Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 332 of 433
Found at i:103786172 original size:40 final size:40
Alignment explanation
Indices: 103786123--103786423 Score: 299
Period size: 40 Copynumber: 7.5 Consensus size: 40
103786113 CCAGCATGAT
* *
103786123 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
103786163 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
103786203 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
103786243 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * * *
103786283 TGCTCTTCGGAATTTAG-CCGGATATAACCACAAGCAC-AA
1 TGCTCTTCGGAACTTAGCCCGGATA-CATCACTAGCACGAA
** * * * * *
103786322 TTGC-CTTCGGGTCTTAACCCGGGTATAACAACTCA-CACAAA
1 -TGCTCTTCGGAACTTAGCCCGGATACATC-ACT-AGCACGAA
** * **
103786363 TGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAA
1 TGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCACGAA
*
103786403 TGC-CTTCGGGACTTAGCCCGG
1 TGCTCTTCGGAACTTAGCCCGG
103786424 GTATCATTCA
Statistics
Matches: 229, Mismatches: 24, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
39 21 0.09
40 204 0.89
41 4 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:103788379 original size:37 final size:37
Alignment explanation
Indices: 103788329--103788455 Score: 229
Period size: 37 Copynumber: 3.4 Consensus size: 37
103788319 TTATTACGAA
103788329 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
103788366 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
103788403 GTC-TACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
103788439 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
103788456 TTTCCAAGTT
Statistics
Matches: 87, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
36 36 0.41
37 46 0.53
38 5 0.06
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:103788553 original size:48 final size:48
Alignment explanation
Indices: 103788495--103788598 Score: 199
Period size: 48 Copynumber: 2.2 Consensus size: 48
103788485 TGTTACAACA
103788495 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
*
103788543 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
103788591 TTCACATT
1 TTCACATT
103788599 CATCACATCG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
Found at i:103788647 original size:49 final size:49
Alignment explanation
Indices: 103788590--103788923 Score: 577
Period size: 49 Copynumber: 6.9 Consensus size: 49
103788580 CACACATATA
*
103788590 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
103788639 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
103788686 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
103788733 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
103788782 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
103788831 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
103788880 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
103788924 CATTCATACA
Statistics
Matches: 275, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 90 0.33
49 185 0.67
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:103788724 original size:22 final size:22
Alignment explanation
Indices: 103788696--103788771 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
103788686 TTTCACATTC
103788696 ATCACATTGGCCATTAGGCCTT
1 ATCACATTGGCCATTAGGCCTT
*** *** *
103788718 ATCACATATATACACTTTCACATT
1 ATCACAT-TGGCCA-TTAGGCCTT
103788742 CATCACATTGGCCATTAGGCCTT
1 -ATCACATTGGCCATTAGGCCTT
103788765 ATCACAT
1 ATCACAT
103788772 GTATATACAC
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTAGGCCTT
Found at i:103792748 original size:40 final size:40
Alignment explanation
Indices: 103792699--103792998 Score: 290
Period size: 40 Copynumber: 7.5 Consensus size: 40
103792689 CCAGCATGAT
* *
103792699 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
103792739 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
103792779 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
103792819 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * * *
103792859 TGCTCTTCGGAATTTAG-CCGGATATAACCACAAGCAC-AA
1 TGCTCTTCGGAACTTAGCCCGGATA-CATCACTAGCACGAA
** * * * * *
103792898 TTGC-CTTCGGGTCTTAACCCGGGTATAACAACTCA-CACAAA
1 -TGCTCTTCGGAACTTAGCCCGGATACATC-ACT-AGCACGAA
** * **
103792939 TGC-CTTCGGGTCTTAG-CCGGATATATTCACTAGCATAAA
1 TGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCACGAA
*
103792978 TGC-CTTCGGGACTTAGCCCGG
1 TGCTCTTCGGAACTTAGCCCGG
103792999 GTATCATTCA
Statistics
Matches: 227, Mismatches: 24, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
38 1 0.00
39 51 0.22
40 172 0.76
41 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:103794973 original size:24 final size:24
Alignment explanation
Indices: 103794946--103794993 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
103794936 TCGGGTCTTA
103794946 CCCGGACATAATCTCCACACGTAG
1 CCCGGACATAATCTCCACACGTAG
103794970 CCCGGACATAATCTCCACACGTAG
1 CCCGGACATAATCTCCACACGTAG
103794994 TCATCGGGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.38, G:0.17, T:0.17
Consensus pattern (24 bp):
CCCGGACATAATCTCCACACGTAG
Found at i:103795009 original size:61 final size:61
Alignment explanation
Indices: 103794909--103795030 Score: 226
Period size: 61 Copynumber: 2.0 Consensus size: 61
103794899 CGAAGTCTTA
* *
103794909 CCCGGACATAATCTCCACATGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAG
1 CCCGGACATAATCTCCACACGTAGTCATCGGGTCATACCCGGACATAATCTCCACACGTAG
103794970 CCCGGACATAATCTCCACACGTAGTCATCGGGTCATACCCGGACATAATCTCCACACGTAG
1 CCCGGACATAATCTCCACACGTAGTCATCGGGTCATACCCGGACATAATCTCCACACGTAG
103795031 TCATCGGGTC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (61 bp):
CCCGGACATAATCTCCACACGTAGTCATCGGGTCATACCCGGACATAATCTCCACACGTAG
Found at i:103795020 original size:37 final size:37
Alignment explanation
Indices: 103794970--103795040 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
103794960 CCACACGTAG
103794970 CCCGGACATAATCTCCACACGTAGTCATCGGGTCATA
1 CCCGGACATAATCTCCACACGTAGTCATCGGGTCATA
103795007 CCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 CCCGGACATAATCTCCACACGTAGTCATCGGGTC
103795041 TCACCTGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.25, C:0.34, G:0.20, T:0.21
Consensus pattern (37 bp):
CCCGGACATAATCTCCACACGTAGTCATCGGGTCATA
Found at i:103795152 original size:48 final size:48
Alignment explanation
Indices: 103795094--103795197 Score: 199
Period size: 48 Copynumber: 2.2 Consensus size: 48
103795084 TGTTACAACA
103795094 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
*
103795142 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
103795190 TTCACATT
1 TTCACATT
103795198 CATCACATCG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
Found at i:103795246 original size:49 final size:49
Alignment explanation
Indices: 103795189--103795571 Score: 657
Period size: 49 Copynumber: 7.9 Consensus size: 49
103795179 CACACATATA
*
103795189 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
103795238 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
103795285 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
103795334 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
103795381 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
103795430 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATGTATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
103795479 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
103795528 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
103795572 CATTCATACA
Statistics
Matches: 316, Mismatches: 14, Indels: 8
0.93 0.04 0.02
Matches are distributed among these distances:
47 89 0.28
49 227 0.72
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:103795290 original size:96 final size:96
Alignment explanation
Indices: 103795189--103795572 Score: 687
Period size: 96 Copynumber: 4.0 Consensus size: 96
103795179 CACACATATA
* *
103795189 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
103795254 TCGGCCATTAGGCCTTATCACATATATACTC
66 TTGGCCATTAGGCCTTATCACATATATACTC
*
103795285 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
103795350 TTGGCCATTAGGCCTTATCACATATATACTC
66 TTGGCCATTAGGCCTTATCACATATATACTC
*
103795381 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
103795446 TTGGCCATTAGGCCTTATCACATATGTATACAC
66 TTGGCCATTAGGCCTTATCACATA--TATACTC
103795479 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
103795544 TTGGCCATTAGGCCGTATCACATATATAC
66 TTGGCCATTAGGCCTTATCACATATATAC
103795573 ATTCATACAT
Statistics
Matches: 279, Mismatches: 7, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
96 186 0.67
98 93 0.33
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (96 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGCCATTAGGCCTTATCACATATATACTC
Found at i:103795343 original size:145 final size:145
Alignment explanation
Indices: 103795189--103795573 Score: 666
Period size: 145 Copynumber: 2.7 Consensus size: 145
103795179 CACACATATA
* *
103795189 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
* *
103795254 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
66 TTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTAT
*
103795319 CACATGTATATACAC
131 CACATATATATACAC
*
103795334 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTCTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
103795397 TTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTT
66 TTGGCCATTAGGCCTTATCACA--TATATACACTTTCACATTCATCACATTGGCCATTAGGCCTT
*
103795462 ATCACATATGTATACAC
129 ATCACATATATATACAC
103795479 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
103795544 TTGGCCATTAGGCCGTATCACATATATACA
66 TTGGCCATTAGGCCTTATCACATATATACA
103795574 TTCATACATA
Statistics
Matches: 227, Mismatches: 9, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
143 45 0.20
145 136 0.60
147 46 0.20
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (145 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTAT
CACATATATATACAC
Found at i:103805030 original size:52 final size:51
Alignment explanation
Indices: 103804957--103805144 Score: 150
Period size: 50 Copynumber: 3.7 Consensus size: 51
103804947 ATTGTGAGAA
* *
103804957 CACATGTGTAATAC-AATGTGCAGGCTACTATGTGTTA-AAAATGGTTTTAGGT
1 CACATGTGTAGTACTAA-GTGCAGGCTACTATGTGTTACAAAAT-G-ATTAGGT
* ** ***
103805009 CACGTGTGTAGTACTAAGTGCAGGCTACTACATG-TACCGGATGATTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTTACAAAATGATTAGGT
* *** * * *
103805059 CGCATGTGTAGTACTAAGTGCAGGCTACTATGTG-TACCCGATAACTTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTTACAAAATGA-TTAGGT
* * *
103805110 CACATGTGTGGTACTAAGTACAGGCCACTATGTGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGT
103805145 AAAAGATAGC
Statistics
Matches: 112, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
50 44 0.39
51 37 0.33
52 29 0.26
53 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTTACAAAATGATTAGGT
