Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 331 of 433
Found at i:103475811 original size:41 final size:41
Alignment explanation
Indices: 103475754--103475836 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
103475744 GGAAAACATG
103475754 ATATTGATTGCTTAGATTTAATAAATGGGATTGGTAAGTTT
1 ATATTGATTGCTTAGATTTAATAAATGGGATTGGTAAGTTT
103475795 ATATTGATTGCTTAGATTTAATAAATGGGATTGGTAAGTTT
1 ATATTGATTGCTTAGATTTAATAAATGGGATTGGTAAGTTT
103475836 A
1 A
103475837 GTTTCTGTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.43
Consensus pattern (41 bp):
ATATTGATTGCTTAGATTTAATAAATGGGATTGGTAAGTTT
Found at i:103477955 original size:26 final size:26
Alignment explanation
Indices: 103477926--103477978 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
103477916 TCAAACATGC
103477926 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
103477952 ATTTTGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
103477978 A
1 A
103477979 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.42
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:103479118 original size:22 final size:20
Alignment explanation
Indices: 103479077--103479120 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
103479067 GAGGAAAAGA
**
103479077 AGAAAAAGAAAAAGTTGAAG
1 AGAAAAAGAAAAAGAAGAAG
103479097 AGAAAAAGAGAAAAGAAAGAAG
1 AGAAAAAGA-AAAAG-AAGAAG
103479119 AG
1 AG
103479121 GAGAATGGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 9 0.45
21 5 0.25
22 6 0.30
ACGTcount: A:0.68, C:0.00, G:0.27, T:0.05
Consensus pattern (20 bp):
AGAAAAAGAAAAAGAAGAAG
Found at i:103479263 original size:24 final size:24
Alignment explanation
Indices: 103479224--103479329 Score: 149
Period size: 24 Copynumber: 4.4 Consensus size: 24
103479214 GCCGGCCAAC
*
103479224 TCCTGCTCCTTGATCAGCTCCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
*
103479249 TCTTCTCCTTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
**
103479273 TCCTCTCCCATATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
103479297 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
103479321 TCTTCTCCT
1 TCCTCTCCT
103479330 GATAGCCTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
24 70 0.96
25 3 0.04
ACGTcount: A:0.20, C:0.39, G:0.06, T:0.36
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:103479328 original size:12 final size:12
Alignment explanation
Indices: 103479236--103479329 Score: 55
Period size: 12 Copynumber: 7.8 Consensus size: 12
103479226 CTGCTCCTTG
*
103479236 ATCAGCTCCTAA
1 ATCATCTCCTAA
* **
103479248 ATCTTCTCCTTT
1 ATCATCTCCTAA
*
103479260 ATCAGCTCCTAA
1 ATCATCTCCTAA
* * *
103479272 ATCCTCTCCCAT
1 ATCATCTCCTAA
*
103479284 ATCAGCTCCTAA
1 ATCATCTCCTAA
* *
103479296 ATCCTCTCCCT-T
1 ATCATCT-CCTAA
*
103479308 ATCAGCTCCTAA
1 ATCATCTCCTAA
*
103479320 ATCTTCTCCT
1 ATCATCTCCT
103479330 GATAGCCTTT
Statistics
Matches: 56, Mismatches: 24, Indels: 4
0.67 0.29 0.05
Matches are distributed among these distances:
11 3 0.05
12 50 0.89
13 3 0.05
ACGTcount: A:0.22, C:0.38, G:0.04, T:0.35
Consensus pattern (12 bp):
ATCATCTCCTAA
Found at i:103484057 original size:24 final size:24
Alignment explanation
Indices: 103484024--103484123 Score: 155
Period size: 24 Copynumber: 4.2 Consensus size: 24
103484014 CAACTCATGA
* *
103484024 TCCTTGATCAGCTCCTAAATCTTC
1 TCCTTTATCAGCTCCTAAATCCTC
103484048 TCCTTTATCAGCTCCTAAATCCTC
1 TCCTTTATCAGCTCCTAAATCCTC
*
103484072 TCCCTTATCAGCTCCTAAATCCTC
1 TCCTTTATCAGCTCCTAAATCCTC
* *
103484096 TCCCTTATCAGCTCCTAAATCTTC
1 TCCTTTATCAGCTCCTAAATCCTC
103484120 TCCT
1 TCCT
103484124 GATAGCCTTT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 71 1.00
ACGTcount: A:0.20, C:0.38, G:0.05, T:0.37
Consensus pattern (24 bp):
TCCTTTATCAGCTCCTAAATCCTC
Found at i:103486018 original size:27 final size:28
Alignment explanation
Indices: 103485980--103486330 Score: 329
Period size: 27 Copynumber: 13.0 Consensus size: 28
103485970 AAACATACAT
* *
103485980 CACATAGGGGCAAAA-CAGTCATTCTAC
1 CACATAAGGGCAAAATCAGTCATTTTAC
*
103486007 CACATAAAGGCAAAAT-AGTCATTTTAC
1 CACATAAGGGCAAAATCAGTCATTTTAC
*
103486034 CTCATAAGGGCAAAATC-GTCATTTTAC
1 CACATAAGGGCAAAATCAGTCATTTTAC
* *
103486061 CACATAAGGG-AAAAACTA-TCATTTTAA
1 CACATAAGGGCAAAATC-AGTCATTTTAC
* * *
103486088 CACATAAGGG-TAAATCAATCATTTTGC
1 CACATAAGGGCAAAATCAGTCATTTTAC
* * * **
103486115 CACATAAGGCCAAAAGC-GTGATTTTTT
1 CACATAAGGGCAAAATCAGTCATTTTAC
*
103486142 CACATAAGGGCAAAAGT--GTCATTTTAT
1 CACATAAGGGCAAAA-TCAGTCATTTTAC
*
103486169 CACATAAGGGCAAAATC-GTCATTTTAA
1 CACATAAGGGCAAAATCAGTCATTTTAC
* * *
103486196 CGCATAAGGGAAAAATCA-TCATTTTAA
1 CACATAAGGGCAAAATCAGTCATTTTAC
* *
103486223 CACATAAGGCCAAAAT-AGTCATTTTGC
1 CACATAAGGGCAAAATCAGTCATTTTAC
* * *
103486250 CAGATAAGGGCAAAACCA-TCATTTTAT
1 CACATAAGGGCAAAATCAGTCATTTTAC
* *
103486277 CACATAAAGGCAAAATC-GTC-TTTTAA
1 CACATAAGGGCAAAATCAGTCATTTTAC
*
103486303 CACATAAGGGCAAAAT-AGTAATTTTAC
1 CACATAAGGGCAAAATCAGTCATTTTAC
103486330 C
1 C
103486331 TTACAAGGGT
Statistics
Matches: 267, Mismatches: 43, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
26 30 0.11
27 232 0.87
28 5 0.02
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (28 bp):
CACATAAGGGCAAAATCAGTCATTTTAC
Found at i:103486173 original size:108 final size:107
Alignment explanation
Indices: 103485980--103486318 Score: 364
Period size: 108 Copynumber: 3.1 Consensus size: 107
103485970 AAACATACAT
* * * * * * *
103485980 CACATAGGGGCAAAA-CAGTCATTCTACCACATAAAGG-CAAAATAGTCATTTTACCTCATAAGG
1 CACATAAGGGAAAAATCA-TCATTTTAACACAT-AAGGCCAAAAGAGTCATTTTGCCACATAAGG
* * *
103486043 GCAAAATCGTCATTTTACCACATAAGGG-AAAAACTATCATTTTAA
64 GCAAAAT-GTCATTTTATCACATAAGGGCAAAATC-GTCATTTTAA
* ** * * **
103486088 CACATAAGGG-TAAATCAATCATTTTGCCACATAAGGCCAAAAGCGTGATTTTTTCACATAAGGG
1 CACATAAGGGAAAAATC-ATCATTTTAACACATAAGGCCAAAAGAGTCATTTTGCCACATAAGGG
103486152 CAAAAGTGTCATTTTATCACATAAGGGCAAAATCGTCATTTTAA
65 CAAAA-TGTCATTTTATCACATAAGGGCAAAATCGTCATTTTAA
* * *
103486196 CGCATAAGGGAAAAATCATCATTTTAACACATAAGGCCAAAATAGTCATTTTGCCAGATAAGGGC
1 CACATAAGGGAAAAATCATCATTTTAACACATAAGGCCAAAAGAGTCATTTTGCCACATAAGGGC
** *
103486261 AAAACCATCATTTTATCACATAAAGGCAAAATCGTC-TTTTAA
66 AAAA-TGTCATTTTATCACATAAGGGCAAAATCGTCATTTTAA
*
103486303 CACATAAGGGCAAAAT
1 CACATAAGGGAAAAAT
103486319 AGTAATTTTA
Statistics
Matches: 196, Mismatches: 29, Indels: 13
0.82 0.12 0.05
Matches are distributed among these distances:
107 27 0.14
108 157 0.80
109 12 0.06
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (107 bp):
CACATAAGGGAAAAATCATCATTTTAACACATAAGGCCAAAAGAGTCATTTTGCCACATAAGGGC
AAAATGTCATTTTATCACATAAGGGCAAAATCGTCATTTTAA
Found at i:103486353 original size:27 final size:27
Alignment explanation
Indices: 103486323--103486381 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
103486313 CAAAATAGTA
* *
103486323 ATTTTACCTTA-CAAGGGTATTACAGTC
1 ATTTTACCCTACCAA-GGTATAACAGTC
*
103486350 ATTTTACCCTACCTAGGTATAACAGTC
1 ATTTTACCCTACCAAGGTATAACAGTC
103486377 ATTTT
1 ATTTT
103486382 CAAGTAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 26 0.93
28 2 0.07
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (27 bp):
ATTTTACCCTACCAAGGTATAACAGTC
Found at i:103489927 original size:27 final size:26
Alignment explanation
Indices: 103489868--103490191 Score: 254
Period size: 27 Copynumber: 12.0 Consensus size: 26
103489858 AAACATCCAT
* * **
103489868 CACATAGGGGCAAAACAGTCATCCTA
1 CACATAAGGGCAAAATAGTCATTTTA
103489894 CCACATAAGGGCAAAATAGTCATTTTA
1 -CACATAAGGGCAAAATAGTCATTTTA
* * *
103489921 CTTCATAAGGGAAAAATCGTCATTTTA
1 C-ACATAAGGGCAAAATAGTCATTTTA
* * **
103489948 CCATATAAGGGAAAAATCTTCATTTTAA
1 -CACATAAGGGCAAAATAGTCATTTT-A
*
103489976 CACATAAGGGCAAAATAGTCATTTTGC
1 CACATAAGGGCAAAATAGTCATTTT-A
103490003 CACATAAGGGCAAAATCA-TCATTTTA
1 CACATAAGGGCAAAAT-AGTCATTTTA
** * * *
103490029 TTGCAAAAGGGCAAAATCGACATTTTAA
1 -CACATAAGGGCAAAATAGTCATTTT-A
* * * *
103490057 CGCATAAGCGCAAAATCGTTATTTTAA
1 CACATAAGGGCAAAATAGTCATTTT-A
* * *
103490084 CACATAAGGGCAAAAAAGTTATTTTGC
1 CACATAAGGGCAAAATAGTCATTTT-A
*
103490111 CACATAAGGGCAAAATCGTCATTTTA
1 CACATAAGGGCAAAATAGTCATTTTA
* * * *
103490137 TCTCATAAGGGTAAAATTGTCTTTTTAA
1 -CACATAAGGGCAAAATAGTCATTTT-A
* *
103490165 CACATAAGGGCAAAACAATCATTTTA
1 CACATAAGGGCAAAATAGTCATTTTA
103490191 C
1 C
103490192 CTTATAGGGG
Statistics
Matches: 241, Mismatches: 47, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.01
27 233 0.97
28 5 0.02
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.28
Consensus pattern (26 bp):
CACATAAGGGCAAAATAGTCATTTTA
Found at i:103490213 original size:27 final size:27
Alignment explanation
Indices: 103490183--103490296 Score: 131
Period size: 27 Copynumber: 4.2 Consensus size: 27
103490173 GGCAAAACAA
* *
103490183 TCATTTTACCTTATAGGGGTACTACAG
1 TCATTTTACCCTATAGGGGTATTACAG
* * *
103490210 TCATTTTACCCTACAAGGGTATCACAG
1 TCATTTTACCCTATAGGGGTATTACAG
* *
103490237 TTATTTTACCCTATAGGGGTATTACAA
1 TCATTTTACCCTATAGGGGTATTACAG
* *
103490264 TCATTTTATCCTAT-GGAGGTATTATAG
1 TCATTTTACCCTATAGG-GGTATTACAG
103490291 TCATTT
1 TCATTT
103490297 CAAGTAAATA
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
26 2 0.03
27 70 0.97
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (27 bp):
TCATTTTACCCTATAGGGGTATTACAG
Found at i:103490217 original size:54 final size:55
Alignment explanation
Indices: 103490159--103490271 Score: 122
Period size: 54 Copynumber: 2.1 Consensus size: 55
103490149 AAAATTGTCT
* * *
103490159 TTTTAACAC-ATAAGGGCAAAACAATCATTTTACCTTATAGGGGTACTACAGTCA
1 TTTTAACACTACAAGGGCAAAACAATCATTTTACCCTATAGGGGTACTACAATCA
* * ** * * *
103490213 TTTT-ACCCTACAAGGGTATCACAGTTATTTTACCCTATAGGGGTATTACAATCA
1 TTTTAACACTACAAGGGCAAAACAATCATTTTACCCTATAGGGGTACTACAATCA
103490267 TTTTA
1 TTTTA
103490272 TCCTATGGAG
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
53 3 0.06
54 44 0.94
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (55 bp):
TTTTAACACTACAAGGGCAAAACAATCATTTTACCCTATAGGGGTACTACAATCA
Found at i:103493415 original size:3 final size:3
Alignment explanation
Indices: 103493407--103493456 Score: 50
Period size: 3 Copynumber: 16.7 Consensus size: 3
103493397 AATTTTGCCA
* *
103493407 TAT TAT TAT TA- TAT TAT TGT TATT TAT TAT TA- TATT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT
103493452 TAT TA
1 TAT TA
103493457 ACAAATATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
2 4 0.10
3 30 0.77
4 5 0.13
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:103493454 original size:21 final size:20
Alignment explanation
Indices: 103493407--103493456 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
103493397 AATTTTGCCA
* *
103493407 TATTATTATTATATTATTGT
1 TATTATTATTATATTACTAT
103493427 TATTTATTATTATATTTACTAT
1 TA-TTATTATTATA-TTACTAT
103493449 TATTATTA
1 TATTATTA
103493457 ACAAATATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 2 0.08
