Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 338 of 433
Found at i:105766143 original size:79 final size:79
Alignment explanation
Indices: 105765927--105766133 Score: 247
Period size: 79 Copynumber: 2.6 Consensus size: 79
105765917 GTGGCTAATT
* **
105765927 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGAATTTG
* * *
105765992 TGCGAGCTATTATAT
65 TGCAAGCTACTATAA
* * *
105766007 CCGAGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGAATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGAATTTG
*
105766071 TGCAAGTTACTATAA
65 TGCAAGCTACTATAA
* * * *
105766086 CTGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
105766134 ACTCCGAAGG
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
78 1 0.01
79 70 0.65
80 36 0.34
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGAATTTGT
GCAAGCTACTATAA
Found at i:105767957 original size:13 final size:14
Alignment explanation
Indices: 105767932--105767970 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
105767922 TTGTTTCATT
105767932 AAAAATGACTTTC-G
1 AAAAATGA-TTTCTG
105767946 AAAAATGATTTCTG
1 AAAAATGATTTCTG
*
105767960 GAAAATGATTT
1 AAAAATGATTT
105767971 ACTTTTCTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 4 0.17
14 19 0.83
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (14 bp):
AAAAATGATTTCTG
Found at i:105768570 original size:22 final size:22
Alignment explanation
Indices: 105768526--105768585 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
105768516 TTAAAATAAA
*
105768526 ATTAAAATATTAAA-TA-ATTT
1 ATTAAAATAATAAATTATATTT
105768546 ATTAAAATAATAAATTATATTT
1 ATTAAAATAATAAATTATATTT
* * *
105768568 ATTATATTAATAATTTAT
1 ATTAAAATAATAAATTAT
105768586 TATATGACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.38
21 2 0.06
22 19 0.56
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTAAAATAATAAATTATATTT
Found at i:105772682 original size:143 final size:142
Alignment explanation
Indices: 105772535--105772822 Score: 506
Period size: 143 Copynumber: 2.0 Consensus size: 142
105772525 TAATTCTAAA
*
105772535 AAAATTCAATAAATTTAGATCTAAATATTTACAAATTTTGTCAATTTAATTCTAATTCTAAAAGT
1 AAAATTCAATAAATTTAGATCTAAATATTTACAAATTTTGTCAACTTAATTCTAATTCTAAAAGT
105772600 TTAAAAAAAAGAAAACATATTTAAAAAATTATTTTT-GTATAAAAATTGATAAAAATGATATAAA
66 TTAAAAAAAAGAAAA-ATATTTAAAAAATTATTTTTAG-ATAAAAATTGATAAAAATGATATAAA
*
105772664 AGTCTAAAAAGAAT
129 AATCTAAAAAGAAT
105772678 AAAATTCAATAAATTTAGATCTAAATATTTACAAATTTTGTCAACTTAATTCTAATTCTAAAAGT
1 AAAATTCAATAAATTTAGATCTAAATATTTACAAATTTTGTCAACTTAATTCTAATTCTAAAAGT
* * *
105772743 TTTAAAAAAGGAAAAATATTTAAAAATTTATTTTTAGATAAAAATTGATAAAAATGATATAAAAA
66 TTAAAAAAAAGAAAAATATTTAAAAAATTATTTTTAGATAAAAATTGATAAAAATGATATAAAAA
105772808 TCTAAAAAGAAT
131 TCTAAAAAGAAT
105772820 AAA
1 AAA
105772823 TAAATTATAA
Statistics
Matches: 139, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
142 61 0.44
143 78 0.56
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (142 bp):
AAAATTCAATAAATTTAGATCTAAATATTTACAAATTTTGTCAACTTAATTCTAATTCTAAAAGT
TTAAAAAAAAGAAAAATATTTAAAAAATTATTTTTAGATAAAAATTGATAAAAATGATATAAAAA
TCTAAAAAGAAT
Found at i:105775461 original size:19 final size:19
Alignment explanation
Indices: 105775437--105775474 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
105775427 ATTCCTTCGA
105775437 AAATTGAATTGAAATAGTT
1 AAATTGAATTGAAATAGTT
105775456 AAATTGAATTGAAATAGTT
1 AAATTGAATTGAAATAGTT
105775475 GAACACCATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (19 bp):
AAATTGAATTGAAATAGTT
Found at i:105783337 original size:20 final size:20
Alignment explanation
Indices: 105783312--105783351 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
105783302 AACAGATCAG
105783312 ACTAGCCATTCATAATCAAT
1 ACTAGCCATTCATAATCAAT
105783332 ACTAGCCATTCATAATCAAT
1 ACTAGCCATTCATAATCAAT
105783352 CATGCATAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.25, G:0.05, T:0.30
Consensus pattern (20 bp):
ACTAGCCATTCATAATCAAT
Found at i:105784200 original size:39 final size:39
Alignment explanation
Indices: 105784146--105784232 Score: 111
Period size: 39 Copynumber: 2.2 Consensus size: 39
105784136 TCGGCAATTT
* * *
105784146 GCCTGTTAGGTATAAACCTAAACTTAACACTAGCATGAG
1 GCCTGCTAGGTATAAACCTAAACTTAACACCAGCACGAG
* * * *
105784185 GCCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTAAACTTAACACCAGCACGAG
105784224 GCCTGCTAG
1 GCCTGCTAG
105784233 ACATTAAGTC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTAAACTTAACACCAGCACGAG
Found at i:105786970 original size:46 final size:47
Alignment explanation
Indices: 105786866--105786985 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 47
105786856 TGTCTTCGAC
** * *
105786866 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* * *
105786914 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
*
105786960 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
105786986 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 33 0.52
48 30 0.48
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:105797137 original size:15 final size:15
Alignment explanation
Indices: 105797117--105797149 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
105797107 AATGGCCGAT
*
105797117 GTGGTGAATGTGAAA
1 GTGGTGAACGTGAAA
105797132 GTGGTGAACGTGAAA
1 GTGGTGAACGTGAAA
105797147 GTG
1 GTG
105797150 TATGTATATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.30, C:0.03, G:0.42, T:0.24
Consensus pattern (15 bp):
GTGGTGAACGTGAAA
Found at i:105797204 original size:49 final size:49
Alignment explanation
Indices: 105797132--105797231 Score: 173
Period size: 49 Copynumber: 2.0 Consensus size: 49
105797122 GAATGTGAAA
*
105797132 GTGGTGAACGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGAT
1 GTGGTGAACGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCAAT
* *
105797181 GTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCAAT
1 GTGGTGAACGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCAAT
105797230 GT
1 GT
105797232 AAAATATATG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.30
Consensus pattern (49 bp):
GTGGTGAACGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCAAT
Found at i:105797377 original size:37 final size:37
Alignment explanation
Indices: 105797327--105797442 Score: 214
Period size: 37 Copynumber: 3.1 Consensus size: 37
105797317 GGAATATGTT
105797327 CCGGGCGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGCGAGACCCGATGACTACGTGTGGAGATTATGA
105797364 CCGGGCGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGCGAGACCCGATGACTACGTGTGGAGATTATGA
**
105797401 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGCGAGACCCGATGACTACGTGTGGAGATTATGA
105797438 CCGGG
1 CCGGG
105797443 TAAGACTTCT
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 77 1.00
ACGTcount: A:0.24, C:0.22, G:0.35, T:0.19
Consensus pattern (37 bp):
CCGGGCGAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:105803474 original size:53 final size:53
Alignment explanation
Indices: 105803328--105803521 Score: 158
Period size: 53 Copynumber: 3.6 Consensus size: 53
105803318 AGGATACTAA
* * * * * * * *
105803328 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGCAAGGAAATCAT
1 GTAAGACCACGCCAAGACATGGCAATGGTAAGTTC-ATAAGGCAAAGATACCAC
* * * * * * * *
105803382 GTTAGA-C-CGTCAAGACATGGCATTGATAAACTACTATAAGGCAAAGATCCCAT
1 GTAAGACCACGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAAGATACCAC
* * *
105803435 GTAAGACCACGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGGATACCAC
1 GTAAGACCACGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAAGATACCAC
* *
105803488 GTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GTAAGACCACGCCAAGACATGGCAATGGTAAGTT
105803522 TAAAAAGGAA
Statistics
Matches: 110, Mismatches: 27, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
52 16 0.15
53 69 0.63
54 9 0.08
55 16 0.15
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.20
Consensus pattern (53 bp):
GTAAGACCACGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAAGATACCAC
Found at i:105810941 original size:53 final size:53
Alignment explanation
Indices: 105810768--105810970 Score: 196
Period size: 53 Copynumber: 3.8 Consensus size: 53
105810758 ATTAGGGTTT
* * * * *
105810768 AAGGATACCAAGTAAGACCATGCCAAGGCAT-GCATTGGTAAGTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * * * * * * **
105810820 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAAAC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * *
105810875 AA--ATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
105810926 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
105810971 TAAAAAGGAA
Statistics
Matches: 117, Mismatches: 29, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
51 7 0.06
52 29 0.25
53 72 0.62
54 3 0.03
55 6 0.05
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:105818480 original size:40 final size:39
Alignment explanation
Indices: 105818435--105818561 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
105818425 CGGAATATAA
105818435 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
105818475 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
105818515 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
105818555 CCGGATA
1 CCGGATA
105818562 AATTTCCAGC
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:105826465 original size:40 final size:39
Alignment explanation
Indices: 105826420--105826584 Score: 165
Period size: 40 Copynumber: 4.2 Consensus size: 39
105826410 CGGAATATAA
105826420 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
105826460 CCGGATAGAATCTC-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
* ** * *
105826498 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * *
105826538 CCGGATATAATTTC-CAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAA--TCACTGCACAAATGCCTTCGGGTCTTAGC
105826577 CCGGATAT
1 CCGGATAT
105826585 CATTCAATTT
Statistics
Matches: 103, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
38 32 0.31
39 13 0.13
40 56 0.54
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:105828635 original size:40 final size:39
Alignment explanation
Indices: 105828591--105828814 Score: 281
Period size: 40 Copynumber: 5.7 Consensus size: 39
105828581 GCCACTAGCT
*
105828591 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
105828631 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
105828670 CAAATGCCTTC-GGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
105828709 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
105828749 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
105828789 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
105828815 TATCATCCGA
Statistics
Matches: 165, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
38 13 0.08
39 49 0.30
40 103 0.62
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:105836506 original size:40 final size:39
Alignment explanation
Indices: 105836462--105836684 Score: 259
Period size: 40 Copynumber: 5.6 Consensus size: 39
105836452 GCCACTAGCT
*
105836462 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
105836502 CAAATTCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* * *
105836541 CAAATGCCTTCGGGACTTAGCTCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * *
105836581 CAAACGCCTTTGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
105836621 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
105836661 CAAATG-CTCTCGGGACTTAGCCCG
1 CAAATGCCT-TCGGGACTTAGCCCG
105836685 ATTATCATCC
Statistics
Matches: 160, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 38 0.24
40 122 0.76
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:105836560 original size:79 final size:80
Alignment explanation
Indices: 105836462--105836646 Score: 264
Period size: 79 Copynumber: 2.3 Consensus size: 80
105836452 GCCACTAGCT
* * * **
105836462 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATTCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
105836527 -TATAATAACTCGCA
66 ATATAATAACTCGCA
* * *
105836541 CAAATGCCTTCGGGACTTAGCTCGGATATAATAGCTCGCACAAACGCCTTTGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
105836606 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
105836621 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
105836647 ATTAGCCACT
Statistics
Matches: 93, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 57 0.61
80 36 0.39
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:105841276 original size:15 final size:15
Alignment explanation
Indices: 105841256--105841307 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
105841246 ACTACGAAAC
105841256 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
105841271 ATTTATATTTGTAATAAAT
1 ATTTAT-TAT-TAAT--AT
*
105841290 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
105841305 ATT
1 ATT
105841308 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 11 0.37
16 2 0.07
17 7 0.23
18 2 0.07
19 8 0.27
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:105841428 original size:22 final size:22
Alignment explanation
Indices: 105841384--105841443 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
105841374 TTAAAATAAA
* *
105841384 ATTAAAATATTAA-ATA-ATTT
1 ATTAAAATAATAATTTATATTT
105841404 ATTAAAATAATAATTTATATTT
1 ATTAAAATAATAATTTATATTT
* *
105841426 ATTATATTAATAATTTAT
1 ATTAAAATAATAATTTAT
105841444 TATAAAGAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.35
21 2 0.06
22 20 0.59
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTAAAATAATAATTTATATTT
Found at i:105845325 original size:42 final size:42
Alignment explanation
Indices: 105845279--105845363 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
105845269 CATGCCCCTC
*
105845279 TTCTAGGCCGTGTGGCACACACGGCTGAGACACACGCCCGTG
1 TTCTAGGCCGTGTGGCACACACAGCTGAGACACACGCCCGTG
* *
105845321 TTCTAGGCCGTGTGGCACACACAGCTGAGACACATGCCTGTG
1 TTCTAGGCCGTGTGGCACACACAGCTGAGACACACGCCCGTG
105845363 T
1 T
105845364 CTCTGCCCGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (42 bp):
TTCTAGGCCGTGTGGCACACACAGCTGAGACACACGCCCGTG
Found at i:105845374 original size:42 final size:42
Alignment explanation
Indices: 105845279--105845375 Score: 133
Period size: 42 Copynumber: 2.3 Consensus size: 42
105845269 CATGCCCCTC
* *
105845279 TTCTAGGCCGTGTGGCACACACGGCTGAGACACACGCCCGTG
1 TTCTAGCCCGTGTGGCACACACAGCTGAGACACACGCCCGTG
* * *
105845321 TTCTAGGCCGTGTGGCACACACAGCTGAGACACATGCCTGTG
1 TTCTAGCCCGTGTGGCACACACAGCTGAGACACACGCCCGTG
105845363 TCTCT-GCCCGTGT
1 T-TCTAGCCCGTGT
105845376 ACTCAATTCT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 47 0.94
43 3 0.06
ACGTcount: A:0.18, C:0.32, G:0.29, T:0.22
Consensus pattern (42 bp):
TTCTAGCCCGTGTGGCACACACAGCTGAGACACACGCCCGTG
Found at i:105846082 original size:18 final size:18
Alignment explanation
Indices: 105846059--105846112 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
105846049 CCACCAGCAA
105846059 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
105846077 CT-C-C-A-CCAC-C-TA
1 CTCCACTAGCCACACTTG
105846089 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
105846107 CTCCAC
1 CTCCAC
105846113 CACCTACTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 3 0.11
13 2 0.07
14 5 0.18
15 2 0.07
16 5 0.18
17 2 0.07
18 9 0.32
ACGTcount: A:0.22, C:0.50, G:0.07, T:0.20
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:105846083 original size:30 final size:30
Alignment explanation
Indices: 105846049--105846146 Score: 169
Period size: 30 Copynumber: 3.3 Consensus size: 30
105846039 CTAGCCTTTA
* *
105846049 CCACCAGCAACTCCACTAGCCACACTTGCT
1 CCACCACCTACTCCACTAGCCACACTTGCT
105846079 CCACCACCTACTCCACTAGCCACACTTGCT
1 CCACCACCTACTCCACTAGCCACACTTGCT
*
105846109 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCTACTCCACTAGCCACACTTGCT
105846139 CCACCACC
1 CCACCACC
105846147 ACTTGTACCT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 65 1.00
ACGTcount: A:0.24, C:0.50, G:0.07, T:0.18
Consensus pattern (30 bp):
CCACCACCTACTCCACTAGCCACACTTGCT
Found at i:105846677 original size:22 final size:24
Alignment explanation
Indices: 105846628--105846673 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
105846618 TTTTTTTCGT
105846628 TATTATTATATT-TTTTAATATTA
1 TATTATTATATTCTTTTAATATTA
105846651 TATTATATATATTCTTTTAATAT
1 TATTAT-TATATTCTTTTAATAT
105846674 ATTAGGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.29
24 6 0.29
25 9 0.43
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (24 bp):
TATTATTATATTCTTTTAATATTA
Found at i:105846735 original size:27 final size:25
Alignment explanation
Indices: 105846707--105846767 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
105846697 ATTACGTATA
*
105846707 TATATATATATT-ATACTATTTTATG
1 TATATATAT-TTAATACTATATTATG
* *
105846732 TATATATCTTTAATACTATATTATT
1 TATATATATTTAATACTATATTATG
105846757 TATATATATTT
1 TATATATATTT
105846768 TTTTCTACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 2 0.06
25 29 0.94
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (25 bp):
TATATATATTTAATACTATATTATG
Found at i:105846835 original size:25 final size:24
Alignment explanation
Indices: 105846785--105846847 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
105846775 CATGTTATCT
*
105846785 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
105846811 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-ACTATATTATG
**
105846836 TACATATTTTTT
1 TATGTATTTTTT
105846848 TTATATCTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:105846885 original size:79 final size:78
Alignment explanation
Indices: 105846706--105846885 Score: 186
Period size: 79 Copynumber: 2.3 Consensus size: 78
105846696 TATTACGTAT
* * * * *
105846706 ATATATATATATTATACTATTTTATGTATATATCTTTAATACTATATTATTTATATATATTTTTT
1 ATATGTATATATTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATATTTTTT
*
105846771 TCTACATGTTATC
66 TATACATGTTATC
* * * * * *
105846784 TTATGTATATATTTTAATTATATTATGTATGTATTTTTTACACTATATTATGTACATAT-TTTTT
1 ATATGTATATATTAT-ACTATATTATGTATATATCTTTAACACTATATTATGTACATATATTTTT
105846848 TTATATCTAT-TTCATAC
65 TTATA-C-ATGTT-AT-C
105846865 ATATGTATATATTATA-TATAT
1 ATATGTATATATTATACTATAT
105846886 CTTAACATTA
Statistics
Matches: 83, Mismatches: 14, Indels: 9
0.78 0.13 0.08
Matches are distributed among these distances:
78 21 0.25
79 43 0.52
80 5 0.06
81 14 0.17
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.57
Consensus pattern (78 bp):
ATATGTATATATTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATATTTTTT
TATACATGTTATC
Found at i:105846937 original size:25 final size:24
Alignment explanation
Indices: 105846909--105846964 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
105846899 GTTATATTTT
*
105846909 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
105846934 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
105846957 CACTATTA
1 CACTATTA
105846965 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:105849185 original size:40 final size:40
Alignment explanation
Indices: 105849057--105849225 Score: 157
Period size: 40 Copynumber: 4.2 Consensus size: 40
105849047 CCTTCGGAGT
** *
105849057 TTAA-CCGGATATAGCT-ACTCGTTCAAATGTCTTCGGGAC
1 TTAACCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
* * *
105849096 ATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
105849136 TTAACCCGGATTTAGTAACTCGCACAAATGCCTTC-GGATC
1 TTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-C
** * * * *
105849176 TTAGTCCGGATATAGTCACTTAGAACGAA-GCCTTCGGGAC
1 TTAACCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGAC
*
105849216 TTAGCCCGGA
1 TTAACCCGGA
105849226 CATCATTCGA
Statistics
Matches: 107, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
39 6 0.06
40 92 0.86
41 9 0.08
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:105853047 original size:40 final size:40
Alignment explanation
Indices: 105852981--105853147 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
105852971 AAATTGAATG
* * * *
105852981 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* ***
105853020 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* * *
105853060 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCAAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * *
105853100 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTAATT
105853140 ATATCCGG
1 ATATCCGG
105853148 TTATATTCCG
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 86 0.82
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:105860264 original size:40 final size:40
Alignment explanation
Indices: 105860136--105860304 Score: 139
Period size: 40 Copynumber: 4.2 Consensus size: 40
105860126 CCTTCGGAGT
** * *
105860136 TTAA-CCGGATATAGCT-ACTCGTTCAAATGTCTTTGGGAC
1 TTAACCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
* * *
105860175 ATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
105860215 TTAACCCGGATTTAGTATCTCGCACAAATGCCTTC-GGATC
1 TTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-C
** * * * *
105860255 TTAGTCCGGATATAGTCACTTAGCACGAA-GCTTTCGGGAC
1 TTAACCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGAC
*
105860295 TTAGCCCGGA
1 TTAACCCGGA
105860305 CATCATTTGA
Statistics
Matches: 104, Mismatches: 21, Indels: 9
0.78 0.16 0.07
Matches are distributed among these distances:
39 6 0.06
40 88 0.85
41 10 0.10
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (40 bp):
TTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:105869767 original size:40 final size:40
Alignment explanation
Indices: 105869708--105869885 Score: 279
Period size: 40 Copynumber: 4.5 Consensus size: 40
105869698 CGGATGATAA
105869708 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
105869748 CCGGGCTAAGTCCCTAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
105869788 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
105869828 CCGAGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
105869868 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
105869886 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 16 0.12
40 112 0.88
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:105876804 original size:13 final size:13
Alignment explanation
Indices: 105876762--105876804 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
105876752 CGCCGAGGTA
105876762 TTTTTAATTT-T-
1 TTTTTAATTTCTG
105876773 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
*
105876787 CTTTTAATTTCTG
1 TTTTTAATTTCTG