Found at i:103805070 original size:50 final size:51
Alignment explanation
Indices: 103805003--103805139 Score: 168
Period size: 50 Copynumber: 2.7 Consensus size: 51
103804993 AAAAATGGTT
* * *
103805003 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATGA-
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCCGATAAC
* **
103805053 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAAC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCCGATAAC
* * * * *
103805104 TTTGATCACATGTGTGGTACTAAGTACAGGCCACTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
103805140 TGTGTAAAAG
Statistics
Matches: 74, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
50 44 0.59
51 30 0.41
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (51 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCCGATAAC
Found at i:103805140 original size:51 final size:51
Alignment explanation
Indices: 103805006--103805194 Score: 173
Period size: 51 Copynumber: 3.7 Consensus size: 51
103804996 AATGGTTTTA
* * * ** * * *
103805006 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATGA-TTA
1 GGTCACATGTGTAGTACTAAGTACAGGCCACTATGTGTACCAGATAACTTT
* * * *
103805056 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTACAGGCCACTATGTGTACCAGATAACTTT
* * ** *
103805107 GATCACATGTGTGGTACTAAGTACAGGCCACTATGTGTAAAAGATAGCTTT
1 GGTCACATGTGTAGTACTAAGTACAGGCCACTATGTGTACCAGATAACTTT
* * * * *
103805158 GGTCACAAGTGTGGTACTATGTAAAGGCCACTTTGTG
1 GGTCACATGTGTAGTACTAAGTACAGGCCACTATGTG
103805195 AAGAAGGTAG
Statistics
Matches: 117, Mismatches: 21, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 41 0.35
51 76 0.65
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTAAGTACAGGCCACTATGTGTACCAGATAACTTT
Found at i:103805206 original size:51 final size:51
Alignment explanation
Indices: 103805064--103805239 Score: 167
Period size: 51 Copynumber: 3.5 Consensus size: 51
103805054 TAGGTCGCAT
* * * * *** * * *
103805064 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTTTGATCACAT
1 GTGTGGTACTATGTACAGGCCACTATGTGTAAAAGATAGCTTTGGTCACAA
*
103805115 GTGTGGTACTAAGTACAGGCCACTATGTGTAAAAGATAGCTTTGGTCACAA
1 GTGTGGTACTATGTACAGGCCACTATGTGTAAAAGATAGCTTTGGTCACAA
* * * *
103805166 GTGTGGTACTATGTAAAGGCCACTTTGTG-AAGAAGGTAGCTTT-GACTACAA
1 GTGTGGTACTATGTACAGGCCACTATGTGTAA-AAGATAGCTTTGGTC-ACAA
* *
103805217 GGGTGGTACTATGTGCAGGCCAC
1 GTGTGGTACTATGTACAGGCCAC
103805240 CGGGCATCCG
Statistics
Matches: 106, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
50 4 0.04
51 102 0.96
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (51 bp):
GTGTGGTACTATGTACAGGCCACTATGTGTAAAAGATAGCTTTGGTCACAA
Found at i:103806471 original size:21 final size:17
Alignment explanation
Indices: 103806430--103806464 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
103806420 AGTTGGTTGA
103806430 ATGAGTGTGTAATGACT
1 ATGAGTGTGTAATGACT
103806447 ATGAGTGTGTAATGACT
1 ATGAGTGTGTAATGACT
103806464 A
1 A
103806465 AGTATGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.06, G:0.29, T:0.34
Consensus pattern (17 bp):
ATGAGTGTGTAATGACT
Found at i:103810327 original size:42 final size:42
Alignment explanation
Indices: 103810215--103810327 Score: 127
Period size: 43 Copynumber: 2.7 Consensus size: 42
103810205 TACCATACCA
* * ** *
103810215 ATGCCATATCCTGGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCTAGATATGGTCTTACACGAAATCTCATATAG
* * *
103810257 ATGCCAACAGCCTAGCTATGGTCTTACACGAAATCTCATATAG
1 ATGCC-ATATCCTAGATATGGTCTTACACGAAATCTCATATAG
* *
103810300 ATTCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCTAGATATGGTCTTACAC
103810328 ATAATTTTAG
Statistics
Matches: 57, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 24 0.42
43 33 0.58
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCTAGATATGGTCTTACACGAAATCTCATATAG
Found at i:103827953 original size:30 final size:30
Alignment explanation
Indices: 103827917--103827977 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
103827907 CATTTAATAC
*
103827917 AAACTTTGGCAAAATTACATTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
* *
103827947 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
103827977 A
1 A
103827978 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACACTTTTGCCCCT
Found at i:103829941 original size:25 final size:25
Alignment explanation
Indices: 103829913--103829960 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
103829903 AAGACCTATA
103829913 AATCAGTAAACTCAT-ACGAGCTGAG
1 AATCAGTAAACTC-TCACGAGCTGAG
*
103829938 AATCAGTAAGCTCTCACGAGCTG
1 AATCAGTAAACTCTCACGAGCTG
103829961 CAATCGATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (25 bp):
AATCAGTAAACTCTCACGAGCTGAG
Found at i:103838293 original size:21 final size:20
Alignment explanation
Indices: 103838254--103838291 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
103838244 TTATTTGTGA
103838254 TTTTTTTGTTTACATTTTAT
1 TTTTTTTGTTTACATTTTAT
103838274 TTTTTTCTGTTTA-ATTTT
1 TTTTTT-TGTTTACATTTT
103838292 TAGCTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.13, C:0.05, G:0.05, T:0.76
Consensus pattern (20 bp):
TTTTTTTGTTTACATTTTAT
Found at i:103847612 original size:40 final size:40
Alignment explanation
Indices: 103847567--103847696 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
103847557 CGGAATACAA
103847567 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
103847607 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
103847647 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
103847687 CCGGATATAA
1 CCGGATATAA
103847697 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:103847711 original size:40 final size:40
Alignment explanation
Indices: 103847567--103847730 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
103847557 CGGAATACAA
* **
103847567 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
103847607 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
103847647 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
103847687 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
103847727 CCGG
1 CCGG
103847731 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:103856807 original size:40 final size:40
Alignment explanation
Indices: 103856748--103856954 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
103856738 CAATTGAATG
* * * *
103856748 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * *
103856788 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGA-C
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
103856827 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
103856867 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
103856907 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
103856947 ATATCCGG
1 ATATCCGG
103856955 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
38 2 0.01
39 29 0.21
40 107 0.76
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:103856885 original size:79 final size:80
Alignment explanation
Indices: 103856750--103856954 Score: 236
Period size: 79 Copynumber: 2.6 Consensus size: 80
103856740 ATTGAATGAT
* * ** * * *
103856750 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
103856814 TTGTGCTAGT-G-ACAC
65 TTGTGCAAGTCGTAC-C
* * *
103856829 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
* *
103856894 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGTACC
* *
103856909 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
103856955 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
78 2 0.02
79 60 0.56
80 44 0.41
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGTACC
Found at i:103859841 original size:28 final size:28
Alignment explanation
Indices: 103859804--103859910 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
103859794 GCAATCAAAT
*
103859804 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
103859832 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
103859860 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
103859888 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
103859911 CGAATGATTC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:103861950 original size:29 final size:29
Alignment explanation
Indices: 103861918--103862131 Score: 173
Period size: 29 Copynumber: 7.4 Consensus size: 29
103861908 TCCGTAATGA
103861918 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * ** **** *
103861947 GCACTGTGTGTACGAGTTC-CATAACCAA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
103861975 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * ****
103862004 GCACTGTGTGTGCGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
103862032 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * * *** *
103862061 GCATTGTGTGTGCGAGTTCCGTAACT-AA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* *
103862089 GCACTGTGTGTGCAAGATCGGTTGTTGGG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
103862118 GCACTAAGTGTGTG
1 GCACT--GTGTGTG
103862132 AAATGAGATC
Statistics
Matches: 134, Mismatches: 46, Indels: 8
0.71 0.24 0.04
Matches are distributed among these distances:
28 61 0.46
29 66 0.49
31 7 0.05
ACGTcount: A:0.18, C:0.17, G:0.36, T:0.29
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:103861990 original size:28 final size:28
Alignment explanation
Indices: 103861891--103862101 Score: 127
Period size: 29 Copynumber: 7.5 Consensus size: 28
103861881 GTGAACATAG
* **
103861891 GCACTGTGTGTGTGAGTTCCGTAA-TGA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
* * **** *
103861918 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCG-TAACCAA
* *
103861947 GCACTGTGTGTACGAGTTCCATAACCAA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
* * **** *
103861975 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCG-TAACCAA
*
103862004 GCACTGTGTGTGCGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
* * **** *
103862032 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCG-TAACCAA
* *
103862061 GCATTGTGTGTGCGAGTTCCGTAACTAA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
103862089 GCACTGTGTGTGC
1 GCACTGTGTGTGC
103862102 AAGATCGGTT
Statistics
Matches: 129, Mismatches: 51, Indels: 7
0.69 0.27 0.04
Matches are distributed among these distances:
27 18 0.14
28 54 0.42
29 57 0.44
ACGTcount: A:0.18, C:0.18, G:0.35, T:0.30
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCAA
Found at i:103861993 original size:57 final size:57
Alignment explanation
Indices: 103861889--103862131 Score: 371
Period size: 57 Copynumber: 4.2 Consensus size: 57
103861879 AAGTGAACAT
* **
103861889 AGGCACTGTGTGTGTGAGTTCCGTAA-TGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
103861945 AGGCACTGTGTGTACGAGTTCCATAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
*
103862002 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* * *
103862059 AGGCATTGTGTGTGCGAGTTCCGTAACTAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