21 17 0.65
22 7 0.27
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (20 bp):
TATTATTATTATATTACTAT
Found at i:103493557 original size:21 final size:21
Alignment explanation
Indices: 103493531--103493573 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
103493521 TTTAAAAACA
* *
103493531 TTATTATATTTACTATTTTAT
1 TTATTATATTTAATATATTAT
103493552 TTATTATATTTAATATATTAT
1 TTATTATATTTAATATATTAT
103493573 T
1 T
103493574 ATTCACTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (21 bp):
TTATTATATTTAATATATTAT
Found at i:103493774 original size:26 final size:26
Alignment explanation
Indices: 103493739--103493788 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
103493729 GTAAATATTT
* * *
103493739 AATACTATATTATGCATGTATTTTTC
1 AATACCATATCATGCATATATTTTTC
*
103493765 AATACCATATCATGTATATATTTT
1 AATACCATATCATGCATATATTTT
103493789 ATGCTATGTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.34, C:0.12, G:0.06, T:0.48
Consensus pattern (26 bp):
AATACCATATCATGCATATATTTTTC
Found at i:103497022 original size:93 final size:93
Alignment explanation
Indices: 103496909--103497080 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
103496899 GCCCATAAGT
* * *
103496909 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
103496974 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
103497002 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
103497067 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
103497081 CAAATATCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:103497076 original size:46 final size:46
Alignment explanation
Indices: 103496901--103497076 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
103496891 TGTAACCCGC
* * * * *
103496901 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
103496947 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* * *
103496997 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCCCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
103497040 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
103497077 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:103502794 original size:25 final size:25
Alignment explanation
Indices: 103502754--103502844 Score: 87
Period size: 25 Copynumber: 3.6 Consensus size: 25
103502744 TTATTAGGGT
*
103502754 TACCGATTTATGGCTCATGAGAGCA
1 TACCGATTTATAGCTCATGAGAGCA
* *
103502779 TATCGATTTATAGCTCGTGAGAGCA
1 TACCGATTTATAGCTCATGAGAGCA
* * *
103502804 TACCGATCTT-CAGGTCA-AATGAGCA
1 TACCGAT-TTATAGCTCATGA-GAGCA
*
103502829 TACCGATTCATAGCTC
1 TACCGATTTATAGCTC
103502845 GTATGAGCAG
Statistics
Matches: 52, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
24 2 0.04
25 48 0.92
26 2 0.04
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (25 bp):
TACCGATTTATAGCTCATGAGAGCA
Found at i:103502850 original size:25 final size:25
Alignment explanation
Indices: 103502774--103502853 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
103502764 TGGCTCATGA
* *
103502774 GAGCATATCGATTTATAGCTCGTGA-
1 GAGCATACCGATTCATAGCTCGT-AT
* * **
103502799 GAGCATACCGA-TCTTCAGGTCAAAT
1 GAGCATACCGATTCAT-AGCTCGTAT
103502824 GAGCATACCGATTCATAGCTCGTAT
1 GAGCATACCGATTCATAGCTCGTAT
103502849 GAGCA
1 GAGCA
103502854 GATATGTACA
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
24 3 0.07
25 36 0.86
26 3 0.07
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (25 bp):
GAGCATACCGATTCATAGCTCGTAT
Found at i:103505879 original size:50 final size:51
Alignment explanation
Indices: 103505798--103505939 Score: 189
Period size: 50 Copynumber: 2.8 Consensus size: 51
103505788 GCTAAATGAC
* * *
103505798 CTTGTATATTCGGCCATATAGGTATGTACATATGTGATGTTGTA-TTGGAT
1 CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATGTTATATTTGAAT
* * *
103505848 CTTGAATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTTGAAT
1 CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATGTTATATTTGAAT
* * *
103505899 -TTGTATATTCGGCCATATAAGTAATTGCATATGTGATGTTA
1 CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATGTTA
103505940 AGTTTGAGTG
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
50 74 0.94
51 5 0.06
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (51 bp):
CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATGTTATATTTGAAT
Found at i:103509498 original size:50 final size:50
Alignment explanation
Indices: 103509417--103509682 Score: 354
Period size: 50 Copynumber: 5.3 Consensus size: 50
103509407 GCTAAATGAC
* * * * ** *
103509417 CTTGTATATTCGGCCACATAGGTATGTACATATGTGATGTTGTATTGGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
* *
103509467 CTTGAATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTTGAAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTG-AT
* * * *
103509518 -TTGTATATTCAGCCATATAAGTAAGTACATATGTGATGTTAAATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
* *
103509567 CTTGCATATTCGGCCTTATAGGTAAGCACATATGTGATATTAAATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
* *
103509617 CTTGCATATTCGGCCATATATGTAAGCACATATGTGATATTAAATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
*
103509667 CTTGTATATTCAGCCA
1 CTTGTATATTCGGCCA
103509683 AATGAGTGAT
Statistics
Matches: 191, Mismatches: 23, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
49 2 0.01
50 187 0.98
51 2 0.01
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39
Consensus pattern (50 bp):
CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
Found at i:103517068 original size:48 final size:48
Alignment explanation
Indices: 103516997--103517119 Score: 167
Period size: 48 Copynumber: 2.6 Consensus size: 48
103516987 TGTGTGTTAC
*
103516997 TGTAAGACCATGTCTGGGACATGGCATTGGCCA-CATTATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGG-CATCATTATGAGAGCCAG
** * * *
103517045 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCATTATGAGAGCCAG
*
103517093 TGTAAGACCATGTTTGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
103517120 GTAACATTCT
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
47 2 0.03
48 65 0.97
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCATTATGAGAGCCAG
Found at i:103519765 original size:48 final size:48
Alignment explanation
Indices: 103519649--103519882 Score: 203
Period size: 48 Copynumber: 4.9 Consensus size: 48
103519639 ATGACATCGT
*
103519649 CCACATTATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCT-G
1 CCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT-TGG
*** * *
103519697 CGTTGA-TATGCA-TGCTAGTGTAAGACCATGTCTGGGACATGGCATTGG
1 C-CACATTATG-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGG
103519745 CCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGG
1 CCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGG
* * ** *
103519793 ---TATTGAAACGAGAGCTTGTGTAAGACCATGTCTGGGAAATGGCATTGG
1 CCACATT---ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGG
* * * * * *
103519841 CCTCGA-CATGTGAGTCAATGTAAGACCATGTCTGGAACATGG
1 CCAC-ATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGG
103519883 AATCGGTAAT
Statistics
Matches: 148, Mismatches: 26, Indels: 24
0.75 0.13 0.12
Matches are distributed among these distances:
45 3 0.02
47 3 0.02
48 139 0.94
49 2 0.01
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
CCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGG
Found at i:103519814 original size:96 final size:96
Alignment explanation
Indices: 103519649--103519882 Score: 296
Period size: 96 Copynumber: 2.4 Consensus size: 96
103519639 ATGACATCGT
* * * *
103519649 CCACATTATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCTGCGTTGATATGCATGCTA
1 CCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCTGCGTTGAAACGCAAGCTA
*
103519714 GTGTAAGACCATGTCTGGGACATGGCATTGG
66 GTGTAAGACCATGTCTGGGAAATGGCATTGG
103519745 CCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT-TG-GTATTGAAACG-AGAG
1 CCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCTGCG--TTGAAACGCA-AG
*
103519807 CTTGTGTAAGACCATGTCTGGGAAATGGCATTGG
63 CTAGTGTAAGACCATGTCTGGGAAATGGCATTGG
* * * * * *
103519841 CCTCGA-CATGTGAGTCAATGTAAGACCATGTCTGGAACATGG
1 CCAC-ATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGG
103519883 AATCGGTAAT
Statistics
Matches: 122, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
94 1 0.01
95 3 0.02
96 117 0.96
97 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (96 bp):
CCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCTGCGTTGAAACGCAAGCTA
GTGTAAGACCATGTCTGGGAAATGGCATTGG
Found at i:103524870 original size:13 final size:13
Alignment explanation
Indices: 103524852--103524878 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
103524842 GAAGTAATCG
103524852 CACACGGGCGTGT
1 CACACGGGCGTGT
103524865 CACACGGGCGTGT
1 CACACGGGCGTGT
103524878 C
1 C
103524879 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:103526440 original size:26 final size:26
Alignment explanation
Indices: 103526411--103526463 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
103526401 TAGTGGTTAG
103526411 GAATGAAGAGGAACATTTTAAAGTTT
1 GAATGAAGAGGAACATTTTAAAGTTT
* *
103526437 GAATGAAGAGGAACGTTTTAGAGTTT
1 GAATGAAGAGGAACATTTTAAAGTTT
103526463 G
1 G
103526464 TCTCTAAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.04, G:0.28, T:0.30
Consensus pattern (26 bp):
GAATGAAGAGGAACATTTTAAAGTTT
Found at i:103528889 original size:48 final size:47
Alignment explanation
Indices: 103528808--103529666 Score: 680
Period size: 48 Copynumber: 17.9 Consensus size: 47
103528798 AATTGGGTGA
* * *
103528808 TATGTGTGCTAATGTAAGACCATGTCTGAGACATGTCATCGGCCACAT
1 TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACAT
* * * * **
103528856 TATGAGAGCTAATATAAGACCATGTCTGGGACATGGCATCGGC-GTT
1 TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAT
* * * * **
103528902 GATATGTGTGCTAGTGTAAGATCATGTTTAGAACATGGCATCAACCACAT
1 --TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCACAT
* * * * ***
103528952 TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGTGTTGA-
1 TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATC-G-GCACAT
* *
103529000 TATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCA-TT
1 TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAT
*
103529046 GATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGCCATCGGCCACAT
1 --TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACAT
* * * * *
103529096 TATGAGAGCTAATATAAGACCATGTCTGGGACATGGCATCGGCA-TT
1 TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAT
* * * * *
103529142 GATATGTGTGCTAGTATAAGATCATGTCTAGAACATGGCATCGACCACAT
1 --TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCG-GCACAT
** * * * ***
103529192 TATAAGAGCCAGTGTAAGACCATGTCTGGGGCATGGCATCAGTGTTGA-
1 TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATC-G-GCACAT
* *
103529240 TATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCA-TT
