Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 336 of 433
Found at i:105221323 original size:40 final size:40
Alignment explanation
Indices: 105221195--105221345 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
105221185 ACAACCATGT
* * *
105221195 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTC-CA
** ** * *
105221235 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
105221275 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
105221315 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATA
105221346 TCATTCAATT
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 84 0.94
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
Found at i:105221329 original size:80 final size:80
Alignment explanation
Indices: 105221195--105221344 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
105221185 ACAACCATGT
* *
105221195 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
105221259 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
105221275 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
105221338 CCCGGAT
64 CCCGGAT
105221345 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:105232588 original size:37 final size:41
Alignment explanation
Indices: 105232546--105232628 Score: 104
Period size: 43 Copynumber: 2.1 Consensus size: 41
105232536 TATTTTTATG
105232546 TTATTTA-TTGTT-TTTT-A-TATATTTGCATGAAA-ATTGA
1 TTATTTAGTTGTTATTTTAAGTATATTTGCATGAAATATT-A
105232583 TTATTTATGTTGTTATTTTAAGTTATATTTGCATGAAATATTA
1 TTATTTA-GTTGTTATTTTAAG-TATATTTGCATGAAATATTA
105232626 TTA
1 TTA
105232629 CATATGTATT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
37 7 0.18
39 5 0.13
40 4 0.10
41 1 0.03
43 19 0.49
44 3 0.08
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (41 bp):
TTATTTAGTTGTTATTTTAAGTATATTTGCATGAAATATTA
Found at i:105237640 original size:28 final size:27
Alignment explanation
Indices: 105237608--105237664 Score: 87
Period size: 28 Copynumber: 2.1 Consensus size: 27
105237598 AAACAATATT
* *
105237608 AGGTGGGCCTTAGCCCAATAACATAATC
1 AGGTGGGCCTAAGCCCAAT-ACAGAATC
105237636 AGGTGGGCCTAAGCCCAATACAGAATC
1 AGGTGGGCCTAAGCCCAATACAGAATC
105237663 AG
1 AG
105237665 TATCAGATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 9 0.33
28 18 0.67
ACGTcount: A:0.33, C:0.25, G:0.25, T:0.18
Consensus pattern (27 bp):
AGGTGGGCCTAAGCCCAATACAGAATC
Found at i:105240354 original size:19 final size:20
Alignment explanation
Indices: 105240330--105240367 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
105240320 GGTACCACCA
105240330 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
105240349 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
105240368 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:105240755 original size:93 final size:92
Alignment explanation
Indices: 105240597--105240766 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 92
105240587 GCCCCTAAGT
*
105240597 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
105240662 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* * *
105240689 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCAA
105240754 CGAGTTCGGATGC
65 CGAGTTCGGATGC
105240767 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 27 0.37
93 46 0.63
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:105240756 original size:46 final size:46
Alignment explanation
Indices: 105240592--105240763 Score: 208
Period size: 45 Copynumber: 3.7 Consensus size: 46
105240582 AACCCGCCCC
* * *
105240592 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
105240637 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
105240685 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
105240730 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
105240764 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 33 0.31
46 29 0.27
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:105248058 original size:93 final size:93
Alignment explanation
Indices: 105247894--105248064 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
105247884 GCCCCTAAGT
* *
105247894 GAACTCGGACTCAACTCAAAGAGCTCGGGAGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACCCGGACTCAACTCAAAGAGCTCGGGAATTCGCATCCATAAATGAACTCGGACTCAACTCAA
105247959 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
105247987 GAACCCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCATAATTGAACTCGGACTCAACTCA
1 GAACCCGGACTCAACTCAAAGAGCTCGGGA-ATTCGCATCCATAAATGAACTCGGACTCAACTCA
105248051 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
105248065 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 3 0.04
93 68 0.96
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACCCGGACTCAACTCAAAGAGCTCGGGAATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:105248059 original size:46 final size:45
Alignment explanation
Indices: 105247893--105248061 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 45
105247883 CGCCCCTAAG
* * * *
105247893 TGAACTCGGACTCAACTCAAAGAGCTCGGGA-GTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCAT-AA
* * *
105247939 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCATAA
* *
105247986 CGAACCCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
105248031 TTGAACTCGGACTCAACTCAACGAGTTCGGA
1 -TGAACTCGGACTCAACTCAACGAGTTCGGA
105248062 TGCTCAACCA
Statistics
Matches: 101, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 5 0.05
46 53 0.52
47 29 0.29
48 1 0.01
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
Found at i:105250030 original size:21 final size:20
Alignment explanation
Indices: 105250000--105250040 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
105249990 AAATTCCCAG
105250000 CCAGTCCAACCAACACACCA
1 CCAGTCCAACCAACACACCA
105250020 CCAGTACCAACCAACACACCA
1 CCAGT-CCAACCAACACACCA
105250041 TGTGGGATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.41, C:0.49, G:0.05, T:0.05
Consensus pattern (20 bp):
CCAGTCCAACCAACACACCA
Found at i:105255584 original size:58 final size:57
Alignment explanation
Indices: 105255461--105255629 Score: 286
Period size: 58 Copynumber: 2.9 Consensus size: 57
105255451 GTGCCCACTG
*
105255461 ACCGATCTCGCACACATAGTGCTCGGTTGAA-GAACTTGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA-TTGCACACACAGTGCCTCAATT
105255518 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATT-GCACACACAGTGCCTCAATT
*
105255576 ACTGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA-TTGCACACACAGTGCCTC
105255630 TAATCATTCG
Statistics
Matches: 107, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
57 32 0.30
58 73 0.68
59 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (57 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTGCACACACAGTGCCTCAATT
Found at i:105255617 original size:29 final size:28
Alignment explanation
Indices: 105255468--105255626 Score: 110
Period size: 29 Copynumber: 5.5 Consensus size: 28
105255458 CTGACCGATC
*
105255468 TCGCACACATAGTGCTCGGTTGAA-GAACT
1 TCGCACACACAGTGCTCGGTT-AAGGAA-T
** **
105255497 T-GCACACACAGTGCCTCAATTACCG-AT
1 TCGCACACACAGTG-CTCGGTTAAGGAAT
*
105255524 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTT-AAGGAAT
** **
105255554 TCGCACACACAGTGCCTCAATTACTG-AT
1 TCGCACACACAGTG-CTCGGTTAAGGAAT
*
105255582 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTT-AAGGAAT
*
105255612 TTGCACACACAGTGC
1 TCGCACACACAGTGC
105255627 CTCTAATCAT
Statistics
Matches: 99, Mismatches: 21, Indels: 20
0.71 0.15 0.14
Matches are distributed among these distances:
27 1 0.01
28 26 0.26
29 63 0.64
30 9 0.09
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACACAGTGCTCGGTTAAGGAAT
Found at i:105255844 original size:43 final size:43
Alignment explanation
Indices: 105255783--105256130 Score: 576
Period size: 43 Copynumber: 8.2 Consensus size: 43
105255773 CCTTGCTCGA
** *
105255783 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
105255826 ATCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
105255869 ATCA--GGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
105255910 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
105255953 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
105255996 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
105256039 ATCACC-GCACGAAGCCTGCTAGGCACGAAGGCCCCAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
105256081 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCCAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
105256124 ATCACCG
1 ATCACCG
105256131 AGTTTCATGC
Statistics
Matches: 293, Mismatches: 9, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
41 38 0.13
42 41 0.14
43 214 0.73
ACGTcount: A:0.31, C:0.34, G:0.24, T:0.11
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:105256111 original size:171 final size:170
Alignment explanation
Indices: 105255795--105256127 Score: 585
Period size: 171 Copynumber: 2.0 Consensus size: 170
105255785 CACCGGCATT
*
105255795 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCATGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
* * *
105255860 CGAATACATATCAGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCATCGGCACGAAG
66 CGAATACACATCACGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAAG
*
105255925 CCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACG
131 CCTGCTAGGCACGAAGGCCCCAATACACATCATCGGCACG
* *
105255965 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
*
105256030 CGAATACACATCACCGCACGAAGCCTGCTAGGCACGAAGGCCCCAATACACATCACCGGCACGAA
66 CGAATACACATCA-CGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAA
105256095 GCCTGCTAGGCACGAAGGCCCCAATACACATCA
130 GCCTGCTAGGCACGAAGGCCCCAATACACATCA
105256128 CCGAGTTTCA
Statistics
Matches: 154, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
170 74 0.48
171 80 0.52
ACGTcount: A:0.32, C:0.33, G:0.24, T:0.11
Consensus pattern (170 bp):
AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
CGAATACACATCACGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAAG
CCTGCTAGGCACGAAGGCCCCAATACACATCATCGGCACG
Found at i:105257564 original size:35 final size:35
Alignment explanation
Indices: 105257525--105257597 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
105257515 ACACATTCTT
105257525 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
105257560 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
105257595 TAT
1 TAT
105257598 ATCACATACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:105261645 original size:29 final size:28
Alignment explanation
Indices: 105261556--105261714 Score: 110
Period size: 29 Copynumber: 5.5 Consensus size: 28