*
103862116 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
103862132 AAATGAGATC
Statistics
Matches: 170, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
56 23 0.14
57 140 0.82
59 7 0.04
ACGTcount: A:0.18, C:0.17, G:0.35, T:0.30
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:103866549 original size:28 final size:28
Alignment explanation
Indices: 103866456--103866548 Score: 150
Period size: 28 Copynumber: 3.3 Consensus size: 28
103866446 CAAATATGGT
*
103866456 ACTTAGTGTACGAAATATTGAGAATGGC
1 ACTTAGTGTACGAAATATTGAGAATGAC
*
103866484 ACCTAGTGTACGAAATATTGAGAATGAC
1 ACTTAGTGTACGAAATATTGAGAATGAC
* *
103866512 ACTTAGTGTGCGAGATATTGAGAATGAC
1 ACTTAGTGTACGAAATATTGAGAATGAC
103866540 ACTTAGTGT
1 ACTTAGTGT
103866549 GTAAAATATC
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (28 bp):
ACTTAGTGTACGAAATATTGAGAATGAC
Found at i:103869701 original size:40 final size:39
Alignment explanation
Indices: 103869656--103869863 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
103869646 CGGAATACAA
*
103869656 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
103869696 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
103869736 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
103869776 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
103869816 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
103869856 CCGGATAT
1 CCGGATAT
103869864 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:103869796 original size:80 final size:80
Alignment explanation
Indices: 103869656--103869862 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
103869646 CGGAATACAA
* * *
103869656 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
103869720 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
103869736 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
103869800 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
103869816 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
103869863 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:103883465 original size:47 final size:47
Alignment explanation
Indices: 103883356--103883652 Score: 276
Period size: 47 Copynumber: 6.7 Consensus size: 47
103883346 GCTATACGTG
* * * * * *
103883356 TAACGTGGTGCTTAGTGGATATACCATGATTACACATATTGATACAT
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
*
103883403 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCAT
1 -TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
* * * *
103883451 TAACGTGGTTCTAAGTGAATAT--AAC--CTAGC-TA-A---A--CAT
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTA-CATATATTGATTCAT
103883488 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 -TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
* * * *
103883536 TAACATGGTTCTAAGTGGATATAACC-CGGTTA-A-ACA-TG------
1 TAACGTGGTGCTAAGTGGATAT-GCCACGGTTACATATATTGATTCAT
103883574 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
103883621 TAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 TAACGTGGTGCTAAGTGGATATGCCACGGTTA
103883653 TACATGTTAA
Statistics
Matches: 202, Mismatches: 23, Indels: 49
0.74 0.08 0.18
Matches are distributed among these distances:
37 5 0.02
38 46 0.23
39 2 0.01
40 4 0.02
41 3 0.01
42 5 0.02
43 5 0.02
44 3 0.01
45 4 0.02
46 2 0.01
47 78 0.39
48 45 0.22
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (47 bp):
TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
Found at i:103883503 original size:85 final size:85
Alignment explanation
Indices: 103883399--103883642 Score: 425
Period size: 85 Copynumber: 2.9 Consensus size: 85
103883389 ACATATTGAT
*
103883399 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATTAACGTGGTTCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTTCTA
* *
103883464 AGTGAATATAACCTAGCTAA
66 AGTGGATATAACCCAGCTAA
*
103883484 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTTCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTTCTA
* *
103883549 AGTGGATATAACCCGGTTAA
66 AGTGGATATAACCCAGCTAA
*
103883569 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTTCTA
103883634 AGTGGATAT
66 AGTGGATAT
103883643 GCCACGGTTA
Statistics
Matches: 151, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 151 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTTCTA
AGTGGATATAACCCAGCTAA
Found at i:103892768 original size:22 final size:22
Alignment explanation
Indices: 103892741--103892815 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
103892731 TACATATATG
103892741 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
103892763 TGTGATGAATG-CGAAAGTG-CATA
1 TGTGAT-AAGGCCGAATG-GCCA-A
*
103892786 TGTGTGATAAGGCCGTATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
103892810 TGTGAT
1 TGTGAT
103892816 GAATGTGAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 14
0.68 0.08 0.23
Matches are distributed among these distances:
22 19 0.46
23 5 0.12
24 5 0.12
25 12 0.29
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:103892886 original size:49 final size:47
Alignment explanation
Indices: 103892735--103892957 Score: 313
Period size: 47 Copynumber: 4.7 Consensus size: 47
103892725 ATGATATACA
* * *
103892735 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGCGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* *
103892782 CATATGTGTGATAAGGCCGT-ATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCC-TAATGGCCAATGTGATGAATGTGAAAGTG
*
103892829 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* *
103892876 TATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
1 TA--TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
*
103892925 TATATATATGTGATAAGGCCTAATGGCTAATGT
1 --TATATATGTGATAAGGCCTAATGGCCAATGT
103892958 AAAATATATG
Statistics
Matches: 161, Mismatches: 9, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
46 1 0.01
47 87 0.54
49 71 0.44
51 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:103893103 original size:37 final size:37
Alignment explanation
Indices: 103893053--103893174 Score: 199
Period size: 37 Copynumber: 3.3 Consensus size: 37
103893043 GGAATATGTT
*
103893053 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
103893090 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
* * * *
103893127 TCGGGTAAGACCTGATGACTACGTGTAGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
103893164 CCGGGTAAGAC
1 CCGGGTAAGAC
103893175 TTCGTAATAA
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 79 1.00
ACGTcount: A:0.26, C:0.18, G:0.33, T:0.23
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:103901211 original size:43 final size:43
Alignment explanation
Indices: 103901164--103901373 Score: 178
Period size: 43 Copynumber: 4.9 Consensus size: 43
103901154 AATGAGATGA
*
103901164 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATTGT
* * *
103901207 GATTATGTGTAAGACTATGTCTGGGACATTGGCA-T-TATTAT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATTGT
* * * * *
103901248 ACGATTATGTGTATGACCATGTCTGAGACATTGGCATCGTTAAT-T
1 --GATTACGTGTAAGACCATGTCTGGGACATTGGCATTG-TATTGT
* * * * * *
103901293 GATTACGTGTAAGACCCTATTTGGGACAGTGGCATCG-ATAAGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTAT-TGT
* * * *
103901336 GATAACATGTAAGACCATATCTGGGATA-TGGCATTGTA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTA
103901374 CAAGCTTATG
Statistics
Matches: 135, Mismatches: 24, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
41 6 0.04
42 8 0.06
43 117 0.87
45 1 0.01
46 3 0.02
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATTGT
Found at i:103908216 original size:71 final size:71
Alignment explanation
Indices: 103908132--103908295 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
103908122 CGATTTGTCT
103908132 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
103908197 CTTTCA
66 CTTTCA
103908203 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
103908268 CTTTCA
66 CTTTCA
103908274 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
103908296 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:103908333 original size:71 final size:70
Alignment explanation
Indices: 103908132--103908329 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
103908122 CGATTTGTCT
* * * *
103908132 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
103908197 CTTTCA
65 CTTTCA
* * * *
103908203 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
103908268 CTTTCA
65 CTTTCA
* *
103908274 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
103908330 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:103915307 original size:71 final size:71
Alignment explanation
Indices: 103915223--103915386 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
103915213 CGATTTGTCT
103915223 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
103915288 CTTTCA
66 CTTTCA
103915294 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
103915359 CTTTCA
66 CTTTCA
103915365 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
103915387 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:103915424 original size:71 final size:70
Alignment explanation
Indices: 103915223--103915420 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
103915213 CGATTTGTCT
* * * *
103915223 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
103915288 CTTTCA
65 CTTTCA
* * * *
103915294 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
103915359 CTTTCA
65 CTTTCA
* *
103915365 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
103915421 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:103918826 original size:48 final size:48
Alignment explanation
Indices: 103918750--103918882 Score: 185
Period size: 48 Copynumber: 2.8 Consensus size: 48
103918740 TAGGGTTATG
* * *
103918750 TGTGATCCCATGTAAGGCCATGTCTGGGACATGGCGTTGGCATTGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * *
103918798 TGTGATCCCATGTAAGACCATATTTGGGATATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
** *
103918846 TGTGATTTCGTGTAAGACCATGTCTGGGACATGGCAT
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCAT
103918883 CGATATGAGA
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 73 1.00
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:103918834 original size:42 final size:42
Alignment explanation
Indices: 103918787--103918969 Score: 136
Period size: 42 Copynumber: 4.2 Consensus size: 42
103918777 GACATGGCGT
*
103918787 TGGCATTGATATGTGATCCCATGTAAGACCATATTTGGGATA
1 TGGCATTGATATGTGATCCCATGTAAGACCATATCTGGGATA
** * * *
103918829 TGGCATTGGCATCGATATGTGATTTCGTGTAAGACCATGTCTGGGACA
1 TGGCA-T----T-GATATGTGATCCCATGTAAGACCATATCTGGGATA
* * * * * *
103918877 TGGCATCGATATGAGA-CATCGTGTAAGACCATAACTGGGCTA
1 TGGCATTGATATGTGATC-CCATGTAAGACCATATCTGGGATA
* * *
103918919 TCG-ACTTCGATTTGTGATCCCATGTAAGACCATATCTAGGATA
1 TGGCA-TT-GATATGTGATCCCATGTAAGACCATATCTGGGATA
103918962 TGGCATTG
1 TGGCATTG