1 TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAT
* *
103529286 GATATGTGTGCTAGTGTAAGATCATGTCTGGTACATGGCATCGGCCACAT
1 --TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACAT
* * * *
103529336 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TT
1 TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAT
* * * * * *
103529382 GATATGTGTGCTAGTATAAGATCATGTCTAGAACATGGCATCGACCATAT
1 --TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCG-GCACAT
** * * * ***
103529432 TATAAGAGCCAGTGTAAGACCATGTCTGGGGCATGGCATCAGTGTTGA-
1 TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATC-G-GCACAT
* *
103529480 TATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATC-GCA-TT
1 TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAT
* *
103529525 GATATGTGTGCTAGTGTAAGATCATGTCTGGTACATGGCATCGGCCACAT
1 --TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACAT
* * * * * *
103529575 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATC--AACCT
1 TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAT
* * *
103529620 CGACGTGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 -TA--TGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
103529667 ATTTACCCTC
Statistics
Matches: 641, Mismatches: 134, Indels: 70
0.76 0.16 0.08
Matches are distributed among these distances:
45 4 0.01
46 6 0.01
47 44 0.07
48 564 0.88
49 16 0.02
50 7 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (47 bp):
TATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAT
Found at i:103529229 original size:240 final size:240
Alignment explanation
Indices: 103528805--103529614 Score: 1406
Period size: 240 Copynumber: 3.4 Consensus size: 240
103528795 GACAATTGGG
* * * *
103528805 TGATATGTGTGCTAATGTAAGACCATGTCTGAGACATGTCATCGGCCACATTATGAGAGCTAATA
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAATA
* * *
103528870 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGATCATGTTTAGAA
66 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTAGTATAAGATCATGTCTAGAA
* * * *
103528935 CATGGCATCAACCACATTATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGTGTTGA
131 CATGGCATCGACCACATTATAAGAGCCAGTGTAAGACCATGTCTGGGGCATGGCATCAGTGTTGA
103529000 TATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAT
196 TATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAT
* *
103529045 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGCCATCGGCCACATTATGAGAGCTAATA
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAATA
103529110 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTAGTATAAGATCATGTCTAGAA
66 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTAGTATAAGATCATGTCTAGAA
103529175 CATGGCATCGACCACATTATAAGAGCCAGTGTAAGACCATGTCTGGGGCATGGCATCAGTGTTGA
131 CATGGCATCGACCACATTATAAGAGCCAGTGTAAGACCATGTCTGGGGCATGGCATCAGTGTTGA
103529240 TATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAT
196 TATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAT
* * * *
103529285 TGATATGTGTGCTAGTGTAAGATCATGTCTGGTACATGGCATCGGCCACATTATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAATA
103529350 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTAGTATAAGATCATGTCTAGAA
66 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTAGTATAAGATCATGTCTAGAA
*
103529415 CATGGCATCGACCATATTATAAGAGCCAGTGTAAGACCATGTCTGGGGCATGGCATCAGTGTTGA
131 CATGGCATCGACCACATTATAAGAGCCAGTGTAAGACCATGTCTGGGGCATGGCATCAGTGTTGA
103529480 TATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATC-GCAT
196 TATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAT
* * * *
103529524 TGATATGTGTGCTAGTGTAAGATCATGTCTGGTACATGGCATCGGCCACATTATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAATA
*
103529589 TAAGACCATGTCTGGGACATGACATC
66 TAAGACCATGTCTGGGACATGGCATC
103529615 AACCTCGACG
Statistics
Matches: 552, Mismatches: 18, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
239 94 0.17
240 458 0.83
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (240 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAATA
TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCTAGTATAAGATCATGTCTAGAA
CATGGCATCGACCACATTATAAGAGCCAGTGTAAGACCATGTCTGGGGCATGGCATCAGTGTTGA
TATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAT
Found at i:103529985 original size:22 final size:22
Alignment explanation
Indices: 103529958--103530026 Score: 56
Period size: 22 Copynumber: 3.3 Consensus size: 22
103529948 TCAAGAATGT
103529958 TGTGTTGGTTTATAATATGCTA
1 TGTGTTGGTTTATAATATGCTA
*** *
103529980 TGTGTT-AAATA-AAGAATG-T-
1 TGTGTTGGTTTATAA-TATGCTA
*
103529999 TGTGCTGGTTTATAATATGCTA
1 TGTGTTGGTTTATAATATGCTA
103530021 TGTGTT
1 TGTGTT
103530027 TAAAGATTCA
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 5 0.16
20 8 0.25
21 8 0.25
22 11 0.34
ACGTcount: A:0.26, C:0.04, G:0.23, T:0.46
Consensus pattern (22 bp):
TGTGTTGGTTTATAATATGCTA
Found at i:103529998 original size:41 final size:41
Alignment explanation
Indices: 103529941--103530026 Score: 154
Period size: 41 Copynumber: 2.1 Consensus size: 41
103529931 AATCTACCAT
* *
103529941 TGTTAAATCAAGAATGTTGTGTTGGTTTATAATATGCTATG
1 TGTTAAATAAAGAATGTTGTGCTGGTTTATAATATGCTATG
103529982 TGTTAAATAAAGAATGTTGTGCTGGTTTATAATATGCTATG
1 TGTTAAATAAAGAATGTTGTGCTGGTTTATAATATGCTATG
103530023 TGTT
1 TGTT
103530027 TAAAGATTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.29, C:0.05, G:0.22, T:0.44
Consensus pattern (41 bp):
TGTTAAATAAAGAATGTTGTGCTGGTTTATAATATGCTATG
Found at i:103531081 original size:21 final size:21
Alignment explanation
Indices: 103531051--103531090 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
103531041 GTTAAGAGGA
*
103531051 CACACAGGCGTGTGGCCCTTC
1 CACACAGGCGTGTGCCCCTTC
*
103531072 CACACCGGCGTGTGCCCCT
1 CACACAGGCGTGTGCCCCT
103531091 ATTTGTATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.42, G:0.28, T:0.17
Consensus pattern (21 bp):
CACACAGGCGTGTGCCCCTTC
Found at i:103532698 original size:14 final size:14
Alignment explanation
Indices: 103532679--103532706 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
103532669 GTTGTGAGTT
103532679 CATAATTACTTATG
1 CATAATTACTTATG
103532693 CATAATTACTTATG
1 CATAATTACTTATG
103532707 TGATTGAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (14 bp):
CATAATTACTTATG
Found at i:103533170 original size:16 final size:16
Alignment explanation
Indices: 103533149--103533188 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
103533139 GATAAAAGAA
103533149 ATCATCTTATTTTTAT
1 ATCATCTTATTTTTAT
103533165 ATCATCTTATTTTTAT
1 ATCATCTTATTTTTAT
*
103533181 GTCATCTT
1 ATCATCTT
103533189 CAACCTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.23, C:0.15, G:0.03, T:0.60
Consensus pattern (16 bp):
ATCATCTTATTTTTAT
Found at i:103554929 original size:29 final size:29
Alignment explanation
Indices: 103554896--103555055 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
103554886 GTGACGAGAT
103554896 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
103554925 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
103554954 TGGCACTAAGTGTGCATGCTGGAAATTTA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
103554983 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
103555012 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
103555041 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
103555056 GAAATCGAGT
Statistics
Matches: 110, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 107 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:103560333 original size:37 final size:37
Alignment explanation
Indices: 103560277--103560416 Score: 226
Period size: 37 Copynumber: 3.8 Consensus size: 37
103560267 CGAATAGTCC
* *
103560277 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACATGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
103560314 CTAGATGTAGTCATCGGGTCTTACCCGGACAAAATCT
1 CCACATGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
103560351 CCACATGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACATGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
103560388 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACATGTAGTCATCGGGTCTTACCCGGA
103560417 ATATATTTCC
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (37 bp):
CCACATGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:103560643 original size:48 final size:48
Alignment explanation
Indices: 103560589--103560693 Score: 192
Period size: 48 Copynumber: 2.2 Consensus size: 48
103560579 GCCGAATCAC
*
103560589 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
103560637 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCATAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
103560685 TAGCCATTC
1 TAGCCATTC
103560694 TATCTCATAC
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.36
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:103560700 original size:30 final size:30
Alignment explanation
Indices: 103560664--103560723 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
103560654 CACATATACA
*
103560664 TATCTCATACATATTTCATATTAGCCATTC
1 TATCTCATACATATTTCACATTAGCCATTC
103560694 TATCTCATACATATTTCACATTAGCCATTC
1 TATCTCATACATATTTCACATTAGCCATTC
103560724 GGTTTTACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.03, T:0.42
Consensus pattern (30 bp):
TATCTCATACATATTTCACATTAGCCATTC
Found at i:103560737 original size:78 final size:78
Alignment explanation
Indices: 103560616--103560771 Score: 285
Period size: 78 Copynumber: 2.0 Consensus size: 78
103560606 CACATATACA
*
103560616 TATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
1 TATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
*
103560681 ATATTAGCCATTC
66 ACATTAGCCATTC
*
103560694 TATCTCATACATATTTCACATTAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTC
1 TATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
103560759 ACATTAGCCATTC
66 ACATTAGCCATTC
103560772 GGCTTTACCA
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 75 1.00
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (78 bp):
TATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
ACATTAGCCATTC
Found at i:103560749 original size:48 final size:48
Alignment explanation
Indices: 103560694--103560792 Score: 180
Period size: 48 Copynumber: 2.1 Consensus size: 48
103560684 TTAGCCATTC
*
103560694 TATCTCATACATATTTCACATTAGCCATTCGGTTTTACCACATATACA
1 TATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACA
*
103560742 TATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATA
1 TATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACA
103560790 TAT
1 TAT
103560793 ATATATTTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.38
Consensus pattern (48 bp):
TATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACA
Found at i:103565622 original size:68 final size:70
Alignment explanation