105261546 CTGACCGATC
105261556 TCGCACACATAGTGCTCGGTTGAA-GAACT
1 TCGCACACATAGTGCTCGGTT-AAGGAA-T
** **
105261585 T-GCACACATAGTGCCTCAATTACCG-AT
1 TCGCACACATAGTG-CTCGGTTAAGGAAT
105261612 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACATAGTGCTCGGTT-AAGGAAT
* * ** **
105261642 TCGCACACACAGTACCTCAATTACTG-AT
1 TCGCACACATAGT-GCTCGGTTAAGGAAT
105261670 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACATAGTGCTCGGTT-AAGGAAT
* *
105261700 TTGCACACACAGTGC
1 TCGCACACATAGTGC
105261715 CTCTAATCAT
Statistics
Matches: 99, Mismatches: 21, Indels: 20
0.71 0.15 0.14
Matches are distributed among these distances:
27 1 0.01
28 27 0.27
29 62 0.63
30 9 0.09
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGGTTAAGGAAT
Found at i:105261676 original size:58 final size:57
Alignment explanation
Indices: 105261549--105261717 Score: 268
Period size: 58 Copynumber: 2.9 Consensus size: 57
105261539 GTGCCCACTG
* *
105261549 ACCGATCTCGCACACATAGTGCTCGGTTGAA-GAACTTGCACACATAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA-TTGCACACACAGTGCCTCAATT
*
105261606 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTACCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATT-GCACACACAGTGCCTCAATT
*
105261664 ACTGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA-TTGCACACACAGTGCCTC
105261718 TAATCATTCG
Statistics
Matches: 104, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
57 32 0.31
58 70 0.67
59 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (57 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTGCACACACAGTGCCTCAATT
Found at i:105261932 original size:43 final size:43
Alignment explanation
Indices: 105261871--105262218 Score: 567
Period size: 43 Copynumber: 8.2 Consensus size: 43
105261861 CCTTGCTCGA
** *
105261871 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * *
105261914 ATCACCGGCATGAAGCCTGCTAGGCACGAAGGCCTGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
105261957 ATCACTGGCACGAAGCCTGCTAGGCACGAAGG-CCAAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
105261999 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
105262042 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
105262085 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
105262128 ATCACCGACACGAAGCCTGCTAGGCACGAAGGCCC-AATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
105262170 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCC-AATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
105262212 ATCACCG
1 ATCACCG
105262219 AGTTTCATGC
Statistics
Matches: 289, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
42 92 0.32
43 197 0.68
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.12
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:105262104 original size:128 final size:129
Alignment explanation
Indices: 105261883--105262216 Score: 559
Period size: 128 Copynumber: 2.6 Consensus size: 129
105261873 CACCGGCATT
* *
105261883 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCATGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
* * * *
105261948 TGAATACATATCACTGGCACGAAGCCTGCTAGGCACGAAGG-CCAAATACACATCATCGGCACG
66 CGAATACACATCACTGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGACACG
*
105262011 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
*
105262076 CGAATACACATCA-TCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACG
66 CGAATACACATCACT-GGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGACACG
105262140 AAGCCTGCTAGGCACGAAGGCCC-AATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
105262204 C-AATACACATCAC
66 CGAATACACATCAC
105262217 CGAGTTTCAT
Statistics
Matches: 194, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
127 12 0.06
128 140 0.72
129 42 0.22
ACGTcount: A:0.32, C:0.33, G:0.24, T:0.12
Consensus pattern (129 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
CGAATACACATCACTGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGACACG
Found at i:105262169 original size:171 final size:170
Alignment explanation
Indices: 105261883--105262215 Score: 576
Period size: 171 Copynumber: 2.0 Consensus size: 170
105261873 CACCGGCATT
*
105261883 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCATGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
* * * * *
105261948 TGAATACATATCACTGGCACGAAGCCTGCTAGGCACGAAGGCCAAATACACATCATCGGCACGAA
66 CGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCAAATACACATCACCGGCACGAA
105262013 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACG
131 GCCTGCTAGGCACGAAGGCCC-AATACACATCATCGGCACG
* *
105262054 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
*
105262119 CGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCAATACACATCACCGGCACGAA
66 CGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCAAATACACATCACCGGCACGAA
105262184 GCCTGCTAGGCACGAAGGCCCAATACACATCA
131 GCCTGCTAGGCACGAAGGCCCAATACACATCA
105262216 CCGAGTTTCA
Statistics
Matches: 153, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
170 11 0.07
171 142 0.93
ACGTcount: A:0.32, C:0.32, G:0.24, T:0.12
Consensus pattern (170 bp):
AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
CGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCAAATACACATCACCGGCACGAA
GCCTGCTAGGCACGAAGGCCCAATACACATCATCGGCACG
Found at i:105263655 original size:35 final size:35
Alignment explanation
Indices: 105263616--105263688 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
105263606 ACACATTCTT
105263616 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
105263651 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
105263686 TAT
1 TAT
105263689 ATCACATACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:105271245 original size:20 final size:20
Alignment explanation
Indices: 105271218--105271305 Score: 74
Period size: 20 Copynumber: 4.5 Consensus size: 20
105271208 TCTATAAACT
* * *
105271218 GTAATTCATTCTTATAACTA
1 GTAATTCATCCGTATAACCA
*
105271238 GTAGTTCATCCGTATAACCA
1 GTAATTCATCCGTATAACCA
*
105271258 GTAATTCATCAC-TAT-ATCA
1 GTAATTCATC-CGTATAACCA
* *
105271277 GTAATTTATCTGTATCAA-CA
1 GTAATTCATCCGTAT-AACCA
105271297 GTAATTCAT
1 GTAATTCAT
105271306 TCATTTCAAC
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
19 15 0.27
20 38 0.69
21 2 0.04
ACGTcount: A:0.34, C:0.18, G:0.09, T:0.39
Consensus pattern (20 bp):
GTAATTCATCCGTATAACCA
Found at i:105271280 original size:19 final size:20
Alignment explanation
Indices: 105271256--105271325 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
105271246 TCCGTATAAC
*
105271256 CAGTAATTCATCACTAT-AT
1 CAGTAATTCATCACTATCAA
* **
105271275 CAGTAATTTATCTGTATCAA
1 CAGTAATTCATCACTATCAA
*
105271295 CAGTAATTCATTCA-TTTCAA
1 CAGTAATTCA-TCACTATCAA
105271315 CAGTAATTCAT
1 CAGTAATTCAT
105271326 ATAATCAGTA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
19 15 0.36
20 25 0.60
21 2 0.05
ACGTcount: A:0.36, C:0.19, G:0.07, T:0.39
Consensus pattern (20 bp):
CAGTAATTCATCACTATCAA
Found at i:105271534 original size:22 final size:22
Alignment explanation
Indices: 105271479--105271583 Score: 77
Period size: 23 Copynumber: 4.6 Consensus size: 22
105271469 TGAGCTGATA
* * *
105271479 AACAGTAAGATCTATTAAGCTCA
1 AACAGTAAGCTCTATTGAGCT-G
*
105271502 AACGGTAAGCTCTATTGAGCTG
1 AACAGTAAGCTCTATTGAGCTG
*
105271524 AACAGTAAGCTC-ATACGAGCTG
1 AACAGTAAGCTCTAT-TGAGCTG
** * *
105271546 AATTGGTAAGCTCCAATGAGCTG
1 AA-CAGTAAGCTCTATTGAGCTG
105271569 AAAACAGTAAGCTCT
1 --AACAGTAAGCTCT
105271584 TACGAGCTGA
Statistics
Matches: 64, Mismatches: 13, Indels: 9
0.74 0.15 0.10
Matches are distributed among these distances:
21 2 0.03
22 19 0.30
23 32 0.50
24 9 0.14
25 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (22 bp):
AACAGTAAGCTCTATTGAGCTG
Found at i:105271554 original size:45 final size:46
Alignment explanation
Indices: 105271505--105271594 Score: 137
Period size: 47 Copynumber: 2.0 Consensus size: 46
105271495 AAGCTCAAAC
* *
105271505 GGTAAGCTCTATTGAGCTG-AACAGTAAGCTCATACGAGCTGAATT
1 GGTAAGCTCCAATGAGCTGAAACAGTAAGCTCATACGAGCTGAATT
*
105271550 GGTAAGCTCCAATGAGCTGAAAACAGTAAGCTCTTACGAGCTGAA
1 GGTAAGCTCCAATGAGCTG-AAACAGTAAGCTCATACGAGCTGAA
105271595 ATATCAGTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
45 17 0.43
47 23 0.57
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.23
Consensus pattern (46 bp):
GGTAAGCTCCAATGAGCTGAAACAGTAAGCTCATACGAGCTGAATT
Found at i:105271607 original size:26 final size:26
Alignment explanation
Indices: 105271526--105271618 Score: 108
Period size: 24 Copynumber: 3.8 Consensus size: 26
105271516 TTGAGCTGAA
105271526 CAGTAAGCTCATACGAGCTG-AAT-T
1 CAGTAAGCTCATACGAGCTGAAATAT
* *
105271550 -GGTAAGCTCCA-ATGAGCTGAAA-A-
1 CAGTAAGCT-CATACGAGCTGAAATAT
*
105271573 CAGTAAGCTCTTACGAGCTGAAATAT
1 CAGTAAGCTCATACGAGCTGAAATAT
105271599 CAGTAAGCTCATACGAGCTG
1 CAGTAAGCTCATACGAGCTG
105271619 TGGTGAGTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
23 15 0.27
24 21 0.38
25 1 0.02
26 19 0.34
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGTAAGCTCATACGAGCTGAAATAT
Found at i:105277900 original size:20 final size:20
Alignment explanation
Indices: 105277877--105277932 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 20
105277867 TTTTATTCGA
105277877 ATAAACTGTAATTCATTCAT
1 ATAAACTGTAATTCATTCAT
* * *
105277897 AT-AACTAGTAGTTTATTCGT
1 ATAAACT-GTAATTCATTCAT
* *
105277917 ATAACCAGTAATTCAT
1 ATAAACTGTAATTCAT
105277933 CAGTATATCA
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
19 4 0.15
20 21 0.78
21 2 0.07
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (20 bp):
ATAAACTGTAATTCATTCAT
Found at i:105277928 original size:40 final size:38
Alignment explanation
Indices: 105277868--105277988 Score: 118
Period size: 40 Copynumber: 3.1 Consensus size: 38
105277858 GCAATTCATT
* * *
105277868 TTTATTCGAATAAACTGTAATTCATTCATATAACTAGTAG
1 TTTATTCGTAT-AACAGTAATTCATTCATATAAC-AGTAA
*
105277908 TTTATTCGTATAACCAGTAATTCA-TCAGTATATCAGTAA
1 TTTATTCGTATAA-CAGTAATTCATTCA-TATAACAGTAA
* * *
105277947 TTTATCCGTATCAACAGTGATTCATTCATTTCAACAGTAA
1 TTTATTCGTAT-AACAGTAATTCATTCATAT-AACAGTAA
105277987 TT
1 TT
105277989 CATATAATCG
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
39 30 0.44
40 38 0.56
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.40
Consensus pattern (38 bp):
TTTATTCGTATAACAGTAATTCATTCATATAACAGTAA
Found at i:105277938 original size:20 final size:20
Alignment explanation
Indices: 105277884--105277971 Score: 58
Period size: 20 Copynumber: 4.5 Consensus size: 20
105277874 CGAATAAACT
*
105277884 GTAATTCATTCA-TATAACTA
1 GTAATTCA-TCAGTATAACCA
* *
105277904 GTAGTTTATTC-GTATAACCA