103918970 GCATCTTACT
Statistics
Matches: 107, Mismatches: 23, Indels: 22
0.70 0.15 0.14
Matches are distributed among these distances:
41 1 0.01
42 37 0.35
43 31 0.29
44 2 0.02
47 2 0.02
48 34 0.32
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (42 bp):
TGGCATTGATATGTGATCCCATGTAAGACCATATCTGGGATA
Found at i:103926549 original size:21 final size:21
Alignment explanation
Indices: 103926523--103926578 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
103926513 TGGCCTGAGG
*
103926523 CACGGGCGTGTCCCAGGGTCA
1 CACGGGCGTGTCCCAAGGTCA
*
103926544 CACGGGCATGTCCCAAGGTCA
1 CACGGGCGTGTCCCAAGGTCA
*
103926565 TACGGGCGTGTCCC
1 CACGGGCGTGTCCC
103926579 TTGGACCACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.16, C:0.34, G:0.34, T:0.16
Consensus pattern (21 bp):
CACGGGCGTGTCCCAAGGTCA
Found at i:103940613 original size:125 final size:124
Alignment explanation
Indices: 103940494--103940760 Score: 295
Period size: 125 Copynumber: 2.1 Consensus size: 124
103940484 AAATCACAAT
* * * * ** **
103940494 CCAGCACGATTGGGCACAATTTATCGAATTTCCAAATATGAAATATTGCCTCATTTTGA-TTTAA
1 CCAGCACGATTGGGCACAATCTATCAAACTTCCAAACACAAAATATTGCCTCATTTCAATTTTAA
*
103940558 GAAAACAAAGATGAAATGGCAAAAGGATA-TTCTGTATCTTAGTCGAATGAAAAATCGAAA
66 -AAAACAAAGATGAAATGGCAAAAGGATATTTC-GTATCTTAGTCGAACGAAAAATCGAAA
* * *
103940618 CCCAGCATGATTGGGCACGATCTCTCAAACTTCCAAACACAAAATATTGCCTCATTTCAATTTTA
1 -CCAGCACGATTGGGCACAATCTATCAAACTTCCAAACACAAAATATTGCCTCATTTCAATTTTA
** ** ** * * *
103940683 AAAAGTATGGATGAAATTTCCAAAGGATATTTCGTATTTTAGTTGAACGAAAAATCGAAA
65 AAAAACAAAGATGAAATGGCAAAAGGATATTTCGTATCTTAGTCGAACGAAAAATCGAAA
103940743 CCTAGCACGATTGGGCAC
1 CC-AGCACGATTGGGCAC
103940761 GATTCCTCGG
Statistics
Matches: 117, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
124 2 0.02
125 107 0.91
126 8 0.07
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (124 bp):
CCAGCACGATTGGGCACAATCTATCAAACTTCCAAACACAAAATATTGCCTCATTTCAATTTTAA
AAAACAAAGATGAAATGGCAAAAGGATATTTCGTATCTTAGTCGAACGAAAAATCGAAA
Found at i:103946349 original size:125 final size:126
Alignment explanation
Indices: 103946203--103946432 Score: 295
Period size: 125 Copynumber: 1.8 Consensus size: 126
103946193 TCCAAATATG
* * * * *
103946203 AATATTGCCTTATTTTTAA-TTTAAGAAAACATGGATGAAA-TGGCAAAAGGATATTTCGTATCT
1 AATATTGCCTCATTTTCAATTTTAA-AAAACATGGACGAAATTGCCAAAA-GATATTCCGTATCT
* * *
103946266 TGGTCGAATGAAAAATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAATCACGA
64 TAGTCGAACGAAAAATCGAAACCCAACACGATTGGGCACGATCTCTCAAACTTCCAATCACGA
** * *
103946329 AATATTGCCTCA-TTTCAATTTTAAAAAGTATGGACGAAATTTCCAAAAGATATTCCGTATTTTA
1 AATATTGCCTCATTTTCAATTTTAAAAAACATGGACGAAATTGCCAAAAGATATTCCGTATCTTA
* *
103946393 GTTGAACGAAAAATTGAAACCCAACACGATTGGGCACGAT
66 GTCGAACGAAAAATCGAAACCCAACACGATTGGGCACGAT
103946433 TCCTCGGACC
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
125 66 0.75
126 22 0.25
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (126 bp):
AATATTGCCTCATTTTCAATTTTAAAAAACATGGACGAAATTGCCAAAAGATATTCCGTATCTTA
GTCGAACGAAAAATCGAAACCCAACACGATTGGGCACGATCTCTCAAACTTCCAATCACGA
Found at i:103947400 original size:27 final size:27
Alignment explanation
Indices: 103947348--103947400 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
103947338 AATATATATC
* **
103947348 TAAATAATTTTAAAAAGAAATTATTAT
1 TAAATAAATTTAAAAAGAAAAAATTAT
103947375 TAAATAAATTTAAAAA-AATAAAATTA
1 TAAATAAATTTAAAAAGAA-AAAATTA
103947401 ACCATTGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 2 0.09
27 20 0.91
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (27 bp):
TAAATAAATTTAAAAAGAAAAAATTAT
Found at i:103950778 original size:86 final size:86
Alignment explanation
Indices: 103950652--103950849 Score: 233
Period size: 86 Copynumber: 2.3 Consensus size: 86
103950642 ATCGAGATGA
* * *
103950652 GATTACATGTAAGACAATGTCTAGGACATTGGCATTGTATT-TCGATTAT-GTGTAAGACCATGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTAT-GATT-TCGTGTAAGACCATGT
* * *
103950715 CTGG-GACATTGGTATC-ATTATGT
64 C-GGTGACAGTGGCATCGA-TAAGT
* *
103950738 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTATGATTTCGTGTAAGACCCTGTCG
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTATGATTTCGTGTAAGACCATGTCG
103950803 GTGACAGTGGCATCGATAAGT
66 GTGACAGTGGCATCGATAAGT
* * *
103950824 GATAACATGTAAAACCATATCTGGGA
1 GATTACATGTAAGACCATGTCTGGGA
103950850 TATGGAATTG
Statistics
Matches: 96, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
85 3 0.03
86 91 0.95
87 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (86 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTATGATTTCGTGTAAGACCATGTCG
GTGACAGTGGCATCGATAAGT
Found at i:103950835 original size:43 final size:43
Alignment explanation
Indices: 103950652--103950849 Score: 179
Period size: 43 Copynumber: 4.6 Consensus size: 43
103950642 ATCGAGATGA
* * * * **
103950652 GATTACATGTAAGACAATGTCTAGGACATTGGCATTG-TATTT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATAAGT
* * *
103950694 CGATTATGTGTAAGACCATGTCTGGGACATTGGTATC-ATTATGT
1 -GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGA-TAAGT
*
103950738 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTA-T
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-ATAAGT
* * *
103950781 GATTTCGTGTAAGACCCTGTC-GGTGACAGTGGCATCGATAAGT
1 GATTACGTGTAAGACCATGTCTGG-GACATTGGCATCGATAAGT
* * * *
103950824 GATAACATGTAAAACCATATCTGGGA
1 GATTACGTGTAAGACCATGTCTGGGA
103950850 TATGGAATTG
Statistics
Matches: 127, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
42 5 0.04
43 114 0.90
44 7 0.06
45 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATAAGT
Found at i:103956307 original size:39 final size:40
Alignment explanation
Indices: 103956182--103956366 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
103956172 GCTACTCGTT
*
103956182 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
103956222 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
103956262 CCAATGCCTTCGGG-CTTAGCTCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
103956301 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
103956342 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
103956367 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:103956350 original size:79 final size:80
Alignment explanation
Indices: 103956182--103956366 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
103956172 GCTACTCGTT
* * *
103956182 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCAGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
103956246 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* * * **
103956263 CAATGCCTTC-GGGCTTAGCTCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCAGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
103956326 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
103956342 CAAAGCCTTCAGGACTTAGCCCGGA
1 CAAAGCCTTCAGGACTTAGCCCGGA
103956367 CATCATTCGA
Statistics
Matches: 86, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.66
80 23 0.27
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCAGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:103962120 original size:29 final size:29
Alignment explanation
Indices: 103962087--103962189 Score: 179
Period size: 29 Copynumber: 3.6 Consensus size: 29
103962077 AATTTAAGCC
* *
103962087 CGCACACATAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
103962116 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
103962145 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
103962174 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
103962190 ATCTCGTCAC
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:103962130 original size:58 final size:58
Alignment explanation
Indices: 103962058--103962189 Score: 169
Period size: 58 Copynumber: 2.3 Consensus size: 58
103962048 TACTCGATTT
* * *
103962058 CGCACACCTAGTGCCACGCA-ATTT-AAGCCCGCACACATAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCA--CATATTTCAAGCACGCACACATAGTGCCATATATTTCCAGCA
* * * *
103962116 TGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCACATATTTCAAGCACGCACACATAGTGCCATATATTTCCAGCA
103962174 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
103962190 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
56 1 0.02
57 4 0.06
58 59 0.92
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.25
Consensus pattern (58 bp):
CGCACACTTAGTGCCACATATTTCAAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:103964985 original size:40 final size:40
Alignment explanation
Indices: 103964925--103965108 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 40
103964915 TATTCGAATG
*
103964925 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
103964965 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
103965005 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
103965045 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
103965085 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
103965109 CTTGTGCGAG
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 122 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:103965058 original size:80 final size:80
Alignment explanation
Indices: 103964925--103965108 Score: 264
Period size: 80 Copynumber: 2.3 Consensus size: 80
103964915 TATTCGAATG
* * *
103964925 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
103964989 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* *
103965005 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
103965070 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
103965085 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
103965109 CTTGTGCGAG
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 91 0.97
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:103973362 original size:40 final size:40
Alignment explanation
Indices: 103973170--103973355 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
103973160 TCGAATGATG
* * *
103973170 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
103973210 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
103973250 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
103973290 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
** *
103973331 -CCGGACTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
103973356 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:103977117 original size:46 final size:44
Alignment explanation
Indices: 103977020--103977234 Score: 161
Period size: 46 Copynumber: 4.6 Consensus size: 44
103977010 GTAAGGTGCT
* * * *
103977020 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTA-CTC
1 GATG-CATGTCCCAGACAT-GTCTTACACAGGCTAT-GTCTTG-AGC-C
*
103977068 GATGCATGTCCCAGACATGTCTTACACCGGCTTATGTCTTGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACAGGC-TATGTCTTGA-GCC
* * *
103977114 GATGCATGTCCCAGACATGTCTTACATTAGCACTCATCTCGTT--GCC
1 GATGCATGTCCCAGACATGTCTTACA-CAG-GCT-ATGTC-TTGAGCC