Indices: 103565550--103565747 Score: 285
Period size: 71 Copynumber: 2.8 Consensus size: 70
103565540 ACACCCTGTA
* * * *
103565550 GTAGCTAGGTCACATGTGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGTGTGATACCAAG-TGAAGGCACCATGTAGACAAGAGAGCTACGTGAAAG
103565612 ATAAAT
65 ATAAAT
*
103565618 GTAGCTAGGTCGCATGTGTGATTCCAAGTGAAGGGCACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGTGTGATACCAAGTGAA-GGCACCATGTAGACAAGAGAGCTACGTGAAAG
103565683 ATAAAT
65 ATAAAT
* *
103565689 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGTGTGATACCAAGTGAAGG-CACCATGTAGACAAGAGAGCTACG
103565748 AGACAAATCG
Statistics
Matches: 119, Mismatches: 6, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
68 24 0.20
69 3 0.03
70 3 0.03
71 89 0.75
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGTGTGATACCAAGTGAAGGCACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:103565673 original size:71 final size:71
Alignment explanation
Indices: 103565584--103565747 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
103565574 GAGATGTATC
*
103565584 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
103565649 AGGGCA
66 AGGACA
103565655 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
103565720 AGGACA
66 AGGACA
103565726 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
103565748 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.20
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:103567688 original size:27 final size:28
Alignment explanation
Indices: 103567631--103567700 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
103567621 AAACTTGTAC
*
103567631 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
103567659 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
103567686 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
103567701 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:103567711 original size:27 final size:27
Alignment explanation
Indices: 103567631--103567712 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
103567621 AAACTTGTAC
* * *
103567631 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
103567659 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
103567686 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
103567713 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:103570922 original size:40 final size:40
Alignment explanation
Indices: 103570877--103571006 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
103570867 CGGAATATAA
103570877 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
103570917 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
103570957 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
103570997 CCGGATATAA
1 CCGGATATAA
103571007 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:103571021 original size:40 final size:40
Alignment explanation
Indices: 103570893--103571044 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
103570883 ATAAGCATGT
* * *
103570893 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
103570933 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
103570973 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
103571013 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
103571045 CATTCAATTT
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:103571027 original size:80 final size:80
Alignment explanation
Indices: 103570893--103571044 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
103570883 ATAAGCATGT
* *
103570893 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
103570958 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
103570973 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
103571036 CCCGGATAT
64 CCCGGATAT
103571045 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:103577613 original size:42 final size:42
Alignment explanation
Indices: 103577533--103577614 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
103577523 CCAACTATGG
**
103577533 TCTTACACAAAGTCTCACATCGATGCCATATCTTAGATATTA
1 TCTTACACAAAGTCTCACATCGATGCCATATCCCAGATATTA
* * *
103577575 TCTTACACGAAA-TCTCATATTGATGTCATATCCCAGATAT
1 TCTTACAC-AAAGTCTCACATCGATGCCATATCCCAGATAT
103577615 GGTTTACACA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 31 0.91
43 3 0.09
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.34
Consensus pattern (42 bp):
TCTTACACAAAGTCTCACATCGATGCCATATCCCAGATATTA
Found at i:103585822 original size:51 final size:51
Alignment explanation
Indices: 103585764--103585861 Score: 178
Period size: 51 Copynumber: 1.9 Consensus size: 51
103585754 TTGAATGGAG
*
103585764 GCTTAGCTCACATTCCCTTATCTATCCAACATGTCTCAGGGCCTCAATGCT
1 GCTTAGCTCACATTCCCTTATCTATCCAACATGTCCCAGGGCCTCAATGCT
*
103585815 GCTTAGCTCACATTCCCTTATTTATCCAACATGTCCCAGGGCCTCAA
1 GCTTAGCTCACATTCCCTTATCTATCCAACATGTCCCAGGGCCTCAA
103585862 CACTGAAATC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.22, C:0.34, G:0.13, T:0.31
Consensus pattern (51 bp):
GCTTAGCTCACATTCCCTTATCTATCCAACATGTCCCAGGGCCTCAATGCT
Found at i:103587730 original size:45 final size:45
Alignment explanation
Indices: 103587645--103587878 Score: 287
Period size: 45 Copynumber: 5.2 Consensus size: 45
103587635 CCGGCATTTC
* * * *
103587645 GCCTGCTAGGCTC-GAGGCCC-AATA-TCATTTCACCGACATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCTCACCGGCATCATA
* * *
103587688 GCCTTCTAGGCTCGAAA-GCCTGAATAGTATCTCACCGGCATTATA
1 GCCTGCTAGGCTC-AAAGGCCCGAATAGTATCTCACCGGCATCATA
* *
103587733 GCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACTGGCATCATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATA
* *
103587778 GCCTGCTAGGCTCAAAGGCGCGAATAGTATTTCACCGGCATCATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATA
* * * *
103587823 GCTTGCTGGGCTCAAAGGCCCGAATAGTATTTCACTGGCATCATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATA
103587868 GCCTGCTAGGC
1 GCCTGCTAGGC
103587879 CCGAAGCCCG
Statistics
Matches: 166, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
43 12 0.07
44 6 0.04
45 147 0.89
46 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (45 bp):
GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATCATA
Found at i:103587788 original size:90 final size:91
Alignment explanation
Indices: 103587634--103587883 Score: 316
Period size: 90 Copynumber: 2.8 Consensus size: 91
103587624 TTCTCTAATG
* * * * * *
103587634 ACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCC-AAT-ATCATTTCACCGACATTATAGCCTTCT
1 ACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT-ATTTCACTGGCATCATAGCCTGCT
103587695 AGGCTCGAAA-GC-CTGAATAGTATCTC
65 AGGCTCGAAAGGCGC-GAATAGTATCTC
*
103587721 ACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACTGGCATCATAGCCTGCTA
1 ACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATTTCACTGGCATCATAGCCTGCTA
*
103587786 GGCTC-AAAGGCGCGAATAGTATTTC
66 GGCTCGAAAGGCGCGAATAGTATCTC
* * * *
103587811 ACCGGCATCATAGCTTGCTGGGCTCAAAGGCCCGAATAGTATTTCACTGGCATCATAGCCTGCTA
1 ACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATTTCACTGGCATCATAGCCTGCTA
*
103587876 GGCCCGAA
66 GGCTCGAA
103587884 GCCCGATATC
Statistics
Matches: 142, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
87 9 0.06
88 14 0.10
89 9 0.06
90 105 0.74
91 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (91 bp):
ACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATTTCACTGGCATCATAGCCTGCTA
GGCTCGAAAGGCGCGAATAGTATCTC
Found at i:103590211 original size:40 final size:40
Alignment explanation
Indices: 103590033--103590235 Score: 203
Period size: 40 Copynumber: 5.1 Consensus size: 40
103590023 CGGAATACAA
* * *
103590033 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
103590073 CCGGATATAACGAGTTGCACAAATGCCTTCGGGTGTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
* *
103590113 CCGGATTTAACAACTTGCACTAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
103590153 CCGGATGTAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTTGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
103590193 CTGGATATAATTA-TTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACTT-GCACAAATGCCTTCGGGTCTTAGC
103590233 CCG
1 CCG
103590236 AATGTCATTC
Statistics
Matches: 133, Mismatches: 27, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 131 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:103595779 original size:40 final size:40
Alignment explanation
Indices: 103595695--103595860 Score: 146
Period size: 40 Copynumber: 4.2 Consensus size: 40
103595685 AAATTGAATG
* * *
103595695 ATATCCGGGCTAAG-CCCGAAGACAATATGCTG-GA--AATT
1 ATATCCGGGCTAAGACCCGAAGGCAAT-TG-TGCGAGTGACT
* * *
103595733 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
* * *
103595773 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGACT
* * *
103595813 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGACT
103595853 ATATCCGG
1 ATATCCGG
103595861 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
37 2 0.02
38 16 0.15
39 15 0.14
40 69 0.66
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGACT
Found at i:103604361 original size:27 final size:28
Alignment explanation
Indices: 103604331--103604400 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
103604321 ATAATAAGTC
*
103604331 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
103604358 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
103604386 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
103604401 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:103611809 original size:43 final size:43
Alignment explanation
Indices: 103611728--103611811 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
103611718 AAATCGTACA
*
103611728 ATGCCAACGTCCCAGACGTGGTCTTACATGTAACCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
*
103611771 ATGCC-ACTGTCCCAGACAG-GGTTTTAC-TCGTAAACACATAT
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACAT-GTAAACACATAT
103611812 TGGAACCACA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
42 3 0.08
43 32 0.89
44 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
Found at i:103624892 original size:29 final size:29
Alignment explanation
Indices: 103624859--103624960 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
103624849 GTGACAAGAT
*
103624859 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
103624888 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
103624917 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
103624946 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
103624961 GAGCTCGAAG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:103624976 original size:29 final size:30
Alignment explanation
Indices: 103624854--103624990 Score: 140
Period size: 29 Copynumber: 4.7 Consensus size: 30
103624844 GTACGGTGAC
*
103624854 AAGAT-TGGCACTAAGTGTGC-ATGCTGGA
1 AAGATATGGCACTAAGTGTGCGATGCTCGA
* * *
103624882 AAAATATGGCACTGAGTGTGC-ATGCTGGA
