pattern (48 bp):
TTGACTGTTACTGAATAATAAAGATAAATTGATTCATACTGAAAAATA
Found at i:8497900 original size:139 final size:139
Alignment explanation
Indices: 8497719--8497998 Score: 497
Period size: 139 Copynumber: 2.0 Consensus size: 139
8497709 ATTTACTAAG
*
8497719 TAAAGGATTCCGAAAGGACCTAATGTGATTTCCAAACTCATGAAAGATCGAGTTTCCATGGAATG
1 TAAAGGATTCCGAAAGGACCTAATGTGATTTCCAAACTCATGAAAGATCGAGTTGCCATGGAATG
*
8497784 TTTTTCCGAATGTTATTAAGCATGTTGATAATAAATTGAGTTTAATTAAAGTAATTGTCCTAGTT
66 TTTTTCCGAATGTTATTAAGCATGTTGATAATAAACTGAGTTTAATTAAAGTAATTGTCCTAGTT
8497849 TATTTACGT
131 TATTTACGT
** * *
8497858 TAAAGGATTTTGAAAGGACCTAATGTGGTTTTCAAACTCATGAAAGATCGAGTTGCCATGGAATG
1 TAAAGGATTCCGAAAGGACCTAATGTGATTTCCAAACTCATGAAAGATCGAGTTGCCATGGAATG
8497923 TTTTTCCGAATGTTATTAAGCATGTTGATAATAAACTGAGTTTAATTAAAGTAATTGTCCTAGTT
66 TTTTTCCGAATGTTATTAAGCATGTTGATAATAAACTGAGTTTAATTAAAGTAATTGTCCTAGTT
*
8497988 TATTTATGT
131 TATTTACGT
8497997 TA
1 TA
8497999 TAATTGTTGC
Statistics
Matches: 134, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
139 134 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.38
Consensus pattern (139 bp):
TAAAGGATTCCGAAAGGACCTAATGTGATTTCCAAACTCATGAAAGATCGAGTTGCCATGGAATG
TTTTTCCGAATGTTATTAAGCATGTTGATAATAAACTGAGTTTAATTAAAGTAATTGTCCTAGTT
TATTTACGT
Found at i:8501335 original size:14 final size:14
Alignment explanation
Indices: 8501300--8501326 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8501290 TTTCTTGATT
8501300 GAAAATGATTTCTA
1 GAAAATGATTTCTA
8501314 GAAAATGATTTCT
1 GAAAATGATTTCT
8501327 GGAATATGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (14 bp):
GAAAATGATTTCTA
Found at i:8501684 original size:13 final size:13
Alignment explanation
Indices: 8501666--8501697 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8501656 TTCAAACCAC
*
8501666 AATTAATACTACA
1 AATTAACACTACA
8501679 AATTAACACTACA
1 AATTAACACTACA
8501692 AATTAA
1 AATTAA
8501698 ATATATAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (13 bp):
AATTAACACTACA
Found at i:8501771 original size:19 final size:19
Alignment explanation
Indices: 8501743--8501780 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8501733 TTTCCAAGTG
*
8501743 CATAACTAGTATTACACCA
1 CATAACTAGTACTACACCA
*
8501762 CATAATTAGTACTACACCA
1 CATAACTAGTACTACACCA
8501781 TATTAAAGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.26, G:0.05, T:0.26
Consensus pattern (19 bp):
CATAACTAGTACTACACCA
Found at i:8507099 original size:21 final size:22
Alignment explanation
Indices: 8507055--8507106 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
8507045 TTTCTAATTC
* *
8507055 TGATATGTTTTGCATCTGTATT
1 TGATCTGTTCTGCATCTGTATT
8507077 TGATCTGTTCTGCATCT-TATT
1 TGATCTGTTCTGCATCTGTATT
*
8507098 TGAACTGTT
1 TGATCTGTT
8507107 ATGATAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.17, C:0.13, G:0.17, T:0.52
Consensus pattern (22 bp):
TGATCTGTTCTGCATCTGTATT
Found at i:8509382 original size:2 final size:2
Alignment explanation
Indices: 8509375--8509401 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8509365 AGAAAATGAC
8509375 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8509402 CACATAAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8513811 original size:2 final size:2
Alignment explanation
Indices: 8513804--8513838 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
8513794 ATTTTTCTTT
* *
8513804 TA TA TA TA TA TA TA TA TA TT TA TA AA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8513839 GTGTTGTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8514646 original size:31 final size:30
Alignment explanation
Indices: 8514600--8514660 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
8514590 AGCAATCTTA
*
8514600 TTAATTATAATTTATTAT-ATAAAAATGATT
1 TTAATTAAAATTTATTATAAT-AAAATGATT
*
8514630 TTAATTAAAATATTATTTTAATAAAATGATT
1 TTAATTAAAAT-TTATTATAATAAAATGATT
8514661 AAATTTCATG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 10 0.37
31 15 0.56
32 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (30 bp):
TTAATTAAAATTTATTATAATAAAATGATT
Found at i:8514654 original size:16 final size:16
Alignment explanation
Indices: 8514618--8514661 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
8514608 AATTTATTAT
*
8514618 ATAAAA-ATGATTTTA
1 ATAAAATATTATTTTA
8514633 ATTAAAATATTATTTTA
1 A-TAAAATATTATTTTA
8514650 ATAAAATGATTA
1 ATAAAAT-ATTA
8514662 AATTTCATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 1 0.04
16 11 0.44
17 13 0.52
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (16 bp):
ATAAAATATTATTTTA
Found at i:8514849 original size:32 final size:33
Alignment explanation
Indices: 8514788--8514859 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 33
8514778 TTATAAATTT
* *
8514788 ATAAATTAATTACTTGAATTTAGTGACTCA-TG
1 ATAAATTAATTAATTGAATTTAGTAACTCATTG
*
8514820 ATAAATTAATTAATTTAATTT-GATAACTCATTG
1 ATAAATTAATTAATTGAATTTAG-TAACTCATTG
*
8514853 ATTAATT
1 ATAAATT
8514860 GAACTTGTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
31 1 0.03
32 25 0.74
33 8 0.24
ACGTcount: A:0.40, C:0.07, G:0.08, T:0.44
Consensus pattern (33 bp):
ATAAATTAATTAATTGAATTTAGTAACTCATTG
Found at i:8516388 original size:20 final size:21
Alignment explanation
Indices: 8516347--8516388 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8516337 TCTAATTTTG
*
8516347 TTTCATTTAAAATATAAAATT
1 TTTCATATAAAATATAAAATT
*
8516368 TTTCATATAAAA-ATAATATT
1 TTTCATATAAAATATAAAATT
8516388 T
1 T
8516389 ATTTTCTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (21 bp):
TTTCATATAAAATATAAAATT
Found at i:8516555 original size:31 final size:31
Alignment explanation
Indices: 8516520--8516579 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
8516510 AAATAATTTT
* * *
8516520 ACTCTTTTTGAAAAGTTGATGGTAAAATTAG
1 ACTCTTTTTAAAAAATTGAGGGTAAAATTAG
*
8516551 ACTCTTTTTAAAAAATTGAGGGTCAAATT
1 ACTCTTTTTAAAAAATTGAGGGTAAAATT
8516580 TAACTAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (31 bp):
ACTCTTTTTAAAAAATTGAGGGTAAAATTAG
Found at i:8519955 original size:2 final size:2
Alignment explanation
Indices: 8519948--8519973 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8519938 ACTAACATGC
8519948 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8519974 GTTTTCTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8526010 original size:25 final size:24
Alignment explanation
Indices: 8525963--8526025 Score: 72
Period size: 25 Copynumber: 2.6 Consensus size: 24
8525953 TGCTTTGTTA
*
8525963 TATTTACTTCAAATTATTTTATAT
1 TATTTACTTCAAATTATTGTATAT
* *
8525987 TATTTATCTTTAAGTTATTGTATAT
1 TATTTA-CTTCAAATTATTGTATAT
* *
8526012 TATATATTTCAAAT
1 TATTTACTTCAAAT
8526026 AACTCTTTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
24 11 0.35
25 20 0.65
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.57
Consensus pattern (24 bp):
TATTTACTTCAAATTATTGTATAT
Found at i:8529054 original size:17 final size:17
Alignment explanation
Indices: 8529014--8529121 Score: 153
Period size: 17 Copynumber: 6.1 Consensus size: 17
8529004 AAGATTGTAT
8529014 ATCATATCTAAGATTGC
1 ATCATATCTAAGATTGC
*
8529031 AATCATATCTAAGATTAC
1 -ATCATATCTAAGATTGC
8529049 ATCATATCTAAGATTGC
1 ATCATATCTAAGATTGC
*
8529066 AATCATATCTAAGATTGT
1 -ATCATATCTAAGATTGC
8529084 ATCATATCTAAGATTGC
1 ATCATATCTAAGATTGC
*
8529101 ATATCACATCTAAGATTGC
1 --ATCATATCTAAGATTGC
8529120 AT
1 AT
8529122 ATCATTAAGG
Statistics
Matches: 82, Mismatches: 5, Indels: 7
0.87 0.05 0.07
Matches are distributed among these distances:
17 34 0.41
18 32 0.39
19 16 0.20
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (17 bp):
ATCATATCTAAGATTGC
Found at i:8529057 original size:35 final size:35
Alignment explanation
Indices: 8529014--8529117 Score: 172
Period size: 35 Copynumber: 2.9 Consensus size: 35
8529004 AAGATTGTAT
8529014 ATCATATCTAAGATTGCAATCATATCTAAGATTAC
1 ATCATATCTAAGATTGCAATCATATCTAAGATTAC
**
8529049 ATCATATCTAAGATTGCAATCATATCTAAGATTGT
1 ATCATATCTAAGATTGCAATCATATCTAAGATTAC
*
8529084 ATCATATCTAAGATTGCATATCACATCTAAGATT
1 ATCATATCTAAGATTGCA-ATCATATCTAAGATT
8529118 GCATATCATT
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
35 51 0.78
36 14 0.22
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (35 bp):
ATCATATCTAAGATTGCAATCATATCTAAGATTAC
Found at i:8529956 original size:207 final size:207
Alignment explanation
Indices: 8529492--8530619 Score: 1853
Period size: 207 Copynumber: 5.5 Consensus size: 207
8529482 AAATCTGATT
* * *
8529492 CTTCAATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAAATTTGCTTCAGCGTAAACAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAAACTTGCTTCAACGTAAACAC
* * * *
8529557 GCGAAAGCCAAATCAGCTATGTTTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * ** * * *
8529622 GGATC-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATATGTCTGTCCTCCGTTGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
*
8529686 GGAAACGCCAAA
196 GGAGACGCCAAA
* * *
8529698 CTTCGATTTGTTATCTGACAATATAGAGATGCCAAATCATCTTAAACTTGCTTCAACGTAAACAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAAACTTGCTTCAACGTAAACAC
*
8529763 GTGAAAGCCAAATCAGCTATATCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
8529828 GGATCTTGCTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTGTCTGCCCTCTGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
8529893 GGAGACGCCAAA
196 GGAGACGCCAAA
* * * * *
8529905 CTTCAATTTGTTATTTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAACGTAAACAT
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAAACTTGCTTCAACGTAAACAC
*
8529970 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAACCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
8530035 GGATCTTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
8530100 GGAGACGCCAAA
196 GGAGACGCCAAA
** * *
8530112 CTTTGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAAACTTGCTTCAACGTAAACAC
*
8530177 GTGAAAGCCAAATCAGCTACGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
8530242 GGATCTTGCTCCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
8530307 GGAGACGCCAAA
196 GGAGACGCCAAA
* *
8530319 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAAACTTGCTTCAATGTAAACAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAAACTTGCTTCAACGTAAACAC
8530384 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
8530449 GGATCTTACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
8530514 GGAGACGCCAAA
196 GGAGACGCCAAA
* * * * * *
8530526 CATCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCATAAGCAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAAACTTGCTTCAACGTAAACAC
8530591 GTGAAAGCCAAATCAGCTATGTCTTCGAT
66 GTGAAAGCCAAATCAGCTATGTCTTCGAT
8530620 CTGCTCTCCG
Statistics
Matches: 861, Mismatches: 60, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
206 124 0.14
207 737 0.86
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (207 bp):
CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAAACTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
GGAGACGCCAAA
Found at i:8530909 original size:87 final size:86
Alignment explanation
Indices: 8530748--8531117 Score: 476
Period size: 87 Copynumber: 4.4 Consensus size: 86