*
103977160 GATGCATGTCCCAGACATGTCTTACACTA-GC-ACTCGTCTCGATGCC
1 GATGCATGTCCCAGACATGTCTTACAC-AGGCTA-T-GTCTTGA-GCC
103977206 GATGCTATGTCCCAGACATGGTCTTACAC
1 GATGC-ATGTCCCAGACAT-GTCTTACAC
103977235 TGGCGCTCAT
Statistics
Matches: 140, Mismatches: 12, Indels: 30
0.77 0.07 0.16
Matches are distributed among these distances:
42 1 0.01
43 2 0.01
44 3 0.02
45 1 0.01
46 80 0.57
47 33 0.24
48 18 0.13
49 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACAGGCTATGTCTTGAGCC
Found at i:103977183 original size:92 final size:92
Alignment explanation
Indices: 103977020--103977279 Score: 291
Period size: 92 Copynumber: 2.8 Consensus size: 92
103977010 GTAAGGTGCT
*
103977020 GATGCCATGTCCCAGACATGGTCTTACACTG-ACTATCATCTCG-TACTCGATGCATGTCCCAGA
1 GATG-CATGTCCCAGACATGGTCTTACACTGCAC--TCATCTCGTTGC-CGATGCATGTCCCAGA
* *
103977083 CATGTCTTACACCGGCTTA-T-GTCTTGAGGCC
62 CATGTCTTACACCAGC--ACTCGTCTCGAGGCC
*
103977114 GATGCATGTCCCAGACAT-GTCTTACATTAGCACTCATCTCGTTGCCGATGCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGGTCTTACACT-GCACTCATCTCGTTGCCGATGCATGTCCCAGACAT
* *
103977178 GTCTTACACTAGCACTCGTCTCGATGCC
65 GTCTTACACCAGCACTCGTCTCGAGGCC
* * * *
103977206 GATGCTATGTCCCAGACATGGTCTTACACTGGCGCTCATAAT-GTGGTCGATGCATGTCCCAGAC
1 GATGC-ATGTCCCAGACATGGTCTTACACT-GCACTCAT-CTCGTTGCCGATGCATGTCCCAGAC
103977270 A-GTCTTACAC
63 ATGTCTTACAC
103977280 TAGCTCACAA
Statistics
Matches: 146, Mismatches: 12, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
90 1 0.01
91 1 0.01
92 61 0.42
93 39 0.27
94 43 0.29
95 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGGTCTTACACTGCACTCATCTCGTTGCCGATGCATGTCCCAGACATG
TCTTACACCAGCACTCGTCTCGAGGCC
Found at i:103980759 original size:27 final size:27
Alignment explanation
Indices: 103980687--103980780 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 27
103980677 AAGGGCAAAA
* * *
103980687 CAGTCATTTTACCCTAC-AGGGATATGT
1 CAGTAATTTTACACTACAAGGG-TATTT
* *
103980714 CGGTCATTTTACACTACAAGGGTATTT
1 CAGTAATTTTACACTACAAGGGTATTT
*
103980741 CAGTAATTTTACACTACAAGAGTATTT
1 CAGTAATTTTACACTACAAGGGTATTT
*
103980768 CAATAATTTTACA
1 CAGTAATTTTACA
103980781 AATCGGGGGT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 55 0.93
28 4 0.07
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (27 bp):
CAGTAATTTTACACTACAAGGGTATTT
Found at i:103980801 original size:27 final size:27
Alignment explanation
Indices: 103980771--103981012 Score: 239
Period size: 27 Copynumber: 9.2 Consensus size: 27
103980761 AGTATTTCAA
* *
103980771 TAATTTTACAAATCGGGGGTGTTTTGG
1 TAATTTTACAAATCGAGGGTATTTTGG
* *
103980798 TAATTTTATAAATCGAGAGTATTTTGG
1 TAATTTTACAAATCGAGGGTATTTTGG
*
103980825 TAATTTTACAAATCGAGGGTATTTCGG
1 TAATTTTACAAATCGAGGGTATTTTGG
* * **
103980852 TAATTTTATAAATCGAGGGTGTTTCAG
1 TAATTTTACAAATCGAGGGTATTTTGG
103980879 TAATTTTACAAATCG-GAGGTATTTTGG
1 TAATTTTACAAATCGAG-GGTATTTTGG
* * **
103980906 TAATTTTATAAATTGAGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTTGG
* *
103980933 TAA-TTT----A--GAGGGTATTTCGA
1 TAATTTTACAAATCGAGGGTATTTTGG
* * *
103980953 TAATTTTACAAATCGGGGGTATTTCGA
1 TAATTTTACAAATCGAGGGTATTTTGG
**
103980980 TAATTTTACAAATCGAGGGTATTTAAG
1 TAATTTTACAAATCGAGGGTATTTTGG
103981007 TAATTT
1 TAATTT
103981013 CTCTTTATTA
Statistics
Matches: 181, Mismatches: 25, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
20 14 0.08
21 3 0.02
22 1 0.01
25 1 0.01
26 4 0.02
27 157 0.87
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTTGG
Found at i:103980801 original size:54 final size:54
Alignment explanation
Indices: 103980759--103981012 Score: 263
Period size: 54 Copynumber: 4.8 Consensus size: 54
103980749 TTACACTACA
* *
103980759 AGAGTATTTCAATAATTTTACAAATCGGGGGTGTTTTGGTAATTTTATAAATCG
1 AGAGTATTTCAGTAATTTTACAAATCGGGGGTATTTTGGTAATTTTATAAATCG
** * *
103980813 AGAGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTATAAATCG
1 AGAGTATTTCAGTAATTTTACAAATCGGGGGTATTTTGGTAATTTTATAAATCG
* * * *
103980867 AGGGTGTTTCAGTAATTTTACAAATCGGAGGTATTTTGGTAATTTTATAAATTG
1 AGAGTATTTCAGTAATTTTACAAATCGGGGGTATTTTGGTAATTTTATAAATCG
* * * * *
103980921 AGGGTATTTCAGTAA-TTT----A--GAGGGTATTTCGATAATTTTACAAATCG
1 AGAGTATTTCAGTAATTTTACAAATCGGGGGTATTTTGGTAATTTTATAAATCG
* * * **
103980968 GGGGTATTTC-GATAATTTTACAAATCGAGGGTATTTAAGTAATTT
1 AGAGTATTTCAG-TAATTTTACAAATCGGGGGTATTTTGGTAATTT
103981013 CTCTTTATTA
Statistics
Matches: 167, Mismatches: 25, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
46 1 0.01
47 34 0.20
48 3 0.02
49 1 0.01
52 1 0.01
53 3 0.02
54 124 0.74
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (54 bp):
AGAGTATTTCAGTAATTTTACAAATCGGGGGTATTTTGGTAATTTTATAAATCG
Found at i:103980828 original size:81 final size:81
Alignment explanation
Indices: 103980734--103981012 Score: 238
Period size: 81 Copynumber: 3.5 Consensus size: 81
103980724 ACACTACAAG
** * * **
103980734 GGTATTTCAGTAATTTTAC-ACTACAAGAGTATTTCAATAATTTTACAAATCGGGGGTGTTTTGG
1 GGTATTTTGGTAATTTTACAAAT-CAAGAGTATTTCAATAATTTTACAAATCGAGGGTGTTTCAG
*
103980798 TAATTTTATAAATC-GA
65 TAATTTTACAAATCGGA
* * ** *
103980814 GAGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTATAAATCGAGGGTGTTTCAG
1 G-GTATTTTGGTAATTTTACAAATCAAGAGTATTTCAATAATTTTACAAATCGAGGGTGTTTCAG
103980879 TAATTTTACAAATCGGA
65 TAATTTTACAAATCGGA
* ** * * *
103980896 GGTATTTTGGTAATTTTATAAATTGAGGGTATTTCAGTAA-TTT----A--GAGGGTATTTC-GA
1 GGTATTTTGGTAATTTTACAAATCAAGAGTATTTCAATAATTTTACAAATCGAGGGTGTTTCAG-
*
103980953 TAATTTTACAAATCGGG
65 TAATTTTACAAATCGGA
* * * *
103980970 GGTATTTCGATAATTTTACAAATCGAGGGTATTT-AAGTAATTT
1 GGTATTTTGGTAATTTTACAAATCAAGAGTATTTCAA-TAATTT
103981013 CTCTTTATTA
Statistics
Matches: 171, Mismatches: 22, Indels: 17
0.81 0.10 0.08
Matches are distributed among these distances:
73 2 0.01
74 59 0.35
75 2 0.01
76 1 0.01
80 4 0.02
81 98 0.57
82 5 0.03
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAATCAAGAGTATTTCAATAATTTTACAAATCGAGGGTGTTTCAGT
AATTTTACAAATCGGA
Found at i:103980973 original size:47 final size:47
Alignment explanation
Indices: 103980896--103980985 Score: 119
Period size: 47 Copynumber: 1.9 Consensus size: 47
103980886 ACAAATCGGA
* * * *
103980896 GGTATTTTGGTAATTTTATAAATTGAGGGTATTTC-AGTAATTTAGAG
1 GGTATTTCGATAATTTTACAAATCGAGGGTATTTCGA-TAATTTAGAG
*
103980943 GGTATTTCGATAATTTTACAAATCGGGGGTATTTCGATAATTT
1 GGTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTT
103980986 TACAAATCGA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
47 36 0.97
48 1 0.03
ACGTcount: A:0.29, C:0.06, G:0.22, T:0.43
Consensus pattern (47 bp):
GGTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTAGAG
Found at i:103980987 original size:74 final size:74
Alignment explanation
Indices: 103980866--103981012 Score: 215
Period size: 74 Copynumber: 2.0 Consensus size: 74
103980856 TTTATAAATC
* * * * * *
103980866 GAGGGTGTTTCAGTAATTTTACAAATCGGAGGTATTTTGGTAATTTTATAAATTGAGGGTATTTC
1 GAGGGTATTTCAGTAATTTTACAAATCGGAGGTATTTCGATAATTTTACAAATCGAGGGTATTTA
103980931 AGTAATTTA
66 AGTAATTTA
*
103980940 GAGGGTATTTC-GATAATTTTACAAATCGGGGGTATTTCGATAATTTTACAAATCGAGGGTATTT
1 GAGGGTATTTCAG-TAATTTTACAAATCGGAGGTATTTCGATAATTTTACAAATCGAGGGTATTT
103981004 AAGTAATTT
65 AAGTAATTT
103981013 CTCTTTATTA
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 1 0.02
74 64 0.98
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (74 bp):
GAGGGTATTTCAGTAATTTTACAAATCGGAGGTATTTCGATAATTTTACAAATCGAGGGTATTTA
AGTAATTTA
Found at i:103981373 original size:28 final size:28
Alignment explanation
Indices: 103981333--103981387 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
103981323 CTCTTTAGGC
* * *
103981333 CCAATCTCGTTCACGTGGCCCATCAGGG
1 CCAATCACATTCACATGGCCCATCAGGG
*
103981361 CCAATCACATTCATATGGCCCATCAGG
1 CCAATCACATTCACATGGCCCATCAGG
103981388 CAACTACTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.24, C:0.35, G:0.20, T:0.22
Consensus pattern (28 bp):
CCAATCACATTCACATGGCCCATCAGGG
Found at i:103985413 original size:46 final size:46
Alignment explanation
Indices: 103985346--103985517 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
103985336 AACCCGCCCC
* * *
103985346 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
* * *
103985392 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCA
* * * * *
103985440 TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
103985485 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
103985518 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 2 0.02
46 58 0.57
47 27 0.26
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
Found at i:103985458 original size:93 final size:93
Alignment explanation
Indices: 103985351--103985521 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
103985341 GCCCCTAAGT
* * *
103985351 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
103985416 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
103985444 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
103985509 CGAGTTCGGATGC
66 CGAGTTCGGATGC
103985522 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:103985975 original size:30 final size:30
Alignment explanation
Indices: 103985941--103986000 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
103985931 ATTTAATACG
103985941 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
103985971 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
103986001 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:103988503 original size:39 final size:39
Alignment explanation
Indices: 103988422--103988584 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
103988412 TATGGTAACC
* *
103988422 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
103988462 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
103988501 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
103988540 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
103988579 CGCACA
1 CGCACA
103988585 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:103996397 original size:39 final size:39
Alignment explanation
Indices: 103996316--103996478 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
103996306 TATGGTAACC
* *
103996316 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
103996356 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
103996395 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
103996434 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
103996473 CGCACA
1 CGCACA
103996479 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:104004495 original size:26 final size:26
Alignment explanation
Indices: 104004432--104004522 Score: 119
Period size: 27 Copynumber: 3.4 Consensus size: 26
104004422 GGGCAAAGTA
* **
104004432 ATAATTTTACCCTACAAGGACATGTCG
1 ATAATTTTACACTACAAGGGTAT-TCG
* *
104004459 GTCATTTTACACTACAAGGGTATTCG
1 ATAATTTTACACTACAAGGGTATTCG
104004485 ATAATTTTACACTACAAGGGTATTTCG
1 ATAATTTTACACTACAAGGGTA-TTCG
104004512 ATAATTTTACA