1 AAGATATGGCACTAAGTGTGCGATGCTCGA
* *
103624911 AATATATGGCACTAAGTGTGC-ATGCTGGA
1 AAGATATGGCACTAAGTGTGCGATGCTCGA
*
103624940 AATATATGGCACTAAGTGTGCGA-GCTCGA
1 AAGATATGGCACTAAGTGTGCGATGCTCGA
* * **
103624969 AGGGTATGGCACTGTGTGTGCG
1 AAGATATGGCACTAAGTGTGCG
103624991 GGCTTAGATC
Statistics
Matches: 97, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 4 0.04
29 92 0.95
30 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.26
Consensus pattern (30 bp):
AAGATATGGCACTAAGTGTGCGATGCTCGA
Found at i:103624989 original size:58 final size:58
Alignment explanation
Indices: 103624854--103624981 Score: 179
Period size: 58 Copynumber: 2.2 Consensus size: 58
103624844 GTACGGTGAC
* *
103624854 AAGAT-TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTGAGTGTGCATGCTGGA
1 AAGATATGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTAAGTGTGCATGCTCGA
* *
103624911 AATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGA
1 AAGATATGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTAAGTGTGC-ATGCTCGA
* *
103624969 AGGGTATGGCACT
1 AAGATATGGCACT
103624982 GTGTGTGCGG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
57 4 0.06
58 57 0.92
59 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.25
Consensus pattern (58 bp):
AAGATATGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTAAGTGTGCATGCTCGA
Found at i:103626934 original size:29 final size:29
Alignment explanation
Indices: 103626902--103626957 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
103626892 ATTTAATACG
103626902 AACTTTGGAAAAATTACACTTTTGCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCTA
* * *
103626931 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGAAAAATTACACTTTTGCCC
103626958 CTAGGCTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTGCCCTA
Found at i:103633928 original size:46 final size:44
Alignment explanation
Indices: 103633861--103634030 Score: 202
Period size: 46 Copynumber: 3.8 Consensus size: 44
103633851 AACCCGCCCC
*
103633861 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT--CATCCA
103633907 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTT-CATCCA
* * * *
103633955 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCATCCA
103633998 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
103634031 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
41 3 0.03
42 3 0.03
43 2 0.02
44 29 0.27
46 32 0.30
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCATCCA
Found at i:103634023 original size:91 final size:92
Alignment explanation
Indices: 103633866--103634034 Score: 295
Period size: 91 Copynumber: 1.8 Consensus size: 92
103633856 GCCCCTAAGT
* *
103633866 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTC-CATCCATAAGTGAACTCGGACTCAACTCAA
103633931 CGAGTTCGGATGCCTAGTTACATCTCAC
65 CGAGTTCGGATGCCTAGTTACATCTCAC
*
103633959 GAACTCGGACTCAACTCAACGAGTTCGGACATT-CATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCCATCCATAAGTGAACTCGGACTCAACTCAAC
103634023 GAGTTCGGATGC
66 GAGTTCGGATGC
103634035 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 43 0.59
93 30 0.41
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:103634487 original size:30 final size:30
Alignment explanation
Indices: 103634453--103634512 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
103634443 ATTTAATACG
103634453 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
103634483 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
103634513 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:103639015 original size:40 final size:40
Alignment explanation
Indices: 103638970--103639136 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
103638960 CGGAATATAA
103638970 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
103639010 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
103639050 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
103639090 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
103639129 CCGGATAT
1 CCGGATAT
103639137 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 14 0.14
40 88 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:103639120 original size:80 final size:79
Alignment explanation
Indices: 103638986--103639134 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
103638976 ATAACCACGT
*
103638986 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
103639051 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
103639066 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
103639129 CCGGAT
64 CCGGAT
103639135 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:103647025 original size:40 final size:40
Alignment explanation
Indices: 103646980--103647147 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
103646970 CGGAATATAA
103646980 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
103647020 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
103647060 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
103647100 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
103647140 CCGGATAT
1 CCGGATAT
103647148 CATTCAATTT
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:103647130 original size:80 final size:80
Alignment explanation
Indices: 103646996--103647145 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
103646986 ATAACCACGT
* *
103646996 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
103647061 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
103647076 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
103647139 CCCGGAT
64 CCCGGAT
103647146 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:103648891 original size:39 final size:39
Alignment explanation
Indices: 103648808--103648883 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 39
103648798 ATTTTGGNAA
* *
103648808 CCGGATTTAGTAACTCGCATAAAGCCTTTGGGACTTAAC
1 CCGGATTTAGTAACTCGCATAAAGCCTTTCGGACCTAAC
*
103648847 CCGGATTTAGTAACTCGCATAATGCC-TTCGGATCCTA
1 CCGGATTTAGTAACTCGCATAAAGCCTTTCGGA-CCTA
103648884 GTCCGGATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 5 0.15
39 28 0.85
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTAACTCGCATAAAGCCTTTCGGACCTAAC
Found at i:103656932 original size:39 final size:40
Alignment explanation
Indices: 103656813--103656991 Score: 195
Period size: 40 Copynumber: 4.5 Consensus size: 40
103656803 TCATTCAAAC
* * * * *
103656813 GCCTTCGGGACATAGCCCGG-TTATGGCAACTCGCGTAAAC
1 GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCATAAAT
*
103656853 GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCATAAAT
*
103656893 GCCTTCGGGACTTAACCCGGATTT-GTAACTCGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCATAAAT
* * * * * *
103656932 GCCTTC-GGATCCTAGTCCGGATATAGTCACTAGCACAAA-
1 GCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCATAAAT
103656971 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
103656992 CATCATTTGA
Statistics
Matches: 120, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
38 3 0.03
39 46 0.38
40 69 0.57
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCATAAAT
Found at i:103656936 original size:79 final size:80
Alignment explanation
Indices: 103656808--103656991 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 80
103656798 GCTACTCATT
* * *
103656808 CAAACGCCTTCGGGACATAGCCCGG-TTATGGCAACTCGCGTAAACGCCTTCGGGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGATTATGGCAACTCGCATAAACGCCTTC-GGATCCTAACCC
* *
103656871 GGATTTAGTAACTCGCA
64 GGATATAGTAACTAGCA
* * * * **
103656888 TAAATGCCTTCGGGACTTAACCCGGATT-T-GTAACTCGCATAAATGCCTTCGGATCCTAGTCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATTATGGCAACTCGCATAAACGCCTTCGGATCCTAACCCG
*
103656951 GATATAGTCACTAGCA
65 GATATAGTAACTAGCA
103656967 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
103656992 CATCATTTGA
Statistics
Matches: 87, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
78 23 0.26
79 40 0.46
80 22 0.25
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTATGGCAACTCGCATAAACGCCTTCGGATCCTAACCCGG
ATATAGTAACTAGCA
Found at i:103663805 original size:48 final size:48
Alignment explanation
Indices: 103663731--103663964 Score: 251
Period size: 48 Copynumber: 4.9 Consensus size: 48
103663721 TAAAATGGCA
* * * *
103663731 ATGCCATGGCCCAGACATGGTTTTACACTAGCTCACATGTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * * *
103663779 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
* ***
103663827 ATGCCATG-CCCTAGACATGGTCTTACACTAGCAT-ACATATCAACGATA
1 ATGCCATGTCCC-AGACATGGTCTTACACTAGC-TCACATATCAAGGCCG
* ** *
103663875 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAAT-ATGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCAAGGCCG
*
103663923 ATGCCATGTCCCGGACATGGTCTTACACTAGCAT-ACATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC-TCACATATCA
103663965 CCCAAATGTC
Statistics
Matches: 156, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
47 6 0.04
48 143 0.92
49 7 0.04
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAGGCCG
Found at i:103663895 original size:96 final size:95
Alignment explanation
Indices: 103663731--103663964 Score: 285
Period size: 96 Copynumber: 2.4 Consensus size: 95
103663721 TAAAATGGCA
* * * * * *
103663731 ATGCCATGGCCCAGACATGGTTTTACACTAGC-TCACATGTCGAGGCCGATGCCATGTCCCAGAC
1 ATGCCAT-GCCCAGACATGGTCTTACACTAGCAT-ACATATCAACGACAATGCCATGTCCCAGAC
* *
103663795 ATGGTCTTACACTAGCTCTCGT-GTCAAT-GCCG
64 ATGGTCTTACACTAGCTCTCATAAT--ATGGCCG
*
103663827 ATGCCATGCCCTAGACATGGTCTTACACTAGCATACATATCAACGATAATGCCATGTCCCAGACA
1 ATGCCATGCCC-AGACATGGTCTTACACTAGCATACATATCAACGACAATGCCATGTCCCAGACA
* *
103663892 TGGTCTTACACTGGCTTTCATAATATGGCCG
65 TGGTCTTACACTAGCTCTCATAATATGGCCG
*
103663923 ATGCCATGTCCCGGACATGGTCTTACACTAGCATACATATCA
1 ATGCCATG-CCCAGACATGGTCTTACACTAGCATACATATCA
103663965 CCCAAATGTC
Statistics
Matches: 121, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
95 6 0.05
96 110 0.91
97 5 0.04
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (95 bp):
ATGCCATGCCCAGACATGGTCTTACACTAGCATACATATCAACGACAATGCCATGTCCCAGACAT
GGTCTTACACTAGCTCTCATAATATGGCCG
Found at i:103666516 original size:13 final size:14
Alignment explanation
Indices: 103666492--103666520 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
103666482 ATTTATCTAA
103666492 TTACTAAATTAACC
1 TTACTAAATTAACC
103666506 TTACT-AATTAACC
1 TTACTAAATTAACC
103666519 TT
1 TT
103666521 TAAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (14 bp):
TTACTAAATTAACC
Found at i:103671295 original size:14 final size:14
Alignment explanation
Indices: 103671269--103671307 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
103671259 TTGTTTCATT
*
103671269 GAAAATGACTTCCA
1 GAAAATGATTTCCA
* *
103671283 GAAATTGATTTCCG
1 GAAAATGATTTCCA
103671297 GAAAATGATTT
1 GAAAATGATTT
103671308 ATTTTTCTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (14 bp):