8530738 CTATACTTTA
*
8530748 ACCTGTTACCCTACTGCTTAGGGGGTTAAGGC--G-CATCTTCGATCTGCTCCACTACTGCTTAG
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCATC-TCGATCTGCTCCACTACTGCTTAG
*
8530810 GGAGACAAGATCTGTAATTTTG
65 GGAGATAAGATCTGTAATTTTG
* * * * *
8530832 ACCTGTTACCCTACAGGTTAGGGGATTAAGGCGAGTCATCATTGATCTGTTCCGCTACTGCTTAG
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCATC-TCGATCTGCTCCACTACTGCTTAG
8530897 GGAGATAAGATCTGTAATTTT-
65 GGAGATAAGATCTGTAATTTTG
* * * *
8530918 ATCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCGTCGTCAATCTGCTCCGCTACTGCTTA
1 A-CCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCATC-TCGATCTGCTCCACTACTGCTTA
8530983 GGGAGATAAGATC--T-A---TG
64 GGGAGATAAGATCTGTAATTTTG
*
8531000 AACCTGCTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T-TCGATCTGCTCCACTACTGCTTAG
1 -ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCATCTCGATCTGCTCCACTACTGCTTAG
* * *
8531063 GGAGATAAGATCTGCAAATTTA
65 GGAGATAAGATCTGTAATTTTG
8531085 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
1 ACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
8531118 TTGAATTTTG
Statistics
Matches: 251, Mismatches: 23, Indels: 24
0.84 0.08 0.08
Matches are distributed among these distances:
79 34 0.14
81 2 0.01
82 35 0.14
83 1 0.00
84 62 0.25
85 2 0.01
86 2 0.01
87 113 0.45
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (86 bp):
ACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCATCTCGATCTGCTCCACTACTGCTTAGG
GAGATAAGATCTGTAATTTTG
Found at i:8530933 original size:43 final size:43
Alignment explanation
Indices: 8530799--8530941 Score: 134
Period size: 43 Copynumber: 3.3 Consensus size: 43
8530789 ATCTGCTCCA
*
8530799 CTACTGCTTAGGGAGACAAGATCTGTAATTTTGA-CCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTT-ATCCTGTTACC
* * * * * *
8530842 CTACAGGTTAGGG-GATTAAG-GCGAGTCATCATTGAT-CTGTT-CC
1 CTACTGCTTAGGGAGA-TAAGATC-TGTAAT--TTTATCCTGTTACC
8530885 GCTACTGCTTAGGGAGATAAGATCTGTAATTTTATCCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTGTAATTTTATCCTGTTACC
8530929 CTACTGCTTAGGG
1 CTACTGCTTAGGG
8530942 GGTTAAGGCG
Statistics
Matches: 77, Mismatches: 13, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
42 7 0.09
43 38 0.49
44 27 0.35
45 5 0.06
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (43 bp):
CTACTGCTTAGGGAGATAAGATCTGTAATTTTATCCTGTTACC
Found at i:8531016 original size:38 final size:38
Alignment explanation
Indices: 8530965--8531075 Score: 113
Period size: 41 Copynumber: 2.8 Consensus size: 38
8530955 CGTCGTCAAT
*
8530965 CTGCTCCGCTACTGCTTAGGGAGATAAGATCTATGAAC
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTATGAAC
*
8531003 CTGCTACC-CTACTGCTTAGGG-GATTAAGGCGAGTCT-TCG-AT
1 CTGCT-CCACTACTGCTTAGGGAGA-TAA---GA-TCTAT-GAAC
8531044 CTGCTCCACTACTGCTTAGGGAGATAAGATCT
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCT
8531076 GCAAATTTAA
Statistics
Matches: 63, Mismatches: 1, Indels: 19
0.76 0.01 0.23
Matches are distributed among these distances:
37 5 0.08
38 23 0.37
39 2 0.03
40 2 0.03
41 25 0.40
42 6 0.10
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.28
Consensus pattern (38 bp):
CTGCTCCACTACTGCTTAGGGAGATAAGATCTATGAAC
Found at i:8531092 original size:166 final size:167
Alignment explanation
Indices: 8530744--8531117 Score: 508
Period size: 166 Copynumber: 2.2 Consensus size: 167
8530734 TCTGCTATAC
*
8530744 TTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCATCTTCGATCTGCTCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCATCTTCAATCTGCTCCACTACTGCTTA
* *
8530809 GGGAGACAAGATCTGTAATTTTGACCTGTTACCCTACAGGTTAGGGGATTAAGGCGAGTCATCAT
66 GGGAGACAAGATC-GTAA--TTGACCTGCTACCCTACAGCTTAGGGGATTAAGGCGAGTCAT-AT
* * * * *
8530874 TGATCTGTTCCGCTACTGCTTAGGGAGATAAGATCTGTAAT
127 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAA
* *
8530915 TTTATCCTGTTACCCTACTGCTTAGGGGGTTAAGGCG-AGTCGTCGTCAATCTGCTCCGCTACTG
1 TTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCA-TC-T--TCAATCTGCTCCACTACTG
* *
8530979 CTTAGGGAGATAAGATC-T-A-TGAACCTGCTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T-
62 CTTAGGGAGACAAGATCGTAATTG-ACCTGCTACCCTACAGCTTAGGGGATTAAGGCGAGTCATA
8531039 TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAA
126 TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAA
*
8531081 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
1 TTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCG
8531118 TTGAATTTTG
Statistics
Matches: 184, Mismatches: 14, Indels: 15
0.86 0.07 0.07
Matches are distributed among these distances:
166 72 0.39
168 3 0.02
169 34 0.18
170 1 0.01
171 39 0.21
172 2 0.01
174 33 0.18
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.30
Consensus pattern (167 bp):
TTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCATCTTCAATCTGCTCCACTACTGCTTA
GGGAGACAAGATCGTAATTGACCTGCTACCCTACAGCTTAGGGGATTAAGGCGAGTCATATCGAT
CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAA
Found at i:8532029 original size:1 final size:1
Alignment explanation
Indices: 8532019--8532091 Score: 56
Period size: 1 Copynumber: 73.0 Consensus size: 1
8532009 GGCCTATCCA
* * * * * * * * * *
8532019 TTTTTCTTTTTTTCTTTTTTCTCTTTTTTCTTTTTTCTTTTTTTCTTTTTTTTCTTTTTTTTCTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
8532084 TTTTTTTT
1 TTTTTTTT
8532092 AAATAGAAGT
Statistics
Matches: 52, Mismatches: 20, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 52 1.00
ACGTcount: A:0.00, C:0.12, G:0.01, T:0.86
Consensus pattern (1 bp):
T
Found at i:8532037 original size:9 final size:8
Alignment explanation
Indices: 8532019--8532089 Score: 92
Period size: 9 Copynumber: 8.6 Consensus size: 8
8532009 GGCCTATCCA
8532019 TTTTTCTT
1 TTTTTCTT
8532027 TTTTTC-T
1 TTTTTCTT
8532034 TTTTTCTCT
1 TTTTTCT-T
8532043 TTTTTC-T
1 TTTTTCTT
8532050 TTTTTCTT
1 TTTTTCTT
8532058 TTTTTCTTT
1 TTTTTC-TT
8532067 TTTTTCTTT
1 TTTTTC-TT
8532076 TTTTTCTGT
1 TTTTTCT-T
8532085 TTTTT
1 TTTTT
8532090 TTAAATAGAA
Statistics
Matches: 58, Mismatches: 0, Indels: 9
0.87 0.00 0.13
Matches are distributed among these distances:
7 14 0.24
8 14 0.24
9 30 0.52
ACGTcount: A:0.00, C:0.13, G:0.01, T:0.86
Consensus pattern (8 bp):
TTTTTCTT
Found at i:8532057 original size:31 final size:31
Alignment explanation
Indices: 8532019--8532078 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
8532009 GGCCTATCCA
8532019 TTTTTCTTTTTTTCTTTTTTCTCTTTTTTCT
1 TTTTTCTTTTTTTCTTTTTTCTCTTTTTTCT
*
8532050 TTTTTCTTTTTTTCTTTTTTTTCTTTTTT
1 TTTTTCTTTTTTTCTTTTTTCTCTTTTTT
8532079 TTCTGTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (31 bp):
TTTTTCTTTTTTTCTTTTTTCTCTTTTTTCT
Found at i:8532091 original size:24 final size:24
Alignment explanation
Indices: 8532019--8532091 Score: 89
Period size: 24 Copynumber: 3.1 Consensus size: 24
8532009 GGCCTATCCA
*
8532019 TTTTTC-TTTTTTTCTTTTTTCTCT
1 TTTTTCTTTTTTTTC-TTTTTCTTT
8532043 TTTTTCTTTTTTCTT-TTTTTCTTT
1 TTTTTCTTTTTT-TTCTTTTTCTTT
*
8532067 TTTTTCTTTTTTTTCTGTTT-TTT
1 TTTTTCTTTTTTTTCTTTTTCTTT
8532090 TT
1 TT
8532092 AAATAGAAGT
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
23 7 0.16
24 30 0.68
25 5 0.11
26 2 0.05
ACGTcount: A:0.00, C:0.12, G:0.01, T:0.86
Consensus pattern (24 bp):
TTTTTCTTTTTTTTCTTTTTCTTT
Found at i:8537860 original size:17 final size:18
Alignment explanation
Indices: 8537807--8537913 Score: 146
Period size: 18 Copynumber: 5.9 Consensus size: 18
8537797 AATCATATCT
*
8537807 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
8537826 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
8537844 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
8537861 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
*
8537879 TCTAAGATTG-TATTATA
1 TCTAAGATTGCTATCATA
8537896 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
8537914 TGAAGATTAT
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
17 31 0.40
18 32 0.41
19 15 0.19
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.39
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:8537865 original size:35 final size:35
Alignment explanation
Indices: 8537807--8537913 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
8537797 AATCATATCT
8537807 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
8537844 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
8537879 TCTAAGATTGTATTATATCTAAGATTGCATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
8537914 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 53 0.78
36 5 0.07
37 10 0.15
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.39
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:8539219 original size:30 final size:30
Alignment explanation
Indices: 8539164--8539220 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
8539154 ACTAAAATAA
* *
8539164 GTTGCTCACACAAGTTGTCAATATATCAGG
1 GTTGCTCACACAAGCTGACAATATATCAGG
*
8539194 GTTGCTCACACAAGCTGACAGTATATC
1 GTTGCTCACACAAGCTGACAATATATC
8539221 GAGCTTACCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (30 bp):
GTTGCTCACACAAGCTGACAATATATCAGG
Found at i:8539591 original size:18 final size:18
Alignment explanation
Indices: 8539565--8539611 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
8539555 CTTCTGCTCA
*
8539565 ATTCTAACATATAAATAG
1 ATTCAAACATATAAATAG
8539583 ATTCAAACATATAAATAG
1 ATTCAAACATATAAATAG
8539601 ATTCAAACATA
1 ATTCAAACATA
8539612 ATTCATACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.53, C:0.13, G:0.04, T:0.30
Consensus pattern (18 bp):
ATTCAAACATATAAATAG
Found at i:8542569 original size:17 final size:17
Alignment explanation
Indices: 8542547--8542595 Score: 80
Period size: 17 Copynumber: 2.9 Consensus size: 17
8542537 ATTGAAAAAT
8542547 GAGAATTTTTAAAACAC
1 GAGAATTTTTAAAACAC
*
8542564 GAGAATTTTGAAAACAC
1 GAGAATTTTTAAAACAC
*
8542581 GAGAATTTTTGAAAC
1 GAGAATTTTTAAAAC
8542596 CTGAATTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.45, C:0.10, G:0.16, T:0.29
Consensus pattern (17 bp):
GAGAATTTTTAAAACAC
Found at i:8543308 original size:3 final size:3
Alignment explanation
Indices: 8543294--8543327 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
8543284 ACTAATTTAA
*
8543294 AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
8543328 CAAACCAACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8544160 original size:30 final size:30
Alignment explanation
Indices: 8544126--8544220 Score: 111
Period size: 30 Copynumber: 3.2 Consensus size: 30
8544116 GTTAAAATAC
* ** *
8544126 AATTTAATGAAAGTTTAGGGGTTTAAGTGA
1 AATTTAAAGAAAGTTTAGGGGTCAAAATGA
*
8544156 AATTTAAAGAAAGTTTAAGGGTCAAAATGA
1 AATTTAAAGAAAGTTTAGGGGTCAAAATGA
* *
8544186 AATTT-AGGAAAAGTTTAGGGGTCAAAATGT
1 AATTTAAAG-AAAGTTTAGGGGTCAAAATGA
8544216 AATTT
1 AATTT
8544221 TATTTTTAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 2 0.04
30 54 0.96
ACGTcount: A:0.42, C:0.02, G:0.23, T:0.33
Consensus pattern (30 bp):
AATTTAAAGAAAGTTTAGGGGTCAAAATGA
Found at i:8544234 original size:13 final size:14
Alignment explanation
Indices: 8544216--8544248 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
8544206 GTCAAAATGT
8544216 AATTTTATTTTT-A
1 AATTTTATTTTTGA
*