1 GTAATTCA-TCAGTATAACCA
*
105277924 GTAATTCATCAGTAT-ATCA
1 GTAATTCATCAGTATAACCA
* *
105277943 GTAATTTATCCGTATCAA-CA
1 GTAATTCATCAGTAT-AACCA
*
105277963 GTGATTCAT
1 GTAATTCAT
105277972 TCATTTCAAC
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
19 18 0.33
20 35 0.65
21 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (20 bp):
GTAATTCATCAGTATAACCA
Found at i:105277946 original size:19 final size:20
Alignment explanation
Indices: 105277922--105277991 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
105277912 TTCGTATAAC
*
105277922 CAGTAATTCATCAGTAT-AT
1 CAGTAATTCATCAGTATCAA
* *
105277941 CAGTAATTTATCCGTATCAA
1 CAGTAATTCATCAGTATCAA
* *
105277961 CAGTGATTCATTCA-TTTCAA
1 CAGTAATTCA-TCAGTATCAA
105277981 CAGTAATTCAT
1 CAGTAATTCAT
105277992 ATAATCGGTA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 16 0.39
20 23 0.56
21 2 0.05
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.37
Consensus pattern (20 bp):
CAGTAATTCATCAGTATCAA
Found at i:105277957 original size:39 final size:39
Alignment explanation
Indices: 105277884--105277988 Score: 99
Period size: 39 Copynumber: 2.6 Consensus size: 39
105277874 CGAATAAACT
* *
105277884 GTAATTCATTCATATAACTAGTAGTTTATTCGTAT-AACCA
1 GTAATTCA-TCATATAACTAGTAATTTATCCGTATCAA-CA
*
105277924 GTAATTCATCAGTATATC-AGTAATTTATCCGTATCAACA
1 GTAATTCATCA-TATAACTAGTAATTTATCCGTATCAACA
* *
105277963 GTGATTCATTCATTTCAAC-AGTAATT
1 GTAATTCA-TCATAT-AACTAGTAATT
105277989 CATATAATCG
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
39 28 0.51
40 27 0.49
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.39
Consensus pattern (39 bp):
GTAATTCATCATATAACTAGTAATTTATCCGTATCAACA
Found at i:105278200 original size:22 final size:22
Alignment explanation
Indices: 105278143--105278224 Score: 85
Period size: 23 Copynumber: 3.6 Consensus size: 22
105278133 CCTGAGCTGA
*
105278143 TAAACAGTAAGCTCTATTGAGC
1 TAAACAGTAAGCTCTATCGAGC
**
105278165 TCAAATTGTAAGCTCTATCGAGC
1 T-AAACAGTAAGCTCTATCGAGC
*
105278188 TGAACAGTAAGCTC-ATACGAGC
1 TAAACAGTAAGCTCTAT-CGAGC
*
105278210 TAAATCGGTAAGCTC
1 TAAA-CAGTAAGCTC
105278225 CAATGAGCTG
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
21 2 0.04
22 19 0.39
23 28 0.57
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (22 bp):
TAAACAGTAAGCTCTATCGAGC
Found at i:105278233 original size:45 final size:48
Alignment explanation
Indices: 105278144--105278274 Score: 123
Period size: 45 Copynumber: 2.8 Consensus size: 48
105278134 CTGAGCTGAT
* * *
105278144 AAACAGTAAGCTC-TATTGAGCTCAAAT-TGTAAGCT-CTATCGAGCTG
1 AAACAGTAAGCTCATA-CGAGCTCAAATCGGTAAGCTCCAATCGAGCTG
105278190 -AACAGTAAGCTCATACGAGCT-AAATCGGTAAGCTCCAAT-GAGCTG
1 AAACAGTAAGCTCATACGAGCTCAAATCGGTAAGCTCCAATCGAGCTG
* *
105278235 AAAATAGTAAGCT-ATTACGAGCTGATATATCGGTAAGCTC
1 -AAACAGTAAGCTCA-TACGAGCTCA-A-ATCGGTAAGCTC
105278275 ATACGAGTTG
Statistics
Matches: 72, Mismatches: 4, Indels: 14
0.80 0.04 0.16
Matches are distributed among these distances:
44 4 0.06
45 30 0.42
46 6 0.08
47 18 0.25
48 1 0.01
49 1 0.01
50 12 0.17
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (48 bp):
AAACAGTAAGCTCATACGAGCTCAAATCGGTAAGCTCCAATCGAGCTG
Found at i:105288337 original size:25 final size:25
Alignment explanation
Indices: 105288279--105288536 Score: 111
Period size: 25 Copynumber: 10.3 Consensus size: 25
105288269 CAACTTAAGG
* *
105288279 TAAATAATATGA-AAAACAGTTTCAAA
1 TAAATAATAT-ATAAAA-AATTTAAAA
* *
105288305 TAATTAATATATAAAAAACTTAAAA
1 TAAATAATATATAAAAAATTTAAAA
*** *
105288330 TAAATAATA-ATAAAATAGCATGAAA
1 TAAATAATATATAAAA-AATTTAAAA
* * * *
105288355 TAAACAA-ATATAAGAATTTTAAGA
1 TAAATAATATATAAAAAATTTAAAA
* * *
105288379 TGAATAATATACAAAATAATTTAAAT
1 TAAATAATATATAAAA-AATTTAAAA
* * *
105288405 TAAATATTACACGT-GAAAATTTAAAA
1 TAAATAATATA--TAAAAAATTTAAAA
* * *
105288431 TAGATAATATGA-AAAATAGTTAAAA
1 TAAATAATAT-ATAAAAAATTTAAAA
* *
105288456 TAAATAATTTATAAAAAATATCTAAGA
1 TAAATAATATATAAAAAAT-T-TAAAA
* * *
105288483 TAAATGAT-T-TATAAAAGTT--AA
1 TAAATAATATATAAAAAATTTAAAA
* *
105288504 TAAACAATATATGAAAATATTTAAAA
1 TAAATAATATAT-AAAAAATTTAAAA
105288530 TAAATAA
1 TAAATAA
105288537 AATAAGTAAG
Statistics
Matches: 166, Mismatches: 49, Indels: 34
0.67 0.20 0.14
Matches are distributed among these distances:
21 7 0.04
22 1 0.01
23 2 0.01
24 24 0.14
25 66 0.40
26 52 0.31
27 14 0.08
ACGTcount: A:0.59, C:0.04, G:0.06, T:0.31
Consensus pattern (25 bp):
TAAATAATATATAAAAAATTTAAAA
Found at i:105288473 original size:27 final size:26
Alignment explanation
Indices: 105288420--105288498 Score: 83
Period size: 27 Copynumber: 3.1 Consensus size: 26
105288410 ATTACACGTG
* *
105288420 AAAAT-TTAAAATAGATAA--TATGA
1 AAAATATTAAAATAAATAATTTATAA
105288443 AAAATAGTTAAAATAAATAATTTATAA
1 AAAATA-TTAAAATAAATAATTTATAA
* *
105288470 AAAATATCTAAGATAAATGATTTATAA
1 AAAATAT-TAAAATAAATAATTTATAA
105288497 AA
1 AA
105288499 GTTAATAAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
23 5 0.11
25 12 0.26
26 1 0.02
27 29 0.62
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (26 bp):
AAAATATTAAAATAAATAATTTATAA
Found at i:105289449 original size:23 final size:22
Alignment explanation
Indices: 105289423--105289470 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
105289413 ATAGATTTGT
*
105289423 AGAAAATGAAACAAAAAGAAACA
1 AGAAAATGAAA-AAAAAGAAAAA
*
105289446 AGAAAATGAAAAGAAAGAAAAA
1 AGAAAATGAAAAAAAAGAAAAA
105289468 AGA
1 AGA
105289471 TTAAAGCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.75, C:0.04, G:0.17, T:0.04
Consensus pattern (22 bp):
AGAAAATGAAAAAAAAGAAAAA
Found at i:105292388 original size:15 final size:18
Alignment explanation
Indices: 105292368--105292405 Score: 55
Period size: 15 Copynumber: 2.3 Consensus size: 18
105292358 TCAAAATAAC
105292368 ATATTTTA-ATAA-A-TT
1 ATATTTTATATAATATTT
105292383 ATATTTTATATAATATTT
1 ATATTTTATATAATATTT
105292401 ATATT
1 ATATT
105292406 AAGTATGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 8 0.40
16 4 0.20
17 1 0.05
18 7 0.35
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
ATATTTTATATAATATTT
Found at i:105292423 original size:23 final size:24
Alignment explanation
Indices: 105292397--105292449 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
105292387 TTTATATAAT
* *
105292397 ATTTATATT-AAGTATGTAATTAA
1 ATTTATATTCAAATATATAATTAA
*
105292420 ATTTAT-TTCAAATATATATTTAA
1 ATTTATATTCAAATATATAATTAA
105292443 ATTTATA
1 ATTTATA
105292450 AATATTATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 2 0.08
23 23 0.92
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (24 bp):
ATTTATATTCAAATATATAATTAA
Found at i:105295249 original size:47 final size:48
Alignment explanation
Indices: 105295178--105295402 Score: 189
Period size: 47 Copynumber: 4.8 Consensus size: 48
105295168 AGGGTATAAT
105295178 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTGTC-CA-TCAA
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTT-TCACATTCAA
* * *
105295225 ATCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCACATTTTCAT
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCACA--TTCAA
* * * *
105295275 GCCGATGCCATGTCCTAGACATGGTCTTACACT-G---ACACATCTCGTA
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCACAT-TC-AA
* * * * **
105295321 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTC-GTTTCAA
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCACATTCAA
* * *
105295366 TGCTGATGCCATGTCCTAGACATGGTCTTACACTGGC
1 -ACCGATGCCATGTCCCAGACATGGTCTTACACTGGC
105295403 ACACAAATAA
Statistics
Matches: 146, Mismatches: 19, Indels: 25
0.77 0.10 0.13
Matches are distributed among these distances:
44 11 0.08
45 16 0.11
46 21 0.14
47 51 0.35
48 13 0.09
49 1 0.01
50 33 0.23
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (48 bp):
ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCACATTCAA
Found at i:105295387 original size:92 final size:95
Alignment explanation
Indices: 105295227--105295405 Score: 267
Period size: 92 Copynumber: 1.9 Consensus size: 95
105295217 TCCATCAAAT
* *
105295227 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCACATTTTCATGCCGATGCCATGTCCTA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGC-TTCACAGTTTCATGCCGATGCCATGTCCTA
105295292 GACATGGTCTTACACTGACACATCTCGTAGC
65 GACATGGTCTTACACTGACACATCTCGTAGC
* *
105295323 CGATG-CATGTCCCAAACAT-GTCTTACACTAGC-TCTC-GTTTCAATGCTGATGCCATGTCCTA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTTCACAGTTTC-ATGCCGATGCCATGTCCTA
*
105295384 GACATGGTCTTACACTGGCACA
65 GACATGGTCTTACACTGACACA
105295406 CAAATAACCC
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
91 4 0.05
92 42 0.55
94 13 0.17
95 13 0.17
96 5 0.06
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (95 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTTCACAGTTTCATGCCGATGCCATGTCCTAG
ACATGGTCTTACACTGACACATCTCGTAGC
Found at i:105297721 original size:46 final size:45
Alignment explanation
Indices: 105297561--105297728 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 45
105297551 CCCGCCCCTA
* *
105297561 AGTGAACTC-GACTCAACTCAACGAGCTC-G-CGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
*
105297603 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCAT
*
105297651 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
105297696 AGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 A-GTGAACTCGGACTCAACTCAACGAGTTCGGA
105297729 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 7, Indels: 23
0.78 0.05 0.17
Matches are distributed among these distances:
42 2 0.02
43 13 0.12
44 21 0.20
45 2 0.02
46 29 0.28
47 29 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
Found at i:105297727 original size:93 final size:90
Alignment explanation
Indices: 105297564--105297731 Score: 282
Period size: 93 Copynumber: 1.8 Consensus size: 90
105297554 GCCCCTAAGT
*
105297564 GAACTCGACTCAACTCAACGAGCTCGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
1 GAACTCGACTCAACTCAACGAGCTCGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
105297629 GTTCGGATGCCTAGTTACATCTCAC
66 GTTCGGATGCCTAGTTACATCTCAC
* *
105297654 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTC-GACTCAACTCAACGAGCTC-G-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105297719 CGAGTTCGGATGC
63 CGAGTTCGGATGC
105297732 TCAACCATCC
Statistics
Matches: 72, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
90 6 0.08
91 18 0.25
92 1 0.01
93 47 0.65
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (90 bp):
GAACTCGACTCAACTCAACGAGCTCGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
GTTCGGATGCCTAGTTACATCTCAC
Found at i:105298183 original size:30 final size:30