105876800 TTTTT
1 TTTTT
105876805 CAAAAATCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 5 0.19
12 5 0.19
13 13 0.48
14 4 0.15
ACGTcount: A:0.14, C:0.09, G:0.05, T:0.72
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:105876849 original size:98 final size:99
Alignment explanation
Indices: 105876674--105877067 Score: 449
Period size: 98 Copynumber: 4.1 Consensus size: 99
105876664 CGCTGAGGTA
** *
105876674 TTTTCAATTTCTGTTTTTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCT
1 TTTTCAATTTCTGCCTTTT-AATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * *
105876739 GAGCCTCGGGGCACGCCGAGGTATTTTTAATTTTT
65 GAGCCTCAGGACACGCTGAGGTATTTTCAATTTTT
* *
105876774 TTTTCAATTTCTG-CTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTCAATTTCTGCCTTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
105876838 AGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGT
66 AGCCTCAGGACACGCTGAGGTATTTTCAATTT-T-T
* ** * *
105876874 TTTTCAATTTTTGCCTTACAAATTCT-CTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTCAATTTCTGCCTTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
105876936 AGCCTCAGGACACGCTGAGGTATTTTCAA-----
66 AGCCTCAGGACACGCTGAGGTATTTTCAATTTTT
* ** *
105876965 TTTTC-A-TT-T---TTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTT
1 TTTTCAATTTCTGCCTTTTAATTTATGCTT-TTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
105877024 GAGCCTCAGGACACGCTGAGGTAATTTCAATTTTT
65 GAGCCTCAGGACACGCTGAGGTATTTTCAATTTTT
105877059 GTTTGTCAA
1 -TTT-TCAA
105877068 AACTCAACTC
Statistics
Matches: 257, Mismatches: 22, Indels: 33
0.82 0.07 0.11
Matches are distributed among these distances:
85 7 0.03
86 2 0.01
87 1 0.00
88 1 0.00
89 59 0.23
90 1 0.00
91 5 0.02
95 3 0.01
96 2 0.01
97 1 0.00
98 130 0.51
99 5 0.02
100 31 0.12
101 9 0.04
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (99 bp):
TTTTCAATTTCTGCCTTTTAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
AGCCTCAGGACACGCTGAGGTATTTTCAATTTTT
Found at i:105877094 original size:73 final size:73
Alignment explanation
Indices: 105876993--105877576 Score: 759
Period size: 73 Copynumber: 7.9 Consensus size: 73
105876983 ATGTTTCTAA
* * * *
105876993 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
105877058 TGTTTGTC
66 TGTTTGTC
* * *
105877066 AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
*
105877131 TGTTTTTC
66 TGTTTGTC
* * *
105877139 AAAAAAATCAACTCATATTGCGATAGG-GAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATT
*
105877203 TTTGTTTGTC
64 TCTGTTTGTC
*
105877213 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
*
105877278 TGTCTT-TAAA
66 TGT-TTGT--C
* * *
105877288 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
*
105877353 TGTTTTTC
66 TGTTTGTC
* * *
105877361 AAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATT
*
105877424 TTTGTTTGTC
64 TCTGTTTGTC
* *
105877434 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
105877499 TGTCTT-TC
66 TGT-TTGTC
* * * * *
105877507 AAAAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTGTTTTCCAT
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAAT
105877570 TTCTGTT
63 TTCTGTT
105877577 CTTCAATTTC
Statistics
Matches: 452, Mismatches: 44, Indels: 30
0.86 0.08 0.06
Matches are distributed among these distances:
71 38 0.08
72 24 0.05
73 155 0.34
74 70 0.15
75 128 0.28
76 37 0.08
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
TGTTTGTC
Found at i:105877172 original size:147 final size:146
Alignment explanation
Indices: 105876973--105877582 Score: 773
Period size: 147 Copynumber: 4.1 Consensus size: 146
105876963 AATTTTCATT
* * * * *
105876973 TTTTTAATTTATGTTTCT-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAG-AGGGAGTTGAGCCTCAAGACA
* * *
105877037 CGCTGAGGTAATTTCAATTTTTGTTTGTC-AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGC
65 CGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAAC
*
105877101 CTCAAGACACGTTGAGGTA
130 CTCAAG--ACGCTGAGGTA
* *
105877120 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGGAGTTGAGCCTCAAGACAC
* * *
105877185 GCTGAGGTAATTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
66 GCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAACC
*
105877249 TCAAGACACGTTGAGGTA
131 TCAAG--ACGCTGAGGTA
* * * *
105877267 TTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGG-GAGTTGAGCCTCAAGACA
* * * * *
105877332 CGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAA
65 CGCTGAGGTAATTTCAATTTCTGTTTGTC-AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAA
105877397 CCTCAAGACGCTGAGGTA
129 CCTCAAGACGCTGAGGTA
* * * *
105877415 ATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAG-GGAGTTGAGCCTCAAGACA
* * *
105877478 CGTTGAGGTATTTTCAATTTCTGTCTT-TCAAAAAAAATCAGCTCATATTGCAAGAGGTGAGTTG
65 CGCTGAGGTAATTTCAATTTCTGT-TTGTC--AAAAAATCAACTCATATTGCAAGAGGTGAGTTG
*
105877542 AACCTCAAGACGCTGAGGTG
127 AACCTCAAGACGCTGAGGTA
* *
105877562 TTTTCCATTTCTGTTCTTCAA
1 TTTTCAATTTCTGTTTTTCAA
105877583 TTTCTGTGTT
Statistics
Matches: 417, Mismatches: 37, Indels: 16
0.89 0.08 0.03
Matches are distributed among these distances:
146 66 0.16
147 224 0.54
148 88 0.21
150 39 0.09
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (146 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGGAGTTGAGCCTCAAGACAC
GCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAACC
TCAAGACGCTGAGGTA
Found at i:105877377 original size:222 final size:221
Alignment explanation
Indices: 105876993--105877582 Score: 949
Period size: 222 Copynumber: 2.7 Consensus size: 221
105876983 ATGTTTCTAA
* * * * *
105876993 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
* * * *
105877058 TGT-TTGT--CAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
66 TGTCTT-TAAAAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTA
*
105877120 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGG-GAGTTGAGCCTCAGGACA
130 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCA--ACA
105877184 CGCTGAGGTAATTTCAATTTTTGTTTGTC
193 CGCTGAGGTAATTTCAATTTTTGTTTGTC
105877213 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
*
105877278 TGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTAT
66 TGTCTTTAAAAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTAT
*
105877343 TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACGC
131 TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAACACGC
105877408 TGAGGTAATTTCAATTTTTGTTTGTC
196 TGAGGTAATTTCAATTTTTGTTTGTC
*
105877434 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
* *
105877499 TGTCTTTCAAAAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTG
66 TGTCTTT-AAAAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTA
* *
105877562 TTTTCCATTTCTGTTCTTCAA
130 TTTTCAATTTCTGTTTTTCAA
105877583 TTTCTGTGTT
Statistics
Matches: 347, Mismatches: 18, Indels: 10
0.93 0.05 0.03
Matches are distributed among these distances:
220 92 0.27
221 104 0.30
222 139 0.40
223 12 0.03
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (221 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
TGTCTTTAAAAAAAATCAGCTCATATTGCAAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTAT
TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAACACGC
TGAGGTAATTTCAATTTTTGTTTGTC
Found at i:105877690 original size:15 final size:14
Alignment explanation
Indices: 105877654--105877686 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
105877644 CGCTGAGGTA
105877654 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
105877668 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
105877682 TTTTC
1 TTTTC
105877687 CAAAAATCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:105877716 original size:90 final size:91
Alignment explanation
Indices: 105877551--105878073 Score: 398
Period size: 90 Copynumber: 5.8 Consensus size: 91
105877541 GAACCTCAAG
* * * * * * *
105877551 ACGCTGAGGTGTTTTCCATTTCTGTTCTTC-AATTTCTGTGTTTCAAAAAAAATCAGCTCATATT
1 ACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTATGTTTTTC--AAAAAATCAACTCATATT
*
105877615 GCGAGTGGTGAGTTGAGCCTTGACTCAC
64 GCGAGAGGTGAGTTGAGCCTTGACTCAC
*
105877643 ACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTT-TGTTTTTCCAAAAATCAACTCATATTGC
1 ACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTATGTTTTTCAAAAAATCAACTCATATTGC
* **
105877707 GAGAGGTGAGTTCAGCC-T--CAGAC
66 GAGAGGTGAGTTGAGCCTTGACTCAC
* * * *
105877730 ACGCTGAGATATTTTCAATTTCTTTTTTTTTC-AATTTATGTTTGTCAAAAAAATCAACTCATAT
1 ACGCTGAGGTATTTTCAAATTC--TGTTTTTCAAATTTATGTTTTTC-AAAAAATCAACTCATAT
*
105877794 TGCGAGAGGTGAGTTGAGCCTCAGA-TCAC
63 TGCGAGAGGTGAGTTGAGCCT-TGACTCAC
* * * * * *
105877823 ACGCCGAGGTATTTTCAATTGATTTTTATTTTTTTATTTTCAATTTATGCTTTGC--AAAATCAA
1 ACGCTGAGGTATTTTCAA---A-TTCT-GTTTTTCA-----AATTTATGTTTTTCAAAAAATCAA
* * **
105877886 CTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCAC
56 CTCATATTGCGAGAGGTGAGTTGAGCCTTGACTCAC
** * *
105877922 ATAC-GAGGTATTTTCAAAATCTGTTTTACAAATTT-TG-TTTT--AAAAATCAACTCATATTGC
1 ACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTATGTTTTTCAAAAAATCAACTCATATTGC
* *
105877982 GAGAAGTGAGTTGAGCCTTGGCTCAC
66 GAGAGGTGAGTTGAGCCTTGACTCAC
** * * * * * *
105878008 GTGCTGAGCTATTTTCAATTTCTGTTTTT-AATGTTTA-G-TTTT-AAAGAGTCAATTCATATTG
1 ACGCTGAGGTATTTTCAAATTCTGTTTTTCAA-ATTTATGTTTTTCAAAAAATCAACTCATATTG
105878069 CGAGA
65 CGAGA
105878074 AATGAGTTAA
Statistics
Matches: 352, Mismatches: 53, Indels: 56
0.76 0.11 0.12
Matches are distributed among these distances:
86 47 0.13
87 53 0.15
88 30 0.09
89 15 0.04
90 68 0.19
92 33 0.09
93 28 0.08
94 2 0.01
95 2 0.01
96 6 0.02
97 2 0.01
98 14 0.04
99 41 0.12
102 11 0.03
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (91 bp):
ACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTATGTTTTTCAAAAAATCAACTCATATTGC
GAGAGGTGAGTTGAGCCTTGACTCAC
Found at i:105877798 original size:180 final size:178
Alignment explanation
Indices: 105877510--105877840 Score: 461
Period size: 180 Copynumber: 1.8 Consensus size: 178
105877500 GTCTTTCAAA
* * * * * *
105877510 AAAAATCAGCTCATATTGCAAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCATTTCTG
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTCAACCTCAACACGCTGAGATATTTTCAATTTCTG
* * * *
105877575 TTCTTCAATTTCTGTGTTTCAAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCT-TGAC
66 TTCTTCAATTTATGTGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA-
*
105877639 TCACACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCC
130 TCACACGCCGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCC
* *
105877688 AAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGACACGCTGAGATATTTTCAATTTCT
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTCAACCTCA-ACACGCTGAGATATTTTCAATTTC-
* *
105877753 TTTTTTTTCAATTTATGT-TTGTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
64 -TGTTCTTCAATTTATGTGTT-TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
105877816 AGATCACACGCCGAGGTATTTTCAA
127 AGATCACACGCCGAGGTATTTTCAA
105877841 TTGATTTTTA
Statistics
Matches: 133, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
178 35 0.26
179 20 0.15
180 60 0.45
181 18 0.14
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (178 bp):
AAAAATCAACTCATATTGCAAGAGGTGAGTTCAACCTCAACACGCTGAGATATTTTCAATTTCTG
TTCTTCAATTTATGTGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAT
CACACGCCGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCC
Found at i:105877893 original size:99 final size:98
Alignment explanation
Indices: 105877752--105877938 Score: 270
Period size: 99 Copynumber: 1.9 Consensus size: 98
105877742 TTTCAATTTC
*
105877752 TTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
1 TTTTTTTTTCAATTTATGTTTGTC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCA
*
105877817 GATCACACGCCGAGGTATTTTCAATTGATTTTTATT
64 GATCACA-GACGAGGTATTTTCAATTGATTTTTATT
*
105877853 TTTTTATTTTCAATTTATGCTTTG-C-AAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCG
1 TTTTT-TTTTCAATTTATG-TTTGTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCA
* *
105877916 GGTCACATACGAGGTATTTTCAA
64 GATCACAGACGAGGTATTTTCAA
105877939 AATCTGTTTT
Statistics
Matches: 79, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
98 14 0.18
99 42 0.53
101 5 0.06
102 14 0.18
103 4 0.05
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.39
Consensus pattern (98 bp):
TTTTTTTTTCAATTTATGTTTGTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGA
TCACAGACGAGGTATTTTCAATTGATTTTTATT
Found at i:105878081 original size:88 final size:85
Alignment explanation
Indices: 105877878--105878081 Score: 239
Period size: 86 Copynumber: 2.4 Consensus size: 85
105877868 TATGCTTTGC
* * * *
105877878 AAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATACGAGGTATTTTCAAAATC
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATACGAGCTATTTTCAAAATC
105877943 TGTTTTACAAATTTTGTTTTA
66 TGTTTTA-AAATTTTGTTTTA
* * * **
105877964 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATAC-GAGCTATTTTCAAAAT
*
105878029 CTGTTTT-TAATGTTTAGTTTTA
65 CTGTTTTAAAAT-TTT-GTTTTA
* * *
105878051 AAGAGTCAATTCATATTGCGAGAAATGAGTT
1 AA-AATCAACTCATATTGCGAGAAGTGAGTT
105878082 AAGCTCAGGA
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
85 3 0.03
86 45 0.45
87 28 0.28
88 25 0.25
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (85 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATACGAGCTATTTTCAAAATC
TGTTTTAAAATTTTGTTTTA
Found at i:105878750 original size:30 final size:30
Alignment explanation
Indices: 105878714--105878869 Score: 264
Period size: 30 Copynumber: 5.3 Consensus size: 30
105878704 CTAGCCTTTG
105878714 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
105878744 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
105878774 ---CCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
105878801 CCACCACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
105878831 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
105878861 CCACCACCA
1 CCACCACCA
105878870 CTTGTACCTA
Statistics
Matches: 120, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
27 27 0.22
30 93 0.77
ACGTcount: A:0.26, C:0.50, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:105878778 original size:57 final size:57
Alignment explanation
Indices: 105878717--105878869 Score: 261
Period size: 57 Copynumber: 2.6 Consensus size: 57
105878707 GCCTTTGCCA
105878717 CCACCAACTCCACTAGCCACACTTGCTCCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCAACTCCACTAGCCACACTTGCTCCACCACCAACTCCACTAGCCACACTTGCT
*
105878774 CCACCAACTCCACTAGCCACACTTGCTCCACCACCTACTCCACTAGCCACACTTGCT
1 CCACCAACTCCACTAGCCACACTTGCTCCACCACCAACTCCACTAGCCACACTTGCT
*
105878831 CCACCACCTACTCCATTAGCCACACTTGCTCCACCACCA
1 CCACCA---ACTCCACTAGCCACACTTGCTCCACCACCA
105878870 CTTGTACCTA
Statistics
Matches: 90, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
57 62 0.69
60 28 0.31
ACGTcount: A:0.25, C:0.50, G:0.07, T:0.18
Consensus pattern (57 bp):
CCACCAACTCCACTAGCCACACTTGCTCCACCACCAACTCCACTAGCCACACTTGCT
Found at i:105879383 original size:22 final size:22
Alignment explanation
Indices: 105879339--105879396 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
105879329 TTTTTTTTGT
*
105879339 TATTATTATATT-TTTATATTA
1 TATTATTATATTCTTTATAATA
105879360 TATTATATATATTCTTT-TAATA
1 TATTAT-TATATTCTTTATAATA
*
105879382 TATTAGGTATATTCT
1 TATTA-TTATATTCT
105879397 AAATTCTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 6 0.19
22 23 0.72
23 3 0.09
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (22 bp):
TATTATTATATTCTTTATAATA
Found at i:105879442 original size:27 final size:25
Alignment explanation
Indices: 105879402--105879468 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
105879392 ATTCTAAATT
*
105879402 CTATATTACGTATATATATATT-ATA
1 CTATATTATGTATATATAT-TTAATA
* *
105879427 CTATTTTATGTATATATCTTTAATA
1 CTATATTATGTATATATATTTAATA
*
105879452 CTATATTATTTATATAT
1 CTATATTATGTATATAT
105879469 TTTTTTTCTA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
24 2 0.06
25 34 0.94
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (25 bp):
CTATATTATGTATATATATTTAATA
Found at i:105879507 original size:21 final size:22
Alignment explanation
Indices: 105879483--105879547 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 22
105879473 TTTCTACATG
*
105879483 TTATCTTATG-ATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
105879504 TTATATTATGTATGTATTTTTACA
1 TTATATTATGTATATA-TTTTA-A
* *
105879528 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
105879548 TTTTATATCT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 9 0.25
22 4 0.11
23 9 0.25
24 14 0.39
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:105879585 original size:76 final size:75
Alignment explanation
Indices: 105879415--105879585 Score: 168
Period size: 76 Copynumber: 2.2 Consensus size: 75
105879405 TATTACGTAT
* * * *
105879415 ATATATATTATACTATTTTATGTATATATCTTTAATACTATATTATTTATATATTTTTTTTCTAC
1 ATATATATTATA-TA--TTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTTATAC
*
105879480 ATGTTATCTTATG
63 ATGTTATCATATG
* * *
105879493 ATATATTTTAATTATATTATGTATGTAT-TTTTACACTATATTATGTACATATTTTTTTTATATC
1 ATATATATT-A-TATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTTATA-C
105879557 TAT-TTCATACATATG
63 -ATGTT-AT-CATATG
105879572 -TATATATTATATAT
1 ATATATATTATATAT
105879586 ATCTTAACAT
Statistics
Matches: 78, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
76 34 0.44
77 15 0.19
78 19 0.24
79 8 0.10
80 2 0.03
ACGTcount: A:0.32, C:0.07, G:0.04, T:0.57
Consensus pattern (75 bp):
ATATATATTATATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTTATACATG
TTATCATATG
Found at i:105879639 original size:25 final size:24
Alignment explanation
Indices: 105879611--105879666 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
105879601 GTTATATTTT
*
105879611 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
105879636 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
105879659 CACTATTA
1 CACTATTA
105879667 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:105881740 original size:20 final size:21
Alignment explanation
Indices: 105881711--105881752 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
105881701 AGCACATGTA
105881711 TTCATAAAATTTCA-AAATTT
1 TTCATAAAATTTCACAAATTT
* *
105881731 TTCATCAAATTTTACAAATTT
1 TTCATAAAATTTCACAAATTT
105881752 T
1 T
105881753 CATTTTAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (21 bp):
TTCATAAAATTTCACAAATTT
Found at i:105886887 original size:93 final size:93
Alignment explanation
Indices: 105886775--105886946 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
105886765 GCCCATAAGT
* *
105886775 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105886840 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
105886868 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105886933 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
105886947 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:105886942 original size:46 final size:46
Alignment explanation
Indices: 105886767--105886942 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
105886757 TGTAACCCGC
* * *
105886767 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
105886813 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
105886863 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
105886906 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
105886943 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:105888440 original size:29 final size:29
Alignment explanation
Indices: 105888408--105888508 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
105888398 ATAGTGAATC
*
105888408 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAACT
*
105888437 CGCACACTTAGTGCTATATA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AACT
* * * *
105888465 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAACT
105888495 CGCACACTTAGTGC
1 CGCACACTTAGTGC
105888509 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 20 0.33
29 21 0.34
30 17 0.28
31 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAACT
Found at i:105888501 original size:30 final size:29
Alignment explanation
Indices: 105888407--105888508 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
105888397 TATAGTGAAT
* * *
105888407 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
105888436 TCGCACACTTAGTGCTATATAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
105888464 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
105888494 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
105888509 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:105896365 original size:29 final size:29
Alignment explanation
Indices: 105896333--105896433 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
105896323 ATAGTGAATC
*
105896333 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAACT
*
105896362 CGCACACTTAGTGCTATATA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AACT
* * * *
105896390 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAACT
105896420 CGCACACTTAGTGC
1 CGCACACTTAGTGC
105896434 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 20 0.33
29 21 0.34
30 17 0.28
31 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAACT
Found at i:105896426 original size:30 final size:29
Alignment explanation
Indices: 105896332--105896433 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
105896322 TATAGTGAAT
* * *
105896332 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
105896361 TCGCACACTTAGTGCTATATAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
105896389 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
105896419 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
105896434 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:105900421 original size:15 final size:15
Alignment explanation
Indices: 105900373--105900452 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
105900363 CAAAGATAAC
*
105900373 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
105900387 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
105900402 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
105900417 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
105900432 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
105900447 AAGAAA
1 AAGAAA
105900453 CCAAGATACG
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:105903488 original size:93 final size:93