8544229 AATTTTTTTTTTGA
1 AATTTTATTTTTGA
8544243 AATTTT
1 AATTTT
8544249 GAAAGTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (14 bp):
AATTTTATTTTTGA
Found at i:8544714 original size:56 final size:54
Alignment explanation
Indices: 8544490--8544816 Score: 502
Period size: 54 Copynumber: 6.1 Consensus size: 54
8544480 CACGTGAGCC
* *
8544490 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AA
*
8544545 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAG--A--AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
*
8544595 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
* * *
8544649 AAGGCTCAACTCACTTCTCGCAATATGAGTTGGTTTTTTTGAAAAACAGAAACTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTTTGAAAAACAGAAATTAA
8544705 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
*
8544759 AAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-AA
8544814 AAG
1 AAG
8544817 TAGAAATTGA
Statistics
Matches: 252, Mismatches: 12, Indels: 16
0.90 0.04 0.06
Matches are distributed among these distances:
50 47 0.19
52 1 0.00
54 103 0.41
55 45 0.18
56 56 0.22
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (54 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
Found at i:8544742 original size:110 final size:106
Alignment explanation
Indices: 8544490--8544808 Score: 500
Period size: 110 Copynumber: 3.0 Consensus size: 106
8544480 CACGTGAGCC
* *
8544490 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAAAAGGCTCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AAAAGGCTCAA
*
8544554 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAG--AAA
64 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAAAA
*
8544595 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAACAGAAATTAAAAGGCTCAACT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
* *
8544660 CACTTCTCGCAATATGAGTTGGTTTTTTTGAAAAACAGAAACTAA
66 CACCTCTCGCAATATGAGTT-G-ATTTTTGAAAAACAGAAA--AA
8544705 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
*
8544770 CACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAA
66 CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
8544809 TTGAAAAGTA
Statistics
Matches: 197, Mismatches: 10, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
104 32 0.16
105 38 0.19
106 24 0.12
108 18 0.09
109 1 0.01
110 84 0.43
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (106 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAAAA
Found at i:8544814 original size:14 final size:14
Alignment explanation
Indices: 8544795--8544829 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8544785 GAGTTGATTT
8544795 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
**
8544809 TTGAAAAGTAGAAA
1 TTGAAAAACAGAAA
8544823 TTGAAAA
1 TTGAAAA
8544830 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.03, G:0.17, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:8545015 original size:87 final size:85
Alignment explanation
Indices: 8544760--8545327 Score: 546
Period size: 87 Copynumber: 6.4 Consensus size: 85
8544750 AGAAATTAAA
* * *
8544760 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGA-AAAGTAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAGCA-AAATTGAGAAA-CAGAAAT
8544824 TGAAAATACCTCAGCGT-GCCCTG
63 TGAAAATACCTCAGCGTGGCCC-G
* * * *
8544847 AGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTTTTTTTGAAACA-CAGAAATTAAAAAAAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA------TTTTGAAA-AGCA-AAATT-GAGAAAC
* *
8544911 AGAATTTGAAAAGACCTCAGCGTGTGGCCCG
57 AGAAATTGAAAATACCTCAGC--GTGGCCCG
* *
8544942 AGACTCAACTCACCTCTCGCAATATGAGTTGA-TTTGAAAAGCAGAATT-AGTAAAGCAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAGCAAAATTGAG-AAA-CAGAAATT
*
8545005 GAAAATACCTCAGCGT-GCCTTG
64 GAAAATACCTCAGCGTGGCC-CG
* * *
8545027 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAGATTGAAAAAAACATAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAGCA-AAATTG--AGAAACAGAAA
8545092 TTGAAAATACCTCAGCATGTGAG-CCG
62 TTGAAAATACCTCAGC--GTG-GCCCG
8545118 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAA-CATAAATTGAGAAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGA-AAAGCA-AAATTGAGAAACAGAAAT
* *
8545182 TAAAAATACCTCAGCGTGCCCCG
63 TGAAAATACCTCAGCGTGGCCCG
*
8545205 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGA-AGAACAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTGAAAAGCA-AAATTGAGA-AACAGAA
* * **
8545269 ATGGAAAACACCTCAGCGT--CTTG
61 ATTGAAAATACCTCAGCGTGGCCCG
* *
8545292 AGGTTCAACTCACCTCTCGTAATATGAGTTGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
8545328 TTGAAAGACA
Statistics
Matches: 416, Mismatches: 34, Indels: 65
0.81 0.07 0.13
Matches are distributed among these distances:
84 7 0.02
85 35 0.08
86 3 0.01
87 135 0.32
88 16 0.04
89 84 0.20
90 3 0.01
91 51 0.12
92 21 0.05
93 22 0.05
94 3 0.01
95 32 0.08
96 4 0.01
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (85 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAGCAAAATTGAGAAACAGAAATTGA
AAATACCTCAGCGTGGCCCG
Found at i:8545098 original size:15 final size:16
Alignment explanation
Indices: 8545065--8545098 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8545055 TTGATTTTTG
* *
8545065 AAAAGCATAGATTGAA
1 AAAAACATAAATTGAA
8545081 AAAAACATAAATTGAA
1 AAAAACATAAATTGAA
8545097 AA
1 AA
8545099 TACCTCAGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.18
Consensus pattern (16 bp):
AAAAACATAAATTGAA
Found at i:8545148 original size:358 final size:336
Alignment explanation
Indices: 8544760--8546005 Score: 944
Period size: 358 Copynumber: 3.8 Consensus size: 336
8544750 AGAAATTAAA
*
8544760 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGA-AAAGTAGAAAT
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAGAAA-CAGAAAT
* * *
8544824 TGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTTTTTTT
65 TAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA---TTTTTTT
* * * *
8544889 GAAACACAGAAATTAAAAAAACAGAATTTGAAAAGACCTCAGCGTGTGGCCCGAGACTCAACTCA
127 GAAAAACAGAAATT-AAAAAACAGAAATGGAAAACACCTCAGC--GT--CCCGAGACTCAACTCA
* *
8544954 CCTCTCGCAATATGAGTTGATTTGAAAAGCAGAATTAGTAAAG-CAGAAATTGAAAATACCTCAG
187 CCTCTCGCAATATGAGTTGATTT-----------TTAG-AAAGACAAAAATTGAAAATACCTCAA
*
8545018 CGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAGATTGAAAA
240 CGTGCCTTGAGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTGAAAA--ATAAATTGAAAA
8545083 AAACATAAATTGAAAATACCTCAGCATGTGAGCCG
302 AAACATAAATTGAAAATACCTCAGCATGTGAGCCG
* * *
8545118 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACATAAATTGAGAAACAGAAATT
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAGAAACAGAAATT
*
8545183 AAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
66 AAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA
* * ** ** *
8545248 AACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGTA
131 AACAGAAATTAAAAAACAGAAATGGAAAACACCTCAGCGTCCCGAGACTCAACTCACCTCTCGCA
* *
8545313 ATATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
196 ATATGAGTTGATTTTTAGAAAGACAAAAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCA
8545378 CTCTCGCAATATGAGTTGA---TT------T---TTG---AAAA-ATAAATTGAAAATACCTCAG
261 CTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTGAAAAAAACATAAATTGAAAATACCTCAG
*
8545427 C--GTG-CCCTG
326 CATGTGAGCC-G
* * *
8545436 AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT------------TTGAAAAACAGAAATT
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAGAAACAGAAATT
* * * ** * * *
8545489 GAAAATACCTCAACGTGTCTTGAGGCTCAACTTACCTCTCGCAATATGAGTTGA--TTTTTGACA
66 AAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA
* * * *
8545552 AACAAAAATT--------GAAAT------TACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCG
131 AACAGAAATTAAAAAACAGAAATGGAAAACACCTCAGC--GTCCCGAGACTCAACTCACCTCTCG
* * * * * ****
8545603 TAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAACACCTCAACGTGTGAAACGAGGCTCA
194 CAATATGAGTTGA-TTTTTAGAAAGACAAAAATTGAAAATACCTCAAC--GTGCCTTGAGGCTCA
* **
8545668 ACTCACCTCTCGCAATATGAGTTGATTTTT------T---TT-----TATGATAAATTGAAAATA
256 ACTCA-CTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTGAAAAAAACATAAATTGAAAATA
*
8545719 CCTCA--ATGTGA-CTTG
320 CCTCAGCATGTGAGC-CG
* * * *
8545734 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAA-ATAAATT-AAAACACAAAAAT
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAGAA-ACAGAAAT
* * * *
8545796 TGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTAAA
65 TAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAA
* * * * * ** *
8545859 AAACATAAATT---GAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
130 AAACAGAAATTAAAAAACAGAAATGGAAAACACCTC-A-GCGTCCCGAGACTCAACTCACCTCTC
* * *
8545921 GCAATATGAGTTGATTTTT-GAAA-A-ATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTC-A-
193 GCAATATGAGTTGATTTTTAGAAAGACAAAAATTGAAAATACCTCAACGTGCCTTGAGGCTCAAC
* *
8545981 -C-CTCTGGCAATATGAATTGATTTTT
258 TCACTCTCGCAATATGAGTTGATTTTT
8546006 TTGAAAAACA
Statistics
Matches: 777, Mismatches: 70, Indels: 132
0.79 0.07 0.13
Matches are distributed among these distances:
290 8 0.01
292 36 0.05
293 31 0.04
295 16 0.02
296 24 0.03
297 1 0.00
298 60 0.08
299 5 0.01
304 17 0.02
306 63 0.08
307 4 0.01
308 96 0.12
310 1 0.00
312 1 0.00
313 15 0.02
315 18 0.02
316 1 0.00
317 6 0.01
318 45 0.06
319 42 0.05
320 22 0.03
321 5 0.01
324 3 0.00
327 1 0.00
335 2 0.00
338 23 0.03
339 42 0.05
350 34 0.04
352 2 0.00
354 23 0.03
355 20 0.03
358 107 0.14
359 3 0.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (336 bp):
AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAGAAACAGAAATT
AAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA
AACAGAAATTAAAAAACAGAAATGGAAAACACCTCAGCGTCCCGAGACTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTAGAAAGACAAAAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCA
CTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTGAAAAAAACATAAATTGAAAATACCTCAG
CATGTGAGCCG
Found at i:8545265 original size:14 final size:14
Alignment explanation
Indices: 8545242--8545276 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8545232 GTTGATTTTT
8545242 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
8545256 TTGAAGAACAGAAA
1 TTGAAAAACAGAAA
*
8545270 TGGAAAA
1 TTGAAAA
8545277 CACCTCAGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.60, C:0.06, G:0.20, T:0.14
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:8545514 original size:75 final size:75
Alignment explanation
Indices: 8545256--8545770 Score: 640
Period size: 73 Copynumber: 7.0 Consensus size: 75
8545246 AAAACAGAAA
* * * * * *
8545256 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
8545319 GTTGA-TTTT
66 GTTGATTTTT
* *
8545328 TTGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-CTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
8545392 GTTGA--TTT
66 GTTGATTTTT
* * * * *
8545400 TTG-AAAA-ATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATAA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
8545463 GTTGATTTTT
66 GTTGATTTTT
*
8545473 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTTACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