GAAAATGATTTCCA
Found at i:103671790 original size:15 final size:15
Alignment explanation
Indices: 103671770--103671821 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
103671760 ACTACAAAAC
103671770 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
103671785 ATTTATAATTATAATAAAT
1 ATTTATTA-T-TAAT--AT
*
103671804 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
103671819 ATT
1 ATT
103671822 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:103671807 original size:19 final size:19
Alignment explanation
Indices: 103671783--103671819 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
103671773 TATTATTAAT
*
103671783 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
103671802 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
103671820 TTAATATTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:103671942 original size:22 final size:22
Alignment explanation
Indices: 103671902--103671957 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
103671892 AATAAAATTG
*
103671902 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
103671922 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
103671944 TATTAATAATTTAT
1 AAATAATAAATTAT
103671958 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:103672231 original size:19 final size:19
Alignment explanation
Indices: 103672207--103672243 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
103672197 CCTGTAAGTC
*
103672207 ATTTTCCGTGAACCAAACT
1 ATTTTCCGTGAAACAAACT
*
103672226 ATTTTCTGTGAAACAAAC
1 ATTTTCCGTGAAACAAAC
103672244 AAAAAAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.32
Consensus pattern (19 bp):
ATTTTCCGTGAAACAAACT
Found at i:103672371 original size:2 final size:2
Alignment explanation
Indices: 103672364--103672396 Score: 57
Period size: 2 Copynumber: 16.0 Consensus size: 2
103672354 GATTAAATCA
103672364 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
103672397 TATGCAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 28 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:103676952 original size:43 final size:42
Alignment explanation
Indices: 103676905--103676986 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
103676895 CTTACATGGG
** *
103676905 ATCTCATATCGATGCCAATAGCCCAGCTATGGTCTTACACTAA
1 ATCTCATAAAGATGCC-ATAGCCCAGATATGGTCTTACACTAA
* *
103676948 ATCTCATAAAGATGTCATATCCCAGATATGGTCTTACAC
1 ATCTCATAAAGATGCCATAGCCCAGATATGGTCTTACAC
103676987 GTAATCTTAG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
42 21 0.62
43 13 0.38
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (42 bp):
ATCTCATAAAGATGCCATAGCCCAGATATGGTCTTACACTAA
Found at i:103682190 original size:42 final size:42
Alignment explanation
Indices: 103682080--103682206 Score: 134
Period size: 42 Copynumber: 3.0 Consensus size: 42
103682070 GACATCTGTC
* * *
103682080 TGAGATATCGTGTAAGATCGTGTCTGGGACACAGGCCTCGAT
1 TGAGATTTCGTGTAAGATCATGTCTGGGACACAGGCATCGAT
*
103682122 TGAGATTTACGTATAAGATCATGTCTGGGACATCA-GCATCGTAT
1 TGAGATTT-CGTGTAAGATCATGTCTGGGACA-CAGGCATCG-AT
* * *
103682166 CT-A-ATTTCGTGTAAGACCCTGTCTGGGACAGAGGCATCGAT
1 -TGAGATTTCGTGTAAGATCATGTCTGGGACACAGGCATCGAT
103682207 ATTAAATTAC
Statistics
Matches: 72, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
41 3 0.04
42 33 0.46
43 30 0.42
44 5 0.07
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (42 bp):
TGAGATTTCGTGTAAGATCATGTCTGGGACACAGGCATCGAT
Found at i:103686682 original size:64 final size:64
Alignment explanation
Indices: 103686516--103686688 Score: 186
Period size: 68 Copynumber: 2.6 Consensus size: 64
103686506 TGGATGATAC
* * * * *
103686516 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGTGTACAAGAGAGCTACA
1 AGATA-TATGTAGCTAGGTCGCATGTGT-GTACTAAGTGCACACCATGTATACAAGAGAGCTAC-
103686581 AG
63 AG
* * * *
103686583 ACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTATACAAGAGAGCTAC
1 AGA-TAT-ATGTAGCTAGGTCGCATGTGTG-TACTAAGTGCACACCATGTATACAAGAGAGCTAC
103686648 -G
63 AG
*
103686649 GGATATATGTAGCTAGGTCGCATGTGTAGTACTAAGTGCA
1 AGATATATGTAGCTAGGTCGCATGTGT-GTACTAAGTGCA
103686689 GGCTACTATG
Statistics
Matches: 88, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
64 29 0.33
65 4 0.05
66 2 0.02
67 4 0.05
68 49 0.56
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGTGTGTACTAAGTGCACACCATGTATACAAGAGAGCTACAG
Found at i:103686731 original size:51 final size:49
Alignment explanation
Indices: 103686669--103686809 Score: 183
Period size: 49 Copynumber: 2.8 Consensus size: 49
103686659 AGCTAGGTCG
* *
103686669 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATAA-TT-GATCA
* * ** * *
103686720 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATAATTGATCA
*
103686769 TATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATA
103686810 GTTTGGCTAC
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 39 0.50
50 2 0.03
51 37 0.47
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATAATTGATCA
Found at i:103686794 original size:49 final size:51
Alignment explanation
Indices: 103686664--103686809 Score: 197
Period size: 51 Copynumber: 2.9 Consensus size: 51
103686654 TATGTAGCTA
*
103686664 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAACTTC
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCAATAACTTC
* * * * **
103686715 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT-
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCAATAACTTC
* *
103686764 GGTCGTATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCAATA
103686810 GTTTGGCTAC
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 39 0.48
50 2 0.02
51 40 0.49
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCAATAACTTC
Found at i:103696234 original size:52 final size:51
Alignment explanation
Indices: 103696138--103696375 Score: 196
Period size: 51 Copynumber: 4.7 Consensus size: 51
103696128 GTTGTGAGAA
* * * *
103696138 CACATGTGTAATAC-AATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAA-GTGCAGGCTACTATGTGTATCAGATGG-TTTAGGT
* * *
103696190 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATGG-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTTAGGT
* * * * *
103696240 CGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGCTTTA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGAT-GGTTTAGGT
* * * ** *
103696291 CACATGTGTGGTACTAAGTACAGGCCACTATGTGTAAAAGATAGCTTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGAT-GGTTTAGGT
* * * * * *
103696342 CACAAGTGTGGTACTATGTGAAGGCCACTTTGTG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG
103696376 AAGAAGGTAG
Statistics
Matches: 155, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
50 43 0.28
51 73 0.47
52 37 0.24
53 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTTAGGT
Found at i:103696321 original size:51 final size:51
Alignment explanation
Indices: 103696242--103696421 Score: 159
Period size: 51 Copynumber: 3.5 Consensus size: 51
103696232 GGTTAGGTCG
* * * ***
103696242 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAGCTTTAATCA
1 CATGTGTGGTACTAAGTACAGGCCACTATGTGTAAAAGATAGCTTTAATCA
**
103696293 CATGTGTGGTACTAAGTACAGGCCACTATGTGTAAAAGATAGCTTTGGTCA
1 CATGTGTGGTACTAAGTACAGGCCACTATGTGTAAAAGATAGCTTTAATCA
* * * * *
103696344 CAAGTGTGGTACTATGTGA-AGGCCACTTTGTG-AAGAAGGTAGCTTTGA-CTA
1 CATGTGTGGTACTAAGT-ACAGGCCACTATGTGTAA-AAGATAGCTTTAATC-A
* * * *
103696395 CAAGGGTGGTACTATGTGCAGGCCACT
1 CATGTGTGGTACTAAGTACAGGCCACT
103696422 GGGCATCCGT
Statistics
Matches: 110, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
50 3 0.03
51 106 0.96
52 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (51 bp):
CATGTGTGGTACTAAGTACAGGCCACTATGTGTAAAAGATAGCTTTAATCA
Found at i:103700874 original size:12 final size:12
Alignment explanation
Indices: 103700854--103700885 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
103700844 ATATGCATAT
103700854 ATACTTAAACCA
1 ATACTTAAACCA
*
103700866 ATTCTTAAACCA
1 ATACTTAAACCA
103700878 ATACTTAA
1 ATACTTAA
103700886 GCCATTTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.31
Consensus pattern (12 bp):
ATACTTAAACCA
Found at i:103703583 original size:15 final size:15
Alignment explanation
Indices: 103703563--103703594 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
103703553 ATTCATTCCT
103703563 TATGTGGTTATCTTG
1 TATGTGGTTATCTTG
103703578 TATGTGGTTATCTTG
1 TATGTGGTTATCTTG
103703593 TA
1 TA
103703595 ATACCCTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.16, C:0.06, G:0.25, T:0.53
Consensus pattern (15 bp):
TATGTGGTTATCTTG
Found at i:103705654 original size:39 final size:39
Alignment explanation
Indices: 103705610--103705738 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
103705600 CGGAATACAA
103705610 CCGGATATAACACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
103705649 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-CACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
103705689 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACACTAGCACGAA-TGCCTTCGGGTCTTAGC
103705729 CCGGATATAA
1 CCGGATATAA
103705739 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
39 12 0.16
40 64 0.84
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:103713681 original size:40 final size:40
Alignment explanation
Indices: 103713636--103713765 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
103713626 CGGAATACAA
103713636 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
103713676 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
103713716 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
103713756 CCGGATATAA
1 CCGGATATAA
103713766 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:103713780 original size:40 final size:40
Alignment explanation
Indices: 103713636--103713803 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
103713626 CGGAATACAA
* **
103713636 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
103713676 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
103713716 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
103713756 CCGGATATAATTTCCAGCATAATTGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
103713796 CCGGATAT
1 CCGGATAT
103713804 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 102 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:103719769 original size:40 final size:40
Alignment explanation
Indices: 103719567--103719774 Score: 233
Period size: 40 Copynumber: 5.2 Consensus size: 40
103719557 TGAATGATAC
* * *
103719567 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
103719607 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
103719647 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* ** *
103719687 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * *
103719727 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