1 ATAATTTTACA
104004523 AATCAGGAGT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 23 0.41
27 33 0.59
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (26 bp):
ATAATTTTACACTACAAGGGTATTCG
Found at i:104004537 original size:27 final size:27
Alignment explanation
Indices: 104004473--104004866 Score: 351
Period size: 27 Copynumber: 14.7 Consensus size: 27
104004463 TTTTACACTA
*
104004473 CAAGGGTA-TTCGATAATTTTAC-ACT
1 CAAGGGTATTTCGATAATTTTACAAAT
104004498 ACAAGGGTATTTCGATAATTTTACAAAT
1 -CAAGGGTATTTCGATAATTTTACAAAT
* **
104004526 C-AGGAGTGTTTCGGCAATTTTACAAAT
1 CAAGG-GTATTTCGATAATTTTACAAAT
* * * *
104004553 TAAGGGTATTTTGGTAATTTTATAAAT
1 CAAGGGTATTTCGATAATTTTACAAAT
* *
104004580 CAGGGGTATTTCAATAATTTTACAAAT
1 CAAGGGTATTTCGATAATTTTACAAAT
* * *
104004607 CTAGGGTATTTTGATAATTTTATAAAT
1 CAAGGGTATTTCGATAATTTTACAAAT
* *
104004634 CAAGGGTGTTTC-AGTAATTTTAAAAAT
1 CAAGGGTATTTCGA-TAATTTTACAAAT
* * * *
104004661 CGAGAGTATTTCGGTAATTTTAAAAAT
1 CAAGGGTATTTCGATAATTTTACAAAT
* *
104004688 CGAGGGTATTTC-AGTAATTTCA-AAAT
1 CAAGGGTATTTCGA-TAATTTTACAAAT
*
104004714 CAAGGGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTCGATAATTTTACAAAT
* * *
104004741 CGATGGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTCGATAATTTTACAAAT
**
104004768 TGAGGGTATTTCG-TAA-TTT-CATAAT
1 CAAGGGTATTTCGATAATTTTACA-AAT
*
104004793 CGAGGGTATTTC-AGTAATTTTACAAAT
1 CAAGGGTATTTCGA-TAATTTTACAAAT
** *
104004820 CTGGGGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTCGATAATTTTACAAAT
**
104004847 TGAGGGTATTTC-AGTAATTT
1 CAAGGGTATTTCGA-TAATTT
104004867 CTTTTTATTA
Statistics
Matches: 306, Mismatches: 46, Indels: 31
0.80 0.12 0.08
Matches are distributed among these distances:
24 2 0.01
25 17 0.06
26 40 0.13
27 240 0.78
28 7 0.02
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCGATAATTTTACAAAT
Found at i:104004558 original size:54 final size:54
Alignment explanation
Indices: 104004500--104004866 Score: 417
Period size: 54 Copynumber: 6.9 Consensus size: 54
104004490 TTTACACTAC
* * * *
104004500 AAGGGTATTTCGATAATTTTACAAATC-AGGAGTGTTTCGGCAATTTTACAAATT
1 AAGGGTATTTCGGTAATTTTACAAATCGAGG-GTATTTCAGTAATTTTACAAATT
* * *
104004554 AAGGGTATTTTGGTAATTTTATAAATC-AGGGGTATTTCAATAATTTTACAAATCT
1 AAGGGTATTTCGGTAATTTTACAAATCGA-GGGTATTTCAGTAATTTTACAAAT-T
* * * * * * *
104004609 -AGGGTATTTTGATAATTTTATAAATCAAGGGTGTTTCAGTAATTTTAAAAATC
1 AAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATT
* * * * *
104004662 GAGAGTATTTCGGTAATTTTAAAAATCGAGGGTATTTCAGTAATTTCA-AAATC
1 AAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATT
* *
104004715 AAGGGTATTTCGGTAATTTTACAAATCGATGGTATTTCGGTAATTTTACAAATT
1 AAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATT
*
104004769 GAGGGTATTTC-GTAA-TTT-CATAATCGAGGGTATTTCAGTAATTTTACAAATCT
1 AAGGGTATTTCGGTAATTTTACA-AATCGAGGGTATTTCAGTAATTTTACAAAT-T
* *
104004822 -GGGGTATTTCGGTAATTTTACAAATTGAGGGTATTTCAGTAATTT
1 AAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
104004867 CTTTTTATTA
Statistics
Matches: 272, Mismatches: 31, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
51 2 0.01
52 40 0.15
53 56 0.21
54 168 0.62
55 6 0.02
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
AAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATT
Found at i:104004773 original size:80 final size:81
Alignment explanation
Indices: 104004473--104004867 Score: 423
Period size: 81 Copynumber: 4.9 Consensus size: 81
104004463 TTTTACACTA
* * * * * *
104004473 CAAGGGTA-TTCGATAATTTTAC-ACTACAAGGGTATTTCGATAATTTTACAAA-TCAGGAGTGT
1 CAAGGGTATTTCGGTAATTTTACAAAT-CGAGGGTATTTCGGTAATTTTACAAATTGAGG-GTAT
* * *
104004535 TTCGGCAATTTTACAAAT
64 TTCAGTAATTTCACAAAT
* * * **
104004553 TAAGGGTATTTTGGTAATTTTATAAATC-AGGGGTATTTCAATAATTTTACAAATCT-AGGGTAT
1 CAAGGGTATTTCGGTAATTTTACAAATCGA-GGGTATTTCGGTAATTTTACAAAT-TGAGGGTAT
* * *
104004616 TT-TGATAATTTTATAAAT
64 TTCAG-TAATTTCACAAAT
* * * * * *
104004634 CAAGGGTGTTTCAGTAATTTTAAAAATCGAGAGTATTTCGGTAATTTTAAAAATCGAGGGTATTT
1 CAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTGAGGGTATTT
104004699 CAGTAATTTCA-AAAT
66 CAGTAATTTCACAAAT
*
104004714 CAAGGGTATTTCGGTAATTTTACAAATCGATGGTATTTCGGTAATTTTACAAATTGAGGGTATTT
1 CAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTGAGGGTATTT
*
104004779 C-GTAATTTCA-TAAT
66 CAGTAATTTCACAAAT
* *
104004793 CGAGGGTATTTCAGTAATTTTACAAATCTG-GGGTATTTCGGTAATTTTACAAATTGAGGGTATT
1 CAAGGGTATTTCGGTAATTTTACAAATC-GAGGGTATTTCGGTAATTTTACAAATTGAGGGTATT
104004857 TCAGTAATTTC
65 TCAGTAATTTC
104004868 TTTTTATTAT
Statistics
Matches: 271, Mismatches: 33, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
79 73 0.27
80 81 0.30
81 109 0.40
82 7 0.03
83 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (81 bp):
CAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTGAGGGTATTT
CAGTAATTTCACAAAT
Found at i:104005225 original size:28 final size:28
Alignment explanation
Indices: 104005183--104005246 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
104005173 TGGCCCCTTT
*
104005183 AGGCCCAATCTCATTCACATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
* *
104005211 AGGCCTAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
104005239 AGGGCCAA
1 AGGCCCAA
104005247 CTACTTCCCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.28, C:0.34, G:0.17, T:0.20
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:104008872 original size:26 final size:26
Alignment explanation
Indices: 104008855--104008904 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
104008845 TTTGTGTCAG
*
104008855 TGTATATTTAGCATGCTTTGAGCCAC
1 TGTATATTTAGCAGGCTTTGAGCCAC
104008881 TGTATATTTAGCAGGCTTTGAGCC
1 TGTATATTTAGCAGGCTTTGAGCC
104008905 GATGTTTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (26 bp):
TGTATATTTAGCAGGCTTTGAGCCAC
Found at i:104011559 original size:52 final size:51
Alignment explanation
Indices: 104011410--104011574 Score: 134
Period size: 52 Copynumber: 3.3 Consensus size: 51
104011400 CGCCCATAAG
* * *
104011410 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACT
1 CGAACTCGAACTCAACTCAACGAGTTC-GGCATTCGCATCCATAAGTGAACT
* * * *
104011462 CG-----G-ACTCAACTCAACGAGTTCGG-ATGC-CTAGTTACATTCA-CGAACT
1 CGAACTCGAACTCAACTCAACGAGTTCGGCATTCGC-A--TCCA-TAAGTGAACT
104011508 CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACT
1 CGAACTCGAACTCAACTCAACGAGTTCGG-CATTCGCATCCATAAGTGAACT
*
104011560 CGGACTC-AACTCAAC
1 CGAACTCGAACTCAAC
104011575 GAGTTCGGAT
Statistics
Matches: 88, Mismatches: 11, Indels: 29
0.69 0.09 0.23
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 27 0.31
47 3 0.03
51 11 0.12
52 36 0.41
54 4 0.05
55 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (51 bp):
CGAACTCGAACTCAACTCAACGAGTTCGGCATTCGCATCCATAAGTGAACT
Found at i:104011579 original size:98 final size:98
Alignment explanation
Indices: 104011410--104011586 Score: 318
Period size: 98 Copynumber: 1.8 Consensus size: 98
104011400 CGCCCATAAG
* * *
104011410 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
104011475 ACGAGTTCGGATGCCTAGTTACATTCACGAACT
66 ACGAGTTCGGATGCCTAGTTACATTCACGAACT
*
104011508 CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
104011573 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
104011587 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 75 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (98 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTCACGAACT
Found at i:104011583 original size:46 final size:46
Alignment explanation
Indices: 104011403--104011583 Score: 211
Period size: 46 Copynumber: 3.8 Consensus size: 46
104011393 TGTAACCCGC
* * * *
104011403 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
104011449 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * * *
104011499 TCACGAACTCGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
104011547 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
104011584 TGCTCAACCA
Statistics
Matches: 113, Mismatches: 14, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
46 62 0.55
47 5 0.04
48 6 0.05
49 2 0.02
50 5 0.04
51 5 0.04
52 28 0.25
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:104024411 original size:40 final size:40
Alignment explanation
Indices: 104024337--104024482 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
104024327 CCGCACCAAG
* * * * * *
104024337 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
104024377 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
104024417 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
104024457 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
104024483 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:104024497 original size:40 final size:40
Alignment explanation
Indices: 104024369--104024520 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
104024359 ATCACGATTT
* * * * *
104024369 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
104024409 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
104024449 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
104024489 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
104024521 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:104027985 original size:27 final size:27
Alignment explanation
Indices: 104027949--104028000 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
104027939 TAGCTTGAGT
104027949 TTGATCATATAGCACTAAGTGTGCGAG
1 TTGATCATATAGCACTAAGTGTGCGAG
*
104027976 TTGATTATATAGCACTAAGTGTGCG
1 TTGATCATATAGCACTAAGTGTGCG
104028001 GACTCACTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (27 bp):
TTGATCATATAGCACTAAGTGTGCGAG
Found at i:104028011 original size:27 final size:27
Alignment explanation
Indices: 104027955--104028012 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
104027945 GAGTTTGATC
* * *
104027955 ATATAGCACTAAGTGTGCGAGTTGATT
1 ATATAGCACTAAGTGTGCGAGCTCACT
104027982 ATATAGCACTAAGTGTGCG-GACTCACT
1 ATATAGCACTAAGTGTGCGAG-CTCACT
104028009 ATAT
1 ATAT
104028013 GCTTTTGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (27 bp):
ATATAGCACTAAGTGTGCGAGCTCACT
Found at i:104035741 original size:27 final size:28
Alignment explanation
Indices: 104035685--104035754 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
104035675 AAATTTGTAC
104035685 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
104035713 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
104035740 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
104035755 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:104035765 original size:27 final size:27
Alignment explanation
Indices: 104035685--104035766 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
104035675 AAATTTGTAC
* *
104035685 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
104035713 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
104035740 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