8545538 GTTGA--TTT
66 GTTGATTTTT
* * * * * * *
8545546 TTGACAAACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
8545611 GTTGATTTTT
66 GTTGATTTTT
* ***
8545621 TTGAAAAACAGAAATTGAAAACACCTCAACGTGTGAAACGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCACCTCTCGCAATAT
8545686 GAGTTGATTTTT
64 GAGTTGATTTTT
** ** * * *
8545698 TT--TTATGATAAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
8545761 GTTGATTTTT
66 GTTGATTTTT
8545771 GAAAAATAAA
Statistics
Matches: 383, Mismatches: 49, Indels: 21
0.85 0.11 0.05
Matches are distributed among these distances:
70 37 0.10
71 21 0.05
72 28 0.07
73 128 0.33
74 22 0.06
75 108 0.28
77 39 0.10
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:8545829 original size:235 final size:221
Alignment explanation
Indices: 8545267--8546604 Score: 1143
Period size: 225 Copynumber: 6.0 Consensus size: 221
8545257 TGAAGAACAG
* * * * *
8545267 AAATGGAAAACACCTCAGCGT--CTTGAGGTTCAACTCACCTCTCGTAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * *
8545329 TGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-CTCTCGCAATATGAG
66 TGAAAAACAAAAATTG-AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * **
8545393 TTGA--TTTTTG-AAAA-ATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTC
130 TTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTAC-GAGGCTCAACTCACCTCTC
* ** * *
8545454 GCAATATAAGTTGATTTTTTTGAAAAACAG
194 GCAATATGAGTTGATTTTTTT--TTAAGAT
* *
8545484 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTTACCTCTCGCAATATGAGTTGA--TTTT
1 AAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * *
8545547 TGACAAACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGTAATATGAG
66 TGAAAAACAAAAATTGAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
8545612 TTGATTTTTTTGAAAAACAGAAATTGAAAACACCTCAACGTGTGAAACGAGGCTCAACTCACCTC
130 TTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGT---ACGAGGCTCAACTCACCTC
*
8545677 TCGCAATATGAGTTGATTTTTTTTTATGAT
192 TCGCAATATGAGTTGATTTTTTTTTAAGAT
*
8545707 AAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-
* * *
8545772 AAAAATAAATTAAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTC
65 -----T---TGAAAA-ACAAAAATTGA-AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
*
8545837 GCAATATGAGTTGATTTTTAAAAAACAT-AAATTGAACAGAAATTGAAAATACCTCAACGTGT-C
120 GCAATATGAGTTGATTTTT-------TTGAAA---AACAGAAATTGAAAATACCTCAACGTGTAC
** *
8545900 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAAT
175 --GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAGAT
* * * * *
8545947 AAATTGAAAATACCTCAGCGTGCCCTGAGG-----CTCACCTCTGGCAATATGAATTGATTTTTT
1 AAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * * *
8546007 TGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAG
66 TGAAAAACAAAAATTG-AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
8546072 TTGA--TTTTTGACAAAA-A-AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
130 TTGATTTTTTTGA-AAAACAGAAATTGAAAATACCTCAACGTGTAC-GAGGCTCAACTCACCTCT
*
8546133 TGCAATATGAGTTGATTTTTTTTTGAAAGAT
193 CGCAATATGAGTTGATTTTTTTTT--AAGAT
* *
8546164 AGAAATTGAATATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 --AAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
* * *
8546229 TTTTTAAAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC-A-AT
63 TTTTGAAAAACAAAAATTGAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
8546292 --G-TGA-------G-----CAGAAATTGAAAATACCTCAACGTGT-CTTGAGGCTCAACTCACC
127 GAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTAC--GAGGCTCAACTCACC
*
8546341 TCTCGCAATATGAGTTGATTTTTGAAAAATAAATTGACAAACGA-
190 TCTCGCAATATGAGTTGATTTTT------T---TT---TAA-GAT
* *
8546385 AAATTGAAAATACCTCAACGT--CTTGAGTCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-------
* * * * *
8546448 TTATTCTTTTTTTGAAAGACAGAAATTGAAAATATCTCAACGTGTCTTGAGGCTCAACTCACCTC
59 --A---TTTTTTTGAAAAACAAAAATTG-AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* * **
8546513 TCGCAATATGAGTTGA--TTTTTG-AAAA-ATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTC
118 TCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTAC-GAGGCTC
* *
8546574 AACTCACCTTTTGCAATATGAGTTGATTTTT
182 AACTCACCTCTCGCAATATGAGTTGATTTTT
8546605 GACAAACAGA
Statistics
Matches: 937, Mismatches: 88, Indels: 168
0.79 0.07 0.14
Matches are distributed among these distances:
210 2 0.00
211 59 0.06
213 54 0.06
214 2 0.00
215 8 0.01
216 1 0.00
217 60 0.06
218 46 0.05
219 97 0.10
220 5 0.01
221 9 0.01
222 6 0.01
223 84 0.09
224 26 0.03
225 151 0.16
226 8 0.01
228 53 0.06
229 5 0.01
230 2 0.00
231 1 0.00
232 1 0.00
233 3 0.00
234 4 0.00
235 88 0.09
236 2 0.00
238 1 0.00
240 35 0.04
241 62 0.07
242 35 0.04
244 27 0.03
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (221 bp):
AAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TGAAAAACAAAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTACGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTTTTTAAGAT
Found at i:8545850 original size:85 final size:84
Alignment explanation
Indices: 8545707--8545956 Score: 342
Period size: 84 Copynumber: 3.0 Consensus size: 84
8545697 TTTTTATGAT
* * **
8545707 AAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
8545772 AAAAATAAATTAAAACACAA
66 AAAAATAAATTAAAA-ACAA
* *
8545792 AAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTA
1 AAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-
* * *
8545857 AAAAACATAAATT--GAACAG
65 GAAAA-ATAAATTAAAAACAA
* **
8545876 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
8545941 AAAAATAAATTGAAAA
66 AAAAATAAATTAAAAA
8545957 TACCTCAGCG
Statistics
Matches: 145, Mismatches: 16, Indels: 9
0.85 0.09 0.05
Matches are distributed among these distances:
82 7 0.05
83 4 0.03
84 64 0.44
85 59 0.41
86 4 0.03
87 7 0.05
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (84 bp):
AAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAAATAAATTAAAAACAA
Found at i:8546329 original size:58 final size:58
Alignment explanation
Indices: 8546239--8546354 Score: 189
Period size: 58 Copynumber: 2.0 Consensus size: 58
8546229 TTTTTAAAAA
* *
8546239 CAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATGTGAG
1 CAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
8546297 CAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 CAGAAATT-AAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
8546355 TTGATTTTTG
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
58 50 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (58 bp):
CAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
Found at i:8546536 original size:73 final size:72
Alignment explanation
Indices: 8546456--8546622 Score: 239
Period size: 71 Copynumber: 2.3 Consensus size: 72
8546446 TTTTATTCTT
* * *
8546456 TTTTTGAAAGACAGAAATTGAAAATATCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
1 TTTTTGAAA-ACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
8546521 TGAGTTGA
65 TGAGTTGA
* * * *
8546529 TTTTTGAAAA-ATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTTTTGCAATAT
1 TTTTTGAAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
8546593 GAGTTGA
66 GAGTTGA
8546600 TTTTTGACAAACAGAAATT-AAAA
1 TTTTTGA-AAACAGAAATTGAAAA
8546623 CATCAAAATA
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
71 61 0.73
72 8 0.10
73 15 0.18
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (72 bp):
TTTTTGAAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGA
Found at i:8546549 original size:85 final size:84
Alignment explanation
Indices: 8546297--8546550 Score: 343
Period size: 85 Copynumber: 3.0 Consensus size: 84
8546287 GCAATGTGAG
8546297 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
8546362 TTGAAAAATAAATTGACAAA
66 TTGAAAAATAAATTGA-AAA
* *
8546382 C-GAAAATTGAAAATACCTCAAC--GTCTTGAGTCTCAACTCACCTCTCACAATATGAGTTGATT
1 CAG-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
* **** ***
8546444 TTTTTTATTCTTTTTTTGAAAGA
63 TTTTTGAAAAATAAATTGAAA-A
*
8546467 CAGAAATTGAAAATATCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
8546532 TTGAAAAATAAATTGAAAA
66 TTGAAAAATAAATTGAAAA
8546551 TACCTCAGCG
Statistics
Matches: 141, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
83 36 0.26
84 4 0.03
85 64 0.45
86 1 0.01
87 36 0.26
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.32
Consensus pattern (84 bp):
CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTGAAAAATAAATTGAAAA
Found at i:8548224 original size:14 final size:14
Alignment explanation
Indices: 8548201--8548238 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
8548191 GACCTCTCCA
8548201 TTTTCTTTTCTTTCT
1 TTTTC-TTTCTTTCT
8548216 TTTTCTTTCTTTCT
1 TTTTCTTTCTTTCT
8548230 TTTTGCTTT
1 TTTT-CTTT
8548239 TGAATGAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 13 0.59
15 9 0.41
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (14 bp):
TTTTCTTTCTTTCT
Found at i:8548815 original size:14 final size:14
Alignment explanation
Indices: 8548796--8548830 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
8548786 TTGATCTCTC
8548796 TTTTTTTGTTTTTT
1 TTTTTTTGTTTTTT
8548810 TTTTTTTGTTTTTT
1 TTTTTTTGTTTTTT
*
8548824 TTCTTTT
1 TTTTTTT
8548831 CATGACTGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.00, C:0.03, G:0.06, T:0.91
Consensus pattern (14 bp):
TTTTTTTGTTTTTT
Found at i:8552481 original size:17 final size:17
Alignment explanation
Indices: 8552459--8552504 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
8552449 GAAAAATGAG
8552459 AATTTTTAAAACACAAA
1 AATTTTTAAAACACAAA
* * *
8552476 AATTTTGAAAACACGAG
1 AATTTTTAAAACACAAA
*
8552493 AATTTTTTAAAC
1 AATTTTTAAAAC
8552505 CTGAATTTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.50, C:0.11, G:0.07, T:0.33
Consensus pattern (17 bp):
AATTTTTAAAACACAAA
Found at i:8554045 original size:30 final size:29
Alignment explanation
Indices: 8553989--8554105 Score: 121
Period size: 30 Copynumber: 4.0 Consensus size: 29
8553979 TGTAATTTTT
* * *
8553989 AGAAAATTT-AGGGTTAAAATGCAATTTA
1 AGAAAGTTTAAGGGTCAAAATGAAATTTA
** *
8554017 ATGAAAGTTTAAGGGTTTAAGTGAAATTTAA
1 A-GAAAGTTTAAGGGTCAAAATGAAATTT-A
8554048 AGAAAGTTTAAGGGTCAAAATGAAATTTA
1 AGAAAGTTTAAGGGTCAAAATGAAATTTA
*
8554077 AGAAAAGTTT-AGGAGTCAAAATGCAATTT
1 AG-AAAGTTTAAGG-GTCAAAATGAAATTT
8554106 TTATTTTTAA
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
28 1 0.01
29 13 0.17
30 60 0.79
31 2 0.03
ACGTcount: A:0.45, C:0.03, G:0.21, T:0.31
Consensus pattern (29 bp):
AGAAAGTTTAAGGGTCAAAATGAAATTTA
Found at i:8554136 original size:14 final size:15
Alignment explanation
Indices: 8554101--8554136 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
8554091 GTCAAAATGC
8554101 AATTTTTATTTTTAA
1 AATTTTTATTTTTAA
* *
8554116 AATTTTTTTTTTTGA
1 AATTTTTATTTTTAA
8554131 AATTTT
1 AATTTT
8554137 GAAAATTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (15 bp):
AATTTTTATTTTTAA
Found at i:8562435 original size:26 final size:26
Alignment explanation
Indices: 8562398--8562455 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
8562388 TGATACAAAT
8562398 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