103719767 CC-GGCTAA
1 CCGGGCTAA
103719775 ATTCCGAAGA
Statistics
Matches: 145, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.04
40 137 0.94
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:103727786 original size:40 final size:40
Alignment explanation
Indices: 103727584--103727791 Score: 233
Period size: 40 Copynumber: 5.2 Consensus size: 40
103727574 TGAATGATAC
* * *
103727584 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
103727624 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
103727664 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* ** *
103727704 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * *
103727744 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
103727784 CC-GGCTAA
1 CCGGGCTAA
103727792 ATTCCGAAGA
Statistics
Matches: 145, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.04
40 137 0.94
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:103735095 original size:13 final size:13
Alignment explanation
Indices: 103735077--103735101 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103735067 AAAGCACGAC
103735077 TCACACAGGCGTG
1 TCACACAGGCGTG
103735090 TCACACAGGCGT
1 TCACACAGGCGT
103735102 ATCCCTGCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.32, G:0.28, T:0.16
Consensus pattern (13 bp):
TCACACAGGCGTG
Found at i:103736607 original size:26 final size:25
Alignment explanation
Indices: 103736578--103736722 Score: 132
Period size: 26 Copynumber: 5.6 Consensus size: 25
103736568 TTAGTTTACC
103736578 AAATTACTGAAATATCCCCAG-TTGTA
1 AAATTACTGAAATA-CCCC-GTTTGTA
** *
103736604 AAATTACCAAAATACCCCCAGTTTATA
1 AAATTACTGAAATA-CCCC-GTTTGTA
* * *
103736631 AAATTACCGAAATACCGTCGATTGTA
1 AAATTACTGAAATACC-CCGTTTGTA
103736657 AAATTACTGAAATACCCTCGTTTTGTA
1 AAATTACTGAAATACCC-CG-TTTGTA
** *
103736684 AAATTACCAAAATA-CCCTTTTGTA
1 AAATTACTGAAATACCCCGTTTGTA
103736708 AAATTACTGAAATAC
1 AAATTACTGAAATAC
103736723 TCCTGTAAGA
Statistics
Matches: 98, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
24 18 0.18
25 1 0.01
26 44 0.45
27 35 0.36
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (25 bp):
AAATTACTGAAATACCCCGTTTGTA
Found at i:103736643 original size:53 final size:52
Alignment explanation
Indices: 103736578--103736714 Score: 136
Period size: 53 Copynumber: 2.6 Consensus size: 52
103736568 TTAGTTTACC
*
103736578 AAATTACTGAAATATCCCCAGTTGTAAAATTACCAAAATACCCCCAG-TTTATA
1 AAATTACCGAAATATCCCC-GTTGTAAAATTACCAAAATACCCCC-GTTTTATA
* ** * *
103736631 AAATTACCGAAATA-CCGTCGATTGTAAAATTACTGAAATACCCTCGTTTTGTA
1 AAATTACCGAAATATCC-CCG-TTGTAAAATTACCAAAATACCCCCGTTTTATA
* **
103736684 AAATTACCAAAATA-CCCTTTTGTAAAATTAC
1 AAATTACCGAAATATCCCCGTTGTAAAATTAC
103736715 TGAAATACTC
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
51 12 0.17
52 4 0.06
53 55 0.77
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (52 bp):
AAATTACCGAAATATCCCCGTTGTAAAATTACCAAAATACCCCCGTTTTATA
Found at i:103736701 original size:27 final size:26
Alignment explanation
Indices: 103736599--103736995 Score: 145
Period size: 27 Copynumber: 14.9 Consensus size: 26
103736589 ATATCCCCAG
*
103736599 TTGTAAAATTACCAAAATACCCCCAGT
1 TTGTAAAATTACCAAAATACCCTC-GT
* * * *
103736626 TTATAAAATTACCGAAATACCGTCGA
1 TTGTAAAATTACCAAAATACCCTCGT
**
103736652 TTGTAAAATTACTGAAATACCCTCGTT
1 TTGTAAAATTACCAAAATACCCTCG-T
103736679 TTGTAAAATTACCAAAATACCCT--T
1 TTGTAAAATTACCAAAATACCCTCGT
**
103736703 TTGTAAAATTACTGAAATACTCCT-GT
1 TTGTAAAATTACCAAAATAC-CCTCGT
** * *** * *
103736729 AAGATAGAATTACCATTTTACCCTTGA
1 TTG-TAAAATTACCAAAATACCCTCGT
* ****
103736756 TT-TACAGAATTATCGTTTTACCCTCGAT
1 TTGTA-A-AATTACCAAAATACCCTCG-T
* * ***
103736784 TTATAGAATTACCATTTTACCCTCGAT
1 TTGTAAAATTACCAAAATACCCTCG-T
* * *****
103736811 TTATAGAATTACTGTTTTACCCTCGAT
1 TTGTAAAATTACCAAAATACCCTCG-T
** ***
103736838 TTACAAAATTACCATTTTACCCTCGAT
1 TTGTAAAATTACCAAAATACCCTCG-T
** * * *
103736865 TTACAAAATTACTAAAATACCTTTGGT
1 TTGTAAAATTACCAAAATACC-CTCGT
**
103736892 TTACAAAATTACCAAAATACCCTCGAT
1 TTGTAAAATTACCAAAATACCCTCG-T
*** *
103736919 CAATAAAATTACCAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCC-TCGT
**
103736946 TTGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACCAAAATA-CCCTCGT
* * *
103736973 TTGTGAAATTATCGAAATACCCT
1 TTGTAAAATTACCAAAATACCCT
103736996 TGTAGGGTAG
Statistics
Matches: 298, Mismatches: 59, Indels: 27
0.78 0.15 0.07
Matches are distributed among these distances:
24 19 0.06
25 5 0.02
26 34 0.11
27 229 0.77
28 9 0.03
29 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.34
Consensus pattern (26 bp):
TTGTAAAATTACCAAAATACCCTCGT
Found at i:103736753 original size:51 final size:51
Alignment explanation
Indices: 103736599--103736743 Score: 134
Period size: 53 Copynumber: 2.8 Consensus size: 51
103736589 ATATCCCCAG
** * * * **
103736599 TTGTAAAATTACCAAAATACCCCCAGTTTA-TAAAATTACCGAAATACCGTCGA
1 TTGTAAAATTACTGAAATACCCTC-GTTAAGTAAAATTACCAAAATACC--CTT
**
103736652 TTGTAAAATTACTGAAATACCCTCGTTTTGTAAAATTACCAAAATACCCTT
1 TTGTAAAATTACTGAAATACCCTCGTTAAGTAAAATTACCAAAATACCCTT
*
103736703 TTGTAAAATTACTGAAATACTCCT-G-TAAGATAGAATTACCA
1 TTGTAAAATTACTGAAATAC-CCTCGTTAAG-TAAAATTACCA
103736744 TTTTACCCTT
Statistics
Matches: 79, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
50 2 0.03
51 32 0.41
52 7 0.09
53 38 0.48
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (51 bp):
TTGTAAAATTACTGAAATACCCTCGTTAAGTAAAATTACCAAAATACCCTT
Found at i:103736794 original size:54 final size:54
Alignment explanation
Indices: 103736732--103736877 Score: 231
Period size: 54 Copynumber: 2.7 Consensus size: 54
103736722 CTCCTGTAAG
*
103736732 ATAGAATTACCATTTTACCCTTGATTTACAGAATTA-TCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACT-GTTTTACCCTCGATTT
*
103736786 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTT
* * *
103736840 ACAAAATTACCATTTTACCCTCGATTTACAAAATTACT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACT
103736878 AAAATACCTT
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
54 84 0.99
55 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTT
Found at i:103736895 original size:54 final size:54
Alignment explanation
Indices: 103736790--103736959 Score: 187
Period size: 54 Copynumber: 3.1 Consensus size: 54
103736780 CGATTTATAG
* **** * *
103736790 AATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAA
* *
103736844 AATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCTTTGGTTTACAA
1 AATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAA
*** ** * **
103736898 AATTACCAAAATACCCTCGATCAATAAAATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAA
103736952 AATTACCA
1 AATTACCA
103736960 AAATACCCCT
Statistics
Matches: 97, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 97 1.00
ACGTcount: A:0.37, C:0.22, G:0.06, T:0.35
Consensus pattern (54 bp):
AATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAA
Found at i:103736902 original size:81 final size:81
Alignment explanation
Indices: 103736744--103736903 Score: 185
Period size: 81 Copynumber: 2.0 Consensus size: 81
103736734 AGAATTACCA
* * * * * * ***
103736744 TTTTACCCTTGATTTACAGAATTATCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCG
1 TTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCAAAATACCCTCG
* *
103736809 ATTTATAGAATTACTG
66 ATTTACAAAATTACTG
* * *
103736825 TTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCTTTG
1 TTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCAAAATACCCTCG
*
103736890 GTTTACAAAATTAC
66 ATTTACAAAATTAC
103736904 CAAAATACCC
Statistics
Matches: 64, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 64 1.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (81 bp):
TTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCAAAATACCCTCG
ATTTACAAAATTACTG
Found at i:103737009 original size:27 final size:27
Alignment explanation
Indices: 103736979--103737189 Score: 341
Period size: 27 Copynumber: 7.8 Consensus size: 27
103736969 TAATTTGTGA
*
103736979 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
103737006 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
103737033 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
103737060 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
103737087 AATTATCGTAATACCCCTGGAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
103737114 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
103737141 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
103737168 AGTTATCGTAATACCCCTGTAG
1 AATTATCGAAATACCCCTGTAG
103737190 ACCAAAATAC
Statistics
Matches: 172, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 172 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.26
Consensus pattern (27 bp):
AATTATCGAAATACCCCTGTAGGGTAG
Found at i:103737736 original size:22 final size:22
Alignment explanation
Indices: 103737672--103737736 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
103737662 TTAAAGCCTT
* *
103737672 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
* * *
103737694 CT-ACATATGGCTCTATACCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
103737716 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
103737737 ACGTATTTGC
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
21 1 0.03
22 30 0.94
23 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:103737932 original size:26 final size:27
Alignment explanation
Indices: 103737897--103737968 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
103737887 TCTGTTAAGT
* *
103737897 GGCTTTGCCACATTATCTGT-TCTGGC
1 GGCTCTGCCACAATATCTGTATCTGGC
*
103737923 GGCTCTGCCACAATATCTGTATCTGGT
1 GGCTCTGCCACAATATCTGTATCTGGC
* *
103737950 GACTCTGTCACAATATCTG
1 GGCTCTGCCACAATATCTG
103737969 ATAACTGAGC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 18 0.45
27 22 0.55
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.35
Consensus pattern (27 bp):
GGCTCTGCCACAATATCTGTATCTGGC
Found at i:103738136 original size:6 final size:6
Alignment explanation
Indices: 103738105--103738314 Score: 169
Period size: 6 Copynumber: 34.3 Consensus size: 6
103738095 TTACATTCAC
* * * * *
103738105 ATTCTG ATTTTG ATTATG -TTACCTG ATACTG ATTCTG ATTTTG ATCCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
103738154 -TTACCTG ATACTG ATTCTG ATTTTG ATTCAG -TTACCTG ATACTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * * *
103738204 ATTCTG ATTCT- ATCACCTA ATTCTA ATTTTG ATTTTG ATTCTG GTTCTG
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
103738253 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
103738301 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
103738315 AATGTTCTTA
Statistics
Matches: 166, Mismatches: 24, Indels: 28
0.76 0.11 0.13
Matches are distributed among these distances:
5 8 0.05
6 143 0.86
7 10 0.06
8 5 0.03
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:103738141 original size:31 final size:31