Alignment explanation
Indices: 105903376--105903547 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
105903366 GCCCATAAGT
* *
105903376 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105903441 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
105903469 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105903534 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
105903548 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:105903543 original size:46 final size:46
Alignment explanation
Indices: 105903368--105903543 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
105903358 TGTAACCCGC
* * *
105903368 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
105903414 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
105903464 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
105903507 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
105903544 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:105913611 original size:71 final size:72
Alignment explanation
Indices: 105913529--105913690 Score: 229
Period size: 71 Copynumber: 2.3 Consensus size: 72
105913519 CATCATGTGT
* * * *
105913529 ACAAGAAAGCTACGAGACACCCTATA-GTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
105913593 CATGTAG
66 CATGTAG
* * * *
105913600 ACAAGAGAGCTACGTGA-AAGATAAATGTAGCTAGGTCGCATGCGTGATTCCCAGTGAAGGACAC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
*
105913664 CGTGTAG
66 CATGTAG
105913671 ACAAGAGAGCTACGAGACAA
1 ACAAGAGAGCTACGAGACAA
105913691 ATCGGTTAGG
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
70 4 0.05
71 73 0.92
72 2 0.03
ACGTcount: A:0.36, C:0.20, G:0.27, T:0.17
Consensus pattern (72 bp):
ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
CATGTAG
Found at i:105916662 original size:33 final size:33
Alignment explanation
Indices: 105916610--105916675 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
105916600 AACCAAAGAA
* *
105916610 AACAGAATTAGATCGTGGAAAGTCAAAAGTAGT
1 AACAAAATTAGATCATGGAAAGTCAAAAGTAGT
105916643 AACAAAATTAGATCATGGAAAGTCAAAAGTAGT
1 AACAAAATTAGATCATGGAAAGTCAAAAGTAGT
105916676 TGAATAGCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.48, C:0.09, G:0.21, T:0.21
Consensus pattern (33 bp):
AACAAAATTAGATCATGGAAAGTCAAAAGTAGT
Found at i:105917968 original size:64 final size:64
Alignment explanation
Indices: 105917867--105917996 Score: 251
Period size: 64 Copynumber: 2.0 Consensus size: 64
105917857 AATTTGTGTA
*
105917867 TTTTGGTGTTTTATGATAGAATATGAGGTTTTAAATTATGTTAGACAACTTGTGCTACTCGGTT
1 TTTTGGTGTTTTATGATAGAATATGAGGTTTTAAATTATGTTAGACAACTTGTGCTACTCAGTT
105917931 TTTTGGTGTTTTATGATAGAATATGAGGTTTTAAATTATGTTAGACAACTTGTGCTACTCAGTT
1 TTTTGGTGTTTTATGATAGAATATGAGGTTTTAAATTATGTTAGACAACTTGTGCTACTCAGTT
105917995 TT
1 TT
105917997 AAGTGAAAAC
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.25, C:0.08, G:0.21, T:0.46
Consensus pattern (64 bp):
TTTTGGTGTTTTATGATAGAATATGAGGTTTTAAATTATGTTAGACAACTTGTGCTACTCAGTT
Found at i:105929883 original size:2 final size:2
Alignment explanation
Indices: 105929876--105929903 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
105929866 AAATGGCATA
105929876 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
105929904 GTGTGTGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:105930561 original size:40 final size:40
Alignment explanation
Indices: 105930500--105930722 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
105930490 TATTCGGATG
*
105930500 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
105930540 ATATCCGGGCTGAGCCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* *
105930583 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
105930623 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
105930663 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
105930703 ATAT-C-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
105930723 ATACTTGGGT
Statistics
Matches: 161, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
38 13 0.08
39 1 0.01
40 110 0.68
41 1 0.01
43 36 0.22
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:105930642 original size:83 final size:80
Alignment explanation
Indices: 105930500--105930722 Score: 283
Period size: 83 Copynumber: 2.8 Consensus size: 80
105930490 TATTCGGATG
* * * *
105930500 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTGAGCCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
**
105930565 TTTGTGCGAGTAGTTG-CT
66 TTCATGC---TAG-TGACT
*
105930583 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
105930648 TTCATGCTAGTGACT
66 TTCATGCTAGTGACT
* * *
105930663 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT-C-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
105930723 ATACTTGGGT
Statistics
Matches: 128, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
78 14 0.11
79 3 0.02
80 44 0.34
81 2 0.02
83 65 0.51
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTCATGCTAGTGACT
Found at i:105933241 original size:46 final size:47
Alignment explanation
Indices: 105933139--105933356 Score: 194
Period size: 46 Copynumber: 4.6 Consensus size: 47
105933129 GTATAATGTT
* * * * *
105933139 GATGCGATGTCCCAAATATGATCTTACACTGACTTTAACATATCTG-TGCC
1 GATGC-ATGTCCCAGACATG-TCTTACACTGGCTCT-ACATATC-GAGGCC
*
105933189 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTACATATCGAGGCC
* * * * *
105933235 GATGCATGTCCCAGACATGTCTTGCACTAGCTCTA-ATTTCTATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTACATATCGAGGCC
* * *
105933281 GATGCCATGTCTCAAACATGGTCTTACACTGGCTCT-CATAAT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTACAT-ATCGAGGCC
* *
105933329 GATGCATGTGCTAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
105933357 AGCACACAAT
Statistics
Matches: 140, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 61 0.44
47 25 0.18
48 35 0.25
49 13 0.09
50 5 0.04
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTACATATCGAGGCC
Found at i:105933311 original size:94 final size:92
Alignment explanation
Indices: 105933185--105933359 Score: 237
Period size: 94 Copynumber: 1.9 Consensus size: 92
105933175 AACATATCTG
* *
105933185 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACAT-CTCGAGGCCGATGCATGTCCCA
1 TGCCGATGCATGTCCCAAACATGTCTTACACTGGCTCT-CATAAT-GAGGCCGATGCATGTCCCA
*
105933248 GACATGTCTTGCACTAGCTCTAATTTCTA
64 GACATGTCTTACACTAGCTCTAATTTCTA
* * * *
105933277 TGCCGATGCCATGTCTCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTGCTA
1 TGCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCA
105933342 GACATGTCTTACACTAGC
64 GACATGTCTTACACTAGC
105933360 ACACAATTAA
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
92 8 0.11
93 12 0.17
94 50 0.69
95 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (92 bp):
TGCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGA
CATGTCTTACACTAGCTCTAATTTCTA
Found at i:105938930 original size:28 final size:28
Alignment explanation
Indices: 105938861--105938961 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 28
105938851 GACAAGATTG
* * * *
105938861 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
105938891 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
105938919 GCACTAAGTGTGCAAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
105938948 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
105938962 GATTCACTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 3 0.05
28 23 0.37
29 18 0.29
30 18 0.29
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:105952642 original size:40 final size:39
Alignment explanation
Indices: 105952518--105952682 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 39
105952508 CGGAGTTTAA
** * * *
105952518 CCGGATATAGCT-ACTCGTTCAAATGTCTTTGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATG-CCTTCGGACTTAGC
* * *
105952558 CCCGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAGC
* * *
105952598 CCGGATTTTGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGA-CTTAGC
* *
105952638 CCGGATATAGTCACTTAGCACAAA-GCCTTCGAGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCG-GACTTAGC
105952678 CCGGA
1 CCGGA
105952683 CATCATTCGA
Statistics
Matches: 101, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
39 7 0.07
40 84 0.83
41 10 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
Found at i:105962147 original size:49 final size:48
Alignment explanation
Indices: 105962075--105962375 Score: 430
Period size: 47 Copynumber: 6.3 Consensus size: 48
105962065 GTATGAGATA
* *
105962075 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG-GTG
* * *
105962124 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG-GTG
* *
105962173 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGGTG
105962220 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGGTG
*
105962267 TGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGGTG
* * * * *
105962314 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGGTG
*
105962361 TATAAATGTGATAAG
1 TATATATGTGATAAG
105962376 TCCCGAAGGG
Statistics
Matches: 238, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 144 0.61
48 5 0.02
49 89 0.37
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (48 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGGTG
Found at i:105962253 original size:22 final size:22
Alignment explanation
Indices: 105962225--105962300 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
105962215 AGGTGTATAT
105962225 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
105962247 ATGTGATGAATG-TGAAAGTGTG-TA
1 ATGTGAT-AAGGCCG-AA-TG-GCCA
105962271 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
105962294 ATGTGAT
1 ATGTGAT
105962301 GAATGTGAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:105964161 original size:29 final size:29
Alignment explanation
Indices: 105964067--105964139 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
105964057 GTGACGAGAT
105964067 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
105964096 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
105964125 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
105964140 GAGCTCGAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:105964235 original size:2 final size:2
Alignment explanation
Indices: 105964230--105964254 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
105964220 GTGTGCGTAC
105964230 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
105964255 CTCCGATCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:105967579 original size:40 final size:40
Alignment explanation
Indices: 105967512--105967743 Score: 347
Period size: 40 Copynumber: 5.8 Consensus size: 40
105967502 GAGAATTGAG
* * *
105967512 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
**
105967552 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
105967592 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
105967632 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* * * *
105967672 AGTAATGCAACCAGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
105967712 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCA
105967744 ATCATGCTGG
Statistics