8562424 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
8562450 TGATAA
1 TGATAA
8562456 GAATTTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:8565863 original size:34 final size:32
Alignment explanation
Indices: 8565800--8565864 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
8565790 AATGACTTTT
* * *
8565800 TTTAAAATATATATATAGTACATATTTTATTG
1 TTTAAAATAAATATAAAGTACAAATTTTATTG
*
8565832 TTTAAAATAAATATAAATGTATAAATATTTATT
1 TTTAAAATAAATATAAA-GTACAAAT-TTTATT
8565865 TTTTTAAAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 15 0.56
33 6 0.22
34 6 0.22
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.48
Consensus pattern (32 bp):
TTTAAAATAAATATAAAGTACAAATTTTATTG
Found at i:8565970 original size:2 final size:2
Alignment explanation
Indices: 8565963--8566015 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
8565953 CGAACAAGTA
8565963 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8566005 AT AT AT AT AT A
1 AT AT AT AT AT A
8566016 AAAACTTAAG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8575223 original size:15 final size:15
Alignment explanation
Indices: 8575203--8575232 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8575193 AAATTTTAAT
*
8575203 TTTTTATAGTTTGTA
1 TTTTTATAATTTGTA
8575218 TTTTTATAATTTGTA
1 TTTTTATAATTTGTA
8575233 AAGAATTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (15 bp):
TTTTTATAATTTGTA
Found at i:8581368 original size:29 final size:29
Alignment explanation
Indices: 8581335--8581417 Score: 105
Period size: 29 Copynumber: 2.9 Consensus size: 29
8581325 TTTTTTACAG
*
8581335 TAATTCTA-AAAAAAATTTAAAAATAAATA
1 TAATT-TATAAAAAAATTAAAAAATAAATA
* *
8581364 TAATTTATTAAAATATTAAAAAATAAATA
1 TAATTTATAAAAAAATTAAAAAATAAATA
* *
8581393 TAATTTATTAAAATATTAAAAAATA
1 TAATTTATAAAAAAATTAAAAAATA
8581418 TGTTAACTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
28 2 0.04
29 48 0.96
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (29 bp):
TAATTTATAAAAAAATTAAAAAATAAATA
Found at i:8581379 original size:15 final size:15
Alignment explanation
Indices: 8581359--8581408 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
8581349 ATTTAAAAAT
8581359 AAATATAATTTATTA
1 AAATATAATTTATTA
** *
8581374 AAATATTAA-AAAAT-
1 AAATA-TAATTTATTA
8581388 AAATATAATTTATTA
1 AAATATAATTTATTA
8581403 AAATAT
1 AAATAT
8581409 TAAAAAATAT
Statistics
Matches: 26, Mismatches: 6, Indels: 6
0.68 0.16 0.16
Matches are distributed among these distances:
13 3 0.12
14 7 0.27
15 13 0.50
16 3 0.12
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
AAATATAATTTATTA
Found at i:8581437 original size:30 final size:29
Alignment explanation
Indices: 8581344--8581417 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
8581334 GTAATTCTAA
* *
8581344 AAAAAATTTAAAAATAAATATAATTTATT
1 AAAATATTAAAAAATAAATATAATTTATT
8581373 AAAATATTAAAAAATAAATATAATTTATT
1 AAAATATTAAAAAATAAATATAATTTATT
8581402 AAAATATTAAAAAATA
1 AAAATATTAAAAAATA
8581418 TGTTAACTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (29 bp):
AAAATATTAAAAAATAAATATAATTTATT
Found at i:8585691 original size:17 final size:18
Alignment explanation
Indices: 8585657--8585694 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
8585647 TAATTCAATT
*
8585657 AAATAAAATATTTTTAAA
1 AAATAAAATATATTTAAA
8585675 AAATAAAA-ATATTTAAA
1 AAATAAAATATATTTAAA
8585692 AAA
1 AAA
8585695 ATTGATTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AAATAAAATATATTTAAA
Found at i:8585694 original size:19 final size:18
Alignment explanation
Indices: 8585657--8585695 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
8585647 TAATTCAATT
**
8585657 AAATAAAATATTTTTAAA
1 AAATAAAATATTTAAAAA
8585675 AAATAAAAATATTTAAAAA
1 AAAT-AAAATATTTAAAAA
8585694 AA
1 AA
8585696 TTGATTTAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AAATAAAATATTTAAAAA
Found at i:8585695 original size:18 final size:18
Alignment explanation
Indices: 8585657--8585696 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
8585647 TAATTCAATT
*
8585657 AAATAAAATATTTTTAAA
1 AAATAAAATATTTTAAAA
8585675 AAATAAAA-ATATTTAAAA
1 AAATAAAATAT-TTTAAAA
8585693 AAAT
1 AAAT
8585697 TGATTTAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 2 0.10
18 18 0.90
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAATAAAATATTTTAAAA
Found at i:8586162 original size:9 final size:9
Alignment explanation
Indices: 8586148--8586541 Score: 158
Period size: 10 Copynumber: 41.6 Consensus size: 9
8586138 TTATTAGGTT
*
8586148 TTTTTATCA
1 TTTTTATAA
8586157 TTTTTATAA
1 TTTTTATAA
*
8586166 TATTTATAA
1 TTTTTATAA
*
8586175 GTTTTTATGA
1 -TTTTTATAA
8586185 TTTTTAATAA
1 TTTTT-ATAA
8586195 TTTTTTATAA
1 -TTTTTATAA
*
8586205 TATTTATAA
1 TTTTTATAA
**
8586214 GTTTTGATATTT
1 -TTTT--TATAA
8586226 TTTTTATAA
1 TTTTTATAA
*
8586235 TTTTTATCAC
1 TTTTTAT-AA
* *
8586245 GTTATATCAA
1 TTTTTAT-AA
* *
8586255 CTTTAAT-A
1 TTTTTATAA
*
8586263 TTTTTAAAA
1 TTTTTATAA
8586272 TTTTTAATAA
1 TTTTT-ATAA
8586282 -TTTTATAA
1 TTTTTATAA
*
8586290 TTTTTATGA
1 TTTTTATAA
8586299 TATTTTATAA
1 T-TTTTATAA
*
8586309 TTTTTATGAC
1 TTTTTAT-AA
*
8586319 TTTTTATATGTT
1 TTTTTATA---A
*
8586331 TTTTTAAGAA
1 TTTTT-ATAA
8586341 TTTTTATACA
1 TTTTTATA-A
8586351 TTTTTATAAA
1 TTTTTAT-AA
* *
8586361 ATTTTAAATA
1 TTTTTATA-A
8586371 TGTTTTATTAA
1 T-TTTTA-TAA
*
8586382 TTTTATAAAA
1 TTTT-TATAA
***
8586392 AAATTATAA
1 TTTTTATAA
**
8586401 TTTATTAGCA
1 TTT-TTATAA
8586411 TTTATT-TAA
1 TTT-TTATAA
8586420 -TTTTATATA
1 TTTTTATA-A
8586429 TTTTTAT--
1 TTTTTATAA
8586436 TTTTTATAA
1 TTTTTATAA
*
8586445 GTTTATATCAA
1 -TTTTTAT-AA
* *
8586456 CTTTAATAA
1 TTTTTATAA
8586465 TTTTT-TAA
1 TTTTTATAA
8586473 TATTTT-TAA
1 T-TTTTATAA
*
8586482 TATTTAT-A
1 TTTTTATAA
8586490 TTTTTATAA
1 TTTTTATAA
* **
8586499 CTTTTACGA
1 TTTTTATAA
8586508 TATTTTATAA
1 T-TTTTATAA
* *
8586518 TTTTAATGAT
1 TTTTTAT-AA
*
8586528 TTTTTTTAA
1 TTTTTATAA
8586537 TTTTT
1 TTTTT
8586542 TGTATTTTGA
Statistics
Matches: 286, Mismatches: 64, Indels: 70
0.68 0.15 0.17
Matches are distributed among these distances:
7 9 0.03
8 27 0.09
9 105 0.37
10 113 0.40
11 21 0.07
12 9 0.03
13 2 0.01
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.60
Consensus pattern (9 bp):
TTTTTATAA
Found at i:8586181 original size:19 final size:19
Alignment explanation
Indices: 8586157--8586218 Score: 88
Period size: 19 Copynumber: 3.2 Consensus size: 19
8586147 TTTTTTATCA
8586157 TTTTTATAATATTTATAAG
1 TTTTTATAATATTTATAAG
* * *
8586176 TTTTTATGATTTTTAATAAT
1 TTTTTATAATATTT-ATAAG
8586196 TTTTTATAATATTTATAAG
1 TTTTTATAATATTTATAAG
8586215 TTTT
1 TTTT
8586219 GATATTTTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
19 20 0.56
20 16 0.44
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (19 bp):
TTTTTATAATATTTATAAG
Found at i:8586189 original size:39 final size:39
Alignment explanation
Indices: 8586146--8586241 Score: 133
Period size: 39 Copynumber: 2.5 Consensus size: 39
8586136 ACTTATTAGG
*
8586146 TTTTTTTATCATTTTTATAATATTTATAAGTTTT--TAT
1 TTTTTTTATAATTTTTATAATATTTATAAGTTTTGATAT
* *
8586183 GATTTTTAATAATTTTTTATAATATTTATAAGTTTTGATAT
1 -TTTTTTTATAA-TTTTTATAATATTTATAAGTTTTGATAT
8586224 TTTTTTTATAATTTTTAT
1 TTTTTTTATAATTTTTAT
8586242 CACGTTATAT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
38 8 0.16
39 30 0.60
40 9 0.18
41 3 0.06
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (39 bp):
TTTTTTTATAATTTTTATAATATTTATAAGTTTTGATAT
Found at i:8586279 original size:18 final size:18
Alignment explanation
Indices: 8586148--8586314 Score: 83
Period size: 19 Copynumber: 8.8 Consensus size: 18
8586138 TTATTAGGTT
*
8586148 TTTTTATCATTTTT-ATAA
1 TTTTTATAATTTTTAAT-A
*
8586166 TATTTATAAGTTTTT-ATGA
1 TTTTTATAA-TTTTTAAT-A
*
8586185 TTTTTAATAATTTTTTATAA
1 TTTTT-ATAATTTTTAAT-A
* * *
8586205 TATTTATAAGTTTTGATATTT
1 TTTTTATAA-TTTT--TAATA
8586226 TTTTTATAATTTTT-ATCA
1 TTTTTATAATTTTTAAT-A
* * *
8586244 CGTTATATCAA-CTTTAATA
1 -TTTTTAT-AATTTTTAATA
*
8586263 TTTTTAAAATTTTTAATA
1 TTTTTATAATTTTTAATA
*
8586281 ATTTTATAATTTTT-ATGA
1 TTTTTATAATTTTTAAT-A
8586299 TATTTTATAATTTTTA
1 T-TTTTATAATTTTTA
8586315 TGACTTTTTA
Statistics
Matches: 113, Mismatches: 22, Indels: 26
0.70 0.14 0.16
Matches are distributed among these distances:
17 5 0.04
18 32 0.28
19 43 0.38
20 23 0.20
21 8 0.07
22 2 0.02
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (18 bp):
TTTTTATAATTTTTAATA
Found at i:8586344 original size:22 final size:22
Alignment explanation
Indices: 8586309--8586381 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
8586299 TATTTTATAA
* *
8586309 TTTTTATGACTTTTTATATGTT
1 TTTTTAAGAATTTTTATATGTT
**
8586331 TTTTTAAGAATTTTTATACATT
1 TTTTTAAGAATTTTTATATGTT
* *
8586353 TTTATAA-AATTTTAAATATGTT
1 TTTTTAAGAATTTT-TATATGTT
*
8586375 TTATTAA
1 TTTTTAA
8586382 TTTTATAAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
21 6 0.15
22 34 0.85
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (22 bp):
TTTTTAAGAATTTTTATATGTT
Found at i:8586365 original size:20 final size:19
Alignment explanation
Indices: 8586264--8586389 Score: 85
Period size: 19 Copynumber: 6.4 Consensus size: 19
8586254 ACTTTAATAT
* *
8586264 TTTTAAAATTTTTA-ATAA
1 TTTTATAATTTTTATAAAA
* *
8586282 TTTTATAATTTTTATGATA
1 TTTTATAATTTTTATAAAA
* **
8586301 TTTTATAATTTTTATGACT
1 TTTTATAATTTTTATAAAA
* *
8586320 TTTTATATGTTTTTTTAAGAA
1 TTTTATA-ATTTTTATAA-AA
8586341 TTTTTATACATTTTTATAAAA
1 -TTTTATA-ATTTTTATAAAA
* *
8586362 TTTTAAATATGTTTTAT-TAA
1 TTTTATA-AT-TTTTATAAAA
8586382 TTTTATAA
1 TTTTATAA
8586390 AAAAATTATA
Statistics
Matches: 85, Mismatches: 18, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
18 13 0.15
19 26 0.31
20 23 0.27
21 8 0.09
22 15 0.18
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTTATAATTTTTATAAAA
Found at i:8586532 original size:19 final size:18
Alignment explanation
Indices: 8586490--8586540 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
8586480 AATATTTATA
8586490 TTTTTATAACTTTTACGAT
1 TTTTTATAA-TTTTACGAT
* *
8586509 ATTTTATAATTTTAATGAT
1 TTTTTATAATTTT-ACGAT
*
8586528 TTTTTTTAATTTT
1 TTTTTATAATTTT
8586541 TTGTATTTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 4 0.15
19 23 0.85
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.65
Consensus pattern (18 bp):
TTTTTATAATTTTACGAT
Found at i:8588893 original size:43 final size:42
Alignment explanation
Indices: 8588846--8588946 Score: 132
Period size: 42 Copynumber: 2.4 Consensus size: 42
8588836 TCCCAGACGT
* *
8588846 GGTCTTACATGTAATCAAATATTGATGCC-ACTGTCCCAAATAG
1 GGTCTTACACGTAATCAAATA-GGATGCCGA-TGTCCCAAATAG
* * *
8588889 GGTCTTACACGAAATCAAATAGGATGCCGATGTCCCAGATAT
1 GGTCTTACACGTAATCAAATAGGATGCCGATGTCCCAAATAG
8588931 GGTCTTACACGTAATC
1 GGTCTTACACGTAATC
8588947 TCAAATCGAT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
42 31 0.61
43 20 0.39
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.28
Consensus pattern (42 bp):
GGTCTTACACGTAATCAAATAGGATGCCGATGTCCCAAATAG
Found at i:8588977 original size:43 final size:43
Alignment explanation
Indices: 8588827--8588989 Score: 145
Period size: 43 Copynumber: 3.8 Consensus size: 43
8588817 AGCTCGTACA
* * * *
