Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 335 of 433
Found at i:104842953 original size:42 final size:42
Alignment explanation
Indices: 104842894--104843099 Score: 245
Period size: 42 Copynumber: 4.9 Consensus size: 42
104842884 ATTAGGGTTT
* * * *
104842894 TGAGATTACGTGTAAGACCATATTTGGGATATGGAATC-AGTG
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGA-TA
* *
104842936 TGAGATTTCATGTAAGACCATACCTGGGATATGGCATCGATA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
*
104842978 TGAGATTTCGTGTAAGACCATATCTGGGACATGGCATCGATA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
* * *
104843020 TGAGACTTT-GTGTAAGACCATAGCTGGGCTATTGGCATCGAAA
1 TGAGA-TTTCGTGTAAGACCATATCTGGGATA-TGGCATCGATA
** * *
104843063 TGAGATCCCATGTAAGACCATATCTAGGATATGGCAT
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCAT
104843100 TGGTATGGTA
Statistics
Matches: 141, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
42 104 0.74
43 37 0.26
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (42 bp):
TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:104848854 original size:35 final size:35
Alignment explanation
Indices: 104848808--104848913 Score: 203
Period size: 35 Copynumber: 3.0 Consensus size: 35
104848798 TGGGCTTTTG
*
104848808 CAAGAAAGTTTTAATTTTATGAAATAAACCCTTGC
1 CAAGAAAGTTTTATTTTTATGAAATAAACCCTTGC
104848843 CAAGAAAGTTTTATTTTTATGAAATAAACCCTTGC
1 CAAGAAAGTTTTATTTTTATGAAATAAACCCTTGC
104848878 CAAGAAAGTTTTATTTTTATGAAATAAACCCTTGC
1 CAAGAAAGTTTTATTTTTATGAAATAAACCCTTGC
104848913 C
1 C
104848914 TTTAGTTGAT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
35 70 1.00
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (35 bp):
CAAGAAAGTTTTATTTTTATGAAATAAACCCTTGC
Found at i:104853351 original size:40 final size:40
Alignment explanation
Indices: 104853224--104853353 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
104853214 ATGCTGGAAA
* *
104853224 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
104853264 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
104853304 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
104853344 TTATATCCGG
1 TTATATCCGG
104853354 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:104864913 original size:27 final size:27
Alignment explanation
Indices: 104864883--104864936 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
104864873 ATGACCAAAA
*
104864883 TACCCCTATAGGGTAAATTGACT-ATTT
1 TACCCCTAGAGGGTAAA-TGACTGATTT
*
104864910 TACCCCTCGAGGGTAAATGACTGATTT
1 TACCCCTAGAGGGTAAATGACTGATTT
104864937 GTGCTATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAATGACTGATTT
Found at i:104871254 original size:17 final size:18
Alignment explanation
Indices: 104871227--104871260 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
104871217 AATTAAATAT
104871227 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
104871245 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
104871261 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:104871452 original size:25 final size:24
Alignment explanation
Indices: 104871435--104871485 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
104871425 ATATATAAAG
104871435 TTGATAATAATTAATATATATTATAA
1 TTGAT-ATAATT-ATATATATTATAA
*
104871461 TTGATATAATTATATAT-TAATAA
1 TTGATATAATTATATATATTATAA
104871484 TT
1 TT
104871486 ATCATCTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 7 0.29
24 6 0.25
25 6 0.25
26 5 0.21
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (24 bp):
TTGATATAATTATATATATTATAA
Found at i:104871462 original size:16 final size:15
Alignment explanation
Indices: 104871441--104871482 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
104871431 AAAGTTGATA
104871441 ATAATTAATATATATT
1 ATAATTAATATA-ATT
*
104871457 ATAATTGATATAATT
1 ATAATTAATATAATT
104871472 ATATATTAATA
1 ATA-ATTAATA
104871483 ATTATCATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (15 bp):
ATAATTAATATAATT
Found at i:104873407 original size:28 final size:28
Alignment explanation
Indices: 104873375--104873430 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
104873365 TCTTAGAGAG
104873375 TAAGTACTTAATAGACAATCACTTTGGT
1 TAAGTACTTAATAGACAATCACTTTGGT
104873403 TAAGTACTTAATAGACAATCACTTTGGT
1 TAAGTACTTAATAGACAATCACTTTGGT
104873431 ACCTACAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (28 bp):
TAAGTACTTAATAGACAATCACTTTGGT
Found at i:104885087 original size:42 final size:42
Alignment explanation
Indices: 104885030--104885284 Score: 260
Period size: 42 Copynumber: 6.0 Consensus size: 42
104885020 ATTAGGGTTT
* * * * *
104885030 TGAGATTACGTGTAAGACCATATCTAGGATATGGCATCGGTC
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATTGATA
* * * *
104885072 TGATATTTCATGTAAGGCCGTATCTGGGATATGGCATTGATA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATTGATA
* * * * *
104885114 TGAGACTTCGTGGAAGACCATATCTAGGATATGG-AATAAGTA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATTGA-TA
* *
104885156 TAAGATTTCGTGTAAGACCATATCTGAGATATGGCATTGATA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATTGATA
* * * *
104885198 TGAGACTTCGTGTAAGACCATAGCTGGGCTATTGGCATTGAAA
1 TGAGATTTCGTGTAAGACCATATCTGGGATA-TGGCATTGATA
* ** * *
104885241 CGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGGTA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATTGATA
104885283 TG
1 TG
104885285 GCATTGTGCA
Statistics
Matches: 169, Mismatches: 41, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
41 3 0.02
42 129 0.76
43 37 0.22
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (42 bp):
TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATTGATA
Found at i:104887907 original size:30 final size:29
Alignment explanation
Indices: 104887871--104887941 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 29
104887861 TGTATTATTC
*
104887871 TTTTTGTATGTCAT-TCATTATTTTATTACT
1 TTTTTGTATGTCATGT-ATTATTTAATTA-T
*
104887901 TTTTTGTATATCATGTATTATTTAATTAT
1 TTTTTGTATGTCATGTATTATTTAATTAT
*
104887930 TACTTTGTATGT
1 T-TTTTGTATGT
104887942 TTGTACGTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
29 2 0.06
30 32 0.91
31 1 0.03
ACGTcount: A:0.23, C:0.07, G:0.08, T:0.62
Consensus pattern (29 bp):
TTTTTGTATGTCATGTATTATTTAATTAT
Found at i:104899443 original size:71 final size:71
Alignment explanation
Indices: 104899359--104899522 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
104899349 CGATTTGTCT
104899359 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
104899424 CTTTCA
66 CTTTCA
104899430 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
104899495 CTTTCA
66 CTTTCA
104899501 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
104899523 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:104899560 original size:71 final size:70
Alignment explanation
Indices: 104899359--104899556 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
104899349 CGATTTGTCT
* * * *
104899359 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
104899424 CTTTCA
65 CTTTCA
* * * *
104899430 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
104899495 CTTTCA
65 CTTTCA
* *
104899501 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
104899557 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:104907011 original size:71 final size:71
Alignment explanation
Indices: 104906927--104907090 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
104906917 CGATTTGTCT
104906927 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
104906992 CTTTCA
66 CTTTCA
104906998 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
104907063 CTTTCA
66 CTTTCA
104907069 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
104907091 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:104907128 original size:71 final size:70
Alignment explanation
Indices: 104906927--104907124 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
104906917 CGATTTGTCT
* * * *
104906927 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
104906992 CTTTCA
65 CTTTCA
* * * *
104906998 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
104907063 CTTTCA
65 CTTTCA
* *
104907069 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
104907125 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:104910605 original size:205 final size:204
Alignment explanation
Indices: 104909939--104911003 Score: 1251
Period size: 205 Copynumber: 5.1 Consensus size: 204
104909929 GCAAATTAAG
* * * *
104909939 ATCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATTTCCACTGT-GATGGAAGGCAGACACA
1 ATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACT-TCGACGGAGGGCAGACACA
* * *
104910003 TAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTT---ATCTTT
65 TAGCAGATC-CACCTTCAGATGTTTACACTGAAGTAGATCCAAGATG---G-T-TTGGCATCCTT
* * * * * * * * * *
104910065 CTGTATTCGGCAGGGAACAGATCGAAGATATAGATGATTTGGCTTTCACGTGTTTACGATGAAGC
124 GTG-CTT--ACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGC
*
104910130 AAATCTAAGATGATTTGTC
186 AAATCTAAGATGATTTGGC
** * * * * * **
104910149 GCCTCTATATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGATGCAT
1 ATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGACACAT
* *** ***
104910214 AGCAGATCTCACCTTCAGATGTTTACGCTGAAGTAGATCCAAGATGACAAATCTTATCTCTCTGT
66 AGCAGATC-CACCTTCAGATGTTTACACTGAAGTAGATCCAAGATG--GTTTGGCATC-CT-TGT
* * ** * * * * *
104910279 -ATTCGGCGGGGAGCAGATCAAAGATATAGCTGATTTGACTTTCACGTGTTTACGTTGAAGCAAA
126 GCTT--ACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAA
*
104910343 GCTAAGATGATTTGGC
189 TCTAAGATGATTTGGC
**
104910359 ATCTCTGTATTGTCAGAGAACAAATCGAAGTCTATCATCTCCACTTCGACGGAGGGCAGACACAT
1 ATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGACACAT
*
104910424 AGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTT
66 AGCAGATCC-ACCTTCAGATGTTTACACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTT
* * * *
104910489 ACAAGGAGAAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTGCGTTGAAACAAGTCTAAG
130 ACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAG
104910554 ATGATTTGGC
195 ATGATTTGGC
104910564 ATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGACACAT
1 ATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGACACAT
* * *
104910629 AGCAGATCCAAACTTCAGATGTTTATACTGAAGTAAATCCAAGATGGTTTGGCATCCTTGTGCTT
66 AGCAGATCC-ACCTTCAGATGTTTACACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTT
*
104910694 ACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGAAAATCTAAG
130 ACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAG
104910759 ATGATTTGGC
195 ATGATTTGGC
*
104910769 ATCTCTGTATTGTCAGAGAACAAATTGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGACACAT
1 ATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGACACAT
* *** * ** *
104910834 AGCAGATCTGACCTTCAGACAATTAGACTGAAACAAGATCCAAGATGATTTGGCATCCTTGTGC-
66 AGCAGATC-CACCTTCAGATGTTTACACTG-AAGTAGATCCAAGATGGTTTGGCATCCTTGTGCT
* * * * *
104910898 TACAAGGAGCAAATTGAAGACATAGCTGATTTAGTTTTCACGTGCTTATGATGAAGCAAATCTAA
129 TACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAA
**
104910963 GATGATTTATC
194 GATGATTTGGC
*
104910974 ATCTCTGTATTGTCAGAGAACAAATTGAAG
1 ATCTCTGTATTGTCAGAGAACAAATCGAAG
104911004 AAGCAGATTT
Statistics
Matches: 762, Mismatches: 83, Indels: 25
0.88 0.10 0.03
Matches are distributed among these distances:
205 443 0.58
206 32 0.04
207 5 0.01
208 4 0.01
209 2 0.00
210 273 0.36
211 1 0.00
212 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (204 bp):
ATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGACACAT
AGCAGATCCACCTTCAGATGTTTACACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTA
CAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGA
TGATTTGGC
Found at i:104910850 original size:410 final size:413
Alignment explanation
Indices: 104909806--104911003 Score: 1308
Period size: 410 Copynumber: 2.9 Consensus size: 413
104909796 CTGTAGCATT
* * * * **
104909806 GCAGATCTCACCTTCAGATGTTTACGCTGAAGTAGATCCAAGATGACAGATCTTATCTCTCTGTA
1 GCAGATCTCAACTTCAGATGTTTACACTGAAGTAAATCCAAGATGA-AAATCGCATCTCTCTGTA
** ** * * * *
104909871 TTTGGCGGGGAGCAGATCAAAGATATAGCTGATTTGACTTTCACGTGTTTAC---GATG--AAGC
65 -TTCACAAGGAGCAAATCAAAGACATAGCTGATTTGACTTTCACGTGCTTACGTTGAAGAAAAGC
** * * *
104909931 --A-A--ATTAAG-ATCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATTTCCACTGT-GAT
129 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACT-TCGAC
* * * *
104909989 GGAAGGCAGACACATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAG
193 GGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTACACTGAAGAAGATCCAAGATG---G
* * * * * *
104910054 ATCTT---ATCTTTCTG-TATTCGGCAGG-GAACAGATCGAAGATATAGATGATTTGGCTTTCAC
255 -T-TTGGCATCCTTGTGCT-TAC--AAGGAGAA-A-ATCGAAGACATAGCTGATTTGGCTTTCAC
* ** *
104910114 GTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGCCTCTATATTGTCAGAGAACAAATCGAAG
313 GTGCTTACGATGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * **
104910179 TCTGGCATTTCCACTTTGATGGAAGGCAGATGCATA
378 TCTGGCATCTCCACTTCGACGGAAGGCAGACACATA
* * * **
104910215 GCAGATCTCACCTTCAGATGTTTACGCTGAAGTAGATCCAAGATGACAAATCTTATCTCTCTGTA
1 GCAGATCTCAACTTCAGATGTTTACACTGAAGTAAATCCAAGATGA-AAATCGCATCTCTCTGTA
* ** * * * *
104910280 TTCGGCGGGGAGCAGATCAAAGATATAGCTGATTTGACTTTCACGTGTTTACGTTGAAGCAAAGC
65 TTC-ACAAGGAGCAAATCAAAGACATAGCTGATTTGACTTTCACGTGCTTACGTTGAAGAAAAGC
**
104910345 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTATCATCTCCACTTCGACG
129 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACG
* * *
104910410 GAGGGCAGACACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTG
194 GAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTACACTGAAGAAGATCCAAGATGGTTTG
* *
104910475 GCATCCTTGTGCTTACAAGGAGAAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTGCGTT
259 GCATCCTTGTGCTTACAAGGAGAAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGAT
* * *
104910540 GAAACAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTC
324 GAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTC
*
104910605 CACTTCGACGGAGGGCAGACACATA
389 CACTTCGACGGAAGGCAGACACATA
* *** *
104910630 GCAGATC-CAAACTTCAGATGTTTATACTGAAGTAAATCCAAGATG-GTTTGGCATC-CT-TGTG
1 GCAGATCTC-AACTTCAGATGTTTACACTGAAGTAAATCCAAGATGAAAATCGCATCTCTCTGT-
* * * *
104910691 CTT-ACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGAAAATC
64 ATTCACAAGGAGCAAATCAAAGACATAGCTGATTTGACTTTCACGTGCTTACGTTGAAGAAAAGC
*
104910755 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTCTGGCATCTCCACTTCGACG
129 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACG
* *** * * *
104910820 GAGGGCAGACACATAGCAGATCTGACCTTCAGACAATTAGACTGAAACAAGATCCAAGATGATTT
194 GAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTACACTG-AAGAAGATCCAAGATGGTTT
* * * * *
104910885 GGCATCCTTGTGC-TACAAGGAGCAAATTGAAGACATAGCTGATTTAGTTTTCACGTGCTTATGA
258 GGCATCCTTGTGCTTACAAGGAGAAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGA
* *
104910949 TGAAGCAAATCTAAGATGATTTATCATCTCTGTATTGTCAGAGAACAAATTGAAG
323 TGAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAG
104911004 AAGCAGATTT
Statistics
Matches: 686, Mismatches: 82, Indels: 41
0.85 0.10 0.05
Matches are distributed among these distances:
408 2 0.00
409 112 0.16
410 245 0.36
411 33 0.05
412 7 0.01
413 4 0.01
414 5 0.01
415 154 0.22
416 6 0.01
417 5 0.01
418 9 0.01
419 6 0.01
420 98 0.14
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (413 bp):
GCAGATCTCAACTTCAGATGTTTACACTGAAGTAAATCCAAGATGAAAATCGCATCTCTCTGTAT
TCACAAGGAGCAAATCAAAGACATAGCTGATTTGACTTTCACGTGCTTACGTTGAAGAAAAGCTA
AGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGA
GGGCAGACACATAGCAGATCTAACCTTCAGATGTTTACACTGAAGAAGATCCAAGATGGTTTGGC
ATCCTTGTGCTTACAAGGAGAAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGA
AGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCA
CTTCGACGGAAGGCAGACACATA
Found at i:104912686 original size:21 final size:21
Alignment explanation
Indices: 104912655--104912696 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
104912645 ACACTATAAG
104912655 ATTATTTTATCATATATATATT
1 ATTATTTTATCATATAT-TATT
*
104912677 ATTA-TTTATCGTATATTATT
1 ATTATTTTATCATATATTATT
104912697 TTTCACAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 11 0.58
22 4 0.21
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (21 bp):
ATTATTTTATCATATATTATT
Found at i:104913448 original size:33 final size:31
Alignment explanation
Indices: 104913376--104913448 Score: 89
Period size: 30 Copynumber: 2.4 Consensus size: 31
104913366 ATTGATATTG
*
104913376 TATTATT-C-TTTTTGTATGTCATGCATTAT
1 TATTATTACTTTTTTGTATATCATGCATTAT
*
104913405 T-TTATTACTTTTTTGTATATCATGTATTATT
1 TATTATTACTTTTTTGTATATCATGCATTA-T
104913436 TAATTATTACTTT
1 T-ATTATTACTTT
104913449 GTATGTTTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
28 5 0.14
29 2 0.05
30 18 0.49
31 2 0.05
33 10 0.27
ACGTcount: A:0.23, C:0.08, G:0.07, T:0.62
Consensus pattern (31 bp):
TATTATTACTTTTTTGTATATCATGCATTAT
Found at i:104915422 original size:25 final size:23
Alignment explanation
Indices: 104915394--104915461 Score: 57
Period size: 26 Copynumber: 2.7 Consensus size: 23
104915384 AATATTATTT
*
104915394 TAATAGTTTAATATTAAATTTAATC
1 TAATA-TTTAATATTAAATTT-ATA
*
104915419 TAATATTT-ATCTTGATAAATTTATA
1 TAATATTTAAT-AT--TAAATTTATA
104915444 TAATAATTTAATATTAAA
1 TAAT-ATTTAATATTAAA
104915462 GTGATTAAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 11
0.71 0.06 0.22
Matches are distributed among these distances:
23 2 0.06
24 8 0.23
25 11 0.31
26 12 0.34
27 2 0.06
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (23 bp):
TAATATTTAATATTAAATTTATA
Found at i:104920677 original size:21 final size:21
Alignment explanation
Indices: 104920653--104920697 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
104920643 TAGAAAGAAT
104920653 AAATAATGA-AAAAAAAAAGGA
1 AAAT-ATGATAAAAAAAAAGGA
* *
104920674 AAATATGATGAAAACAAAGGA
1 AAATATGATAAAAAAAAAGGA
104920695 AAA
1 AAA
104920698 AAAAAGTGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.71, C:0.02, G:0.16, T:0.11
Consensus pattern (21 bp):
AAATATGATAAAAAAAAAGGA
Found at i:104920940 original size:7 final size:7
Alignment explanation
Indices: 104920928--104920952 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
104920918 GTTGTCTTCT
104920928 TGTTTGA
1 TGTTTGA
104920935 TGTTTGA
1 TGTTTGA
104920942 TGTTTGA
1 TGTTTGA
104920949 TGTT
1 TGTT
104920953 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:104921882 original size:27 final size:28
Alignment explanation
Indices: 104921826--104921895 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
104921816 AAATTTGTAC
104921826 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
104921854 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
104921881 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
104921896 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:104928729 original size:7 final size:7
Alignment explanation
Indices: 104928717--104928741 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
104928707 GTTGTCTTCT
104928717 TGTTTGA
1 TGTTTGA
104928724 TGTTTGA
1 TGTTTGA
104928731 TGTTTGA
1 TGTTTGA
104928738 TGTT
1 TGTT
104928742 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:104929675 original size:27 final size:28
Alignment explanation
Indices: 104929619--104929688 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
104929609 AAATTTGTAC
104929619 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
104929647 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
104929674 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
104929689 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:104935644 original size:29 final size:29
Alignment explanation
Indices: 104935611--104935742 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
104935601 GTGACGAGAT
104935611 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
104935640 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
104935669 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
104935698 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
104935727 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
104935743 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:104942950 original size:29 final size:29
Alignment explanation
Indices: 104942917--104943048 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
104942907 GTGACGAGAT
104942917 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
104942946 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
104942975 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
104943004 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
104943033 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
104943049 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:104950547 original size:51 final size:49
Alignment explanation
Indices: 104950413--104950607 Score: 228
Period size: 50 Copynumber: 3.9 Consensus size: 49
104950403 GTAGCTAAAG
* *
104950413 CAATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CAATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATC-AA
* * * * *
104950463 CCATTTGATACACGTAGTAGCCTGCACTTAGTACTATACACGTGATCGAA
1 CAATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATC-AA
** * * *
104950513 GTTATCAGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGATCAA
1 -CAATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAA
* * *
104950563 CAATCTGGTGCACGTAGTAGCTTGCACTTAGTACTACACACGTGA
1 CAATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA
104950608 CCTCAAATAG
Statistics
Matches: 119, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
49 37 0.31
50 44 0.37
51 38 0.32
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (49 bp):
CAATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAA
Found at i:104950607 original size:100 final size:101
Alignment explanation
Indices: 104950419--104950607 Score: 281
Period size: 100 Copynumber: 1.9 Consensus size: 101
104950409 AAAGCAATCT
* * * *
104950419 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGC
*
104950484 CTGCACTTAGTACTATACACGTGATCGAAGTTATCA