Matches: 175, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 175 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:105967960 original size:25 final size:25
Alignment explanation
Indices: 105967919--105967970 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
105967909 TGTGTAATAA
105967919 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
* *
105967944 TGAATG-ATTAGAGGCACTGTGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
105967969 TG
1 TG
105967971 CAAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:105971391 original size:49 final size:49
Alignment explanation
Indices: 105971309--105971496 Score: 225
Period size: 49 Copynumber: 3.8 Consensus size: 49
105971299 TGAGGTCACG
* *
105971309 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * * * ***
105971358 TGTGAAGTACTAAGTGCAGGCTACTATGCGTACCCA-AAAACTGTGATCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTA-CCAGATAA-T-TGGTCGCA
* * *
105971409 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
*
105971458 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
105971497 GCTTCGGCTA
Statistics
Matches: 112, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
49 71 0.63
50 6 0.05
51 35 0.31
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:105971481 original size:100 final size:100
Alignment explanation
Indices: 105971308--105971491 Score: 332
Period size: 100 Copynumber: 1.8 Consensus size: 100
105971298 GTGAGGTCAC
*
105971308 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGAAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGAAGTACTAAGT
105971373 GCAGGCTACTATGCGTACCCAAAAACTGTGATCAT
66 GCAGGCTACTATGCGTACCCAAAAACTGTGATCAT
* * *
105971408 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGAAGTACTAAGT
105971473 GCAGGCTACTATGCGTACC
66 GCAGGCTACTATGCGTACC
105971492 AGATAGCTTC
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 80 1.00
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGAAGTACTAAGT
GCAGGCTACTATGCGTACCCAAAAACTGTGATCAT
Found at i:105980667 original size:49 final size:49
Alignment explanation
Indices: 105980590--105980777 Score: 216
Period size: 49 Copynumber: 3.8 Consensus size: 49
105980580 TAGCCGAAGC
* * *
105980590 TATCTGGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* ** * *
105980639 AATCTGGTACACGTAGTAGCCTAAACTTAGTACTACACACGTGATCACAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * *
105980690 TTTCGGGTACACAG-AGTAGCCTGCACTTAGCACTACACATGCGACCAAT
1 TATCTGGTACAC-GTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * *
105980739 TATCCGGTACACGTAGTAGTCTGTACTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
105980778 CGTGACCTCA
Statistics
Matches: 114, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
48 1 0.01
49 72 0.63
50 2 0.02
51 38 0.33
52 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:105980716 original size:100 final size:101
Alignment explanation
Indices: 105980595--105980791 Score: 297
Period size: 100 Copynumber: 2.0 Consensus size: 101
105980585 GAAGCTATCT
* * * *
105980595 GGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACACAGAGTAGCCTGCACTTAACACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
105980660 TAAACTTAGTACTACACACGTGA-TCACAATTTTCG
66 TAAACTTAGTACTACACACGTGACTCACAATTTTCG
* * *
105980695 GGTACACAGAGTAGCCTGCACTTAGCACTACACATGCGACCAATTATCCGGTACACGTAGTAGTC
1 GGTACACAGAGTAGCCTGCACTTAACACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
**
105980760 TGTACTTAGTACTACACACGTGACCTCACAAT
66 TAAACTTAGTACTACACACGTGA-CTCACAAT
105980792 AGTTCATTTG
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
100 79 0.92
102 7 0.08
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (101 bp):
GGTACACAGAGTAGCCTGCACTTAACACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TAAACTTAGTACTACACACGTGACTCACAATTTTCG
Found at i:105982957 original size:27 final size:27
Alignment explanation
Indices: 105982927--105983069 Score: 146
Period size: 27 Copynumber: 5.3 Consensus size: 27
105982917 TACCGAAATG
* * *
105982927 CCCTCGATTTGTAGAATTGCCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * * *
105982954 CCCTTGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
105982981 CCCTCAATTTATAAAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
*
105983008 CCCTCGATTT-CAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* **
105983034 CCCTC-AGTTTACAAAATTACTGTTTTA
1 CCCTCGA-TTTATAAAATTACCATTTTA
105983061 CCCTCGATT
1 CCCTCGATT
105983070 GTGAAATTAC
Statistics
Matches: 99, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
25 1 0.01
26 22 0.22
27 75 0.76
28 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACCATTTTA
Found at i:105983039 original size:53 final size:54
Alignment explanation
Indices: 105982949--105983069 Score: 165
Period size: 53 Copynumber: 2.3 Consensus size: 54
105982939 AGAATTGCCA
* * *
105982949 TTTTACCCTTGATTTATAGAATTACCGTTTCACCCTCAATTTATAAAATTACCG
1 TTTTACCCTCGATTTATAGAATTACCATTTCACCCTCAATTTACAAAATTACCG
* * *
105983003 TTTTACCCTCGATTTCA-A-AATTACCATTTTACCCTCAGTTTACAAAATTACTG
1 TTTTACCCTCGATTT-ATAGAATTACCATTTCACCCTCAATTTACAAAATTACCG
105983056 TTTTACCCTCGATT
1 TTTTACCCTCGATT
105983070 GTGAAATTAC
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
53 44 0.73
54 15 0.25
55 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (54 bp):
TTTTACCCTCGATTTATAGAATTACCATTTCACCCTCAATTTACAAAATTACCG
Found at i:105983117 original size:27 final size:27
Alignment explanation
Indices: 105983085--105983222 Score: 93
Period size: 27 Copynumber: 5.1 Consensus size: 27
105983075 ATTACTGAAA
*
105983085 ACCCCTA-TAGGATAGAATTACCAAAAT
1 ACCCCTAGTAGG-TAAAATTACCAAAAT
**
105983112 ACCCCTAGTTTGTAAAATTACCAAAAT
1 ACCCCTAGTAGGTAAAATTACCAAAAT
* *
105983139 ACCCCTAGTTA-GTAAAATTACTAATAT
1 ACCCCTAG-TAGGTAAAATTACCAAAAT
* * ** * *
105983166 ACCACTGGTTTGTGAAATTACCGAAAT
1 ACCCCTAGTAGGTAAAATTACCAAAAT
* ** *
105983193 A-CCCTCAATTTGTAAAATTGCCAAAAT
1 ACCCCT-AGTAGGTAAAATTACCAAAAT
105983220 ACC
1 ACC
105983223 TCTGATTTAC
Statistics
Matches: 87, Mismatches: 19, Indels: 9
0.76 0.17 0.08
Matches are distributed among these distances:
26 4 0.05
27 79 0.91
28 4 0.05
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (27 bp):
ACCCCTAGTAGGTAAAATTACCAAAAT
Found at i:105983158 original size:54 final size:54
Alignment explanation
Indices: 105983100--105983222 Score: 149
Period size: 54 Copynumber: 2.3 Consensus size: 54
105983090 TATAGGATAG
* *
105983100 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CTAGTTAGTAA
1 AATTACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCTC-AATTAGTAA
* * * * * *
105983154 AATTACTAATATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCTCAATTAGTAA
*
105983208 AATTGCCAAAATACC
1 AATTACCAAAATACC
105983223 TCTGATTTAC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 56 0.98
55 1 0.02
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (54 bp):
AATTACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCTCAATTAGTAA
Found at i:105983230 original size:27 final size:26
Alignment explanation
Indices: 105983100--105983250 Score: 133
Period size: 27 Copynumber: 5.6 Consensus size: 26
105983090 TATAGGATAG
105983100 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTA-TTTGTAA
*
105983127 AATTACCAAAATACCCCTAGTTAGTAA
1 AATTACCAAAATACCCCTA-TTTGTAA
* * * * *
105983154 AATTACTAATATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCT-ATTTGTAA
* *
105983181 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCC-CTATTTGTAA
* * **
105983208 AATTGCCAAAATACCTCTGATTTACAA
1 AATTACCAAAATACCCCT-ATTTGTAA
105983235 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
105983251 TTGACTTTCT
Statistics
Matches: 98, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
26 3 0.03
27 94 0.96
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCCTATTTGTAA
Found at i:105983249 original size:81 final size:81
Alignment explanation
Indices: 105983100--105983249 Score: 189
Period size: 81 Copynumber: 1.9 Consensus size: 81
105983090 TATAGGATAG
* * *
105983100 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTAGTAAAATTACTAATA
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAGTTAGCAAAATTACTAAAA
105983165 TACCACTGGTTTGTGA
66 TACCACTGGTTTGTGA
* * * *
105983181 AATTACCGAAATA-CCCTCAATTTGTAAAATTGCCAAAATACCTCTGATTTA-CAAAATTAC-AG
1 AATTACCAAAATACCCCT-AATTTGTAAAATTACCAAAATACCCCT-AGTTAGCAAAATTACTA-
105983243 AAATACC
63 AAATACC
105983250 CTTGACTTTC
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
80 5 0.08
81 50 0.85
82 4 0.07
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAGTTAGCAAAATTACTAAAA
TACCACTGGTTTGTGA
Found at i:105983268 original size:29 final size:27
Alignment explanation
Indices: 105983228--105983313 Score: 102
Period size: 27 Copynumber: 3.1 Consensus size: 27
105983218 ATACCTCTGA
*
105983228 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTACAGAAATACCCTTG-G
* *
105983256 TTT-CTAAAAATTATAGAAATACCATTGG
1 TTTAC--AAAATTACAGAAATACCCTTGG
*
105983284 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACAGAAATACCCTTGG
105983311 TTT
1 TTT
105983314 GTAGATTTAC
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
27 23 0.47
28 6 0.12
29 20 0.41
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACAGAAATACCCTTGG
Found at i:105983431 original size:27 final size:27
Alignment explanation
Indices: 105983367--105983431 Score: 62
Period size: 27 Copynumber: 2.4 Consensus size: 27
105983357 ACCCCTAATA
*
105983367 GGTAAAAAGACTGTAAAGCTCCTGTAG
1 GGTAAAATGACTGTAAAGCTCCTGTAG
* * *
105983394 GGTACAGTGACTGTAATA-C-CCTTGTAT
1 GGTAAAATGACTGTAA-AGCTCC-TGTAG
105983421 GGTAAAATGAC
1 GGTAAAATGAC
105983432 AAATATGCCC
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
26 2 0.07
27 27 0.90
28 1 0.03
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACTGTAAAGCTCCTGTAG
Found at i:105984294 original size:25 final size:25
Alignment explanation
Indices: 105984241--105984309 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
105984231 AGGAAGTGCT
* *
105984241 AAAAGGGCTCTGCCCCA-TTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACAG
105984265 AAAAGGGCTTTGCCCCAGTTTATCAG
1 AAAAGGGCTTTGCCCCAGTTTA-CAG
*
105984291 -AAAGGGCTTTGCCTCAGTT
1 AAAAGGGCTTTGCCCCAGTT
105984310 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
24 16 0.40
25 22 0.55
26 2 0.05
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACAG
Found at i:105984322 original size:24 final size:23
Alignment explanation
Indices: 105984241--105984336 Score: 75
Period size: 24 Copynumber: 4.0 Consensus size: 23
105984231 AGGAAGTGCT
* * * *
105984241 AAAAGGGCTCTGCCCCATTTACC
1 AAAAGGGCTTTGCCTCAGTTATC
*
105984264 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCTCAG-TTATC
*
105984289 AGAAAGGGCTTTGCCTCAGTTATT
1 A-AAAGGGCTTTGCCTCAGTTATC
**
105984313 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCCT-CAGTTAT
105984337 ATGATAAAGC
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 4 0.07
24 30 0.49
25 27 0.44
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTTGCCTCAGTTATC
Found at i:105984515 original size:42 final size:42
Alignment explanation
Indices: 105984456--105984589 Score: 232
Period size: 42 Copynumber: 3.2 Consensus size: 42
105984446 TAGTCTCCCC
*