8588827 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATC-AAATATTG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCTCAA-ATCG
* * * * *
8588870 ATGCCACTGTCCCAAATAG-GGTCTTACACG-AA-ATCAAATAGG
1 ATGCCAATGTCCCAGA-CGTGGTCTTACACGTAATCTCAAAT-CG
* **
8588912 ATGCCGATGTCCCAGATATGGTCTTACACGTAATCTCAAATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCTCAAATCG
* *
8588955 ATGCCAATGTCCTAGACGTGGTCTTACACGAAATC
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATC
8588990 ACATATCAGA
Statistics
Matches: 94, Mismatches: 20, Indels: 12
0.75 0.16 0.10
Matches are distributed among these distances:
41 2 0.02
42 29 0.31
43 56 0.60
44 7 0.07
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCTCAAATCG
Found at i:8596548 original size:43 final size:42
Alignment explanation
Indices: 8596476--8596638 Score: 159
Period size: 43 Copynumber: 3.8 Consensus size: 42
8596466 TACAATACCA
** * *
8596476 ATGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCC
1 ATGTCCCAGATATGGTCTTACACGAAATCAAATATCGATGCC
* * *
8596518 ACTGTTCCAGATAAGGTCTTACACGAAATCAAATAT-GATGCTG
1 A-TGTCCCAGATATGGTCTTACACGAAATCAAATATCGATGC-C
* * *
8596561 ATGTCCCAGACATGGTCTTACACGTAATCTCAA-ATCGATGCC
1 ATGTCCCAGATATGGTCTTACACGAAATC-AAATATCGATGCC
* * *
8596603 AATGTCCCAGATGTGGTCTTACATGAAATCATATAT
1 -ATGTCCCAGATATGGTCTTACACGAAATCAAATAT
8596639 TAGAAATCCT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
42 33 0.34
43 63 0.66
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (42 bp):
ATGTCCCAGATATGGTCTTACACGAAATCAAATATCGATGCC
Found at i:8596621 original size:85 final size:85
Alignment explanation
Indices: 8596476--8596638 Score: 229
Period size: 85 Copynumber: 1.9 Consensus size: 85
8596466 TACAATACCA
* * * *
8596476 ATGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTTCCAGATAAGGTCTTACA
1 ATGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGATAAGGTCTTACA
8596541 CGAAATCAAATATGATGCTG
66 CGAAATCAAATATGATGCTG
* **
8596561 ATGTCCCAGACATGGTCTTACACGTAATCTCAA-ATCGATGCCAATGTCCCAGATGTGGTCTTAC
1 ATGTCCCAGACATGGTCTTACACGTAATC-AAATATCGATGCCAATGTCCCAGATAAGGTCTTAC
* *
8596625 ATGAAATCATATAT
65 ACGAAATCAAATAT
8596639 TAGAAATCCT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
85 66 0.97
86 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (85 bp):
ATGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGATAAGGTCTTACA
CGAAATCAAATATGATGCTG
Found at i:8598844 original size:14 final size:14
Alignment explanation
Indices: 8598809--8598858 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
8598799 ATACATATGC
8598809 ATGAATATATATAT
1 ATGAATATATATAT
8598823 AT-ATATATATATAT
1 ATGA-ATATATATAT
* *
8598837 ATGAATATATGTGT
1 ATGAATATATATAT
8598851 ATGAATAT
1 ATGAATAT
8598859 GATTATTATG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 1 0.03
14 30 0.94
15 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (14 bp):
ATGAATATATATAT
Found at i:8598846 original size:2 final size:2
Alignment explanation
Indices: 8598813--8598838 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8598803 ATATGCATGA
8598813 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8598839 GAATATATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8599488 original size:90 final size:92
Alignment explanation
Indices: 8599341--8599541 Score: 273
Period size: 90 Copynumber: 2.2 Consensus size: 92
8599331 ACATTTAAAA
* * * * * *
8599341 AAAAAAAGCAATTAAGCCCCTGCTTTTTTTTTTTGCACTCATTTGGATATTTGAACTTTCAAAAT
1 AAAAAAAGCAATTAAGCCCCTAC-TCTTTGTTTTGCACTCAATTGGATACTTAAACTTTCAAAAT
8599406 GCATAAAAAA-AGCCCTCAAAC-CTTTTC
65 GCATAAAAAAGA-CCCTCAAACTCTTTTC
*
8599433 AAAAAAAGCAATTAAGCCCCTAC-CTTTGTTTTGCACTCAATTGGGTACTTAAACTTTCAAAATG
1 AAAAAAAGCAATTAAGCCCCTACTCTTTGTTTTGCACTCAATTGGATACTTAAACTTTCAAAATG
* * *
8599497 TATCAAAAAGACCCTCAAACTTTTTTC
66 CATAAAAAAGACCCTCAAACTCTTTTC
8599524 AAAAAAAGCAATTAAGCC
1 AAAAAAAGCAATTAAGCC
8599542 AATTATTTTT
Statistics
Matches: 97, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
90 51 0.53
91 24 0.25
92 22 0.23
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (92 bp):
AAAAAAAGCAATTAAGCCCCTACTCTTTGTTTTGCACTCAATTGGATACTTAAACTTTCAAAATG
CATAAAAAAGACCCTCAAACTCTTTTC
Found at i:8601349 original size:2 final size:2
Alignment explanation
Indices: 8601342--8601369 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8601332 CTTATAATTA
8601342 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8601370 TTAAAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8602972 original size:3 final size:3
Alignment explanation
Indices: 8602959--8603043 Score: 52
Period size: 3 Copynumber: 28.7 Consensus size: 3
8602949 TTTTTGTAGC
* * *
8602959 ATT ATTT ATT ATT A-T ATT AACT GTT ATT ATT ATT ATT ATT ATC A-T
1 ATT A-TT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
8603004 ATCC ATT AAT A-T GTT ATT ATT -TT ATC ATT ATT ATT ATT AT
1 AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
8603044 ATATATATAT
Statistics
Matches: 62, Mismatches: 13, Indels: 14
0.70 0.15 0.16
Matches are distributed among these distances:
2 6 0.10
3 49 0.79
4 7 0.11
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:8603048 original size:2 final size:2
Alignment explanation
Indices: 8603041--8603065 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8603031 TTATTATTAT
8603041 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8603066 TCCTTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8603133 original size:43 final size:42
Alignment explanation
Indices: 8602987--8603133 Score: 117
Period size: 43 Copynumber: 3.5 Consensus size: 42
8602977 AACTGTTATT
* * * *
8602987 ATTATTATTATTATCATATCCATTAATATGTT-ATTATTTTATC
1 ATTATTATTATTATCATATACA-T-ATATTTTAAATATTATATC
* * *
8603030 ATTATTATTATTAT-ATATATATATA-TATATATA-TAT-TC
1 ATTATTATTATTATCATATACATATATTTTAAATATTATATC
* * *
8603068 CTT-TTATTATCATTCATGTACATATATTTTAAATATTATCATC
1 ATTATTATTATTA-TCATATACATATATTTTAAATATTAT-ATC
*
8603111 ATTATTATTATTATCATTTACAT
1 ATTATTATTATTATCATATACAT
8603134 GGCTATTATT
Statistics
Matches: 80, Mismatches: 16, Indels: 16
0.71 0.14 0.14
Matches are distributed among these distances:
37 8 0.10
38 5 0.06
39 12 0.15
40 11 0.14
41 4 0.05
42 5 0.06
43 27 0.34
44 8 0.10
ACGTcount: A:0.35, C:0.09, G:0.01, T:0.54
Consensus pattern (42 bp):
ATTATTATTATTATCATATACATATATTTTAAATATTATATC
Found at i:8603461 original size:13 final size:13
Alignment explanation
Indices: 8603443--8603467 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8603433 ATTATGTATG
8603443 TATATATTTCTTT
1 TATATATTTCTTT
8603456 TATATATTTCTT
1 TATATATTTCTT
8603468 ACTACTTCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (13 bp):
TATATATTTCTTT
Found at i:8615834 original size:84 final size:84
Alignment explanation
Indices: 8615738--8615932 Score: 297
Period size: 84 Copynumber: 2.3 Consensus size: 84
8615728 GTCATAAGGT
* *
8615738 CTTAAACCCCTAAGCAGTAGGGAAACAGACCAAATTGCAGATCTTA-TCCCTAAGCAGTAGTGGT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTACTCCCTAAGCAGTAGTGGA
*
8615802 GTAGATCGAAGACGAAGAAC
66 GCAGATCGAAGA-GAAGAAC
***
8615822 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTA-CTCCCTAAGCAGTAGTGG
8615887 AGCAGATCGAAGAGAAGAAC
65 AGCAGATCGAAGAGAAGAAC
8615907 CTT-AA-CCCTAAGCAGTAGGGTAACAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAG
8615933 GTTGAGTATA
Statistics
Matches: 103, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
83 21 0.20
84 44 0.43
85 10 0.10
86 28 0.27
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (84 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTACTCCCTAAGCAGTAGTGGA
GCAGATCGAAGAGAAGAAC
Found at i:8616095 original size:42 final size:43
Alignment explanation
Indices: 8616048--8616141 Score: 163
Period size: 42 Copynumber: 2.2 Consensus size: 43
8616038 CCTGAAACAG
* *
8616048 CAGTGGAGTTGATCGAAGCCGCAGCAGATCTCCTTGAAG-TTT
1 CAGTGGAGTTGATCGAAGCCACAGAAGATCTCCTTGAAGTTTT
8616090 CAGTGGAGTTGATCGAAGCCACAGAAGATCTCCTTGAAGTTTT
1 CAGTGGAGTTGATCGAAGCCACAGAAGATCTCCTTGAAGTTTT
8616133 CAGTGGAGT
1 CAGTGGAGT
8616142 AGATTAAAGT
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
42 37 0.76
43 12 0.24
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.27
Consensus pattern (43 bp):
CAGTGGAGTTGATCGAAGCCACAGAAGATCTCCTTGAAGTTTT
Found at i:8616523 original size:2 final size:2
Alignment explanation
Indices: 8616507--8616561 Score: 53
Period size: 2 Copynumber: 29.0 Consensus size: 2
8616497 AACTAATGGC
* * *
8616507 AT AT AT AC AT A- AT AT AT AT AT AT AT AT AC AC AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
8616547 -T AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT
8616562 TAGAAATGAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
1 3 0.07
2 41 0.93
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (2 bp):
AT
Found at i:8616539 original size:23 final size:22
Alignment explanation
Indices: 8616507--8616558 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 22
8616497 AACTAATGGC
*
8616507 ATATATACATAATATATATATAT
1 ATATACACATAATATAT-TATAT
8616530 ATATACACATAATATATTATAT
1 ATATACACATAATATATTATAT
8616552 ATATACA
1 ATATACA
8616559 TATTAGAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 12 0.43
23 16 0.57
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (22 bp):
ATATACACATAATATATTATAT
Found at i:8617099 original size:11 final size:11
Alignment explanation
Indices: 8617061--8617096 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
8617051 GGGAAAGAAA
8617061 AAGGAAGAGAG
1 AAGGAAGAGAG
8617072 -AGGAAGAGAG
1 AAGGAAGAGAG
*
8617082 AAGGGAGAGAG
1 AAGGAAGAGAG
8617093 AAGG
1 AAGG
8617097 GAGGGGAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (11 bp):
AAGGAAGAGAG
Found at i:8617216 original size:11 final size:11
Alignment explanation
Indices: 8617192--8617235 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
8617182 AAAAAAAATC
*
8617192 TTTT-TTTTTT
1 TTTTATTTTTA
8617202 TTTTATTTTTA
1 TTTTATTTTTA
*
8617213 TTTTATTTATA
1 TTTTATTTTTA
8617224 TTTTATGTTTTA
1 TTTTAT-TTTTA
8617236 ATATATATAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 4 0.14
11 21 0.72
12 4 0.14
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.82
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:8617396 original size:13 final size:15
Alignment explanation
Indices: 8617362--8617396 Score: 56
Period size: 13 Copynumber: 2.5 Consensus size: 15
8617352 TTTTTTGGTT
8617362 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
8617377 TTTTTTT-CTGG-AA
1 TTTTTTTGCTGGAAA
8617390 TTTTTTT
1 TTTTTTT
8617397 TTGGTGCTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 9 0.45
14 4 0.20
15 7 0.35
ACGTcount: A:0.14, C:0.06, G:0.14, T:0.66
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:8617396 original size:14 final size:14
Alignment explanation
Indices: 8617349--8617397 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
8617339 CGTTCTATTG
*
8617349 TTTTTTTT-TGG-T
1 TTTTTTTTCTGGAA
8617361 TTTTTTTTGCTGGAA
1 TTTTTTTT-CTGGAA
*
8617376 ATTTTTTTCTGGAA
1 TTTTTTTTCTGGAA
8617390 TTTTTTTT
1 TTTTTTTT
8617398 TGGTGCTGGA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
12 8 0.26