66 CTGCACTTAGTACTACACACGTGATCGAAGTTATCA
* * * *
104950520 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGATC-AACAATCTGGTGCACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGC
*
104950584 TTGCACTTAGTACTACACACGTGA
66 CTGCACTTAGTACTACACACGTGA
104950608 CCTCAAATAG
Statistics
Matches: 78, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
100 41 0.53
101 37 0.47
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (101 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGC
CTGCACTTAGTACTACACACGTGATCGAAGTTATCA
Found at i:104950980 original size:35 final size:35
Alignment explanation
Indices: 104950929--104950995 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
104950919 ATATTTCATA
*
104950929 ATAACAATCTTCATATCATATAAATAACATTAATG
1 ATAACAATCATCATATCATATAAATAACATTAATG
*
104950964 ATAATAATCATCATATCATATAAATAACATTA
1 ATAACAATCATCATATCATATAAATAACATTA
104950996 TATTACATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.51, C:0.13, G:0.01, T:0.34
Consensus pattern (35 bp):
ATAACAATCATCATATCATATAAATAACATTAATG
Found at i:104950998 original size:19 final size:19
Alignment explanation
Indices: 104950941--104950998 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
104950931 AACAATCTTC
104950941 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
* *
104950960 A-AT--GAT-AATAATCATC
1 ATATCATATAAATAA-CATT
104950976 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
104950995 ATAT
1 ATAT
104950999 TACATAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
15 5 0.17
16 6 0.20
17 2 0.07
18 2 0.07
19 10 0.33
20 5 0.17
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.36
Consensus pattern (19 bp):
ATATCATATAAATAACATT
Found at i:104953319 original size:15 final size:15
Alignment explanation
Indices: 104953290--104953328 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
104953280 AACAGAGAAG
104953290 CCAAGAATAAAGAAAT
1 CCAAG-ATAAAGAAAT
104953306 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
*
104953321 CCATGATA
1 CCAAGATA
104953329 CGAGAATCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.56, C:0.15, G:0.13, T:0.15
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:104956126 original size:49 final size:48
Alignment explanation
Indices: 104956040--104956274 Score: 209
Period size: 49 Copynumber: 4.7 Consensus size: 48
104956030 GTAGCTAAAG
* * *
104956040 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCT-GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * *
104956089 TTATCCTGTACACGTAGTAGCCTGTACTTAGTACTACACACGTGACCTAA
1 CTAT-CTGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
* * * * *
104956139 CCATTTGATAAACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTG-TACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * * * * *
104956189 GTTATCAGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAA
1 -CTATC-TGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * *
104956239 CAATCTGGTGCACGTAGTAGGCTGCACTTACTACTA
1 CTATCT-GTACACGTAGTAGCCTGCACTTAGTACTA
104956275 ACCACGTGAC
Statistics
Matches: 147, Mismatches: 32, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
49 66 0.45
50 46 0.31
51 34 0.23
52 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (48 bp):
CTATCTGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:104956228 original size:101 final size:98
Alignment explanation
Indices: 104956054--104956285 Score: 259
Period size: 100 Copynumber: 2.3 Consensus size: 98
104956044 CTGGTACGCA
* * ** * *
104956054 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCTGTACACGTAGTAGCCTGTACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
* * *
104956119 GTACTACACACGTGACCTAACCATTTGATAAACG
66 GTACTACACACGCGACC-AACAATCTGATAAACG
* * *
104956153 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCTTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* * **
104956218 TAGTACTACACATGCGACCAACAATCTGGTGCACG
64 TAGTACTACACACGCGACCAACAATCTGATAAACG
* *
104956253 TAGTAGGCTGCACTTACTACTA-ACCACGTGACC
1 TAGTAGCCTGCACTTAGTACTACA-CACGTGACC
104956286 TCACAATAGC
Statistics
Matches: 111, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
99 31 0.28
100 41 0.37
101 39 0.35
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACAATCTGATAAACG
Found at i:104956676 original size:19 final size:19
Alignment explanation
Indices: 104956619--104956676 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
104956609 AACAATCTTC
104956619 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
* *
104956638 A-AT--GAT-AATAATCATC
1 ATATCATATAAATAA-CATT
104956654 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
104956673 ATAT
1 ATAT
104956677 TACTTAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
15 5 0.17
16 6 0.20
17 2 0.07
18 2 0.07
19 10 0.33
20 5 0.17
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.36
Consensus pattern (19 bp):
ATATCATATAAATAACATT
Found at i:104958645 original size:34 final size:33
Alignment explanation
Indices: 104958595--104958665 Score: 99
Period size: 34 Copynumber: 2.1 Consensus size: 33
104958585 TATGTGCATT
104958595 ACTGATACTGCACTGATATGGGC-TAAGGCCCAC
1 ACTGATACTGCACTGATATGGGCTTAA-GCCCAC
* *
104958628 ACTGATATTGCCACTGATATGGGCTTAAGCCCAG
1 ACTGATACTG-CACTGATATGGGCTTAAGCCCAC
104958662 ACTG
1 ACTG
104958666 TTCAGATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
33 9 0.26
34 22 0.65
35 3 0.09
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (33 bp):
ACTGATACTGCACTGATATGGGCTTAAGCCCAC
Found at i:104961457 original size:68 final size:70
Alignment explanation
Indices: 104961385--104961582 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
104961375 ACACCCTGTA
* * * *
104961385 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
104961447 ATAAAT
65 ATAAAT
*
104961453 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
104961518 ATAAAT
65 ATAAAT
* * *
104961524 GTAGCTGGGTCGCATGCGTGATTCCAAGTGACGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGA-AGACACCATGTAGACAAGAGAGCTACG
104961583 AGACAAATCG
Statistics
Matches: 118, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
68 24 0.20
69 3 0.03
70 1 0.01
71 90 0.76
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:104961508 original size:71 final size:71
Alignment explanation
Indices: 104961419--104961582 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
104961409 GAGATGTATC
104961419 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
104961484 AGGACA
66 AGGACA
*
104961490 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
104961555 CGGACA
66 AGGACA
104961561 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
104961583 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:104968509 original size:68 final size:69
Alignment explanation
Indices: 104968423--104968616 Score: 247
Period size: 67 Copynumber: 2.8 Consensus size: 69
104968413 GAGACACCTA
* * * *
104968423 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAA-
104968485 ATAAAT
64 ATAAAT
*
104968491 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAA
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAA
104968556 TAAAT
65 TAAAT
* *
104968561 GTAGCT---TCGCATGCGTGATTCCAAGTGACGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGA-AGACACCATGTAGACAAGAGAGCTACG
104968617 AGACAAATCG
Statistics
Matches: 115, Mismatches: 6, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
67 48 0.42
68 24 0.21
69 3 0.03
70 13 0.11
71 27 0.23
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.21
Consensus pattern (69 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAAT
AAAT
Found at i:104968594 original size:67 final size:69
Alignment explanation
Indices: 104968457--104968616 Score: 279
Period size: 67 Copynumber: 2.3 Consensus size: 69
104968447 GAGATGTATC
104968457 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT--GTCGCATGCGTGATTCCAAGTGA
104968522 AGGACA
64 AGGACA
*
104968528 CCATGTAGACAAGAGAGCTACGTGAAA-ATAAATGTAGCT-TCGCATGCGTGATTCCAAGTGACG
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGTCGCATGCGTGATTCCAAGTGAAG
104968591 GACA
66 GACA
104968595 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
104968617 AGACAAATCG
Statistics
Matches: 88, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
67 49 0.56
70 12 0.14
71 27 0.31
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19
Consensus pattern (69 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGTCGCATGCGTGATTCCAAGTGAAG
GACA
Found at i:104973718 original size:40 final size:40
Alignment explanation
Indices: 104973673--104973839 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
104973663 CGGAATATAA
104973673 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
104973713 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
104973753 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
104973793 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
104973832 CCGGATAT
1 CCGGATAT
104973840 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:104973823 original size:80 final size:79
Alignment explanation
Indices: 104973689--104973839 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
104973679 ATAATCACGT
*
104973689 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
104973754 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
104973769 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
104973832 CCGGATAT
64 CCGGATAT
104973840 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:104975093 original size:56 final size:53
Alignment explanation
Indices: 104975030--104975138 Score: 132
Period size: 56 Copynumber: 2.0 Consensus size: 53
104975020 CCCCCTTTTC
104975030 CCTTAGTA-ATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTCTTTTCTTT
1 CCTTAGTACA-TTCGGCCAAGAAGATGGAG-AAGGATGAAC--ATTTTT-TTTTCTTT
***
104975086 CCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTTCTTT
1 CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTTCTTT
104975139 TTTTTTTCAT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
53 8 0.17
54 6 0.12
56 30 0.62
57 4 0.08
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (53 bp):
CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTTCTTT
Found at i:104981723 original size:40 final size:40
Alignment explanation
Indices: 104981678--104981844 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
104981668 CGGAATATAA
104981678 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
104981718 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
104981758 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
104981798 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
104981837 CCGGATAT
1 CCGGATAT
104981845 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:104981828 original size:80 final size:79
Alignment explanation
Indices: 104981694--104981844 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
104981684 ATAATCACGT
*
104981694 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