Alignment explanation
Indices: 105298149--105298208 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
105298139 ATTTAATACG
105298149 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
105298179 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
105298209 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:105302478 original size:6 final size:6
Alignment explanation
Indices: 105302467--105302495 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
105302457 ACAATAAAAG
105302467 AAATTA AAATTA AAATTA AAATTA AAATT
1 AAATTA AAATTA AAATTA AAATTA AAATT
105302496 TAAGTAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
AAATTA
Found at i:105305138 original size:28 final size:29
Alignment explanation
Indices: 105305077--105305149 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 29
105305067 GTGACGAGAT
105305077 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
105305106 TGGCACTAAGTGTGTGTGCT-GAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
105305134 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
105305150 ATTTACTATG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 22 0.54
29 19 0.46
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.30
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:105305145 original size:24 final size:23
Alignment explanation
Indices: 105305118--105305247 Score: 154
Period size: 24 Copynumber: 5.4 Consensus size: 23
105305108 GCACTAAGTG
*
105305118 TGTGTGCTGAAATATATGGCACTA
1 TGTGTGC-GAATTATATGGCACTA
*
105305142 TGTGTGCGATTTACTATGGCACTA
1 TGTGTGCGAATTA-TATGGCACTA
*
105305166 TGTGTGCGATTTACTATGGCACTA
1 TGTGTGCGAATTA-TATGGCACTA
*
105305190 TGTGTGCGATTTACTATGGCACTA
1 TGTGTGCGAATTA-TATGGCACTA
*
105305214 TGTGTGCG-ATTCGCTATGGCACTA
1 TGTGTGCGAATT--ATATGGCACTA
105305238 TGTGTGCGAA
1 TGTGTGCGAA
105305248 CATAATAAGC
Statistics
Matches: 98, Mismatches: 4, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 6 0.06
24 91 0.93
25 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (23 bp):
TGTGTGCGAATTATATGGCACTA
Found at i:105305260 original size:72 final size:72
Alignment explanation
Indices: 105305132--105305268 Score: 204
Period size: 72 Copynumber: 1.9 Consensus size: 72
105305122 TGCTGAAATA
* ** * *
105305132 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGC
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGC
105305197 GATTTAC
66 GATTTAC
*
105305204 TATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTGCGAACATAATA-AGCACTATGTGTG
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG-ACATAATATAGCACTATGTGTG
105305268 C
65 C
105305269 CACATTCGGT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
72 53 0.91
73 5 0.09
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (72 bp):
TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGC
GATTTAC
Found at i:105305268 original size:48 final size:48
Alignment explanation
Indices: 105305132--105305246 Score: 212
Period size: 48 Copynumber: 2.4 Consensus size: 48
105305122 TGCTGAAATA
*
105305132 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCAC
*
105305180 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCAC
105305228 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
105305247 ACATAATAAG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36
Consensus pattern (48 bp):
TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCAC
Found at i:105312918 original size:24 final size:23
Alignment explanation
Indices: 105312889--105313027 Score: 192
Period size: 24 Copynumber: 5.8 Consensus size: 23
105312879 GCTGGAAATA
105312889 TATGGCACTATGTGCGTGCGGA-TA-
1 TATGGCACTATGT--GTGC-GATTAC
105312913 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGA-TTAC
105312937 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGA-TTAC
105312961 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGA-TTAC
*
105312985 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATT-AC
105313009 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
105313028 ACATAATAAG
Statistics
Matches: 110, Mismatches: 1, Indels: 8
0.92 0.01 0.07
Matches are distributed among these distances:
21 2 0.02
22 4 0.04
23 4 0.04
24 100 0.91
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.35
Consensus pattern (23 bp):
TATGGCACTATGTGTGCGATTAC
Found at i:105313041 original size:72 final size:72
Alignment explanation
Indices: 105312913--105313049 Score: 204
Period size: 72 Copynumber: 1.9 Consensus size: 72
105312903 CGTGCGGATA
* ** * *
105312913 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGC
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGC
105312978 GATTTAC
66 GATTTAC
*
105312985 TATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTGCGAACATAATA-AGCACTATGTGTG
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG-ACATAATATAGCACTATGTGTG
105313049 C
65 C
105313050 CACATTCGGT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
72 53 0.91
73 5 0.09
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (72 bp):
TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGC
GATTTAC
Found at i:105313049 original size:48 final size:48
Alignment explanation
Indices: 105312889--105313027 Score: 212
Period size: 48 Copynumber: 2.9 Consensus size: 48
105312879 GCTGGAAATA
105312889 TATGGCACTATGTGCGTGCGGA-T-A-TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGT--GTGC-GATTCACTATGGCACTATGTGTGCGATTTAC
*
105312937 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTAC
*
105312985 TATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGA
105313028 ACATAATAAG
Statistics
Matches: 86, Mismatches: 2, Indels: 6
0.91 0.02 0.06
Matches are distributed among these distances:
45 2 0.02
46 5 0.06
47 1 0.01
48 78 0.91
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.35
Consensus pattern (48 bp):
TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTAC
Found at i:105323952 original size:40 final size:40
Alignment explanation
Indices: 105323908--105324093 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
105323898 GCTACTCGTT
* *
105323908 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
105323948 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
105323988 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
105324028 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
105324069 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
105324094 CATCATTCGA
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:105335784 original size:24 final size:24
Alignment explanation
Indices: 105335752--105335801 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
105335742 AATAAAGTAC
105335752 GAGGCATTACCGGACACATACTCA
1 GAGGCATTACCGGACACATACTCA
*
105335776 GAGGCATTACTGGACACATACTCA
1 GAGGCATTACCGGACACATACTCA
105335800 GA
1 GA
105335802 CATTTCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.34, C:0.26, G:0.22, T:0.18
Consensus pattern (24 bp):
GAGGCATTACCGGACACATACTCA
Found at i:105336110 original size:29 final size:29
Alignment explanation
Indices: 105336060--105336115 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
105336050 ACAGGGGTTT
*
105336060 TCACACGGCCAAGCACACGCCCGTGTCCC
1 TCACACGGCCAAGCACACGCCCCTGTCCC
* *
105336089 TCACGCGGCCTAG-ACACGGCCCCTGTC
1 TCACACGGCCAAGCACAC-GCCCCTGTC
105336116 ATTACTCGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 4 0.17
29 19 0.83
ACGTcount: A:0.18, C:0.46, G:0.23, T:0.12
Consensus pattern (29 bp):
TCACACGGCCAAGCACACGCCCCTGTCCC
Found at i:105338091 original size:29 final size:28
Alignment explanation
Indices: 105338021--105338095 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
105338011 ATACTCGATT
* *
105338021 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
105338049 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
105338078 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
105338096 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:105338112 original size:29 final size:29
Alignment explanation
Indices: 105338079--105338152 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
105338069 CCTTCGAGCT
105338079 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
105338108 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
105338137 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
105338153 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:105345069 original size:17 final size:16
Alignment explanation
Indices: 105345039--105345072 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
105345029 ATCAGTTCCA
105345039 TAATTTACTCACTATT
1 TAATTTACTCACTATT
*
105345055 TAATTCTACTTACTATT
1 TAATT-TACTCACTATT
105345072 T
1 T
105345073 TTAGTGATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.29, C:0.18, G:0.00, T:0.53
Consensus pattern (16 bp):
TAATTTACTCACTATT
Found at i:105345958 original size:29 final size:28
Alignment explanation
Indices: 105345888--105345962 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
105345878 ATACTCGATT
* *
105345888 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
105345916 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
105345945 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
105345963 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:105345979 original size:29 final size:29
Alignment explanation
Indices: 105345946--105346019 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
105345936 CCTTCGAGCT
105345946 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
105345975 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
105346004 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
105346020 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:105352296 original size:23 final size:23
Alignment explanation
Indices: 105352263--105352344 Score: 155
Period size: 23 Copynumber: 3.6 Consensus size: 23
105352253 TTTACTACCT
*
105352263 ATAACAGTTTCAGTTTGAAACAC
1 ATAACAATTTCAGTTTGAAACAC
105352286 ATAACAATTTCAGTTTGAAACAC
1 ATAACAATTTCAGTTTGAAACAC
105352309 ATAACAATTTCAGTTTGAAACAC
1 ATAACAATTTCAGTTTGAAACAC
105352332 ATAACAATTTCAG
1 ATAACAATTTCAG
105352345 AGAACTTATT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.30
Consensus pattern (23 bp):
ATAACAATTTCAGTTTGAAACAC
Found at i:105353921 original size:20 final size:18
Alignment explanation
Indices: 105353872--105353972 Score: 89
Period size: 20 Copynumber: 5.3 Consensus size: 18
105353862 GCTCTGATGA
105353872 GCTTCAGTTAGCCTTCGG
1 GCTTCAGTTAGCCTTCGG
*
105353890 GCTTTCATTTAGCACTT-GTG
1 GC-TTCAGTTAGC-CTTCG-G
105353910 TGCTTCAGTTAGCCTTCGG