14 16 0.52
15 7 0.23
ACGTcount: A:0.10, C:0.04, G:0.14, T:0.71
Consensus pattern (14 bp):
TTTTTTTTCTGGAA
Found at i:8617398 original size:31 final size:29
Alignment explanation
Indices: 8617360--8617433 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 29
8617350 TTTTTTTTGG
*
8617360 TTTTTTTTTGCTGGAAATTTTTTTCTGGAAT
1 TTTTTTTTTGCTGG-AA-TTTTTGCTGGAAT
*
8617391 TTTTTTTTGGTGCTGGAATTTTTGCTGGATT
1 TTTTTTTT--TGCTGGAATTTTTGCTGGAAT
8617422 TTTTTTTTTGCT
1 TTTTTTTTTGCT
8617434 TCCCTCTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
29 4 0.10
31 27 0.69
32 2 0.05
33 6 0.15
ACGTcount: A:0.11, C:0.07, G:0.19, T:0.64
Consensus pattern (29 bp):
TTTTTTTTTGCTGGAATTTTTGCTGGAAT
Found at i:8617860 original size:35 final size:35
Alignment explanation
Indices: 8617821--8617889 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
8617811 GGGTGTGTGA
8617821 TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGAG
1 TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGAG
*
8617856 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
8617890 AGAGGCAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.20, C:0.13, G:0.51, T:0.16
Consensus pattern (35 bp):
TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGAG
Found at i:8618667 original size:48 final size:50
Alignment explanation
Indices: 8618591--8618736 Score: 183
Period size: 48 Copynumber: 2.9 Consensus size: 50
8618581 ATATGACCTA
*
8618591 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAA-AA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
* *
8618639 AGG-TACAACTCACCTCTCGCAATATGAGTTG-CTTTTGAAAGACAGAAATTAAC
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-A-A-CAA-TAAC
*
8618692 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
8618737 GGAATTGGAA
Statistics
Matches: 83, Mismatches: 6, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
47 9 0.11
48 29 0.35
49 1 0.01
50 2 0.02
51 1 0.01
52 3 0.04
53 29 0.35
54 9 0.11
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (50 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
Found at i:8618903 original size:69 final size:69
Alignment explanation
Indices: 8618792--8619161 Score: 621
Period size: 69 Copynumber: 5.4 Consensus size: 69
8618782 TCAACTCACC
8618792 TATGAGTTGATTTTTGAAACAT-AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGT-TTGAGGCTCAACTCACCTC
8618856 TCGC-A
64 TCGCAA
8618861 TATGAGTTGATTTTGAAACATAAATTGAAAATTA-CTCAACGTGTTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTG-AAATTACCTCAACGTGTTTGAGGCTCAACTCACCTCT
8618925 CGC-A
65 CGCAA
** *
8618929 TATGAGTTGATTTTGAAACATAAATTGAAATTAATTACAACGTGTTTGAGGCTC--C-CTCCT-T
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCT-CAACGTGTTTGAGGCTCAACTCACCTCT
8618990 CGCAA
65 CGCAA
8618995 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTTTGAGGCTCAACTCACCTCTC
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTTTGAGGCTCAACTCACCTCTC
8619060 GCAA
66 GCAA
8619064 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTTTGAGGCTCAACTCACCTCTC
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTTTGAGGCTCAACTCACCTCTC
8619129 GCAA
66 GCAA
8619133 TATGAGTTGATTTTGAAACATAAATTGAA
1 TATGAGTTGATTTTGAAACATAAATTGAA
8619162 TTTGAACTAA
Statistics
Matches: 287, Mismatches: 5, Indels: 18
0.93 0.02 0.06
Matches are distributed among these distances:
65 21 0.07
66 39 0.14
67 8 0.03
68 67 0.23
69 146 0.51
70 6 0.02
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Consensus pattern (69 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTTTGAGGCTCAACTCACCTCTC
GCAA
Found at i:8619023 original size:203 final size:217
Alignment explanation
Indices: 8618792--8619299 Score: 757
Period size: 203 Copynumber: 2.4 Consensus size: 217
8618782 TCAACTCACC
8618792 TATGAGTTGATTTTTGAAACAT-AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
8618856 TCGC-ATATGAGTTGATTTTGAAACATAAATTGAAAATTA-CTCAACGTGTTTGAGGCTCAACTC
65 TCGCAATATGAGTTGATTTTGAAACATAAATTG-AAATTACCTCAACGTGTTTGAGGCTCAACTC
* *
8618919 ACCTCTCGC-ATATGAGTTGATTTTGAAACATAAATTG-A-AA-T-TAA-TT-ACA-A-CGTGT-
129 ACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAATAACTAGAATTTGAAATACCGTGTC
*
8618974 TTGAGGCTC-CCTC-CT-TCGCAA
194 TTGAGGCTCAACTCACTCTCGCAA
8618995 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGT-TTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
8619059 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTTTGAGGCTCAACTCAC
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTTTGAGGCTCAACTCAC
8619124 CTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAATTTGAACTAAGAGAATTTGAAATACTC
131 CTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAA--T-AACT---AGAATTTGAAATAC-C
8619189 GTGTCTTGAGGCTCAACTCACTCTCGCAA
189 GTGTCTTGAGGCTCAACTCACTCTCGCAA
*
8619218 TATGAGTTGA-TTT-AGACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
*
8619281 CGCAATGTGAGTTGATTTT
66 CGCAATATGAGTTGATTTT
8619300 CTGTCACTTG
Statistics
Matches: 276, Mismatches: 5, Indels: 29
0.89 0.02 0.09
Matches are distributed among these distances:
202 40 0.14
203 93 0.34
204 28 0.10
205 1 0.00
209 2 0.01
210 1 0.00
214 2 0.01
215 2 0.01
216 2 0.01
217 1 0.00
219 5 0.02
220 9 0.03
221 31 0.11
222 43 0.16
223 16 0.06
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (217 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTTTGAGGCTCAACTCAC
CTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAATAACTAGAATTTGAAATACCGTGTCTT
GAGGCTCAACTCACTCTCGCAA
Found at i:8619033 original size:134 final size:136
Alignment explanation
Indices: 8618792--8619299 Score: 647
Period size: 134 Copynumber: 3.6 Consensus size: 136
8618782 TCAACTCACC
8618792 TATGAGTTGATTTTTGAAACAT-AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGT-TTGAGGCTC-ACTCACCTC
8618856 TCGC-ATATGAGTTGATTTTGAAACATAAATTGAAAATTACTCAACGTGTTTGAGGCTCAACTCA
63 TCGCAATATGAGTTGATTTTGAAACATAAATTG-AAATTACTCAACGTGTTTGAGGCTCAACTCA
8618920 CCTCTCGC-A
127 CCTCTCGCAA
** *
8618929 TATGAGTTGATTTTGAAACATAAATTGAAATTAATTACAACGTGTTTGAGGCTC-C-CTCCT-TC
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCT-CAACGTGTTTGAGGCTCACTCACCTCTC
8618991 GCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTTTGAGGCTCAACTCACC
65 GCAATATGAGTTGATTTTGAAACATAAATTGAAATTA-CTCAACGTGTTTGAGGCTCAACTCACC
8619056 TCTCGCAA
129 TCTCGCAA
8619064 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTTTGAGGCTCAACTCACCTCTC
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTTTGAGGCTC-ACTCACCTCTC
* *
8619129 GCAATATGAGTTGATTTTGAAACATAAATTGAATTTGAACTAAGAGAATTTGAAATACTCGTGTC
65 GCAATATGAGTTGATTTTGAAACATAAATTGAAATT--AC----------T--CA-A--CGTGT-
8619194 TTGAGGCTCAACTCA-CTCTCGCAA
112 TTGAGGCTCAACTCACCTCTCGCAA
*
8619218 TATGAGTTGA-TTT-AGACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGT-TTGAGGCTC-ACTCACCTCT
*
8619281 CGCAATGTGAGTTGATTTT
64 CGCAATATGAGTTGATTTT
8619300 CTGTCACTTG
Statistics
Matches: 333, Mismatches: 10, Indels: 40
0.87 0.03 0.10
Matches are distributed among these distances:
133 10 0.03
134 82 0.25
135 36 0.11
136 12 0.04
137 35 0.11
138 45 0.14
139 1 0.00
140 1 0.00
149 1 0.00
151 1 0.00
152 29 0.09
153 41 0.12
154 24 0.07
155 15 0.05
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (136 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTTTGAGGCTCACTCACCTCTCG
CAATATGAGTTGATTTTGAAACATAAATTGAAATTACTCAACGTGTTTGAGGCTCAACTCACCTC
TCGCAA
Found at i:8631225 original size:2 final size:2
Alignment explanation
Indices: 8631218--8631260 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
8631208 ATGTGCAAAA
* *
8631218 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8631260 A
1 A
8631261 AAATATACAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8631429 original size:2 final size:2
Alignment explanation
Indices: 8631424--8631498 Score: 93
Period size: 2 Copynumber: 39.0 Consensus size: 2
8631414 AACTAATGGC
*
8631424 AT AT AT AC AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
8631464 AT AC AC AT A- AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8631499 TAGAAATGAT
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
1 3 0.05
2 61 0.95
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:8632033 original size:11 final size:12
Alignment explanation
Indices: 8632017--8632053 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
8632007 AGAAAAAAAA
8632017 GGAAGAGAG-AG
1 GGAAGAGAGAAG
8632028 GGAAGAGAGAAG
1 GGAAGAGAGAAG
8632040 GG-AGAGAGAAG
1 GGAAGAGAGAAG
8632051 GGA
1 GGA
8632054 GGGGGAAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAGAGAGAAG
Found at i:8632054 original size:11 final size:11
Alignment explanation
Indices: 8632015--8632064 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
8632005 AAAGAAAAAA
*
8632015 AAGGAAGAGAG
1 AAGGGAGAGAG
8632026 -AGGGAAGAGAG
1 AAGGG-AGAGAG
8632037 AAGGGAGAGAG
1 AAGGGAGAGAG
* *
8632048 AAGGGAGGGGG
1 AAGGGAGAGAG
8632059 AAGGGA
1 AAGGGA
8632065 AATTCGGTCG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 3 0.09
11 27 0.79
12 4 0.12
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (11 bp):
AAGGGAGAGAG
Found at i:8632358 original size:13 final size:14
Alignment explanation
Indices: 8632324--8632390 Score: 66
Period size: 15 Copynumber: 4.5 Consensus size: 14
8632314 TTTTTTTGTT
8632324 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGG-AA
8632339 TTTTTTTGCTGGAA
1 TTTTTTTGCTGGAA
8632353 TTTTTTTTTGGTGCTGGAA
1 ---TTTTTT--TGCTGGAA
8632372 -TTTTTTGCTGG-A
1 TTTTTTTGCTGGAA
8632384 TTTTTTT
1 TTTTTTT
8632391 TTTTTTGCTT
Statistics
Matches: 46, Mismatches: 0, Indels: 14
0.77 0.00 0.23
Matches are distributed among these distances:
12 1 0.02
13 12 0.26
14 2 0.04
15 17 0.37
17 6 0.13
19 8 0.17
ACGTcount: A:0.12, C:0.06, G:0.21, T:0.61
Consensus pattern (14 bp):
TTTTTTTGCTGGAA
Found at i:8632358 original size:32 final size:30
Alignment explanation
Indices: 8632322--8632394 Score: 101
Period size: 32 Copynumber: 2.3 Consensus size: 30
8632312 GTTTTTTTTG
8632322 TTTTTTTTTGCTGGAAATTTTTTTGCTGGAAT
1 TTTTTTTTTGCTGG-AA-TTTTTTGCTGGAAT
*
8632354 TTTTTTTTGGTGCTGGAATTTTTTGCTGGATT
1 TTTTTTTT--TGCTGGAATTTTTTGCTGGAAT
8632386 TTTTTTTTT
1 TTTTTTTTT
8632395 TTGCTTCCCC
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
30 1 0.03
32 29 0.76
33 2 0.05
34 6 0.16
ACGTcount: A:0.11, C:0.05, G:0.19, T:0.64
Consensus pattern (30 bp):
TTTTTTTTTGCTGGAATTTTTTGCTGGAAT
Found at i:8632394 original size:34 final size:36
Alignment explanation
Indices: 8632315--8632395 Score: 98
Period size: 34 Copynumber: 2.3 Consensus size: 36
8632305 TTCTATTGTT
**
8632315 TTTTTTGTTTTTTTTTGCTGGAAATTTTTTTGCTGGA
1 TTTTTT-TTTTTTGGTGCTGGAAATTTTTTTGCTGGA
*
8632352 --ATTTTTTTTTGGTGCTGG-AA-TTTTTTGCTGGA
1 TTTTTTTTTTTTGGTGCTGGAAATTTTTTTGCTGGA
8632384 TTTTTTTTTTTT
1 TTTTTTTTTTTT
8632396 TGCTTCCCCT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
32 12 0.32
33 2 0.05
34 21 0.55
35 3 0.08
ACGTcount: A:0.10, C:0.05, G:0.19, T:0.67
Consensus pattern (36 bp):
TTTTTTTTTTTTGGTGCTGGAAATTTTTTTGCTGGA
Found at i:8632841 original size:35 final size:35
Alignment explanation
Indices: 8632802--8632870 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