104981759 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
104981774 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
104981837 CCGGATAT
64 CCGGATAT
104981845 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:104989285 original size:40 final size:40
Alignment explanation
Indices: 104989223--104989299 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
104989213 AGTGAATTAA
* *
104989223 TAATTGGTCATTATGGACATATCCCGTCATTCGCCTGTGT
1 TAATTCGTCATTATGGAAATATCCCGTCATTCGCCTGTGT
*
104989263 TAATTCGTCATTGTGGAAATATCCCGTCATTCGCCTG
1 TAATTCGTCATTATGGAAATATCCCGTCATTCGCCTG
104989300 CAAAACATCG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.36
Consensus pattern (40 bp):
TAATTCGTCATTATGGAAATATCCCGTCATTCGCCTGTGT
Found at i:104990644 original size:132 final size:129
Alignment explanation
Indices: 104990473--104990832 Score: 357
Period size: 132 Copynumber: 2.7 Consensus size: 129
104990463 AGAGAGCATG
* * ** *
104990473 AGTGAAATTCTAAAGGAATC-TTCGATCATTTTGGACAAATAGGAAATCACAACCCAGCATGATA
1 AGTGAAATTCTAAAGGGA-CATTCGATTATTTT-GACAAATAGGAAATTGCAACCCAACA-GATA
* * * *
104990537 GGGCACGATTCCCTGAATTGCCAAACATCGAATATTACCTTAGTGTTGAA-GAGTTTTTAGAAAA
63 GGGCACGATTCCC-GAATTGCCAAACATCAAACATCACCTTAGTGTTAAAGGA-TTTTTAGAAAA
104990601 CATA
126 CATA
* * *
104990605 AGTGAAATTCAAAAGGGACATTCGATTATTTTGATCAAATAAGAAATTGCAACCCAACACATTAG
1 AGTGAAATTCTAAAGGGACATTCGATTATTTTGA-CAAATAGGAAATTGCAACCCAACAGA-TAG
* * * * * *
104990670 GGCACGATTCTGCGAATTGCCAAATATCAAACATCGCCTTCGTTTTAAAGGATTTTTAGAAGACA
64 GGCACGATTC-CCGAATTGCCAAACATCAAACATCACCTTAGTGTTAAAGGATTTTTAGAAAACA
*
104990735 TG
128 TA
* * * * * *
104990737 AGTGAAATTTTGAAGGGATATTCGCTTATTTTGAGCAAA-CGAGAAATTGCAACCCAACACGTTA
1 AGTGAAATTCTAAAGGGACATTCGATTATTTTGA-CAAATAG-GAAATTGCAACCCAACA-GATA
*
104990801 GGGCACGATTCCGCGAATTGCCAAATATCAAA
63 GGGCACGATTCC-CGAATTGCCAAACATCAAA
104990833 TCCCGCCTTC
Statistics
Matches: 190, Mismatches: 30, Indels: 16
0.81 0.13 0.07
Matches are distributed among these distances:
131 4 0.02
132 183 0.96
133 3 0.02
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.27
Consensus pattern (129 bp):
AGTGAAATTCTAAAGGGACATTCGATTATTTTGACAAATAGGAAATTGCAACCCAACAGATAGGG
CACGATTCCCGAATTGCCAAACATCAAACATCACCTTAGTGTTAAAGGATTTTTAGAAAACATA
Found at i:104990840 original size:132 final size:132
Alignment explanation
Indices: 104990535--104990859 Score: 402
Period size: 132 Copynumber: 2.5 Consensus size: 132
104990525 CCCAGCATGA
* * * *** * * * *
104990535 TAGGGCACGATTCC-CTGAATTGCCAAACATCGAATATTACCTTAGTGTTGAAGAGTTTTTAGAA
1 TAGGGCACGATTCCGC-GAATTGCCAAATATCAAACACCGCCTTCGTTTTAAAGAATTTTTAGAA
* *
104990599 AACATAAGTGAAATTCAAAAGGGACATTCGATTATTTTGATCAAATAAGAAATTGCAACCCAACA
65 AACATAAGTGAAATTCAAAAGGGACATTCGATTATTTTGAGCAAACAAGAAATTGCAACCCAACA
104990664 CAT
130 CAT
* * * *
104990667 TAGGGCACGATTCTGCGAATTGCCAAATATCAAACATCGCCTTCGTTTTAAAGGATTTTTAGAAG
1 TAGGGCACGATTCCGCGAATTGCCAAATATCAAACACCGCCTTCGTTTTAAAGAATTTTTAGAAA
* *** * * *
104990732 ACATGAGTGAAATTTTGAAGGGATATTCGCTTATTTTGAGCAAACGAGAAATTGCAACCCAACAC
66 ACATAAGTGAAATTCAAAAGGGACATTCGATTATTTTGAGCAAACAAGAAATTGCAACCCAACAC
*
104990797 GT
131 AT
104990799 TAGGGCACGATTCCGCGAATTGCCAAATATCAAATC-CCGCCTTCGTTTTAAAGAATTTTTA
1 TAGGGCACGATTCCGCGAATTGCCAAATATCAAA-CACCGCCTTCGTTTTAAAGAATTTTTA
104990860 AACAAATAAA
Statistics
Matches: 166, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
132 164 0.99
133 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (132 bp):
TAGGGCACGATTCCGCGAATTGCCAAATATCAAACACCGCCTTCGTTTTAAAGAATTTTTAGAAA
ACATAAGTGAAATTCAAAAGGGACATTCGATTATTTTGAGCAAACAAGAAATTGCAACCCAACAC
AT
Found at i:104998279 original size:40 final size:40
Alignment explanation
Indices: 104998152--104998281 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
104998142 ATGCTGGAAA
* *
104998152 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
104998192 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
104998232 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
104998272 TTATATCCGG
1 TTATATCCGG
104998282 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:105005401 original size:27 final size:28
Alignment explanation
Indices: 105005344--105005413 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
105005334 AAATTTGTAC
**
105005344 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
105005372 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
105005399 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
105005414 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:105005422 original size:27 final size:27
Alignment explanation
Indices: 105005344--105005425 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
105005334 AAATTTGTAC
* *
105005344 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
105005372 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
105005399 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
105005426 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:105013620 original size:39 final size:39
Alignment explanation
Indices: 105013461--105013622 Score: 145
Period size: 40 Copynumber: 4.2 Consensus size: 39
105013451 AAATTGAATG
* * * *
105013461 ATATCCGGGCTAAG-CCGAAGACAATTATG-GA--AATT
1 ATATCCGGGCTAAGACCGAAGGCATTTGTGCGAGTGATT
* * * **
105013496 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTGATT
* * *
105013536 ATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTTATT
1 ATATCCGGGCTAA-GACCGAAGGCATTTGTGCGAGTGATT
*
105013576 CTATCCGGGCTAAGACCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCGAAGGCATTTGTGCGA-GTGATT
105013615 ATATCCGG
1 ATATCCGG
105013623 TTATATTCCG
Statistics
Matches: 100, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
35 13 0.13
37 13 0.13
38 2 0.02
39 28 0.28
40 43 0.43
41 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCGAAGGCATTTGTGCGAGTGATT
Found at i:105021536 original size:40 final size:40
Alignment explanation
Indices: 105021492--105021620 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
105021482 TGCTGGAAAT
* * *
105021492 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
* * *
105021532 TATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* * *
105021572 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGAC
105021612 TATATCCGG
1 TATATCCGG
105021621 TTATATTCCG
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
39 4 0.05
40 69 0.92
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:105028091 original size:132 final size:130
Alignment explanation
Indices: 105027850--105028239 Score: 421
Period size: 132 Copynumber: 3.0 Consensus size: 130
105027840 ATTATTCGTT
* * * *
105027850 TAAAAATTCTTTAAAACGAAGGTGA-GATTTGATATTTGGTAATTCGCGGAATCGTGCCCTAACG
1 TAAAAATCCTTTAAAACGAAGGTGATG-TTCGATATTTGGCAATTCGCGGAATCGTGCCCTAATG
* * *
105027914 TGCTGGGTTGCAATTTCTCATTTGCTCAAAATAAGCGAATATCCCTTCAAACTTTCACTCATGTC
65 TGCTGGGTTGC-ATTTCTTATTTG-TCAAAATAATCGAAGATCCCTTCAAACTTTCACTCATGTC
105027979 TTC
128 TTC
* * *
105027982 TAAAAATCCTTTAAAATGAAGGCGATGTTCGATATTTGGCAATTCGCGAAATCGTGCCCTAATGT
1 TAAAAATCCTTTAAAACGAAGGTGATGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTAATGT
* * * ** * *
105028047 GTTGGGTTGCACTTTCTTGTTTGATCAAAATAATCGAAGGTCCCTTTTGAA-TTTCACTTATGTT
66 GCTGGGTTGCA-TTTCTTATTTG-TCAAAATAATCGAAGATCCC-TTCAAACTTTCACTCATGTC
105028111 TTC
128 TTC
* * * * *
105028114 TAAAAA-CTCTTCAAAACGAAGGTAATATTCGATGTTTGGCAATTCGGGGAATCGTGCCCT-ATC
1 TAAAAATC-CTTTAAAACGAAGGTGATGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTAAT-
* * *
105028177 GTGCTGGGTTGCGATTTCCTATTTGTCCAAAATGATCGAAGATTCCTTCAGAAC-TTCACTCAT
64 GTGCTGGGTTGC-ATTTCTTATTTGT-CAAAATAATCGAAGATCCCTTCA-AACTTTCACTCAT
105028240 ACTCTCTAAA
Statistics
Matches: 214, Mismatches: 35, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
131 7 0.03
132 201 0.94
133 6 0.03
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (130 bp):
TAAAAATCCTTTAAAACGAAGGTGATGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTAATGT
GCTGGGTTGCATTTCTTATTTGTCAAAATAATCGAAGATCCCTTCAAACTTTCACTCATGTCTTC
Found at i:105030148 original size:15 final size:15
Alignment explanation
Indices: 105030104--105030171 Score: 93
Period size: 15 Copynumber: 4.5 Consensus size: 15
105030094 TATGATATTG
*
105030104 TATCTTGGATTTCTG
1 TATCTTGGATTTCTT
105030119 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
105030134 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
* *
105030149 TGTCCTGGACTTT-TT
1 TATCTTGGA-TTTCTT
105030164 TATCTTGG
1 TATCTTGG
105030172 TTTTTATATC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
15 44 0.94
16 3 0.06
ACGTcount: A:0.12, C:0.15, G:0.18, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:105039838 original size:43 final size:42
Alignment explanation
Indices: 105039667--105039836 Score: 175
Period size: 43 Copynumber: 4.0 Consensus size: 42
105039657 ATAGGATTTC
* * *
105039667 CGATATGTGTTCTCGTGTAAGACCACGTCTAGAACGTTGGCAT
1 CGATATGTGAT-TCGTGTAAGACCACGTCTGGGACGTTGGCAT
* * *
105039710 CGATATGTGATTACGTGTAAGACCATGTTTGGGACATTGGCAT
1 CGATATGTGATT-CGTGTAAGACCACGTCTGGGACGTTGGCAT
* *
105039753 CG-TATTTGATTCGTGTAAGACC-CTGTCTGGGATAG-TGGCAT
1 CGATATGTGATTCGTGTAAGACCAC-GTCTGGGA-CGTTGGCAT
* * *
105039794 TGATATGTGATTGCATGTAAGACCACGTTTGGGACGTTGGCAT
1 CGATATGTGATT-CGTGTAAGACCACGTCTGGGACGTTGGCAT
105039837 TGTACGATAT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
41 25 0.24
42 18 0.17
43 60 0.58
44 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.32
Consensus pattern (42 bp):
CGATATGTGATTCGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:105043415 original size:11 final size:11
Alignment explanation
Indices: 105043399--105043424 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
105043389 ACATTAAGGC
105043399 TTGTAGAGAAT
1 TTGTAGAGAAT
105043410 TTGTAGAGAAT
1 TTGTAGAGAAT
105043421 TTGT
1 TTGT
105043425 GATTATGTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.27, T:0.42
Consensus pattern (11 bp):
TTGTAGAGAAT
Found at i:105045370 original size:40 final size:40
Alignment explanation
Indices: 105045317--105045591 Score: 430
Period size: 40 Copynumber: 6.9 Consensus size: 40
105045307 TTGAGAGTTA
105045317 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
105045357 TATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
105045397 TATATCCGGGCTAAATCTCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
105045437 TATATCCGGGCTAAGT-CCGAAGAGCATTCATGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
105045476 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
105045516 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
105045556 TATATCTGAGCTAA-ACCTCGAAG-GCATTCGTACTGG
1 TATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTGG
105045592 AATTATGAGG
Statistics
Matches: 218, Mismatches: 15, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
39 50 0.23
40 168 0.77
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:105045569 original size:119 final size:120
Alignment explanation
Indices: 105045316--105045561 Score: 431
Period size: 119 Copynumber: 2.1 Consensus size: 120