1 -GCTTCAGTTAGCCTTCGG
*
105353929 GCTTCCATTTAGCACTT-GTG
1 GCTT-CAGTTAGC-CTTCG-G
*
105353949 TGCTTCAGTTAGCGTTCGG
1 -GCTTCAGTTAGCCTTCGG
105353968 GCTTC
1 GCTTC
105353973 CGTTTAGCAC
Statistics
Matches: 68, Mismatches: 5, Indels: 20
0.73 0.05 0.22
Matches are distributed among these distances:
18 11 0.16
19 25 0.37
20 26 0.38
21 6 0.09
ACGTcount: A:0.12, C:0.25, G:0.25, T:0.39
Consensus pattern (18 bp):
GCTTCAGTTAGCCTTCGG
Found at i:105353921 original size:39 final size:39
Alignment explanation
Indices: 105353872--105354011 Score: 199
Period size: 39 Copynumber: 3.6 Consensus size: 39
105353862 GCTCTGATGA
*
105353872 GCTTCAGTTAGCCTTCGGGCTTTCATTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTGTGT
105353911 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTGTGT
* * * *
105353950 GCTTCAGTTAGCGTTCGGGCTTCCGTTTAGCACGTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTGTGT
* * * *
105353989 GCTTTAGCTAGACTTCCGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
105354012 AGATCATGAT
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 91 1.00
ACGTcount: A:0.13, C:0.25, G:0.24, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTGTGT
Found at i:105353954 original size:21 final size:21
Alignment explanation
Indices: 105353890--105353954 Score: 75
Period size: 19 Copynumber: 3.2 Consensus size: 21
105353880 TAGCCTTCGG
*
105353890 GCTTTCATTTAGCACTTGTGT
1 GCTTCCATTTAGCACTTGTGT
*
105353911 GCTT-CAGTTAGC-CTTCG-G-
1 GCTTCCATTTAGCACTT-GTGT
105353929 GCTTCCATTTAGCACTTGTGT
1 GCTTCCATTTAGCACTTGTGT
105353950 GCTTC
1 GCTTC
105353955 AGTTAGCGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
18 4 0.11
19 12 0.32
20 12 0.32
21 9 0.24
ACGTcount: A:0.12, C:0.25, G:0.22, T:0.42
Consensus pattern (21 bp):
GCTTCCATTTAGCACTTGTGT
Found at i:105357381 original size:15 final size:15
Alignment explanation
Indices: 105357361--105357402 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
105357351 GCTGTAAATG
105357361 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
105357376 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
*
105357391 GGGTTTCCTTAT
1 GGATTTCCTTAT
105357403 TCTGGGCTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.14, C:0.17, G:0.17, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:105360098 original size:39 final size:39
Alignment explanation
Indices: 105360055--105360156 Score: 132
Period size: 39 Copynumber: 2.6 Consensus size: 39
105360045 AGCTCTGATA
* * * *
105360055 TGCTTCAGTTAGCCTTCGGGTTTTCGTTTAGCACTTGTG
1 TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
105360094 TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
* * * *
105360133 TACTTAAGCTAGACTTCGGGCTTC
1 TGCTTCAGTTAGCCTTCGGGCTTC
105360157 AGATCACGAT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.39
Consensus pattern (39 bp):
TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
Found at i:105364596 original size:122 final size:122
Alignment explanation
Indices: 105364377--105364596 Score: 307
Period size: 122 Copynumber: 1.8 Consensus size: 122
105364367 GAATTATGTG
* * * * * * * *
105364377 AATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGGG
1 AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGG
* **
105364442 CTAAGTCCCGAAGGCGATTATGCTAGTGATTATTTGTGTTTGAGCCTTAGTAACGAA
66 CTAAGTCCCGAAGACGATTATGCTAGAAATTATTTGTGTTTGAGCCTTAGTAACGAA
*
105364499 AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATATCCGGG
1 AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGG
*
105364564 CTAAGTCCCGAAGAC-ATTTATGCTGGAAATTAT
66 CTAAGTCCCGAAGACGA-TTATGCTAGAAATTAT
105364597 ATCCGGGTTA
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
121 1 0.01
122 83 0.99
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (122 bp):
AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGG
CTAAGTCCCGAAGACGATTATGCTAGAAATTATTTGTGTTTGAGCCTTAGTAACGAA
Found at i:105364641 original size:40 final size:39
Alignment explanation
Indices: 105364596--105364705 Score: 150
Period size: 40 Copynumber: 2.8 Consensus size: 39
105364586 CTGGAAATTA
* * *
105364596 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTCG-TAC
*
105364637 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCGTTC
1 TATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCGTAC
105364676 TATCCGGGCTAAGACCCGAAGGCATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTGTGC
105364706 ACGTGGTTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
39 9 0.14
40 54 0.86
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.22
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCGTAC
Found at i:105372632 original size:122 final size:122
Alignment explanation
Indices: 105372413--105372632 Score: 307
Period size: 122 Copynumber: 1.8 Consensus size: 122
105372403 AATTATGTGG
* * * * * * * *
105372413 AATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGGG
1 AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGG
* **
105372478 CTAAGTCCCGAAGGCGATTATGCTAGTGATTATTTGTGTTTGAGCCTTAGTAACGAA
66 CTAAGTCCCGAAGACGATTATGCTAGAAATTATTTGTGTTTGAGCCTTAGTAACGAA
*
105372535 AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATATCCGGG
1 AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGG
*
105372600 CTAAGTCCCGAAGAC-ATTTATGCTGGAAATTAT
66 CTAAGTCCCGAAGACGA-TTATGCTAGAAATTAT
105372633 ATCCGGGTTA
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
121 1 0.01
122 83 0.99
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (122 bp):
AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGG
CTAAGTCCCGAAGACGATTATGCTAGAAATTATTTGTGTTTGAGCCTTAGTAACGAA
Found at i:105372677 original size:40 final size:39
Alignment explanation
Indices: 105372632--105372741 Score: 150
Period size: 40 Copynumber: 2.8 Consensus size: 39
105372622 CTGGAAATTA
* * *
105372632 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTCG-TAC
*
105372673 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCGTTC
1 TATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCGTAC
105372712 TATCCGGGCTAAGACCCGAAGGCATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTGTGC
105372742 ACGTGGTTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
39 9 0.14
40 54 0.86
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.22
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCGTAC
Found at i:105377598 original size:27 final size:27
Alignment explanation
Indices: 105377568--105377915 Score: 520
Period size: 27 Copynumber: 12.9 Consensus size: 27
105377558 CCTTAATCGA
*
105377568 TAAAATGATTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
105377595 TAAAATGACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
105377622 TAAAATGACTATTTTGCCTTTAT-AGGG
1 TAAAATGACTGTTTTGCCCTTATGA-GG
*
105377649 TAAAATGACTGTTTTGCCCTTATGAAG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
105377676 TAAAATGACTATTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
105377703 TAAAATGACTCTTTTGCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
105377730 TAAAATGACTCTTTTGCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
105377757 TAAAATGACTCTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
105377784 TAAAATGACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
105377811 TAAAATGACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
105377838 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
105377865 TAAAATAACTGTTTTGCCCTT-TTATGG
1 TAAAATGACTGTTTTGCCCTTATGA-GG
* * *
105377892 TAAGATGACTGTTTTACCCCTATG
1 TAAAATGACTGTTTTGCCCTTATG
105377916 TGATGTATGT
Statistics
Matches: 296, Mismatches: 21, Indels: 7
0.91 0.06 0.02
Matches are distributed among these distances:
26 2 0.01
27 292 0.99
28 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.39
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGAGG
Found at i:105378237 original size:17 final size:18
Alignment explanation
Indices: 105378212--105378258 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
105378202 TTGCATATTG
*
105378212 TTTATTGTTACTGCACT-
1 TTTACTGTTACTGCACTA
*
105378229 TTTACTGTTACCGCACTA
1 TTTACTGTTACTGCACTA
105378247 TTTACTGTTACT
1 TTTACTGTTACT
105378259 ACAATGGACC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 15 0.58
18 11 0.42
ACGTcount: A:0.19, C:0.21, G:0.11, T:0.49
Consensus pattern (18 bp):
TTTACTGTTACTGCACTA
Found at i:105380572 original size:34 final size:34
Alignment explanation
Indices: 105380529--105380596 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
105380519 TCGTACATAT
105380529 GCGACTTTGATGCCTAATGAGTATATATATTGAC
1 GCGACTTTGATGCCTAATGAGTATATATATTGAC
105380563 GCGACTTTGATGCCTAATGAGTATATATATTGAC
1 GCGACTTTGATGCCTAATGAGTATATATATTGAC
105380597 TAAGTACCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (34 bp):
GCGACTTTGATGCCTAATGAGTATATATATTGAC
Found at i:105380980 original size:40 final size:40
Alignment explanation
Indices: 105380922--105381107 Score: 162
Period size: 40 Copynumber: 4.7 Consensus size: 40
105380912 CATTGGAATG
* * * *
105380922 ATATCC-GGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * *
105380961 ATATCTGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
105381001 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
105381041 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
105381081 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
105381108 CGAGCGAGTC
Statistics
Matches: 119, Mismatches: 24, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
39 8 0.07
40 107 0.90
41 4 0.03
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:105381022 original size:80 final size:79
Alignment explanation
Indices: 105380922--105381074 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
105380912 CATTGGAATG
* * ** * * *
105380922 ATATCCGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCTGGGCTAAGACCCGAAGGCAT
1 ATATCCGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAA
105380987 TCGTGCGAGTTGTT
66 TCGTGCGAGTTGTT
* * * *
105381001 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCC-GGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
105381066 ATCGTGCGA
65 ATCGTGCGA
105381075 ATCACTATAA
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
79 6 0.10
80 56 0.90
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (79 bp):
ATATCCGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAA
TCGTGCGAGTTGTT
Found at i:105383825 original size:27 final size:26
Alignment explanation
Indices: 105383795--105383861 Score: 107
Period size: 26 Copynumber: 2.5 Consensus size: 26
105383785 CTCGACTTGT