104035767 GCTGTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:104049508 original size:46 final size:46
Alignment explanation
Indices: 104049458--104049633 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
104049448 TGGTTGAGCA
104049458 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
104049504 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
104049549 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
104049597 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
104049634 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:104049614 original size:93 final size:93
Alignment explanation
Indices: 104049455--104049626 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
104049445 GGATGGTTGA
*
104049455 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
104049520 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
104049548 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
104049612 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
104049627 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:104057069 original size:46 final size:46
Alignment explanation
Indices: 104057019--104057194 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
104057009 TGGTTGAGCA
104057019 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
104057065 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
104057110 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
104057158 -CTTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
104057195 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:104057175 original size:93 final size:93
Alignment explanation
Indices: 104057016--104057187 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
104057006 GGATGGTTGA
*
104057016 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
104057081 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
104057109 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGAG
104057173 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
104057188 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 1 0.01
93 74 0.99
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:104063959 original size:25 final size:25
Alignment explanation
Indices: 104063925--104064047 Score: 64
Period size: 24 Copynumber: 5.1 Consensus size: 25
104063915 AGCTTCCTAA
*
104063925 TATGGTTCTTTGTGAACTTCCCGAT
1 TATGGCTCTTTGTGAACTTCCCGAT
* * *
104063950 TATGGCTC-TTATGAGCTTCCCGTT
1 TATGGCTCTTTGTGAACTTCCCGAT
* * *
104063974 ATATAGC-C-TGGAT-AAGCTTCGCGA-
1 -TATGGCTCTTTG-TGAA-CTTCCCGAT
* * *
104063998 TA-GGCTTTTTGTTAACTTCTCGA-
1 TATGGCTCTTTGTGAACTTCCCGAT
*
104064021 TATGGCTCTTTGTGAGCTTCCC-AT
1 TATGGCTCTTTGTGAACTTCCCGAT
104064045 TAT
1 TAT
104064048 AAGGCTCGCG
Statistics
Matches: 72, Mismatches: 18, Indels: 17
0.67 0.17 0.16
Matches are distributed among these distances:
22 2 0.03
23 13 0.18
24 38 0.53
25 19 0.26
ACGTcount: A:0.18, C:0.21, G:0.20, T:0.41
Consensus pattern (25 bp):
TATGGCTCTTTGTGAACTTCCCGAT
Found at i:104063968 original size:24 final size:24
Alignment explanation
Indices: 104063897--104063975 Score: 72
Period size: 24 Copynumber: 3.2 Consensus size: 24
104063887 TAAGCACCAT
104063897 GATTATAGGCTCTTCATGAGCTT-CC
1 GATTAT-GGCTCTT-ATGAGCTTCCC
* * * * *
104063922 TAATATGGTTCTTTGTGAACTTCCC
1 GATTATGGCTC-TTATGAGCTTCCC
104063947 GATTATGGCTCTTATGAGCTTCCC
1 GATTATGGCTCTTATGAGCTTCCC
104063971 G-TTAT
1 GATTAT
104063976 ATAGCCTGGA
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
23 4 0.10
24 22 0.52
25 16 0.38
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.41
Consensus pattern (24 bp):
GATTATGGCTCTTATGAGCTTCCC
Found at i:104078045 original size:14 final size:14
Alignment explanation
Indices: 104078026--104078055 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
104078016 ATGAATTTTG
104078026 TATTTTAAAACTAT
1 TATTTTAAAACTAT
*
104078040 TATTTTGAAACTAT
1 TATTTTAAAACTAT
104078054 TA
1 TA
104078056 ATTCGATGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (14 bp):
TATTTTAAAACTAT
Found at i:104079776 original size:49 final size:49
Alignment explanation
Indices: 104079704--104079802 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
104079694 TTTATCATCA
104079704 AGTTTATTATTTTTATGGATTCTGTGAGGAACTAATCCTCTTATGGCGG
1 AGTTTATTATTTTTATGGATTCTGTGAGGAACTAATCCTCTTATGGCGG
104079753 AGTTTATTATTTTTATGGATTCTGTGAGGAACTAATCCTCTTATGGCGG
1 AGTTTATTATTTTTATGGATTCTGTGAGGAACTAATCCTCTTATGGCGG
104079802 A
1 A
104079803 TTAGCAAGTG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.23, C:0.12, G:0.22, T:0.42
Consensus pattern (49 bp):
AGTTTATTATTTTTATGGATTCTGTGAGGAACTAATCCTCTTATGGCGG
Found at i:104081531 original size:39 final size:39
Alignment explanation
Indices: 104081450--104081651 Score: 296
Period size: 39 Copynumber: 5.2 Consensus size: 39
104081440 TATGGTAACC
* * * *
104081450 CGCACAAATGCCTTTGGGACTTAACTCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
104081490 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
104081529 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* * *
104081568 CACACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
104081607 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
104081646 CGCACA
1 CGCACA
104081652 TTCATACACA
Statistics
Matches: 144, Mismatches: 18, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 128 0.89
40 16 0.11
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:104081574 original size:78 final size:78
Alignment explanation
Indices: 104081458--104081651 Score: 343
Period size: 78 Copynumber: 2.5 Consensus size: 78
104081448 CCCGCACAAA
* * *
104081458 TGCCTTTGGGACTTAACTCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
104081523 ATAGCTCGCACCAT
65 ATAGCTCGCACCAT
*
104081537 TGCCTTCGGGCTTAGCCCGGATATCACAACTCACACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
104081602 TAGCTCGCACCAT
66 TAGCTCGCACCAT
104081615 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
104081652 TTCATACACA
Statistics
Matches: 110, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
78 101 0.92
79 9 0.08
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.25
Consensus pattern (78 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
TAGCTCGCACCAT
Found at i:104086226 original size:40 final size:40
Alignment explanation
Indices: 104086118--104086327 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
104086108 CGGGATTTAA
* * * * *
104086118 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
104086158 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
104086198 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
104086238 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
104086278 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
104086318 CCGGATATAT
1 CCGGATATAT
104086328 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:104094359 original size:40 final size:40
Alignment explanation
Indices: 104094251--104094460 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
104094241 CGGGATTTAA
* * * * *
104094251 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
104094291 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
104094331 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
104094371 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
104094411 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
104094451 CCGGATATAT
1 CCGGATATAT
104094461 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:104097354 original size:80 final size:80
Alignment explanation
Indices: 104097194--104097361 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
104097184 TGAATGATAC
* * * *
104097194 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGAACAAATCCGGGCTAAGACCCGAAGGCATTCG
*
104097259 TGCGAGTTGTCATAT
66 TGCGAGTGGTCATAT
* * *
104097274 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAATCCGGGTTAAGACCCGAAGGCAATT
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGAACAAATCCGGGCTAAGACCCGAAGGC-ATT
** *
104097338 -GTGCTTGTGGTTATAT
64 CGTGCGAGTGGTCATAT
104097354 CC-GGCTAA
1 CCGGGCTAA
104097362 ATTTCGAAGA
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
79 6 0.08
80 65 0.87
81 4 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGAACAAATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTGGTCATAT
Found at i:104097356 original size:40 final size:40
Alignment explanation
Indices: 104097194--104097361 Score: 157
Period size: 40 Copynumber: 4.2 Consensus size: 40
104097184 TGAATGATAC
* * *
104097194 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAAT-ATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG-ATCATAT
*
104097234 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TCATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATCATAT
* * * *
104097274 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGATCATAT
* * * *
104097314 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATCATAT
104097354 CC-GGCTAA
1 CCGGGCTAA
104097362 ATTTCGAAGA
Statistics
Matches: 104, Mismatches: 18, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
39 9 0.09
40 91 0.88
41 4 0.04
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATCATAT
Found at i:104102909 original size:23 final size:23
Alignment explanation
Indices: 104102883--104102940 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
104102873 ATCACAGTGT
*
104102883 AGCTGCTAATAGTAATGCAGCAA
1 AGCTGCTAATAGAAATGCAGCAA
*
104102906 AGCTGCTAATAAAAATGCAGCAA
1 AGCTGCTAATAGAAATGCAGCAA
104102929 AGCTGCTAATAG
1 AGCTGCTAATAG
104102941 CGGTAAACGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (23 bp):
AGCTGCTAATAGAAATGCAGCAA
Found at i:104103578 original size:18 final size:19
Alignment explanation
Indices: 104103554--104103597 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
104103544 TCAGAGAAGC
104103554 AGGCCCACGTGGCCCATTG
1 AGGCCCACGTGGCCCATTG
**
104103573 -GGCCCATTTGGCCCATTG
1 AGGCCCACGTGGCCCATTG
104103591 AGGCCCA
1 AGGCCCA
104103598 GTACACGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.16, C:0.36, G:0.30, T:0.18
Consensus pattern (19 bp):
AGGCCCACGTGGCCCATTG
Found at i:104103595 original size:10 final size:9
Alignment explanation
Indices: 104103564--104103597 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
104103554 AGGCCCACGT
104103564 GGCCCATTG
1 GGCCCATTG
*
104103573 GGCCCATTT
1 GGCCCATTG
104103582 GGCCCATTG
1 GGCCCATTG
104103591 AGGCCCA
1 -GGCCCA
104103598 GTACACGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 16 0.73
10 6 0.27
ACGTcount: A:0.15, C:0.35, G:0.29, T:0.21
Consensus pattern (9 bp):
GGCCCATTG
Found at i:104108471 original size:14 final size:13
Alignment explanation
Indices: 104108448--104108479 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
104108438 GGAATATCAA
104108448 AACAATAATTAAG
1 AACAATAATTAAG
104108461 AACACATAATTAAG