105045306 ATTGAGAGTT
* *
105045316 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCTGAAGA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGTTATATCCGGGCTAAGTCCCGAAGA
* *
105045381 GCATTCGTGCTGGTGTTATATCCGGGCTAAATCTCGAAGAGCATTCGTGCTGGTG
66 GCATTCGTGCTGGTGTTATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTG
*
105045436 TTATATCCGGGCTAAGT-CCGAAGAGCATTCATGCTGGTGTTATATCCGGGCTAAGTCCCGAAGA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGTTATATCCGGGCTAAGTCCCGAAGA
*
105045500 GCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
66 GCATTCGTGCTGGTGTTATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTG
105045555 ATATATC
1 ATATATC
105045562 TGAGCTAAAC
Statistics
Matches: 119, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
119 103 0.87
120 16 0.13
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (120 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGTTATATCCGGGCTAAGTCCCGAAGA
GCATTCGTGCTGGTGTTATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTG
Found at i:105045689 original size:57 final size:57
Alignment explanation
Indices: 105045597--105045785 Score: 220
Period size: 57 Copynumber: 3.3 Consensus size: 57
105045587 ACTGGAATTA
* * * * * * * *
105045597 TGAGGCACTGTGTGCGCAAGCTCTTCAACCAAGCACTATCTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
** *
105045654 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
* *
105045711 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCACTATGTGTGCGAAATCAGTCAG-
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT-AGT
* *
105045768 TG-GGCACTGTGTATGCGA
1 TGAGGCACTATGTGTGCGA
105045786 AGTGTGTTTC
Statistics
Matches: 113, Mismatches: 18, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
56 14 0.12
57 98 0.87
58 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
Found at i:105045693 original size:28 final size:27
Alignment explanation
Indices: 105045658--105045757 Score: 137
Period size: 28 Copynumber: 3.6 Consensus size: 27
105045648 AGTAGTTGAG
105045658 GCACTATGTGTGCGAGTTCTTCAATCGA
1 GCACTATGTGTGCGAGTTCTT-AATCGA
** *
105045686 GCACTATGTGTGCGAGATTGGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTAATCGA
105045714 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTC-TTAATCGA
105045743 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
105045758 AATCAGTCAG
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
28 38 0.60
29 25 0.40
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (27 bp):
GCACTATGTGTGCGAGTTCTTAATCGA
Found at i:105055918 original size:13 final size:13
Alignment explanation
Indices: 105055900--105055927 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
105055890 TAACATAATG
105055900 AAAACCTTATTAC
1 AAAACCTTATTAC
105055913 AAAACCTTATTAC
1 AAAACCTTATTAC
105055926 AA
1 AA
105055928 TCTGATCTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (13 bp):
AAAACCTTATTAC
Found at i:105056817 original size:28 final size:29
Alignment explanation
Indices: 105056776--105056888 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 29
105056766 CCTGTATCTA
** *
105056776 GCCCATTAAACCC-AATCATATTCATATG
1 GCCCATTAGGCCCAAATCACATTCATATG
*
105056804 GCCCATTAGGCCCAAATCACCTAT-ATATG
1 GCCCATTAGGCCCAAATCACAT-TCATATG
*
105056833 GCCCATTAGGCCCAAATCACATTTATATG
1 GCCCATTAGGCCCAAATCACATTCATATG
* * *
105056862 GTCCGTTAGGCCC-AGTCACATTCATAT
1 GCCCATTAGGCCCAAATCACATTCATAT
105056889 TAGGAGAACA
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 24 0.33
29 48 0.66
30 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.27
Consensus pattern (29 bp):
GCCCATTAGGCCCAAATCACATTCATATG
Found at i:105059391 original size:42 final size:42
Alignment explanation
Indices: 105059284--105059587 Score: 380
Period size: 42 Copynumber: 7.3 Consensus size: 42
105059274 AAAAGAACCA
* * * *
105059284 TTCATCGCATTTAGAGTCCCAAGTGTGGAGGCCCATTTAC-T
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
105059325 TTGATTGCATTTAGAAGCCCAGGTGTGGAGGTCCATTTACATT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTAC-TT
* *
105059368 TT-ATTGCATTTAGAGGCCTAGGTGTGGAGGTTCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
105059409 TTCATTACATTTAAAGGCCCAGGTGTGGAGGTCCATTCT-CTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATT-TACTT
* * * *
105059451 TTTATTGCATTTAGAGGCCCTGGTGTGGAAGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * *
105059493 TTCATTACATTTAGAGACCCAGGTGTGGAGGTCCATTTGCTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * *
105059535 TTCATTGAATTTAAAGGCCCAGGTGTGGAGATCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
*
105059577 TTCATTACATT
1 TTCATTGCATT
105059588 GTATATAAAG
Statistics
Matches: 224, Mismatches: 34, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
41 38 0.17
42 182 0.81
43 4 0.02
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
Found at i:105060824 original size:148 final size:149
Alignment explanation
Indices: 105060328--105060908 Score: 639
Period size: 148 Copynumber: 3.9 Consensus size: 149
105060318 TATATTTAAA
* * *
105060328 AAAGTTTAGATTTTAAAAAATAAAAA-ACTATTTTTTTAATCATTTT-AAGGAAAATTTTAAAAT
1 AAAGTTTAGATTTTAAAAAATAAAAATA-TA-TTTTTTATTAATTTTAAAGGAAAATTTTAAATT
* *
105060391 TTTAAAACAAAGTTTTGATTTTTTTTCAACTA-TTCCAAATAAAAGCTTTGATCTTTAAGAAAAA
64 TTTAAAACAAAGTTTTGA-TTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTTTAAGAAAAA
**
105060455 TAGTGGTTT-TTTTTAAAAAAATAAAAAAGAG
128 TAGT--TTTGTTTTT-------T-TTAAAGAG
* * * *
105060486 AAAGTTTAGATTTTAAAAAATAAAAATCTGTTTTTTAGTT-ATTTTAAAAG-AAAGTTTAAATTT
1 AAAGTTTAGATTTTAAAAAATAAAAATATATTTTTTA-TTAATTTTAAAGGAAAATTTTAAATTT
*
105060549 TTAAAACAAAGTTTTGATTTTTTT-AACTATCTCAAAATAAAAGCTTTAATCTTTAAGAAAAATA
65 TTAAAACAAAGTTTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTTTAAGAAAAATA
*
105060613 ---ATGTTTTTTTTAAAGAG
130 GTTTTGTTTTTTTTAAAGAG
* * * * *
105060630 AAAGTTTAGATTTTAAAAAATAAAAATCTGCTTTTTTTAGTCATTTTAAAGG-AAATTTTAAATC
1 AAAGTTTAGATTTTAAAAAATAAAAATAT--ATTTTTTATTAATTTTAAAGGAAAATTTTAAATT
*
105060694 TTTAAAACAAAATTTTGATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTTTAAGAAAAA
64 TTTAAAACAAAGTTTTGA-TTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTTTAAGAAAAA
105060759 TAGTTTTGTTTTTTTTAAAGAG
128 TAGTTTTGTTTTTTTTAAAGAG
* * * *
105060781 AAAGTTTAGATTTT-TAAAATAAAAATATATTTATTATTAATTTTAAAGGAAAAGTTTGAATTTT
1 AAAGTTTAGATTTTAAAAAATAAAAATATATTTTTTATTAATTTTAAAGGAAAA-TTTTAAATTT
* * ** * * *
105060845 TTAAAACAAATTTTTTAGCTTTTTCAACTATTTCGAAAT-AAAGTTTTAATTTTTAAGAAAAATA
65 TTAAAACAAAGTTTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTTTAAGAAAAATA
105060909 ATAATTTTTT
Statistics
Matches: 372, Mismatches: 36, Indels: 40
0.83 0.08 0.09
Matches are distributed among these distances:
144 35 0.09
145 2 0.01
146 43 0.12
147 7 0.02
148 79 0.21
149 22 0.06
150 34 0.09
151 31 0.08
152 5 0.01
155 5 0.01
156 38 0.10
157 40 0.11
158 31 0.08
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.43
Consensus pattern (149 bp):
AAAGTTTAGATTTTAAAAAATAAAAATATATTTTTTATTAATTTTAAAGGAAAATTTTAAATTTT
TAAAACAAAGTTTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTTTAAGAAAAATAG
TTTTGTTTTTTTTAAAGAG
Found at i:105063973 original size:46 final size:46
Alignment explanation
Indices: 105063923--105064098 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
105063913 TGGTTGAGCA
105063923 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
105063969 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
105064014 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
105064062 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
105064099 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:105064079 original size:93 final size:93
Alignment explanation
Indices: 105063920--105064091 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
105063910 GGATGGTTGA
* *
105063920 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
105063985 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
105064013 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
105064078 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
105064092 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:105072940 original size:27 final size:28
Alignment explanation
Indices: 105072883--105072952 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
105072873 AAATTTGTAC
**
105072883 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
105072911 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
105072938 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
105072953 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:105072961 original size:27 final size:27
Alignment explanation
Indices: 105072883--105072964 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
105072873 AAATTTGTAC
* *
105072883 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
105072911 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
105072938 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
105072965 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:105081006 original size:27 final size:28
Alignment explanation
Indices: 105080949--105081018 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
105080939 AAATTTGTAC
**
105080949 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
105080977 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
105081004 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
105081019 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:105081027 original size:27 final size:27
Alignment explanation
Indices: 105080949--105081030 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
105080939 AAATTTGTAC
* *
105080949 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
105080977 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
105081004 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
105081031 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:105085217 original size:40 final size:40
Alignment explanation
Indices: 105085090--105085219 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
105085080 ATGCTGGAAA
* *
105085090 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
105085130 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
105085170 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
105085210 TTATATCCGG
1 TTATATCCGG
105085220 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:105093853 original size:39 final size:40
Alignment explanation
Indices: 105093759--105093908 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
105093749 AATTGAATGA
* * * **
105093759 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* * *
105093799 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-CATAC
*
105093839 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
105093878 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
105093909 AAATCGTGAT
Statistics
Matches: 90, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
38 4 0.04
39 31 0.34
40 53 0.59