105383795 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCC-TGGTTTAC
**
105383822 AAAATTACCAAAATACCCTGGTTTGT
1 AAAATTACCAAAATACCCTGGTTTAC
105383848 AAAATTACCAAAAT
1 AAAATTACCAAAAT
105383862 GCCCCTGTAG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 20 0.53
27 18 0.47
ACGTcount: A:0.45, C:0.19, G:0.07, T:0.28
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTGGTTTAC
Found at i:105383851 original size:26 final size:26
Alignment explanation
Indices: 105383758--105383861 Score: 118
Period size: 27 Copynumber: 3.9 Consensus size: 26
105383748 CTTTAGTTTA
* **
105383758 CCTGATTTGTGAAATTACTGAAATAC
1 CCTGATTTGTAAAATTACCAAAATAC
*
105383784 CCTCGACTTGTAAAATTACCAAAATAC
1 CCT-GATTTGTAAAATTACCAAAATAC
* **
105383811 CCTTGGTTTACAAAATTACCAAAATAC
1 CC-TGATTTGTAAAATTACCAAAATAC
*
105383838 CCTGGTTTGTAAAATTACCAAAAT
1 CCTGATTTGTAAAATTACCAAAAT
105383862 GCCCCTGTAG
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
26 23 0.35
27 42 0.64
28 1 0.02
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (26 bp):
CCTGATTTGTAAAATTACCAAAATAC
Found at i:105383880 original size:27 final size:27
Alignment explanation
Indices: 105383850--105384019 Score: 232
Period size: 27 Copynumber: 6.3 Consensus size: 27
105383840 TGGTTTGTAA
* *
105383850 AATTACCAAAATGCCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
105383877 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
105383904 AGTTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
105383931 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
105383958 AATTACCGAAATGCCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
105383985 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
105384012 AATTACCG
1 AATTACCG
105384020 TGATAACCTT
Statistics
Matches: 126, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:105383930 original size:54 final size:54
Alignment explanation
Indices: 105383850--105384019 Score: 259
Period size: 54 Copynumber: 3.1 Consensus size: 54
105383840 TGGTTTGTAA
*
105383850 AATTACCAAAATGCCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATGCCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAG
* * * * *
105383904 AGTTACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATGCCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAG
* * *
105383958 AATTACCGAAATGCCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATGCCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAG
105384012 AATTACCG
1 AATTACCG
105384020 TGATAACCTT
Statistics
Matches: 102, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 102 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (54 bp):
AATTACCGAAATGCCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAG
Found at i:105384036 original size:27 final size:27
Alignment explanation
Indices: 105383850--105384045 Score: 185
Period size: 27 Copynumber: 7.3 Consensus size: 27
105383840 TGGTTTGTAA
* * * *
105383850 AATTACCAAAATGCCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
* *
105383877 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
* * * *
105383904 AGTTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
** * *
105383931 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
* *
105383958 AATTACCGAAATGCCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
* *
105383985 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
** * * *
105384012 AATTACCGTGATAACCTTATGGGGTAA
1 AATTACCGAAATACCCTTATAGGGTAG
105384039 AATTACC
1 AATTACC
105384046 ATTTTGCCCC
Statistics
Matches: 146, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCTTATAGGGTAG
Found at i:105384037 original size:81 final size:81
Alignment explanation
Indices: 105383850--105384045 Score: 212
Period size: 81 Copynumber: 2.4 Consensus size: 81
105383840 TGGTTTGTAA
** * * ** *
105383850 AATTACCAAAATGCCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAGTTACTGAAA
1 AATTACCAAAATAACCCTATAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACCGAAA
*
105383915 TACCCCTGTAGGGTAG
66 TACCCCTATAGGGTAG
* * * * * *
105383931 AATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATGCCCTTGTAGGGTAGAAATACCGAAA
1 AATTACCAAAATAACCCTATAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACCGAAA
105383996 TACCCCTATAGGGTAG
66 TACCCCTATAGGGTAG
*** * * *
105384012 AATTACCGTGATAACCTTATGGGGTAAAATTACC
1 AATTACCAAAATAACCCTATAGGGTAGAATTACC
105384046 ATTTTGCCCC
Statistics
Matches: 96, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 96 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (81 bp):
AATTACCAAAATAACCCTATAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACCGAAA
TACCCCTATAGGGTAG
Found at i:105384173 original size:11 final size:11
Alignment explanation
Indices: 105384157--105384221 Score: 53
Period size: 11 Copynumber: 6.1 Consensus size: 11
105384147 ATATTGTTAT
105384157 ACATGATATGC
1 ACATGATATGC
105384168 ACATGATATG-
1 ACATGATATGC
**
105384178 TTATGATATGC
1 ACATGATATGC
*
105384189 ATATGATATGC
1 ACATGATATGC
* *
105384200 -TATGATATAC
1 ACATGATATGC
* *
105384210 TCATTATATGC
1 ACATGATATGC
105384221 A
1 A
105384222 TGGGTTGGGT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
10 17 0.39
11 27 0.61
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.37
Consensus pattern (11 bp):
ACATGATATGC
Found at i:105384184 original size:21 final size:21
Alignment explanation
Indices: 105384159--105384207 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
105384149 ATTGTTATAC
*
105384159 ATGATATGCACATGATATGTT
1 ATGATATGCACATGATATGCT
*
105384180 ATGATATGCATATGATATGCT
1 ATGATATGCACATGATATGCT
105384201 ATGATAT
1 ATGATAT
105384208 ACTCATTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (21 bp):
ATGATATGCACATGATATGCT
Found at i:105384187 original size:5 final size:5
Alignment explanation
Indices: 105384159--105384207 Score: 53
Period size: 5 Copynumber: 9.4 Consensus size: 5
105384149 ATTGTTATAC
* * *
105384159 ATGAT ATGCAC ATGAT ATGTT ATGAT ATGCAT ATGAT ATGCT ATGAT AT
1 ATGAT ATG-AT ATGAT ATGAT ATGAT ATG-AT ATGAT ATGAT ATGAT AT
105384208 ACTCATTATA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
5 27 0.75
6 9 0.25
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (5 bp):
ATGAT
Found at i:105384218 original size:21 final size:21
Alignment explanation
Indices: 105384159--105384220 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
105384149 ATTGTTATAC
* *
105384159 ATGATATGCACATGATATGTT
1 ATGATATGCTCATGATATGCT
105384180 ATGATATGCAT-ATGATATGCT
1 ATGATATGC-TCATGATATGCT
* *
105384201 ATGATATACTCATTATATGC
1 ATGATATGCTCATGATATGC
105384221 ATGGGTTGGG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
20 1 0.03
21 34 0.97
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (21 bp):
ATGATATGCTCATGATATGCT
Found at i:105384287 original size:24 final size:24
Alignment explanation
Indices: 105384255--105384301 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
105384245 AGGAAGTGCA
**
105384255 AAAAGGGCTTTGCC-CCAGTTATT
1 AAAAGGGCTAAGCCTCCAGTTATT
105384278 AAAAGAGGCTAAGCCTCCAGTTAT
1 AAAAG-GGCTAAGCCTCCAGTTAT
105384302 ATGATAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTAAGCCTCCAGTTATT
Found at i:105390981 original size:47 final size:47
Alignment explanation
Indices: 105390928--105391210 Score: 498
Period size: 47 Copynumber: 6.1 Consensus size: 47
105390918 TTAGGATTTT
*
105390928 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
105390975 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
105391022 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
105391069 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGG-CGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
105391115 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
105391162 ATGTGATGAATGTGAACATGTATATATG-GGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
105391208 ATG
1 ATG
105391211 CGAAATGTGT
Statistics
Matches: 229, Mismatches: 6, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
46 65 0.28
47 164 0.72
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:105391140 original size:140 final size:140
Alignment explanation
Indices: 105390928--105391210 Score: 505
Period size: 140 Copynumber: 2.0 Consensus size: 140
105390918 TTAGGATTTT
105390928 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAACA
* *
105390993 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGG
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATG-GATAAGG
105391058 CCGAATGGCCA
130 CCGAATGGCCA
105391069 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAACA
* *
105391133 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGGGTAAGGC
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGGATAAGGC
*
105391198 CGAATGGCTA
131 CGAATGGCCA
105391208 ATG
1 ATG
105391211 CGAAATGTGT
Statistics
Matches: 137, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
139 19 0.14
140 82 0.60
141 36 0.26
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.27
Consensus pattern (140 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGGATAAGGC
CGAATGGCCA
Found at i:105391202 original size:93 final size:94
Alignment explanation
Indices: 105390928--105391210 Score: 498
Period size: 93 Copynumber: 3.0 Consensus size: 94
105390918 TTAGGATTTT
*
105390928 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
105390993 TGCGTATGTGTGATAAGGCCGAATGGCCA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
105391022 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
105391087 TGCGTATGTGTGATAAGG-CGAATGGCCA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
105391115 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
** * * *
105391180 TGTATATATG-GGTAAGGCCGAATGGCTA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
105391208 ATG
1 ATG
105391211 CGAAATGTGT
Statistics
Matches: 182, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
92 6 0.03
93 94 0.52
94 82 0.45
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:105391320 original size:46 final size:45
Alignment explanation
Indices: 105391185--105391320 Score: 191
Period size: 46 Copynumber: 3.0 Consensus size: 45
105391175 GAACATGTAT
* *
105391185 ATATGGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
*
105391230 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATG-GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
105391276 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATG-GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
105391321 TGTATATATA
Statistics
Matches: 81, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
45 5 0.06
46 76 0.94