105984456 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
*
105984498 AAATGGGCTTGCATACATCCATTGACATTACATGTGACATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
* *
105984540 AAATGGGCTTGCATACATCCATTAACATTATATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
105984582 AAATGGGC
1 AAATGGGC
105984590 CTAAGGGCCA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 87 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:105984648 original size:31 final size:31
Alignment explanation
Indices: 105984613--105984696 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
105984603 CGTTTACAGT
105984613 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
105984644 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
105984675 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
105984697 TCAAGACTAA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:105987678 original size:40 final size:40
Alignment explanation
Indices: 105987551--105987680 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
105987541 ATGCTGGAAA
* *
105987551 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
105987591 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
105987631 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
105987671 TTATATCCGG
1 TTATATCCGG
105987681 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:105989223 original size:90 final size:90
Alignment explanation
Indices: 105989051--105989229 Score: 315
Period size: 89 Copynumber: 2.0 Consensus size: 90
105989041 AAGTATTAGG
*
105989051 GAGTGCGGGTCCGTCAGGAGGTTGTATATAGGTATTTAATTGTGCAATGAAATAAACAATCAAAT
1 GAGTGCGGGTCCGTAAGGAGGTTGTATATAGGTATTTAATTGTGCAATGAAATAAACAATCAAAT
*
105989116 GTCTTCTTTGGTGGTTAATGGCCTT
66 GTCTGCTTTGGTGGTTAATGGCCTT
*
105989141 GAGTGC-GGTCCGTAAGGAGGTTGTATATAGGTATTTAATTGTGCAATGAAATAACACAATTAAA
1 GAGTGCGGGTCCGTAAGGAGGTTGTATATAGGTATTTAATTGTGCAATGAAATAA-ACAATCAAA
105989205 TGTCTGCTTTGGTGGTTAATGGCCT
65 TGTCTGCTTTGGTGGTTAATGGCCT
105989230 GCGAAGTGTT
Statistics
Matches: 85, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
89 47 0.55
90 38 0.45
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (90 bp):
GAGTGCGGGTCCGTAAGGAGGTTGTATATAGGTATTTAATTGTGCAATGAAATAAACAATCAAAT
GTCTGCTTTGGTGGTTAATGGCCTT
Found at i:105990140 original size:27 final size:27
Alignment explanation
Indices: 105990110--105990226 Score: 137
Period size: 27 Copynumber: 4.3 Consensus size: 27
105990100 TACTGTAATG
** * *
105990110 CCCTCGATTTGTAGAATTGCCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
*
105990137 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
*
105990164 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* **
105990191 CGCTC-AGTTTACAAAATTACTGTTTTA
1 CCCTCGA-TTTACAAAATTACCATTTTA
105990218 CCCTCGATT
1 CCCTCGATT
105990227 GAGAAATTAC
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 1 0.01
27 78 0.98
28 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.10, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:105990172 original size:54 final size:54
Alignment explanation
Indices: 105990110--105990226 Score: 155
Period size: 54 Copynumber: 2.2 Consensus size: 54
105990100 TACTGTAATG
** * *
105990110 CCCTCGATTTGTAGAATTGCCATTTTACCCTC-GATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTACCCTCAG-TTTACAAAATTACCGTTTTA
* * *
105990164 CCCTCGATTTACAAAATTACCGTTTTACGCTCAGTTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTACCGTTTTA
105990218 CCCTCGATT
1 CCCTCGATT
105990227 GAGAAATTAC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 54 0.98
55 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.10, T:0.38
Consensus pattern (54 bp):
CCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTACCGTTTTA
Found at i:105990238 original size:26 final size:27
Alignment explanation
Indices: 105990132--105990226 Score: 156
Period size: 27 Copynumber: 3.5 Consensus size: 27
105990122 AGAATTGCCA
105990132 TTTTACCCTCGATTTACAAAATTACCG
1 TTTTACCCTCGATTTACAAAATTACCG
105990159 TTTTACCCTCGATTTACAAAATTACCG
1 TTTTACCCTCGATTTACAAAATTACCG
* *
105990186 TTTTACGCTC-AGTTTACAAAATTACTG
1 TTTTACCCTCGA-TTTACAAAATTACCG
105990213 TTTTACCCTCGATT
1 TTTTACCCTCGATT
105990227 GAGAAATTAC
Statistics
Matches: 63, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
26 1 0.02
27 61 0.97
28 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAAAATTACCG
Found at i:105990269 original size:27 final size:27
Alignment explanation
Indices: 105990239--105990325 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
105990229 GAAATTACTG
*
105990239 AAATACCCCT-GTAGGATAGAATTACCA
1 AAATACCCCTAGTAGG-TACAATTACCA
* **
105990266 AAATATCCCTAGTTTGTACAATTACCA
1 AAATACCCCTAGTAGGTACAATTACCA
** * *
105990293 AAATACCCCTAGTTTGTAAAATTACCG
1 AAATACCCCTAGTAGGTACAATTACCA
105990320 AAATAC
1 AAATAC
105990326 TATTGGTTTG
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
27 49 0.94
28 3 0.06
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (27 bp):
AAATACCCCTAGTAGGTACAATTACCA
Found at i:105990334 original size:27 final size:27
Alignment explanation
Indices: 105990258--105990366 Score: 105
Period size: 27 Copynumber: 4.0 Consensus size: 27
105990248 TGTAGGATAG
* *
105990258 AATTACCAAAATATCC-CTAGTTTGTAC
1 AATTACCGAAATA-CCACTAGTTTGTAA
* *
105990285 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCGAAATACCACTAGTTTGTAA
* * * *
105990312 AATTACCGAAATACTATTGGTTTGTGA
1 AATTACCGAAATACCACTAGTTTGTAA
*
105990339 AATTATCGAAATACC-CTCAGTTTGTAA
1 AATTACCGAAATACCACT-AGTTTGTAA
105990366 A
1 A
105990367 TGCTAAAATA
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 3 0.04
27 65 0.96
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (27 bp):
AATTACCGAAATACCACTAGTTTGTAA
Found at i:105990512 original size:28 final size:27
Alignment explanation
Indices: 105990463--105990555 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
105990453 AAAATTGCTA
*
105990463 AAATACCCCTGATTTACAAAATTACAG
1 AAATACCCTTGATTTACAAAATTACAG
* *
105990490 AAATACCCTTGACTTTATAAAATTAAAG
1 AAATACCCTTGA-TTTACAAAATTACAG
* * *
105990518 AAATACCATTGGTTTACAAAATTACTG
1 AAATACCCTTGATTTACAAAATTACAG
105990545 AAATACCCTTG
1 AAATACCCTTG
105990556 GTTTGTAGAT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 33 0.59
28 23 0.41
ACGTcount: A:0.43, C:0.18, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATACCCTTGATTTACAAAATTACAG
Found at i:105990643 original size:27 final size:27
Alignment explanation
Indices: 105990600--105990673 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
105990590 AAATGACTAA
*
105990600 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
105990627 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
105990654 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
105990674 TGGAATATGC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:105992328 original size:43 final size:43
Alignment explanation
Indices: 105992262--105992434 Score: 188
Period size: 43 Copynumber: 4.0 Consensus size: 43
105992252 AGCTTGTACA
* * *
105992262 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
* ** * *** *
105992304 ATGCCACTGTCCCAGACAAAGTCTTACATGAAATCGGTTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
* * *
105992347 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT-CG
*
105992390 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATCTCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
105992433 AT
1 AT
105992435 AACCTAATGT
Statistics
Matches: 103, Mismatches: 25, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
42 6 0.06
43 96 0.93
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
Found at i:105992415 original size:86 final size:85
Alignment explanation
Indices: 105992262--105992424 Score: 211
Period size: 86 Copynumber: 1.9 Consensus size: 85
105992252 AGCTTGTACA
* * * * *
105992262 ATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTGTCCCAGACAAAGTC
1 ATGCCATATCCCAGACATGGTCTTACACGTAATCACATATCAATGCCAATGTCCCAGACAAAGTC
105992327 TTACATGAAATCGGTTAACG
66 TTACATGAAATCGGTTAACG
* * **
105992347 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCA-ATACAATGCCAATGTCCCAGACATGG
1 ATGCC-ATATCCCAGACATGGTCTTACACGTAATCACATAT-CAATGCCAATGTCCCAGACAAAG
*
105992411 TCTTACATGTAATC
64 TCTTACATGAAATC
105992425 ACATCTCGAT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
85 7 0.11
86 59 0.89
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (85 bp):
ATGCCATATCCCAGACATGGTCTTACACGTAATCACATATCAATGCCAATGTCCCAGACAAAGTC
TTACATGAAATCGGTTAACG
Found at i:105995264 original size:30 final size:30
Alignment explanation
Indices: 105995228--105995290 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
105995218 TGTTTACAGT
*
105995228 AAAGGCTTCGGTCCAGTAATATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
** *
105995258 AAAGGCTTCGGCCCAGTGTTATGAATTATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
105995288 AAA
1 AAA
105995291 TAATGAAAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATG
Found at i:106003214 original size:31 final size:31
Alignment explanation
Indices: 106003179--106003242 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
106003169 CGTTTACAGT
106003179 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
106003210 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
106003241 AA
1 AA
106003243 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:106007144 original size:40 final size:39
Alignment explanation
Indices: 106007087--106007271 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
106007077 ATTAAATGAT
* * *
106007087 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
106007127 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
106007167 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
106007207 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
106007247 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
106007272 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:106007223 original size:80 final size:80
Alignment explanation
Indices: 106007086--106007292 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
106007076 AATTAAATGA
* * ** * *
106007086 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
106007151 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
106007164 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
106007229 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
106007246 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
106007293 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:106007277 original size:40 final size:39
Alignment explanation
Indices: 106007085--106007292 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
106007075 CAATTAAATG
* * ** *
106007085 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
106007125 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
106007165 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
106007205 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
106007245 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
106007285 ATATCCGG
1 ATATCCGG
106007293 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:106015224 original size:40 final size:40
Alignment explanation
Indices: 106015102--106015302 Score: 148