41 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:105093893 original size:40 final size:38
Alignment explanation
Indices: 105093802--105093908 Score: 135
Period size: 39 Copynumber: 2.7 Consensus size: 38
105093792 GAAATTATAA
* *
105093802 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGCTACAT
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGCTACAT
*
105093841 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-CATTCTAT
1 CCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGC-TAC-AT
105093881 CCGGGCTAAGACCCGAAGGCATTTGTGC
1 CCGGGCTAAGACCCGAAGGCA-TTGTGC
105093909 AAATCGTGAT
Statistics
Matches: 61, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
38 4 0.07
39 28 0.46
40 27 0.44
41 2 0.03
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.21
Consensus pattern (38 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCGAGTGCTACAT
Found at i:105093922 original size:40 final size:38
Alignment explanation
Indices: 105093754--105093940 Score: 137
Period size: 40 Copynumber: 4.8 Consensus size: 38
105093744 TGAGAAATTG
* * *
105093754 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * * *
105093794 AAT-TATAACCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
105093831 AGTGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGA
1 AATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A
* *
105093871 GTCAT-TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 --AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
105093910 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
105093941 CTTGGTGCGG
Statistics
Matches: 114, Mismatches: 24, Indels: 18
0.73 0.15 0.12
Matches are distributed among these distances:
37 6 0.05
38 2 0.02
39 32 0.28
40 73 0.64
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:105098711 original size:43 final size:43
Alignment explanation
Indices: 105098664--105098829 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 43
105098654 GTTACTGAGA
*
105098664 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * *
105098707 TGTGACTACATGTAAGACCATGTCTAGGACATTGACATCGTTAA
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAT
** *** * *
105098751 T-CAATTTTGTGTAAGACCCTGTCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
105098792 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
105098830 TGTACAAGCT
Statistics
Matches: 95, Mismatches: 25, Indels: 7
0.75 0.20 0.06
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 84 0.88
44 3 0.03
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:105106781 original size:19 final size:20
Alignment explanation
Indices: 105106744--105106781 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
105106734 ATAAGGTGGT
105106744 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
105106764 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
105106782 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:105113449 original size:46 final size:46
Alignment explanation
Indices: 105113399--105113571 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
105113389 TGGTTGAGCA
*
105113399 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
105113445 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
105113492 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
105113538 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
105113572 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:105113555 original size:93 final size:93
Alignment explanation
Indices: 105113396--105113566 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
105113386 GGATGGTTGA
* *
105113396 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
105113461 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
105113489 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
105113554 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
105113567 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:105116103 original size:64 final size:64
Alignment explanation
Indices: 105116022--105116203 Score: 190
Period size: 67 Copynumber: 2.8 Consensus size: 64
105116012 AGACATTATG
* * * * *
105116022 ATGTAGCTAGGTTGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAGGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
105116086 ATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
105116151 AA
63 AA
* * *
105116153 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGA
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGA
105116204 ACCAAAATTT
Statistics
Matches: 97, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 17 0.18
64 25 0.26
66 22 0.23
67 30 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:105128083 original size:34 final size:34
Alignment explanation
Indices: 105128040--105128105 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
105128030 AAGATTTTTG
105128040 GAAAACCTTCATATAAAAAGGCTCTTGTTGCAAC
1 GAAAACCTTCATATAAAAAGGCTCTTGTTGCAAC
*
105128074 GAAAACCTTCATATGAAAAGGCTCTTGTTGCA
1 GAAAACCTTCATATAAAAAGGCTCTTGTTGCA
105128106 GCTGAAGTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (34 bp):
GAAAACCTTCATATAAAAAGGCTCTTGTTGCAAC
Found at i:105134172 original size:27 final size:27
Alignment explanation
Indices: 105134139--105134430 Score: 299
Period size: 27 Copynumber: 10.9 Consensus size: 27
105134129 AAAATTATTG
* *
105134139 AATACCCTCGATTAGAAAAATTACCGA
1 AATACCCTCGATTAGTAAAATTACCAA
*
105134166 AATACCCTCGATTAGCAAAATTACCAA
1 AATACCCTCGATTAGTAAAATTACCAA
105134193 AATACCCTCGATTAGTAAAATTACCAA
1 AATACCCTCGATTAGTAAAATTACCAA
*
105134220 AATACCCTCGATTAGAAAAATTACCAA
1 AATACCCTCGATTAGTAAAATTACCAA
105134247 AATACCCTCGATTAGTAAAATTACCAA
1 AATACCCTCGATTAGTAAAATTACCAA
* * *
105134274 AATA-CCTTGGTTTGTAAAATTACCAA
1 AATACCCTCGATTAGTAAAATTACCAA
* * * **
105134300 AATACCC-CTAATTTGTGAAATTACTGA
1 AATACCCTC-GATTAGTAAAATTACCAA
* * **
105134327 AATACCTTCGACCTA-TAAAATTACTGA
1 AATACCCTCGA-TTAGTAAAATTACCAA
105134354 AATACCCTCGAATT-GTAAAATTACCAA
1 AATACCCTCG-ATTAGTAAAATTACCAA
* * * *
105134381 AGTACCCCCGATTTA-TAGAATTACCAT
1 AATACCCTCGA-TTAGTAAAATTACCAA
**
105134408 TTTACCCTCGATTTA-TAAAATTA
1 AATACCCTCGA-TTAGTAAAATTA
105134431 TTGAAATACC
Statistics
Matches: 226, Mismatches: 31, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
26 24 0.11
27 199 0.88
28 3 0.01
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (27 bp):
AATACCCTCGATTAGTAAAATTACCAA
Found at i:105134456 original size:27 final size:27
Alignment explanation
Indices: 105134433--105134566 Score: 173
Period size: 27 Copynumber: 5.0 Consensus size: 27
105134423 TAAAATTATT
*
105134433 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
105134460 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
105134487 GAAATACCCTTGTAGGGTAGGAA-TACC
1 GAAATACCCCTGTAGGGTA-GAATTACC
* *
105134514 AAAATACCCCTGTAGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
105134541 GAGATACCCTTGTGGGGT-GAAATTAC
1 GAAATACCCCTGTAGGGTAG-AATTAC
105134567 TATTTTGCCC
Statistics
Matches: 94, Mismatches: 10, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
26 2 0.02
27 89 0.95
28 3 0.03
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:105135132 original size:22 final size:22
Alignment explanation
Indices: 105135080--105135135 Score: 87
Period size: 22 Copynumber: 2.5 Consensus size: 22
105135070 GCCAATTATT
105135080 CTGATTATGGCTTTGTGCCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
105135102 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
105135124 CTGATTATGGCT
1 CTGATTATGGCT
105135136 GTGTACCGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 1 0.03
22 28 0.93
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:105135249 original size:25 final size:26
Alignment explanation
Indices: 105135221--105135302 Score: 76
Period size: 27 Copynumber: 3.1 Consensus size: 26
105135211 TGCCACGTAT
* *
105135221 TCTGTT-AAGTGGCTTTGCCACATTA
1 TCTGTTCAAGTGGCTCTGCCACAATA
*
105135246 TCTGATTCTAGTGGCTCTGCCACAATA
1 TCTG-TTCAAGTGGCTCTGCCACAATA
** * *
105135273 TCTGTATCTGGTGACTCTGTCACAATA
1 TCTGT-TCAAGTGGCTCTGCCACAATA
105135300 TCT
1 TCT
105135303 ATCCTGGCAG
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
25 4 0.08
26 3 0.06
27 41 0.85
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (26 bp):
TCTGTTCAAGTGGCTCTGCCACAATA
Found at i:105135290 original size:27 final size:27
Alignment explanation
Indices: 105135236--105135302 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
105135226 TAAGTGGCTT
* *
105135236 TGCCACATTATCTGATTCTAGTGGCTC
1 TGCCACAATATCTGATTCTAGTGACTC
*
105135263 TGCCACAATATCTG-TATCTGGTGACTC
1 TGCCACAATATCTGAT-TCTAGTGACTC
*
105135290 TGTCACAATATCT
1 TGCCACAATATCT
105135303 ATCCTGGCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.03
27 34 0.97
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGATTCTAGTGACTC
Found at i:105135475 original size:25 final size:25
Alignment explanation
Indices: 105135430--105135550 Score: 107
Period size: 25 Copynumber: 4.6 Consensus size: 25
105135420 CATTCACATT
* *
105135430 CTGATTTTGATTCTGTTACCTTATA
1 CTGATTCTGATTCTGTCACCTTATA
*
105135455 CTAATTCTGATTCTGTCACCTAATACTGA
1 CTGATTCTGATTCTGTCACCT--TA-T-A
* *
105135484 TTCTGATTCTGATTCTGTTACCTGATA
1 --CTGATTCTGATTCTGTCACCTTATA
* *
105135511 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTTATA
* *
105135536 CTGATTTTAATTCTG
1 CTGATTCTGATTCTG
105135551 ATTCTGATTC
Statistics
Matches: 79, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
25 53 0.67
27 3 0.04
28 2 0.03
29 2 0.03
31 19 0.24
ACGTcount: A:0.21, C:0.20, G:0.12, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTTATA
Found at i:105135491 original size:6 final size:6
Alignment explanation
Indices: 105135480--105135598 Score: 82
Period size: 6 Copynumber: 19.3 Consensus size: 6
105135470 TCACCTAATA
* *
105135480 CTGATT CTGATT CTGATT CTG-TT ACCTGATA CTGATT CTGATT CTG-TCAC
1 CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT CTGAT--T
* * * *
105135530 CTAATT CTGATT TTAATT CTGATT CTGATT CTG-TCAC CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT
* * *
105135579 CTAATT CTCATT TTGATT CT
1 CTGATT CTGATT CTGATT CT
105135599 AGTTTTGATA
Statistics
Matches: 87, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
5 4 0.05
6 72 0.83
7 8 0.09
8 3 0.03
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:105135497 original size:56 final size:56
Alignment explanation
Indices: 105135427--105135556 Score: 206
Period size: 56 Copynumber: 2.3 Consensus size: 56
105135417 TTGCATTCAC
* *
105135427 ATTCTGATTTTGATTCTGTTACCTTATACTAATTCTGATTCTGTCACCTAATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTAATTCTGATTCTGTCACCTAATACTG
* *
105135483 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTAATTCTGATTCTGTCACCTAATACTG
* *
105135539 ATTTTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
105135557 ATTCTGTCAC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (56 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTAATTCTGATTCTGTCACCTAATACTG
Found at i:105135523 original size:31 final size:31
Alignment explanation