Alignment explanation
Indices: 103738105--103738305 Score: 230
Period size: 31 Copynumber: 6.5 Consensus size: 31
103738095 TTACATTCAC
*
103738105 ATTCTGATTTTGATTATGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
103738136 ATTCTGATTTTGATCCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
103738167 ATTCTGATTTTGATTCAGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * * * *
103738198 ATTCTGATTCTGATTCTATCACCTAATTCTA
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
103738229 ATTTTGATTTTGATTCTGGTT--CTGATTCTG
1 ATTCTGATTTTGATTCT-GTTACCTGATACTG
* *
103738259 ATTCTGATTCTGATTCTGATT--CTGATTCTG
1 ATTCTGATTTTGATTCTG-TTACCTGATACTG
*
103738289 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
103738306 AGTTCTGATA
Statistics
Matches: 149, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
29 1 0.01
30 50 0.34
31 97 0.65
32 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:103740776 original size:50 final size:50
Alignment explanation
Indices: 103740701--103740926 Score: 244
Period size: 50 Copynumber: 4.5 Consensus size: 50
103740691 TGAGTACACG
* *
103740701 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
* * ** *
103740751 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GACTGTTAAGTCACA
* * * **
103740802 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTAAGTCACA
* * *
103740852 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
*
103740901 TGTGTAGTACTAAGTACAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
103740927 TGCGTATCAG
Statistics
Matches: 149, Mismatches: 20, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 31 0.21
50 74 0.50
51 35 0.23
52 3 0.02
53 3 0.02
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
Found at i:103740872 original size:101 final size:98
Alignment explanation
Indices: 103740697--103740938 Score: 281
Period size: 101 Copynumber: 2.4 Consensus size: 98
103740687 ATTATGAGTA
* * * *
103740697 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGTGAAGTCACATGTGTAGTACT
*
103740762 AAGTGCAGGCTACTATGCGTACTCA-A-TGACTTCGAT
65 AAGTGCAGGCTACTACGCGTAC-CAGATTG--TT-GAT
* **
103740798 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCATGTGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GTGAAGTCACATGTGTAGTACT
* *
103740863 AAGTGCAGGCTACTACGTGTACCAGATTGTTGGT
65 AAGTGCAGGCTACTACGCGTACCAGATTGTTGAT
* * * * *
103740897 CGCATGTGTAGTACTAAGTACAGGCTACTATGCGTATCAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT
103740939 AGCTTCGGCT
Statistics
Matches: 123, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
99 39 0.32
100 5 0.04
101 77 0.63
102 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (98 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGTGAAGTCACATGTGTAGTACTA
AGTGCAGGCTACTACGCGTACCAGATTGTTGAT
Found at i:103744090 original size:28 final size:28
Alignment explanation
Indices: 103744058--103744156 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
103744048 GCAATAAGCC
*
103744058 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
103744086 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
103744114 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
103744143 CGCACACTTAGTGC
1 CGCACACTTAGTGC
103744157 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:103751766 original size:28 final size:28
Alignment explanation
Indices: 103751734--103751832 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
103751724 GCAATAAGCC
*
103751734 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
103751762 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
103751790 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
103751819 CGCACACTTAGTGC
1 CGCACACTTAGTGC
103751833 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:103753778 original size:41 final size:41
Alignment explanation
Indices: 103753733--103753850 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
103753723 TGAAAGATAA
103753733 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
103753774 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
103753804 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
103753845 ATGTAG
1 ATGTAG
103753851 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:103753789 original size:71 final size:71
Alignment explanation
Indices: 103753701--103753864 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
103753691 GAGATGTATC
103753701 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
103753766 AGGACA
66 AGGACA
103753772 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
103753837 AGGACA
66 AGGACA
103753843 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
103753865 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:103757658 original size:28 final size:28
Alignment explanation
Indices: 103757626--103757724 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
103757616 GCAATAAGCC
*
103757626 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
103757654 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
103757682 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
103757711 CGCACACTTAGTGC
1 CGCACACTTAGTGC
103757725 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:103764683 original size:50 final size:50
Alignment explanation
Indices: 103764608--103764829 Score: 200
Period size: 50 Copynumber: 4.4 Consensus size: 50
103764598 TGAGTACCCG
* *
103764608 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
* * ** *
103764658 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GACTGTTAAGTCACA
* * * * * * *
103764709 TCTGTAGTACTAAGTGCAAGCTACTATGTGTATCAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTAAGTCACA
* * * ** *
103764759 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATTG-TCGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
103764808 TGTGTAGTACTAAGTGCAGGCT
1 TGTGTAGTACTAAGTGCAGGCT
103764830 CCTATGCGTA
Statistics
Matches: 141, Mismatches: 24, Indels: 15
0.78 0.13 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 29 0.21
50 69 0.49
51 34 0.24
52 3 0.02
53 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
Found at i:103774784 original size:28 final size:28
Alignment explanation
Indices: 103774707--103774784 Score: 70
Period size: 28 Copynumber: 2.8 Consensus size: 28
103774697 ACCTTTCGAG
* **
103774707 AGGGT-AAAATGACCAAAATACCCCTGA
1 AGGGTAAAAATGACTATTATACCCCTGA
* *
103774734 AGGGTAAAAATTACTATTCTACCCCT-A
1 AGGGTAAAAATGACTATTATACCCCTGA
* *
103774761 ATGGGTAGAAATGACTGTTATACC
1 A-GGGTAAAAATGACTATTATACC
103774785 TTAGAGGTAT
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.24
Consensus pattern (28 bp):
AGGGTAAAAATGACTATTATACCCCTGA
Found at i:103781754 original size:37 final size:37
Alignment explanation
Indices: 103781704--103781817 Score: 221
Period size: 37 Copynumber: 3.1 Consensus size: 37
103781694 TTATTACGAA
103781704 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
103781741 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
103781778 GTC-TACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
103781814 GTCT
1 GTCT
103781818 CACCGGAACA
Statistics
Matches: 76, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
36 36 0.47
37 40 0.53
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:103781824 original size:36 final size:36
Alignment explanation
Indices: 103781708--103781817 Score: 211
Period size: 36 Copynumber: 3.0 Consensus size: 36
103781698 TACGAAGTCT
103781708 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
103781744 TTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
103781781 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
103781817 T
1 T
103781818 CACCGGAACA
Statistics
Matches: 73, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
36 37 0.51
37 36 0.49
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.24
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:103781927 original size:48 final size:48
Alignment explanation
Indices: 103781869--103781972 Score: 199
Period size: 48 Copynumber: 2.2 Consensus size: 48
103781859 TGTTACAACA
103781869 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
*
103781917 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
103781965 TTCACATT
1 TTCACATT
103781973 CATCACATCG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
Found at i:103782021 original size:49 final size:49
Alignment explanation
Indices: 103781964--103782344 Score: 648
Period size: 49 Copynumber: 7.9 Consensus size: 49
103781954 CACACATATA
*
103781964 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
103782013 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
103782060 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
103782109 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
103782156 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
103782205 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
103782252 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
103782301 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
103782345 CATCTCATAC
Statistics
Matches: 314, Mismatches: 12, Indels: 12
0.93 0.04 0.04
Matches are distributed among these distances:
47 135 0.43
49 179 0.57
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:103782065 original size:96 final size:96
Alignment explanation
Indices: 103781964--103782345 Score: 701
Period size: 96 Copynumber: 4.0 Consensus size: 96
103781954 CACACATATA
* *
103781964 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
103782029 TCGGCCATTAGGCCTTATCACATATATACTC
66 TTGGCCATTAGGCCTTATCACATATATACTC
*
103782060 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
103782125 TTGGCCATTAGGCCTTATCACATATATACTC
66 TTGGCCATTAGGCCTTATCACATATATACTC
*
103782156 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
103782221 TTGGCCATTAGGCCTTATCACATATATACAC
66 TTGGCCATTAGGCCTTATCACATATATACTC
103782252 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
103782317 TTGGCCATTAGGCCGTATCACATATATAC
66 TTGGCCATTAGGCCTTATCACATATATAC
103782346 ATCTCATACA
Statistics
Matches: 279, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 279 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (96 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGCCATTAGGCCTTATCACATATATACTC
Found at i:103782243 original size:22 final size:22
Alignment explanation
Indices: 103782215--103782290 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
103782205 TTTCACATTC
103782215 ATCACATTGGCCATTAGGCCTT
1 ATCACATTGGCCATTAGGCCTT
*** *** *
103782237 ATCACATATATACACTTTCACATT
1 ATCACAT-TGGCCA-TTAGGCCTT
103782261 CATCACATTGGCCATTAGGCCTT
1 -ATCACATTGGCCATTAGGCCTT
103782284 ATCACAT
1 ATCACAT
103782291 ATATATACAC
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTAGGCCTT
Done.