ACGTcount: A:0.35, C:0.09, G:0.32, T:0.25
Consensus pattern (45 bp):
ATATGGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:105391563 original size:37 final size:37
Alignment explanation
Indices: 105391510--105391621 Score: 179
Period size: 37 Copynumber: 3.0 Consensus size: 37
105391500 GTGGTGACTA
*
105391510 TGTCTGGGTTAAGACCCGATAACTTCGTGTGGAGATTT
1 TGTCCGGG-TAAGACCCGATAACTTCGTGTGGAGATTT
* *
105391548 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
*
105391585 TGTCCGGGTAAGACCTGATAACTTCGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
105391622 CATCTGAGCT
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
37 61 0.90
38 7 0.10
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.31
Consensus pattern (37 bp):
TGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
Found at i:105392945 original size:40 final size:40
Alignment explanation
Indices: 105392890--105393380 Score: 786
Period size: 40 Copynumber: 12.3 Consensus size: 40
105392880 TGAGAGTTAT
* *
105392890 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* * * *
105392930 ATATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTA
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
105392970 ATATGTCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* *
105393010 ATATGTCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
105393050 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
105393090 ATATATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* * *
105393130 ATATATTCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGAG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* *
105393170 ATATATCCGGGCTAAGTTCCGAAGAGCATTAGTGCTAGAG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
105393210 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* *
105393250 ATATATCCGGGCTAAGTTTCGAAGAGCATTCATGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
105393290 ATATATCCGGGCTAAGTTCCGAAGAGCATTGGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* *
105393330 ATATAAT-CGGGCTAAGTCCCGAAGAGCAATCGTGCTAGTG
1 ATAT-ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
105393370 ATATATCCGGG
1 ATATATCCGGG
105393381 TTAAACCTCG
Statistics
Matches: 421, Mismatches: 28, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
39 2 0.00
40 417 0.99
41 2 0.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
Found at i:105393508 original size:57 final size:57
Alignment explanation
Indices: 105393412--105393546 Score: 141
Period size: 57 Copynumber: 2.4 Consensus size: 57
105393402 GCTAGAATTA
*
105393412 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTAGT
* ** * ** *
105393469 TGAGGCACTAG-GTGTGCGAGTTCTTTAATCGAGTGCTATGTGTGCGAAATCAGTCAG-
1 TGAGGCACT-GTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGT-AGT
*
105393526 TG-GGCACTGTGTATGCGAAGT
1 TGAGGCACTGTGTGTGC-AAGT
105393547 GTGTTTCATG
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
55 1 0.02
56 11 0.17
57 49 0.77
58 3 0.05
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (57 bp):
TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTAGT
Found at i:105397092 original size:47 final size:47
Alignment explanation
Indices: 105397041--105397271 Score: 385
Period size: 47 Copynumber: 5.0 Consensus size: 47
105397031 TTAGGATTTT
*
105397041 ATGTGATGAATGTGAACATGCGTATGTTTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
105397088 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
105397135 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
105397182 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
105397229 ATGTGATGAATGTGAACAT--GTATATATGGTAAGGCCGAATGGC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGC
105397272 TATGCGAAAT
Statistics
Matches: 176, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
45 20 0.11
47 156 0.89
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:105397379 original size:46 final size:46
Alignment explanation
Indices: 105397250--105397384 Score: 175
Period size: 46 Copynumber: 3.0 Consensus size: 46
105397240 GTGAACATGT
* * *
105397250 ATATATGGTAAGGCCGAATGGCT-ATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
105397295 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
105397341 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATG-GATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
105397385 TGTATATATA
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
45 24 0.31
46 54 0.69
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:105397635 original size:37 final size:37
Alignment explanation
Indices: 105397569--105397680 Score: 170
Period size: 37 Copynumber: 3.0 Consensus size: 37
105397559 GTGGTGACTA
* *
105397569 TGTCTGGGTTAAGACCTGATAACTTCGTGTGGAGATTT
1 TGTCCGGG-TAAGACCCGATAACTTCGTGTGGAGATTT
* *
105397607 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
*
105397644 TGTCCAGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
105397681 CATCTGAGCT
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
37 60 0.90
38 7 0.10
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.31
Consensus pattern (37 bp):
TGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
Found at i:105401645 original size:29 final size:29
Alignment explanation
Indices: 105401590--105401666 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
105401580 GTGAGCATGA
* *
105401590 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAACGGGCC
*
105401618 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAACGGGCC
* *
105401647 ATATACAGGTGATTTGGGCC
1 ATATAAATGTGATTTGGGCC
105401667 ATATGAATAT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 11 0.26
29 32 0.74
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAACGGGCC
Found at i:105402006 original size:25 final size:26
Alignment explanation
Indices: 105401978--105402031 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
105401968 AAACCGTAAT
* *
105401978 TAAGGG-AAAATTACCAAAATGCCCC
1 TAAGGGAAAAATGACCAAAATACCCC
105402003 TAAGGGAAAAAATGACCAAAATACCCC
1 TAAGGG-AAAAATGACCAAAATACCCC
105402030 TA
1 TA
105402032 GGTGTAGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.24
27 19 0.76
ACGTcount: A:0.48, C:0.22, G:0.15, T:0.15
Consensus pattern (26 bp):
TAAGGGAAAAATGACCAAAATACCCC
Found at i:105404335 original size:27 final size:27
Alignment explanation
Indices: 105404305--105404502 Score: 263
Period size: 27 Copynumber: 7.3 Consensus size: 27
105404295 TACTGAAATG
** * *
105404305 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* * *
105404332 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
105404359 CCCTCGTTTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* *
105404386 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
105404413 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* *
105404440 CCCTCGATTTACAAAATTACCATTGTA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
105404467 CCCT-TAGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAAAATTACCGTTTTA
105404494 CCCTCGATT
1 CCCTCGATT
105404503 GTGAAATTAC
Statistics
Matches: 151, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 149 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCGTTTTA
Found at i:105404627 original size:81 final size:81
Alignment explanation
Indices: 105404534--105404713 Score: 240
Period size: 81 Copynumber: 2.2 Consensus size: 81
105404524 TGTAGGATAG
* *
105404534 AATTATCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAA
1 AATTATCGAAATACCCTTAGTTTGTAAAATTACCAAAATACCCTC-AATTTGTAAAATTACCAAA
**
105404598 ATACCCCT-AGTTTGTAA
65 ATACCCCTGA-TTTACAA
* * *
105404615 AATTATCGAAATACCAC-TGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
1 AATTATCGAAATACC-CTTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAA
105404679 ATACCCCTGATTTACAA
65 ATACCCCTGATTTACAA
*
105404696 AATTATAGAAATACCCTT
1 AATTATCGAAATACCCTT
105404714 GACTTTCTAA
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
80 1 0.01
81 83 0.95
82 3 0.03
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AATTATCGAAATACCCTTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
TACCCCTGATTTACAA
Found at i:105404691 original size:27 final size:27
Alignment explanation
Indices: 105404534--105404686 Score: 209
Period size: 27 Copynumber: 5.7 Consensus size: 27
105404524 TGTAGGATAG
* *
105404534 AATTATCAAAATACCCTTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
105404561 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
105404588 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * * *
105404615 AATTATCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
105404642 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
105404669 AATTACCAAAATACCCCT
1 AATTACCAAAATACCCCT
105404687 GATTTACAAA
Statistics
Matches: 111, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
26 3 0.03
27 104 0.94
28 4 0.04
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:105404699 original size:54 final size:54
Alignment explanation
Indices: 105404366--105404712 Score: 193
Period size: 54 Copynumber: 6.4 Consensus size: 54
105404356 TCACCCTCGT
*** * * ***
105404366 TTTACAAAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTA-CCCTCGA
1 TTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GA
*** * ** *** *
105404420 TTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCATTGTA-CCCTTA
1 TTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGA
*** * * **
105404473 GTTTACAAAATTACCGTTTTACCCTCGA-TTGTGAAATTACTGAAATACCCCTG-
1 -TTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGA
** * * * * * *
105404526 TAGGATAGAATTATCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCT-A
1 T-TTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGA
** * * * * * *
105404580 GTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTATCGAAATACCACTGG
1 -TTTACAAAATTACCGAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTGA
***
105404635 TTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGA
1 TTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGA
**
105404689 TTTACAAAATTATAGAAATACCCT
1 TTTACAAAATTACCGAAATACCCT
105404713 TGACTTTCTA
Statistics
Matches: 235, Mismatches: 49, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
52 1 0.00
53 26 0.11
54 206 0.88
55 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.33
Consensus pattern (54 bp):
TTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGA
Found at i:105404707 original size:27 final size:27
Alignment explanation
Indices: 105404677--105404770 Score: 118
Period size: 27 Copynumber: 3.4 Consensus size: 27