Indices: 105135427--105135586 Score: 122
Period size: 31 Copynumber: 5.4 Consensus size: 31
105135417 TTGCATTCAC
*
105135427 ATTCTGATTTTGATTCTGTTACCT--TA-T-
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * *
105135454 A--CTAATTCTGATTCTGTCACCTAATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
105135483 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * ** *
105135514 ATTCTGATTCTG-TCACCTAATT--CTGATTTTA
1 ATTCTGATTCTGAT--TCT-GTTACCTGATACTG
* *
105135545 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
105135576 ATTCTAATTCT
1 ATTCTGATTCT
105135587 CATTTTGATT
Statistics
Matches: 104, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
25 18 0.17
27 3 0.03
28 1 0.01
29 2 0.02
30 3 0.03
31 72 0.69
32 3 0.03
33 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.12, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:105135552 original size:37 final size:37
Alignment explanation
Indices: 105135511--105135598 Score: 140
Period size: 37 Copynumber: 2.4 Consensus size: 37
105135501 TTACCTGATA
*
105135511 CTGATTCTGATTCTGTCACCTAATTCTGATTTTAATT
1 CTGATTCTGATTCTGTCACCTAATTCTGATTCTAATT
*
105135548 CTGATTCTGATTCTGTCACCTGATTCTGATTCTAATT
1 CTGATTCTGATTCTGTCACCTAATTCTGATTCTAATT
* *
105135585 CTCATTTTGATTCT
1 CTGATTCTGATTCT
105135599 AGTTTTGATA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.19, C:0.20, G:0.11, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTCTGTCACCTAATTCTGATTCTAATT
Found at i:105144498 original size:21 final size:21
Alignment explanation
Indices: 105144468--105144509 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
105144458 AGTAAGTTAA
* *
105144468 TAAATAATAATAAAATTAAAT
1 TAAATAATAAGAAAAATAAAT
*
105144489 TAAATTATAAGAAAAATAAAT
1 TAAATAATAAGAAAAATAAAT
105144510 GGCTAAAGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (21 bp):
TAAATAATAAGAAAAATAAAT
Found at i:105153281 original size:16 final size:16
Alignment explanation
Indices: 105153260--105153291 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
105153250 TGTGTGAAAG
105153260 TTTCGTATGAAAATTT
1 TTTCGTATGAAAATTT
105153276 TTTCGTATGAAAATTT
1 TTTCGTATGAAAATTT
105153292 ATCAGTTGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.50
Consensus pattern (16 bp):
TTTCGTATGAAAATTT
Found at i:105156841 original size:24 final size:25
Alignment explanation
Indices: 105156790--105156841 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
105156780 ATTTTTGATT
* *
105156790 TTGATAAATATTTTGAGTTATGCCA
1 TTGATAAATATTTTGAGCTATGCAA
* *
105156815 TTGATGAATA-TTTGAGCTATGTAA
1 TTGATAAATATTTTGAGCTATGCAA
105156839 TTG
1 TTG
105156842 TAGTTGATGG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (25 bp):
TTGATAAATATTTTGAGCTATGCAA
Found at i:105157492 original size:45 final size:43
Alignment explanation
Indices: 105157441--105157572 Score: 126
Period size: 45 Copynumber: 3.0 Consensus size: 43
105157431 TAGGATTTCG
*
105157441 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACATTGGCATCAAT
1 ATATGTG-TTTCGTGTAAGACCATGTCTGGGACATTGGCATC-AT
* * * *
105157486 ATATGTGGTTACGTGTAAGACCTTGTTTGGGACATCGGCAT--T
1 ATATGT-GTTTCGTGTAAGACCATGTCTGGGACATTGGCATCAT
* * * *
105157528 GTAT-TGATTCGTGTAAGACCATGCCTGGGACAGTGGCATCGAT
1 ATATGTGTTTCGTGTAAGACCATGTCTGGGACATTGGCATC-AT
105157571 AT
1 AT
105157573 TAGATAGCAT
Statistics
Matches: 69, Mismatches: 14, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
40 27 0.39
41 1 0.01
42 4 0.06
43 2 0.03
45 34 0.49
46 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (43 bp):
ATATGTGTTTCGTGTAAGACCATGTCTGGGACATTGGCATCAT
Found at i:105166380 original size:20 final size:20
Alignment explanation
Indices: 105166333--105166385 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
105166323 CTAATAAAAT
* *
105166333 AAAATAAAAACAAATTCGAA
1 AAAATAAAAATAAATTCAAA
** *
105166353 AATGTAAAAATAAATTTAAA
1 AAAATAAAAATAAATTCAAA
105166373 AAAAT-AAAATAAA
1 AAAATAAAAATAAA
105166386 ATGGTAAATA
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 8 0.31
20 18 0.69
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.21
Consensus pattern (20 bp):
AAAATAAAAATAAATTCAAA
Found at i:105168230 original size:27 final size:28
Alignment explanation
Indices: 105168174--105168243 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
105168164 AAATTTGTAC
*
105168174 AGCACTAAGGGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
105168202 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
105168229 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
105168244 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 25 0.61
28 16 0.39
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:105168254 original size:27 final size:27
Alignment explanation
Indices: 105168174--105168255 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
105168164 AAATTTGTAC
* * * *
105168174 AGCACTAAGGGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
* * *
105168202 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
105168229 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
105168256 GTTTTGAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 1 0.02
27 32 0.65
28 16 0.33
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:105170335 original size:23 final size:23
Alignment explanation
Indices: 105170305--105170348 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
105170295 CATTTTTTTC
105170305 TAAATATTATCACAAAATAATCT
1 TAAATATTATCACAAAATAATCT
*
105170328 TAAATATTATCACTAAATAAT
1 TAAATATTATCACAAAATAAT
105170349 TCTAATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.36
Consensus pattern (23 bp):
TAAATATTATCACAAAATAATCT
Found at i:105174346 original size:25 final size:25
Alignment explanation
Indices: 105174316--105174409 Score: 118
Period size: 25 Copynumber: 3.8 Consensus size: 25
105174306 GTTATGACCC
*
105174316 ACAGCTCGTGTGAGCATACCGATTT
1 ACAGCTCGTATGAGCATACCGATTT
* * *
105174341 ATAGCTCGTGA-GAGCATACTGATCT
1 ACAGCTCGT-ATGAGCATACCGATTT
* *
105174366 ACAGCTCGTATGAGCATACCAATTC
1 ACAGCTCGTATGAGCATACCGATTT
105174391 ACAGCTCGTATGAGCATAC
1 ACAGCTCGTATGAGCATAC
105174410 ATATACATGA
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
24 1 0.02
25 57 0.98
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
ACAGCTCGTATGAGCATACCGATTT
Found at i:105179726 original size:29 final size:29
Alignment explanation
Indices: 105179684--105179767 Score: 141
Period size: 29 Copynumber: 2.9 Consensus size: 29
105179674 GCCGTATTTT
**
105179684 TTTCCAGCTTGCACACTTAGTGCCAAATA
1 TTTCCAGCACGCACACTTAGTGCCAAATA
*
105179713 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCAAATA
105179742 TTTCCAGCACGCACACTTAGTGCCAA
1 TTTCCAGCACGCACACTTAGTGCCAA
105179768 TCTCGACACC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.27
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCAAATA
Found at i:105187765 original size:29 final size:29
Alignment explanation
Indices: 105187737--105187839 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
105187727 CCTCCGAGCT
** * * *
105187737 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
105187766 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
105187795 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
105187824 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
105187840 ATCTCGACAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:105189288 original size:22 final size:23
Alignment explanation
Indices: 105189260--105189303 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
105189250 ATATATTGCC
105189260 CATCAATATCCTATC-TGGCCGG
1 CATCAATATCCTATCTTGGCCGG
105189282 CATCAATATCCTATCTTGGCCG
1 CATCAATATCCTATCTTGGCCG
105189304 CCACCTGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.30
Consensus pattern (23 bp):
CATCAATATCCTATCTTGGCCGG
Found at i:105190860 original size:29 final size:29
Alignment explanation
Indices: 105190827--105190900 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
105190817 GTGACGAGAT
105190827 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
105190856 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
105190885 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
105190901 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:105190916 original size:29 final size:30
Alignment explanation
Indices: 105190884--105190961 Score: 86
Period size: 29 Copynumber: 2.6 Consensus size: 30
105190874 CTGGAAATAT
* *
105190884 ATGGCACTAAGTGTGCGAG-CTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCCTCAAAGCGC
* * * *
105190913 ATGGCACTATGTGTGCGGGCCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCCTCAAAGCGC
105190943 ATGGCACTAAAGTGTGCGA
1 ATGGCACT-AAGTGTGCGA
105190962 AATCGAGTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
29 17 0.44
30 14 0.36
31 8 0.21
ACGTcount: A:0.24, C:0.21, G:0.33, T:0.22
Consensus pattern (30 bp):
ATGGCACTAAGTGTGCGAGCCTCAAAGCGC
Found at i:105193914 original size:27 final size:27
Alignment explanation
Indices: 105193785--105194017 Score: 244
Period size: 27 Copynumber: 8.7 Consensus size: 27
105193775 CATTAATCGA
* * * *
105193785 TAAAATGACTATTTTACCTTTAT-ATTG
1 TAAAATGACTGTTTTGCCCTTATGA-GG
*
105193812 TAAAATGACAGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
105193839 TAAAATGACTATTTTTCCCTTATGTA-G
1 TAAAATGACTGTTTTGCCCTTATG-AGG
105193866 TAAAATGACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * * *
105193893 TAAAATGACTATTTGGCTCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
105193920 TAAAATGAATGTTTTG-CCTTGATGTGG
1 TAAAATGACTGTTTTGCCCTT-ATGAGG
* *
105193947 TAAAGTGATTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
105193974 TAAACTGACTGTTTTGCCCTTAT-ATGG
1 TAAAATGACTGTTTTGCCCTTATGA-GG
105194001 T-AAATGACTG-TTTGCCC
1 TAAAATGACTGTTTTGCCC
105194018 ATATCTGATG
Statistics
Matches: 176, Mismatches: 24, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.04
26 13 0.07
27 150 0.85
28 6 0.03
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGAGG
Found at i:105200976 original size:27 final size:27
Alignment explanation
Indices: 105200934--105201183 Score: 275
Period size: 27 Copynumber: 9.3 Consensus size: 27
105200924 AAACATACAT
* * *
105200934 CACATAGGGGTAAAACAATCATCTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
* *
105200961 CATAAAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
** * *
105200988 CTTATGAGGGCAAAATAATCATTTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
* * *
105201015 CTCATGAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
* * *
105201042 CATATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
* * *
105201069 CACATAAGGGAAAAACAGTCATTTCAC
1 CACATAAGGGCAAAACAATCATTTTAC
* * *
105201096 CACATAAAGGCAAAACAGTCATTCTAC
1 CACATAAGGGCAAAACAATCATTTTAC
*
105201123 CACATAAGGGCAAAACAATCATTTCAC
1 CACATAAGGGCAAAACAATCATTTTAC
* * *
105201150 CACATAAGGGCAAAATAGTCACTTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
105201177 CACATAA
1 CACATAA
105201184 AGGGTCTAGG
Statistics