8632792 GGGTGTGTGA
8632802 TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGAG
1 TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGAG
*
8632837 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
8632871 AGAGGCAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.20, C:0.13, G:0.51, T:0.16
Consensus pattern (35 bp):
TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGAG
Found at i:8634404 original size:17 final size:17
Alignment explanation
Indices: 8634382--8634422 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
8634372 TAATTTGTAT
8634382 TATTAAA-CATGTGAAAA
1 TATTAAATCAT-TGAAAA
*
8634399 TATTAAATCATTTAAAA
1 TATTAAATCATTGAAAA
8634416 TA-TAAAT
1 TATTAAAT
8634423 TTTTAATGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 5 0.23
17 14 0.64
18 3 0.14
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.37
Consensus pattern (17 bp):
TATTAAATCATTGAAAA
Found at i:8641525 original size:26 final size:24
Alignment explanation
Indices: 8641483--8641534 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 24
8641473 TTTTGAGAAT
8641483 TTTTTATATGAAATTTTCAAAACTTA
1 TTTTTATATGAAATTTT-AAAA-TTA
*
8641509 TTTTTATAT-AATTTTTTAAAATTA
1 TTTTTATATGAA-ATTTTAAAATTA
8641533 TT
1 TT
8641535 ATATATATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 5 0.21
25 6 0.25
26 13 0.54
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58
Consensus pattern (24 bp):
TTTTTATATGAAATTTTAAAATTA
Found at i:8641533 original size:24 final size:24
Alignment explanation
Indices: 8641466--8641534 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 24
8641456 GTTCATATTT
*
8641466 TATAATTTTTTGAGAA-T-TTTTTA
1 TATAATTTTTT-AAAATTATTTTTA
* *
8641489 TATGAAATTTTCAAAACTTATTTTTA
1 TAT-AATTTTTTAAAA-TTATTTTTA
8641515 TATAATTTTTTAAAATTATT
1 TATAATTTTTTAAAATTATT
8641535 ATATATATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
23 6 0.16
24 11 0.30
25 11 0.30
26 9 0.24
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.57
Consensus pattern (24 bp):
TATAATTTTTTAAAATTATTTTTA
Found at i:8641796 original size:22 final size:22
Alignment explanation
Indices: 8641768--8641811 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
8641758 TATCACTTCA
8641768 AATATGGATAGCCAAAAAAATT
1 AATATGGATAGCCAAAAAAATT
*
8641790 AATATGGATAGCCAAAAGAATT
1 AATATGGATAGCCAAAAAAATT
8641812 GTCTTCACCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.52, C:0.09, G:0.16, T:0.23
Consensus pattern (22 bp):
AATATGGATAGCCAAAAAAATT
Found at i:8653959 original size:15 final size:16
Alignment explanation
Indices: 8653939--8653969 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
8653929 TAGGTTTAGG
8653939 TTTTCTTTT-ATTTTA
1 TTTTCTTTTCATTTTA
8653954 TTTTCTTTTCATTTTA
1 TTTTCTTTTCATTTTA
8653970 AGTTTAGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTCTTTTCATTTTA
Found at i:8654254 original size:15 final size:15
Alignment explanation
Indices: 8654234--8654273 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
8654224 TTAATATCTA
8654234 TTCTTGATTAATTAG
1 TTCTTGATTAATTAG
8654249 TTCTTGATTAATTAG
1 TTCTTGATTAATTAG
8654264 TTCTTGATTA
1 TTCTTGATTA
8654274 TATCGAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.25, C:0.07, G:0.12, T:0.55
Consensus pattern (15 bp):
TTCTTGATTAATTAG
Found at i:8655334 original size:63 final size:63
Alignment explanation
Indices: 8655237--8655357 Score: 167
Period size: 63 Copynumber: 1.9 Consensus size: 63
8655227 TTCATTTCTC
*
8655237 ATTTTCATTTTTATTTGGAGAAAACTACATTCATTTCCAAATGATTTC-ATTTCTCCATTTTT
1 ATTTTCATTTTCATTTGGAGAAAACTACATTCATTTCCAAATGATTTCTATTTCTCCATTTTT
* *
8655299 ATTTTCATTTTCATTTTGGAGAAAACCTTA-A-TCATTTTCAAATGTTTTCTATTTCTCCA
1 ATTTTCATTTTCA-TTTGGAGAAAA-C-TACATTCATTTCCAAATGATTTCTATTTCTCCA
8655358 CTTCACCATT
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
62 12 0.23
63 27 0.52
64 11 0.21
65 2 0.04
ACGTcount: A:0.27, C:0.17, G:0.07, T:0.50
Consensus pattern (63 bp):
ATTTTCATTTTCATTTGGAGAAAACTACATTCATTTCCAAATGATTTCTATTTCTCCATTTTT
Found at i:8670664 original size:72 final size:72
Alignment explanation
Indices: 8670547--8670685 Score: 199
Period size: 72 Copynumber: 1.9 Consensus size: 72
8670537 CGTTACACCA
* * *
8670547 ATTGCTCGTCCAAGCTGAATATACTCCTGTCAGGTTACCAATCCAAGCTAAACATTTATAATGAC
1 ATTGCTCGTCCAAGCTGAATATACTCATGTCAGGTTACCAATCCAAGCTAAACATTTAAAACGAC
8670612 ATGTTTG
66 ATGTTTG
* * * *
8670619 ATTGCTTGTCCAAGCTGAATATA-TACATGTTAGGTTACCAGTCCAAGCTAAACCTTTAAAACGA
1 ATTGCTCGTCCAAGCTGAATATACT-CATGTCAGGTTACCAATCCAAGCTAAACATTTAAAACGA
8670683 CAT
65 CAT
8670686 CAGGTTACCA
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
71 1 0.02
72 58 0.98
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (72 bp):
ATTGCTCGTCCAAGCTGAATATACTCATGTCAGGTTACCAATCCAAGCTAAACATTTAAAACGAC
ATGTTTG
Found at i:8676955 original size:167 final size:167
Alignment explanation
Indices: 8676677--8677010 Score: 641
Period size: 167 Copynumber: 2.0 Consensus size: 167
8676667 ATAGTAGGGG
8676677 GAGTTGGGATTTTATTCTGAATTAAATTTTTGTAATTTTATTTTGTTTTGTTTTCTTCCCAAAAA
1 GAGTTGGGATTTTATTCTGAATTAAATTTTTGTAATTTTATTTTGTTTTGTTTTCTTCCCAAAAA
* *
8676742 TCGCTTTTCTTTTCTGATGTTCTTCCCTTTCCTCTCTCTACAAGTTTCTTTTTGTTTTCTTCTTC
66 TCCCTTTTCTTTTCTGATGTTCTTCCCTTTCCTCTCTCTACAAGTTTCTTTTTGTTTTCATCTTC
8676807 TATCCTGTTCACAATTATTCGTTTTTATCACTGTGTT
131 TATCCTGTTCACAATTATTCGTTTTTATCACTGTGTT
8676844 GAGTTGGGATTTTATTCTGAATTAAATTTTTGTAATTTTATTTTGTTTTGTTTTCTTCCCAAAAA
1 GAGTTGGGATTTTATTCTGAATTAAATTTTTGTAATTTTATTTTGTTTTGTTTTCTTCCCAAAAA
*
8676909 TCCCTTTTCTTTTCTGATGTTCTTCCCTTTCCTCTCTCTGCAAGTTTCTTTTTGTTTTCATCTTC
66 TCCCTTTTCTTTTCTGATGTTCTTCCCTTTCCTCTCTCTACAAGTTTCTTTTTGTTTTCATCTTC
8676974 TATCCTGTTCACAATTATTCGTTTTTATCACTGTGTT
131 TATCCTGTTCACAATTATTCGTTTTTATCACTGTGTT
8677011 TTGGATTTTC
Statistics
Matches: 164, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
167 164 1.00
ACGTcount: A:0.16, C:0.18, G:0.11, T:0.55
Consensus pattern (167 bp):
GAGTTGGGATTTTATTCTGAATTAAATTTTTGTAATTTTATTTTGTTTTGTTTTCTTCCCAAAAA
TCCCTTTTCTTTTCTGATGTTCTTCCCTTTCCTCTCTCTACAAGTTTCTTTTTGTTTTCATCTTC
TATCCTGTTCACAATTATTCGTTTTTATCACTGTGTT
Found at i:8688419 original size:15 final size:16
Alignment explanation
Indices: 8688394--8688427 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
8688384 AATATGTAAT
8688394 TTTATTATTTTAATAA
1 TTTATTATTTTAATAA
*
8688410 TTTA-TATTTTTATAA
1 TTTATTATTTTAATAA
8688425 TTT
1 TTT
8688428 TTACATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTATTATTTTAATAA
Found at i:8688468 original size:30 final size:32
Alignment explanation
Indices: 8688416--8688480 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 32
8688406 ATAATTTATA
* * *
8688416 TTTTTATAATTTTTACATAATT-AAAT-TAAT
1 TTTTTATAATTTTAAAAAAATTAAAATATAAT
*
8688446 TTTTTATTATTTTAAAAAAATTAAAATATAAT
1 TTTTTATAATTTTAAAAAAATTAAAATATAAT
8688478 TTT
1 TTT
8688481 ACCATTACTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 18 0.62
31 4 0.14
32 7 0.24
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (32 bp):
TTTTTATAATTTTAAAAAAATTAAAATATAAT
Found at i:8688523 original size:16 final size:14
Alignment explanation
Indices: 8688503--8688545 Score: 61
Period size: 13 Copynumber: 3.0 Consensus size: 14
8688493 TAAAAATTTT
8688503 ATAAATTATAAAAAA
1 ATAAATTA-AAAAAA
8688518 ATTAAATTAAAAAAA
1 A-TAAATTAAAAAAA
8688533 AT-AATTAAAAAAA
1 ATAAATTAAAAAAA
8688546 TTTCTTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 11 0.41
14 1 0.04
15 8 0.30
16 7 0.26
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
ATAAATTAAAAAAA
Found at i:8689228 original size:16 final size:16
Alignment explanation
Indices: 8689209--8689241 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8689199 TTTATAAATA
*
8689209 ATTTTTTTTATTTTTT
1 ATTTTTTTTACTTTTT
8689225 ATTTTTTTTACTTTTT
1 ATTTTTTTTACTTTTT
8689241 A
1 A
8689242 AGCTTTGTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (16 bp):
ATTTTTTTTACTTTTT
Found at i:8691049 original size:15 final size:15
Alignment explanation
Indices: 8691025--8691059 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
8691015 ATAAAATTAA
8691025 TTTAATAATTATATAT
1 TTTAATAATTATAT-T
8691041 TTTAA-AATTATATT
1 TTTAATAATTATATT
8691055 TTTAA
1 TTTAA
8691060 GAAGAGTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.32
15 8 0.42
16 5 0.26
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTAATAATTATATT
Found at i:8699270 original size:34 final size:33
Alignment explanation
Indices: 8699213--8699299 Score: 84
Period size: 34 Copynumber: 2.5 Consensus size: 33
8699203 CGAATCCATG
*
8699213 AAAAGCATATGTTTTGCTACTGTACTAATTAGTT
1 AAAAGCATAT-TATTGCTACTGTACTAATTAGTT
* * * * *
8699247 AAAAGCATATCTATTGTTGCTGTATTGATTTGTT
1 AAAAGCATAT-TATTGCTACTGTACTAATTAGTT
*
8699281 ATAAGCATATTATTTGCTA
1 AAAAGCATATTA-TTGCTA
8699300 GCATTTCAAT
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
33 2 0.05
34 40 0.95
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (33 bp):
AAAAGCATATTATTGCTACTGTACTAATTAGTT
Found at i:8699563 original size:90 final size:90
Alignment explanation
Indices: 8699396--8699642 Score: 273
Period size: 90 Copynumber: 2.7 Consensus size: 90
8699386 TGCAACTCTA
* * * *
8699396 GTGGTTCATCCACAAATTATT-TGGCAACT-TTTATCTGCAAAAAATGTTGTGCATTCACAACCA
1 GTGGTTCATCCACCAATT-TTCTGGCAGCTCTTT-TTTGC-AAATATGTTGTGCATTCACAACCA
** * *
8699459 TCTGGTAGCGTATTAACCTAAAACACTG
63 TCTGACAACATATTAACCTAAAACACTG
* *
8699487 GTGGTTCATCCACCCATTTTCTGGCAGCTCTTTTTTGCAAATATGTTGTGTATTCACAACCATCT
1 GTGGTTCATCCACCAATTTTCTGGCAGCTCTTTTTTGCAAATATGTTGTGCATTCACAACCATCT
* **
8699552 GACAACATATTAACTTGCAACACTG
66 GACAACATATTAACCTAAAACACTG
* ** ** **
8699577 GTGGTTCATCCACCGAGATTCAAGCAGCTCTCATTTGCAAATATGTTGTGCATTCACAACCATCT
1 GTGGTTCATCCACCAATTTTCTGGCAGCTCTTTTTTGCAAATATGTTGTGCATTCACAACCATCT
8699642 G
66 G
8699643 GTAGTCTATT
Statistics
Matches: 133, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
90 103 0.77
91 27 0.20
92 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (90 bp):
GTGGTTCATCCACCAATTTTCTGGCAGCTCTTTTTTGCAAATATGTTGTGCATTCACAACCATCT
GACAACATATTAACCTAAAACACTG
Found at i:8699678 original size:90 final size:90
Alignment explanation
Indices: 8699439--8699662 Score: 297
Period size: 90 Copynumber: 2.5 Consensus size: 90
8699429 TCTGCAAAAA
* ** *
8699439 ATGTTGTGCATTCACAACCATCTGGTAGCGTATTAACCTAAAACACTGGTGGTTCATCCACCCAT
1 ATGTTGTGCATTCACAACCATCTGGTAGCATATTAACCTGCAACACTGGTGGTTCATCCACCCAG
* ** **
8699504 TTTCTGGCAGCTCTTTTTTGCAAAT
66 ATTCAAGCAGCTCTCATTTGCAAAT
* ** * * *
8699529 ATGTTGTGTATTCACAACCATCTGACAACATATTAACTTGCAACACTGGTGGTTCATCCACCGAG
1 ATGTTGTGCATTCACAACCATCTGGTAGCATATTAACCTGCAACACTGGTGGTTCATCCACCCAG
8699594 ATTCAAGCAGCTCTCATTTGCAAAT
66 ATTCAAGCAGCTCTCATTTGCAAAT
8699619 ATGTTGTGCATTCACAACCATCTGGTAGTC-TATTAACCTGCAAC
1 ATGTTGTGCATTCACAACCATCTGGTAG-CATATTAACCTGCAAC
8699663 TTTTGTGGTT
Statistics
Matches: 113, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
90 112 0.99
91 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (90 bp):
ATGTTGTGCATTCACAACCATCTGGTAGCATATTAACCTGCAACACTGGTGGTTCATCCACCCAG
ATTCAAGCAGCTCTCATTTGCAAAT
Done.