105404667 AAAATTACCA
*
105404677 AAATACCCCTGATTTACAAAATTATAG
1 AAATACCCTTGATTTACAAAATTATAG
105404704 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTTGA-TTTAC--AAAATTATAG
* * *
105404733 AAATACCATTGGTTTACAAAATTATTG
1 AAATACCCTTGATTTACAAAATTATAG
105404760 AAATACCCTTG
1 AAATACCCTTG
105404771 GTTTGTAGAT
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
27 31 0.53
28 6 0.10
29 21 0.36
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATACCCTTGATTTACAAAATTATAG
Found at i:105404892 original size:27 final size:27
Alignment explanation
Indices: 105404828--105404892 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
105404818 ACCCCTAATA
* *
105404828 GGTAAAAAGACCGTAAAGCCTCTGTAG
1 GGTAAAATGACCGTAAACCCTCTGTAG
* *
105404855 GGTAAAGTGACCGTAATACCCT-TGTAT
1 GGTAAAATGACCGTAA-ACCCTCTGTAG
105404882 GGTAAAATGAC
1 GGTAAAATGAC
105404893 GAATATGTCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 28 0.88
28 4 0.12
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCGTAAACCCTCTGTAG
Found at i:105405625 original size:20 final size:20
Alignment explanation
Indices: 105405600--105405666 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
105405590 GATATGATAT
*
105405600 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
105405620 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
105405640 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
105405660 ACATGAT
1 ACATGAT
105405667 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:105405780 original size:52 final size:51
Alignment explanation
Indices: 105405724--105405851 Score: 199
Period size: 52 Copynumber: 2.5 Consensus size: 51
105405714 GCAAAAGGAT
*
105405724 TTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGC
1 TTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCAAAAAGGGC
*
105405776 TTATGCCCTAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGC
1 TTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGC
105405827 TT-TGCCCCAG-TTATT-AAAAGAGGCT
1 TTATGCCCCAGTTTATTGAAAAG-GGCT
105405852 AGGCCTCCAG
Statistics
Matches: 72, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
48 5 0.07
49 9 0.12
50 7 0.10
51 24 0.33
52 27 0.38
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (51 bp):
TTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGC
Found at i:105405813 original size:25 final size:26
Alignment explanation
Indices: 105405724--105405851 Score: 165
Period size: 26 Copynumber: 5.0 Consensus size: 26
105405714 GCAAAAGGAT
105405724 TTATGCCCCAGTTTATTGAAAAGGGC
1 TTATGCCCCAGTTTATTGAAAAGGGC
**
105405750 TTATGCCCCAGTTTACCGAAAAGGGC
1 TTATGCCCCAGTTTATTGAAAAGGGC
*
105405776 TTATGCCCTAGTTTATTGAAAAGGGC
1 TTATGCCCCAGTTTATTGAAAAGGGC
***
105405802 TT-TGCCCCAGTTTACCAAAAAGGGC
1 TTATGCCCCAGTTTATTGAAAAGGGC
105405827 TT-TGCCCCAG-TTATT-AAAAGAGGC
1 TTATGCCCCAGTTTATTGAAAAG-GGC
105405851 T
1 T
105405852 AGGCCTCCAG
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
23 5 0.06
24 7 0.08
25 29 0.32
26 49 0.54
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
TTATGCCCCAGTTTATTGAAAAGGGC
Found at i:105406043 original size:42 final size:42
Alignment explanation
Indices: 105405984--105406075 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
105405974 TAGTCTCCCC
* * ** *
105405984 AAATGGCCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
105406026 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
105406068 AAATGGGC
1 AAATGGGC
105406076 CTATGGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:105406134 original size:31 final size:31
Alignment explanation
Indices: 105406099--105406177 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
105406089 CGTTTACAGT
105406099 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
105406130 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
105406161 AAAGGCTTCGGCTCAGT
1 AAAGGCTTCGGCCCAGT
105406178 AACCGTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:105415631 original size:34 final size:34
Alignment explanation
Indices: 105415588--105415670 Score: 114
Period size: 34 Copynumber: 2.5 Consensus size: 34
105415578 AGAGTGAATA
*
105415588 CATTT-AGTAACAGTAGCAGTTTGGGCATTAGCC
1 CATTTCAGTAACAGTAGCAGTCTGGGCATTAGCC
* * *
105415621 CATTTCAGTAACAGTAGGAGTCTGGGCTTTAGGC
1 CATTTCAGTAACAGTAGCAGTCTGGGCATTAGCC
*
105415655 CATTTCAGTAATAGTA
1 CATTTCAGTAACAGTA
105415671 ATCAGTGCAG
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 5 0.11
34 39 0.89
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (34 bp):
CATTTCAGTAACAGTAGCAGTCTGGGCATTAGCC
Found at i:105415683 original size:18 final size:18
Alignment explanation
Indices: 105415660--105415718 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
105415650 TAGGCCATTT
*
105415660 CAGTAATAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
* * *
105415678 CAGTAACAATAAGCAATG
1 CAGTAACAGTAATCAGTG
*
105415696 CAGTAACAGTAATCGGTG
1 CAGTAACAGTAATCAGTG
105415714 CAGTA
1 CAGTA
105415719 TGCAAGCATA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (18 bp):
CAGTAACAGTAATCAGTG
Found at i:105416150 original size:27 final size:27
Alignment explanation
Indices: 105416086--105416173 Score: 104
Period size: 27 Copynumber: 3.3 Consensus size: 27
105416076 AGGTATTATA
* **
105416086 GTCATTTTACCATACAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
** *
105416113 GTTGTTCTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
105416140 ATCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
105416167 GTCATTT
1 GTCATTT
105416174 CATCACAAAA
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:105416281 original size:27 final size:27
Alignment explanation
Indices: 105416167--105416283 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
105416157 GGGTATTTCG
* ** *
105416167 GTCATTTCATCACAAAAGGGCAAAATC
1 GTCATTTTATCACATGAGGGAAAAATC
* * *
105416194 ATTATTTTATCACATGAGGGAAAAATT
1 GTCATTTTATCACATGAGGGAAAAATC
*
105416221 GTCGTTTTATCACATGAGGGAAAAATC
1 GTCATTTTATCACATGAGGGAAAAATC
* *
105416248 GTTATTTTATCACATGAGGGGAAAATC
1 GTCATTTTATCACATGAGGGAAAAATC
*
105416275 GCCATTTTA
1 GTCATTTTA
105416284 ATCCCATAGA
Statistics
Matches: 74, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Consensus pattern (27 bp):
GTCATTTTATCACATGAGGGAAAAATC
Found at i:105416283 original size:54 final size:54
Alignment explanation
Indices: 105416169--105416283 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 54
105416159 GTATTTCGGT
* * * *
105416169 CATTTCATCACAAAAGGGCAAAATCATTATTTTATCACATGAGGGAAAAATTGT
1 CATTTTATCACAAAAGGGAAAAATCATTATTTTATCACATGAGGGAAAAATCGC
* ** * *
105416223 CGTTTTATCACATGAGGGAAAAATCGTTATTTTATCACATGAGGGGAAAATCGC
1 CATTTTATCACAAAAGGGAAAAATCATTATTTTATCACATGAGGGAAAAATCGC
105416277 CATTTTA
1 CATTTTA
105416284 ATCCCATAGA
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (54 bp):
CATTTTATCACAAAAGGGAAAAATCATTATTTTATCACATGAGGGAAAAATCGC
Found at i:105417073 original size:26 final size:26
Alignment explanation
Indices: 105417044--105417125 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
105417034 TGATACAAAT
105417044 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
105417070 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105417096 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105417122 TGAT
1 TGAT
105417126 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:105424138 original size:26 final size:26
Alignment explanation
Indices: 105424109--105424190 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
105424099 TGATACAAAT
105424109 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
105424135 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105424161 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105424187 TGAT
1 TGAT
105424191 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:105426826 original size:40 final size:40
Alignment explanation
Indices: 105426767--105426897 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
105426757 CGGGACTTTA
* * *
105426767 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
105426807 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
105426847 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
105426887 CCCGGATATAA
1 CCCGGATATAA
105426898 TTTCAGCATA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:105426930 original size:39 final size:40
Alignment explanation
Indices: 105426784--105426934 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
105426774 ATCACGATTT
* * * *
105426784 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
*
105426824 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
105426864 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
105426903 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
105426935 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 31 0.32
40 64 0.66
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
Found at i:105434745 original size:40 final size:40
Alignment explanation
Indices: 105434686--105434813 Score: 166
Period size: 40 Copynumber: 3.2 Consensus size: 40
105434676 CGGGACTTTA
* * *
105434686 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
105434726 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
105434766 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
105434806 CCCGGATA
1 CCCGGATA
105434814 AAATTTCAGC
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:105434849 original size:39 final size:40
Alignment explanation
Indices: 105434703--105434852 Score: 160
Period size: 40 Copynumber: 3.8 Consensus size: 40
105434693 ATCACGATTT
* ** * *
105434703 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAACTACTA
* *
105434743 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAAAACTACTA
* * *
105434783 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTC-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAACTACTA
* * *
105434822 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATA
105434853 TCATTCAATT
Statistics
Matches: 95, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
39 30 0.32
40 63 0.66
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAACTACTA
Found at i:105445311 original size:29 final size:29
Alignment explanation
Indices: 105445264--105445319 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
105445254 TACAGCCTGG
105445264 CACACAGCCTGGAACATGGCCATGTGGCT
1 CACACAGCCTGGAACATGGCCATGTGGCT
* * *
105445293 CACACAGCTTGGCATATGGCCATGTGG
1 CACACAGCCTGGAACATGGCCATGTGG
105445320 TGTCGACTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (29 bp):
CACACAGCCTGGAACATGGCCATGTGGCT
Done.