Matches: 191, Mismatches: 32, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 191 1.00
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.23
Consensus pattern (27 bp):
CACATAAGGGCAAAACAATCATTTTAC
Found at i:105201091 original size:81 final size:81
Alignment explanation
Indices: 105200945--105201186 Score: 313
Period size: 81 Copynumber: 3.0 Consensus size: 81
105200935 ACATAGGGGT
* * * ** * *
105200945 AAAACAATCATCTTACCATAAAAGGGCAAAACAATCATTTTACCTTATGAGGGCAAAATAATCAT
1 AAAACAGTCATTTTACCATATAAGGGCAAAACAATCATTTTACCACATAAGGGCAAAATAGTCAT
* * *
105201010 TTTACCTCATGAGGGC
66 TTTACCACATAAAGGC
* * * *
105201026 AAAACAGTCATTTTACCATATAAGGGCAAAATAGTCATTTTACCACATAAGGGAAAAACAGTCAT
1 AAAACAGTCATTTTACCATATAAGGGCAAAACAATCATTTTACCACATAAGGGCAAAATAGTCAT
*
105201091 TTCACCACATAAAGGC
66 TTTACCACATAAAGGC
* * * *
105201107 AAAACAGTCATTCTACCACATAAGGGCAAAACAATCATTTCACCACATAAGGGCAAAATAGTCAC
1 AAAACAGTCATTTTACCATATAAGGGCAAAACAATCATTTTACCACATAAGGGCAAAATAGTCAT
105201172 TTTACCACATAAAGG
66 TTTACCACATAAAGG
105201187 GTCTAGGTAA
Statistics
Matches: 137, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 137 1.00
ACGTcount: A:0.43, C:0.21, G:0.13, T:0.23
Consensus pattern (81 bp):
AAAACAGTCATTTTACCATATAAGGGCAAAACAATCATTTTACCACATAAGGGCAAAATAGTCAT
TTTACCACATAAAGGC
Found at i:105204747 original size:12 final size:12
Alignment explanation
Indices: 105204730--105204756 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
105204720 TCGGTGAGTT
105204730 ACATGGCCTAGC
1 ACATGGCCTAGC
105204742 ACATGGCCTAGC
1 ACATGGCCTAGC
105204754 ACA
1 ACA
105204757 CGGTCTTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.33, G:0.22, T:0.15
Consensus pattern (12 bp):
ACATGGCCTAGC
Found at i:105205960 original size:92 final size:92
Alignment explanation
Indices: 105205803--105205982 Score: 333
Period size: 92 Copynumber: 2.0 Consensus size: 92
105205793 ACAATTTTAC
105205803 AAGTAATGATTCACAAAACATTAATACCTATTGAACATCAACATTTCAAGTCCTACTTTAACATT
1 AAGTAATGATTCACAAAACATTAATACCTATTGAACATCAACATTTCAAGTCCTACTTTAACATT
105205868 ACATGATCATACACTTCATTTGATGTA
66 ACATGATCATACACTTCATTTGATGTA
* * *
105205895 AAGTAATGATTCACAAAACATTAATACCTATTGAACTTCAACATTTCAAGTCCTCCTTTACCATT
1 AAGTAATGATTCACAAAACATTAATACCTATTGAACATCAACATTTCAAGTCCTACTTTAACATT
105205960 ACATGATCATACACTTCATTTGA
66 ACATGATCATACACTTCATTTGA
105205983 CAGTTTAGGG
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
92 85 1.00
ACGTcount: A:0.38, C:0.21, G:0.07, T:0.34
Consensus pattern (92 bp):
AAGTAATGATTCACAAAACATTAATACCTATTGAACATCAACATTTCAAGTCCTACTTTAACATT
ACATGATCATACACTTCATTTGATGTA
Found at i:105208120 original size:68 final size:68
Alignment explanation
Indices: 105208046--105208191 Score: 292
Period size: 68 Copynumber: 2.1 Consensus size: 68
105208036 CACTCATGCA
105208046 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
105208111 GTG
66 GTG
105208114 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
105208179 GTG
66 GTG
105208182 ACCTAGCTAC
1 ACCTAGCTAC
105208192 TATATAGTAT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 78 1.00
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.32
Consensus pattern (68 bp):
ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
GTG
Found at i:105208224 original size:68 final size:67
Alignment explanation
Indices: 105208046--105208217 Score: 249
Period size: 68 Copynumber: 2.5 Consensus size: 67
105208036 CACTCATGCA
* *
105208046 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATATATATCTCAC-TAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
105208111 GTG
65 GTG
* *
105208114 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATATATATCTCAC-TAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
105208179 GTG
65 GTG
105208182 ACCTAGCTACTATATAGTATCTCA-TAGC-CTTCTTGT
1 ACCTAGCTAC-ATATA-TATCTCACTAGCTC-TCTTGT
105208218 ACACATGATG
Statistics
Matches: 99, Mismatches: 2, Indels: 6
0.93 0.02 0.06
Matches are distributed among these distances:
67 1 0.01
68 88 0.89
69 4 0.04
70 6 0.06
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (67 bp):
ACCTAGCTACATATATATCTCACTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATG
TG
Found at i:105213340 original size:49 final size:49
Alignment explanation
Indices: 105213271--105213538 Score: 229
Period size: 49 Copynumber: 5.1 Consensus size: 49
105213261 GTACATAATA
105213271 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
105213320 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGATGTGAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-TGT-AT
* * * * ** *
105213371 GAATGTGAAAGTGTATATATATGTG-ATAA-GGCCTAATG-GCCGATGTGATGAATGTGAAAGTG
1 --A--T-ATA-TGT-GATA-A-G-GCCTAATGGCC-GATGTGATGA-AT-------GTGAAAGTG
105213433 TAT
47 TAT
* *
105213436 ATATATGTGATAAGGTCTAATGGCCGATGTGATGAAT-TGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
105213484 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
105213533 ATATAT
1 ATATAT
105213539 ATGTGGTAAA
Statistics
Matches: 176, Mismatches: 18, Indels: 50
0.72 0.07 0.20
Matches are distributed among these distances:
48 45 0.26
49 60 0.34
50 3 0.02
51 2 0.01
53 1 0.01
55 2 0.01
56 10 0.06
57 11 0.06
58 6 0.03
59 11 0.06
60 10 0.06
61 2 0.01
63 1 0.01
65 2 0.01
66 3 0.02
67 7 0.04
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:105213368 original size:18 final size:18
Alignment explanation
Indices: 105213345--105213381 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
105213335 CCTAATGGCC
105213345 GATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAA
105213363 GATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAA
105213381 G
1 G
105213382 TGTATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.35, T:0.27
Consensus pattern (18 bp):
GATGTGATGAATGTGAAA
Found at i:105213437 original size:116 final size:114
Alignment explanation
Indices: 105213271--105213481 Score: 395
Period size: 116 Copynumber: 1.8 Consensus size: 114
105213261 GTACATAATA
105213271 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
105213336 CTAATGGCCGATGTGATGAATGTGAAAGATGTGATGAATGTGAAAGTGTAT
66 CTAATGGCCGATGTGATGAAT-TGAAA-ATGTGATGAATGTGAAAGTGTAT
*
105213387 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
105213452 CTAATGGCCGATGTGATGAATTGAAAATGT
66 CTAATGGCCGATGTGATGAATTGAAAATGT
105213482 ATATATATGT
Statistics
Matches: 94, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
114 4 0.04
115 5 0.05
116 85 0.90
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (114 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
CTAATGGCCGATGTGATGAATTGAAAATGTGATGAATGTGAAAGTGTAT
Found at i:105213445 original size:67 final size:67
Alignment explanation
Indices: 105213296--105213430 Score: 270
Period size: 67 Copynumber: 2.0 Consensus size: 67
105213286 CCTAATGGCC
105213296 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
105213361 AA
66 AA
105213363 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
105213428 AA
66 AA
105213430 G
1 G
105213431 TGTATATATA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.34, C:0.06, G:0.30, T:0.30
Consensus pattern (67 bp):
GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AA
Found at i:105213496 original size:48 final size:49
Alignment explanation
Indices: 105213363--105213538 Score: 318
Period size: 49 Copynumber: 3.6 Consensus size: 49
105213353 GAATGTGAAA
105213363 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
*
105213412 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGTCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
*
105213461 GATGTGATGAAT-TGAAAATGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
*
105213509 GACGTGATGAATGTGAAAGTGTATATATAT
1 GATGTGATGAATGTGAAAGTGTATATATAT
105213539 ATGTGGTAAA
Statistics
Matches: 121, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
48 45 0.37
49 76 0.63
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.32
Consensus pattern (49 bp):
GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
Found at i:105213662 original size:37 final size:36
Alignment explanation
Indices: 105213607--105213693 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
105213597 AACTTGGAAA
105213607 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
*
105213645 TATGTCCGGGTACGACCCGATGACTATGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
105213682 TATGTCCGGGTA
1 TATGTCCGGGTA
105213694 AGACTTCGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.89
38 4 0.09
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.28
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:105219370 original size:68 final size:68
Alignment explanation
Indices: 105219276--105219427 Score: 286
Period size: 68 Copynumber: 2.2 Consensus size: 68
105219266 TGGAATTACT
*
105219276 CATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATC
1 CATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATC
105219341 ACA
66 ACA
*
105219344 CATGTGACCTAGCTACATTTATCTCTCATGTAGCTCTCTTGTCTACATGGGATACATCCCGTATC
1 CATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATC
105219409 ACA
66 ACA
105219412 CATGTGACCTAGCTAC
1 CATGTGACCTAGCTAC
105219428 TATATAGTAT
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 82 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.32
Consensus pattern (68 bp):
CATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATC
ACA
Found at i:105219460 original size:68 final size:66
Alignment explanation
Indices: 105219276--105219453 Score: 241
Period size: 68 Copynumber: 2.6 Consensus size: 66
105219266 TGGAATTACT
* * *
105219276 CATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATC
1 CATGTGACCTAGCTACATATATATCT--CGTAGCTCTCTTGTCTACATGGGATACATCCCGTATC
105219341 ACA
64 ACA
* *
105219344 CATGTGACCTAGCTACATTTATCTCTCATGTAGCTCTCTTGTCTACATGGGATACATCCCGTATC
1 CATGTGACCTAGCTACATATATATCTC--GTAGCTCTCTTGTCTACATGGGATACATCCCGTATC
105219409 ACA
64 ACA
105219412 CATGTGACCTAGCTACTATATAGTATCTCGTAGC-CTTCTTGT
1 CATGTGACCTAGCTAC-ATATA-TATCTCGTAGCTC-TCTTGT
105219454 ACACATGATG
Statistics
Matches: 102, Mismatches: 3, Indels: 10
0.89 0.03 0.09
Matches are distributed among these distances:
66 1 0.01
67 1 0.01
68 91 0.89
69 4 0.04
70 5 0.05
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (66 bp):
CATGTGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCAC
A
Found at i:105221224 original size:40 final size:39
Alignment explanation
Indices: 105221179--105221305 Score: 121
Period size: 40 Copynumber: 3.2 Consensus size: 39
105221169 CGGAACATAA
105221179 CCGGATACAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATACAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
105221219 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATACAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
** * * * *
105221259 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATACAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
105221299 CCGGATA
1 CCGGATA
105221306 AAATTTCCAG
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATACAACCATTGCACAAATGCCTTCGGGTCTTAGC
Done.