1 AACA-ATAATTAAG
104108475 AACAA
1 AACAA
104108480 GTCAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:104112221 original size:10 final size:10
Alignment explanation
Indices: 104112206--104112230 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
104112196 GGCCCATTTA
104112206 GCCCATCGAG
1 GCCCATCGAG
104112216 GCCCATCGAG
1 GCCCATCGAG
104112226 GCCCA
1 GCCCA
104112231 GTACAAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.44, G:0.28, T:0.08
Consensus pattern (10 bp):
GCCCATCGAG
Found at i:104118804 original size:20 final size:20
Alignment explanation
Indices: 104118775--104118821 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
104118765 ATTTTGATAA
*
104118775 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
104118795 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
104118815 ACATGAT
1 ACATGAT
104118822 GTATTCATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:104118902 original size:23 final size:23
Alignment explanation
Indices: 104118872--104118991 Score: 204
Period size: 23 Copynumber: 5.1 Consensus size: 23
104118862 AGGAAGTGCA
104118872 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
104118895 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
104118918 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
104118941 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
104118964 AAAAGGGCTTTTTGCCCCAGTTATT
1 -AAAGGGC-TTATGCCCCAGTTATT
104118989 AAA
1 AAA
104118992 AGAGACTAGG
Statistics
Matches: 92, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
23 67 0.73
24 10 0.11
25 15 0.16
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.32
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:104119237 original size:31 final size:31
Alignment explanation
Indices: 104119202--104119264 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
104119192 CATTTACAGT
104119202 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
104119233 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
104119264 A
1 A
104119265 GTGTGAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:104120872 original size:33 final size:33
Alignment explanation
Indices: 104120793--104120945 Score: 173
Period size: 33 Copynumber: 4.6 Consensus size: 33
104120783 GTACATCATC
* * *
104120793 AATCCAACCAAACACACCAGATGCTCACT-CAAGCC
1 AATCCAACC-ATCACACCA-ATGCTCA-TAAAAGCT
* * *
104120828 AATCCACCCATCGCACCAATGGTCATAAAAGCT
1 AATCCAACCATCACACCAATGCTCATAAAAGCT
*
104120861 AATCCAACCATCACACCAATGCTCATAAGAGCT
1 AATCCAACCATCACACCAATGCTCATAAAAGCT
* *
104120894 AAACCAACCATCACACCAATGCTCATAAGAGCT
1 AATCCAACCATCACACCAATGCTCATAAAAGCT
**
104120927 AATCCAACCAAAACACCAA
1 AATCCAACCATCACACCAA
104120946 ATAGAGAGTA
Statistics
Matches: 103, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
32 1 0.01
33 87 0.84
34 7 0.07
35 8 0.08
ACGTcount: A:0.42, C:0.35, G:0.08, T:0.14
Consensus pattern (33 bp):
AATCCAACCATCACACCAATGCTCATAAAAGCT
Found at i:104120905 original size:66 final size:66
Alignment explanation
Indices: 104120793--104120945 Score: 191
Period size: 66 Copynumber: 2.3 Consensus size: 66
104120783 GTACATCATC
* * * * *
104120793 AATCCAACCAAACACACCAGATGCTCACTCAAGCCAATCCACCCATCGCACCAATGGTCATAAAA
1 AATCCAACC-AACACACCA-ATGCTCACTAAAGCCAAACCAACCATCACACCAATGCTCATAAAA
104120858 GCT
64 GCT
* * *
104120861 AATCCAACCATCACACCAATGCTCA-TAAGAGCTAAACCAACCATCACACCAATGCTCATAAGAG
1 AATCCAACCAACACACCAATGCTCACTAA-AGCCAAACCAACCATCACACCAATGCTCATAAAAG
104120925 CT
65 CT
*
104120927 AATCCAACCAAAACACCAA
1 AATCCAACCAACACACCAA
104120946 ATAGAGAGTA
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
65 2 0.03
66 55 0.74
67 8 0.11
68 9 0.12
ACGTcount: A:0.42, C:0.35, G:0.08, T:0.14
Consensus pattern (66 bp):
AATCCAACCAACACACCAATGCTCACTAAAGCCAAACCAACCATCACACCAATGCTCATAAAAGC
T
Found at i:104125555 original size:38 final size:38
Alignment explanation
Indices: 104125483--104125681 Score: 263
Period size: 38 Copynumber: 5.2 Consensus size: 38
104125473 GCTCGAAAGG
* * * *
104125483 CCCGAATATAATACCAGCACTAGGCGTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* **
104125521 CCCGGATATAATACCAGTACGAAGCCTGTAGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
104125559 TCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
104125597 CCCAGATATAATACCAGCATGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * * *
104125635 CCCAGATATATTACCAGTATGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
104125673 CCCGGATAT
1 CCCGGATAT
104125682 CATATTTCGA
Statistics
Matches: 142, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 142 1.00
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:104130851 original size:38 final size:38
Alignment explanation
Indices: 104130800--104130998 Score: 224
Period size: 38 Copynumber: 5.2 Consensus size: 38
104130790 GGATCAAAGG
* * *
104130800 CCCGAATATAATACCAGCACTAGGCCTACGAGATTTAA
1 CCCGGATATAATACCAGCACTAAGCCTACGGGATTTAA
** ***
104130838 CCC-GATTATAATACCAGCACGGAGCCTGTAGGATTTAA
1 CCCGGA-TATAATACCAGCACTAAGCCTACGGGATTTAA
* * **
104130876 CCCGGATATATTACCAGCACGAAGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACTAAGCCTACGGGATTTAA
*
104130914 CCCGGATATAATACCAGCA-TGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACT-AAGCCTACGGGATTTAA
*
104130952 CCCGGATATATTACCAGCA-TGAAGCCTACGGGATTTAA
1 CCCGGATATAATACCAGCACT-AAGCCTACGGGATTTAA
104130990 CCCGGATAT
1 CCCGGATAT
104130999 CATATTTCGA
Statistics
Matches: 142, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
37 1 0.01
38 139 0.98
39 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.23
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACTAAGCCTACGGGATTTAA
Found at i:104130931 original size:76 final size:76
Alignment explanation
Indices: 104130800--104130998 Score: 274
Period size: 76 Copynumber: 2.6 Consensus size: 76
104130790 GGATCAAAGG
* * * * * *
104130800 CCCGAATATAATACCAGCACTAGGCCTACGAGATTTAACCC-GATTATAATACCAGCACGGAGCC
1 CCCGGATATATTACCAGCACGAAGCCTACGGGATTTAACCCGGA-TATAATACCAGCACGAAGCC
*
104130864 TGTAGGATTTAA
65 TGCAGGATTTAA
** *
104130876 CCCGGATATATTACCAGCACGAAGCCTGTGGGATTTAACCCGGATATAATACCAGCATGAAGCCT
1 CCCGGATATATTACCAGCACGAAGCCTACGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
*
104130941 GCGGGATTTAA
66 GCAGGATTTAA
*
104130952 CCCGGATATATTACCAGCATGAAGCCTACGGGATTTAACCCGGATAT
1 CCCGGATATATTACCAGCACGAAGCCTACGGGATTTAACCCGGATAT
104130999 CATATTTCGA
Statistics
Matches: 108, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
76 106 0.98
77 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.23
Consensus pattern (76 bp):
CCCGGATATATTACCAGCACGAAGCCTACGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
GCAGGATTTAA
Found at i:104136436 original size:23 final size:23
Alignment explanation
Indices: 104136410--104136455 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
104136400 GTATTATTGG
* *
104136410 ACCAAAGTGCCAGTAACATAAGT
1 ACCAAAGTACCAGTAACAAAAGT
*
104136433 ACCAAAGTACTAGTAACAAAAGT
1 ACCAAAGTACCAGTAACAAAAGT
104136456 CTCCTATTGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.48, C:0.20, G:0.15, T:0.17
Consensus pattern (23 bp):
ACCAAAGTACCAGTAACAAAAGT
Found at i:104136786 original size:30 final size:30
Alignment explanation
Indices: 104136729--104136788 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
104136719 ATAGAGACTC
*
104136729 TGATAAAGCATTGTAATCACCCCTTTTGAT
1 TGATAAAGCATTGTAATCACCCATTTTGAT
* *
104136759 TGATAAAGCATTGTAATTAGCCATTTTGAT
1 TGATAAAGCATTGTAATCACCCATTTTGAT
104136789 CAATAAAGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (30 bp):
TGATAAAGCATTGTAATCACCCATTTTGAT
Found at i:104136795 original size:30 final size:30
Alignment explanation
Indices: 104136731--104136796 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
104136721 AGAGACTCTG
* **
104136731 ATAAAGCATTGTAATCACCCCTTTTGATTG
1 ATAAAGCATTGTAATCACCCATTTTGATCA
* *
104136761 ATAAAGCATTGTAATTAGCCATTTTGATCA
1 ATAAAGCATTGTAATCACCCATTTTGATCA
104136791 ATAAAG
1 ATAAAG
104136797 TACATCCTCT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (30 bp):
ATAAAGCATTGTAATCACCCATTTTGATCA
Found at i:104138639 original size:43 final size:43
Alignment explanation
Indices: 104138481--104138628 Score: 201
Period size: 43 Copynumber: 3.4 Consensus size: 43
104138471 CGAGATTACA
* **
104138481 TGTAAGACCATGTCTGGGACATTGGCATTG-TATTTTGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTA-TACGATTATG
* *
104138524 TGTAAGACCATGTCTAGGACATTGGCATCATTATACGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTATACGATTATG
104138567 TGTAAGACCATGTCTGGGACATTGGCATCGTTA-ATCGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTATA-CGATTATG
* *
104138610 TGTAAGACCCTCTCTGGGA
1 TGTAAGACCATGTCTGGGA
104138629 TAGTAGCATC
Statistics
Matches: 94, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
42 1 0.01
43 91 0.97
44 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTTATACGATTATG
Found at i:104138658 original size:86 final size:86
Alignment explanation
Indices: 104138482--104138679 Score: 204
Period size: 86 Copynumber: 2.3 Consensus size: 86
104138472 GAGATTACAT
* * * * *
104138482 GTAAGACCATGTCTGGGACATTGGCATTGTATTTTGATTATGTGTAAGACCATGTCTAGGACATT
1 GTAAGACCATGTCTGGGACATTGGCATCGTATATCGATTATGTGTAAGACCATCTCTAGGACAGT
* * ***
104138547 GGCATCATTATACGATTATGT
66 AGCATCATTATACGATAACAA
* * *
104138568 GTAAGACCATGTCTGGGACATTGGCATCGT-TAATCGATTATGTGTAAGACCCTCTCTGGGATAG
1 GTAAGACCATGTCTGGGACATTGGCATCGTAT-ATCGATTATGTGTAAGACCATCTCTAGGACAG
**
104138632 TAGCATCGA-TATGTGATAACAA
65 TAGCATC-ATTATACGATAACAA
* *
104138654 GTAAGACCATATCTGGGA-TTTGGCAT
1 GTAAGACCATGTCTGGGACATTGGCAT
104138680 TGTACAAGCT
Statistics
Matches: 93, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
85 8 0.09
86 84 0.90
87 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (86 bp):
GTAAGACCATGTCTGGGACATTGGCATCGTATATCGATTATGTGTAAGACCATCTCTAGGACAGT
AGCATCATTATACGATAACAA
Found at i:104141636 original size:47 final size:45
Alignment explanation
Indices: 104141567--104141735 Score: 178
Period size: 49 Copynumber: 3.6 Consensus size: 45
104141557 CATGGGATAA
* *
104141567 GATGCCATGTCCCAGATAGGTCTTACACTGACTAGCACATCAAAGTT
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTA-CACATC-AAGCT
* * * *
104141614 GATGCCATGTCCCAGATAGGTCTTACACTGACTTCCATATATCGAGGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTGAC-T--ACACATC-AAGCT
* * *
104141663 AATGCCATGTCCCAGACAGGTCTTACACTAAC-ACACAACAAGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTACACATCAAGCT
* *
104141707 GACGCCATGTCACAGACAGGTCTTACACT
1 GATGCCATGTCCCAGACAGGTCTTACACT
104141736 AGCTTGTATA
Statistics
Matches: 104, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
44 30 0.29
45 4 0.04
47 32 0.31
48 1 0.01
49 36 0.35
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (45 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTACACATCAAGCT
Done.