Period size: 40 Copynumber: 5.2 Consensus size: 40
106015092 AATTAATGAT
* * ** * *
106015102 ATCCGGGCTAAGTCCCGAAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCG-AAGGCATTCGTGCAAGTTGTTAA
* * * *
106015143 ATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAG-TGACTAA
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TTAA
106015183 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
* * * * **
106015223 AT-C---CTAATACCTGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
* * *
106015259 ATCC-GGCTAAGACCCGAA-GCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
106015297 ATCCGG
1 ATCCGG
106015303 TTGTATTCCG
Statistics
Matches: 131, Mismatches: 21, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
36 29 0.22
37 1 0.01
38 20 0.15
39 16 0.12
40 45 0.34
41 20 0.15
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
Found at i:106015287 original size:38 final size:39
Alignment explanation
Indices: 106015183--106015302 Score: 131
Period size: 36 Copynumber: 3.2 Consensus size: 39
106015173 TAGTGACTAA
* *
106015183 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCC-GGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAT
* * * *
106015223 AT-C--CTAATACCTGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAT
* *
106015259 ATCCGGCTAAGACCCGAA-GCATTCGTGCATGTGGTTAT
1 ATCCGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAT
106015297 ATCCGG
1 ATCCGG
106015303 TTGTATTCCG
Statistics
Matches: 65, Mismatches: 12, Indels: 8
0.76 0.14 0.09
Matches are distributed among these distances:
36 29 0.45
37 1 0.02
38 22 0.34
39 11 0.17
40 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (39 bp):
ATCCGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAT
Found at i:106016956 original size:27 final size:27
Alignment explanation
Indices: 106016835--106017491 Score: 706
Period size: 27 Copynumber: 24.8 Consensus size: 27
106016825 GGGTATTTTA
* *
106016835 GTAATTTTGT-AATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
106016861 GTAATT-TGTAAATCAAGGGT-AAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
106016886 GTAATTCTATAAATCGAGGGT-AAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
106016912 GTAATTCT-TAAATTGAGGATAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
106016938 GTAGTTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
106016965 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
106016992 GTAATTATGTAATTAG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
106017018 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
106017045 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
106017072 GTAATTCTGTAAATCGAGGGTAAAAACG
1 GTAATTCTGTAAATCGAGGGT-AAAACG
* * **
106017100 ATAATTTTACCAAATCGAGGGTTAAAACG
1 GTAATTCT-GTAAATCGAGGG-TAAAACG
* *
106017129 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
106017156 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
106017183 AT-ATTCTGTAAA-CTGAGGG-AAAAC-
1 GTAATTCTGTAAATC-GAGGGTAAAACG
**
106017207 GTAATTCTGTAAATCGA-GGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
106017233 GTAATTCT-TAAAACTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
106017260 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
106017287 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
106017314 ATAATTATGTAAATCGGGGGTAAAA-G
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
106017340 GTAATTATGTAAATTG-GGGT-AAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
106017365 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
106017392 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
106017419 GTAATT-TGTAAATCGAGGGTAAAA-G
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
106017444 GTAATTTTACAAATCGAGGGT-AAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
106017470 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
106017492 CTTTGGTAAT
Statistics
Matches: 536, Mismatches: 69, Indels: 51
0.82 0.11 0.08
Matches are distributed among these distances:
24 6 0.01
25 79 0.15
26 164 0.31
27 236 0.44
28 28 0.05
29 22 0.04
30 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:106017012 original size:105 final size:107
Alignment explanation
Indices: 106016835--106017491 Score: 706
Period size: 105 Copynumber: 6.2 Consensus size: 107
106016825 GGGTATTTTA
* * * * *
106016835 GTAATTTTGT-AATCGAGGGTAAAACAGTAATT-TGTAAATCAAGGGT-AAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTA
* * *
106016897 AATCGAGGGT-AAATGGTAATTCT-TAAATTGAGGATAAAACG
66 AATCG-GGGTAAAAAGGTAATTCTATAAATCGAGGGTAAAACG
* * * *
106016938 GTAGTTCTGTAAATCGAGGGTAAAAC-GATAATTATGTAAATCGGGGGTAAAATGGTAATTATGT
1 GTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACGGTAATTATGT
* * * **
106017002 AATTAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATA
65 AAATCGGGGTAAAAAGGTAATTCTATAAATCGAGGGTAAAACG
* * *
106017045 GTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAACGATAATTTTA
1 GTAATTCTGTAAATC-GAGGGTAAAACAGTAATTCTGTAAATCGAGGGT-AAAACGGTAATTAT-
** * *
106017109 CCAAATCGAGGGTTAAAACGGTAATTCTATAAATCGAGGGTAAAACA
63 GTAAATCG-GGG-TAAAAAGGTAATTCTATAAATCGAGGGTAAAACG
* * *
106017156 GTAATTCTGTAAATCAAGGGTAAAACAAT-ATTCTGTAAA-CTGAGGG-AAAAC-GTAATTCTGT
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTATGT
* *
106017217 AAATCGAGGTAAAATA-GTAATTCT-TAAAACTGAGGGTAAAACG
65 AAATCGGGGTAAAA-AGGTAATTCTATAAATC-GAGGGTAAAACG
* *
106017260 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTA
* * *
106017325 AATCGGGGGT-AAAAGGTAATTATGTAAATTG-GGGT-AAACG
66 AATC-GGGGTAAAAAGGTAATTCTATAAATCGAGGGTAAAACG
* *
106017365 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATT-TGT
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTATGT
* *
106017428 AAATCGAGGGT-AAAAGGTAATTTTACAAATCGAGGGT-AAACG
65 AAATCG-GGGTAAAAAGGTAATTCTATAAATCGAGGGTAAAACG
*
106017470 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
106017492 CTTTGGTAAT
Statistics
Matches: 474, Mismatches: 54, Indels: 50
0.82 0.09 0.09
Matches are distributed among these distances:
103 15 0.03
104 101 0.21
105 122 0.26
106 45 0.09
107 85 0.18
108 25 0.05
109 5 0.01
110 18 0.04
111 57 0.12
112 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (107 bp):
GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTA
AATCGGGGTAAAAAGGTAATTCTATAAATCGAGGGTAAAACG
Found at i:106017513 original size:27 final size:27
Alignment explanation
Indices: 106017443--106017691 Score: 211
Period size: 27 Copynumber: 9.3 Consensus size: 27
106017433 GAGGGTAAAA
***
106017443 GGTAATTTTACAAATCGAGGGTA-AAC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
106017469 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
106017496 GGTAATTTTACAAGTCGAGAGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** ** *
106017523 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
106017550 AGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* *
106017577 GGTAATTTTACAAAACTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* *
106017605 GATAATTTTACAAA-CTAGGGATATTTT
1 GGTAATTTTACAAATCGAGGG-TATTTT
* *
106017632 GGTAATTTTATAAA-CAAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
106017658 AGTAATTTTACAAAGC-AGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
106017684 GGTAATTT
1 GGTAATTT
106017692 GTAAACCAAG
Statistics
Matches: 187, Mismatches: 31, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
26 60 0.32
27 102 0.55
28 25 0.13
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:106023306 original size:29 final size:29
Alignment explanation
Indices: 106023272--106023403 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
106023262 TACTCGATTT
** * *
106023272 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
106023301 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
106023330 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
106023359 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
106023388 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
106023404 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:106031028 original size:29 final size:29
Alignment explanation
Indices: 106030996--106031073 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
106030986 ATACCCTCCG
** *
106030996 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
106031025 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
106031054 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
106031074 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:106035543 original size:25 final size:25
Alignment explanation
Indices: 106035514--106035561 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
106035504 TTATAATATG
* * *
106035514 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
106035539 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
106035562 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:106035612 original size:9 final size:9
Alignment explanation
Indices: 106035600--106035656 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
106035590 TTTGATAAAC
106035600 ATGATATGT
1 ATGATATGT
*
106035609 ATGATATGCAC
1 ATGATATG--T
*
106035620 ATGACATGT
1 ATGATATGT
*
106035629 ATGATATGCAC
1 ATGATATG--T
106035640 ATGATATGT
1 ATGATATGT
106035649 ATGATATG
1 ATGATATG
106035657 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:106035623 original size:20 final size:20
Alignment explanation
Indices: 106035598--106035668 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
106035588 ATTTTGATAA
106035598 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
106035618 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
106035638 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
106035658 ACATGAGATGT
1 ACATGATATGT
106035669 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:106035645 original size:11 final size:11
Alignment explanation
Indices: 106035609--106035663 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
106035599 CATGATATGT
106035609 ATGATATGCAC
1 ATGATATGCAC
* *
106035620 ATGACATG--T
1 ATGATATGCAC
106035629 ATGATATGCAC
1 ATGATATGCAC
*
106035640 ATGATATG--T
1 ATGATATGCAC
106035649 ATGATATGCAC
1 ATGATATGCAC
106035660 ATGA
1 ATGA
106035664 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:106035745 original size:23 final size:23
Alignment explanation
Indices: 106035715--106035905 Score: 292
Period size: 24 Copynumber: 8.1 Consensus size: 23
106035705 AGGAAGTGCA
106035715 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
106035738 AAAGGGCTTATGCCCCAATTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
106035762 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
106035785 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
106035809 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
106035832 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
106035855 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
* *
106035879 AAAAGGGCTTTTGGCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
106035903 AAA
1 AAA
106035906 AGAGGCTAGG
Statistics
Matches: 157, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
23 69 0.44
24 88 0.56
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Done.