Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 339 of 433
Found at i:106035770 original size:24 final size:23
Alignment explanation
Indices: 106035714--106035927 Score: 286
Period size: 24 Copynumber: 9.0 Consensus size: 23
106035704 GAGGAAGTGC
106035714 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
106035737 TAAAGGGCTTATGCCCCAATTAT
1 AAAAGGGCTTATGCCCCAGTTAT
106035760 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
106035784 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
106035807 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
106035831 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
106035855 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
106035879 AAAAGGGCTTTTGGCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
106035903 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
106035927 A
1 A
106035928 TGATAAAGCA
Statistics
Matches: 173, Mismatches: 13, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
23 64 0.37
24 99 0.57
25 10 0.06
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:106035782 original size:47 final size:47
Alignment explanation
Indices: 106035713--106035926 Score: 331
Period size: 47 Copynumber: 4.5 Consensus size: 47
106035703 GGAGGAAGTG
*
106035713 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAATTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
106035760 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
106035807 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* * * *
106035854 TAAAAGGGCTTTTGCCCCAGTTATTAAAAGGGCTTTTGGCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTAT
* *
106035902 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
106035927 ATGATAAAGC
Statistics
Matches: 157, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
47 116 0.74
48 30 0.19
49 11 0.07
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:106039621 original size:41 final size:42
Alignment explanation
Indices: 106039545--106039689 Score: 152
Period size: 41 Copynumber: 3.4 Consensus size: 42
106039535 TCCCAGACGA
* * * *
106039545 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAATAG
1 GGTCTTACACGAAATCAAATA-CGATGCCAATGTCCCAGATAG
* * *
106039588 GGTCTTA-ACGAAATCATATACGATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGATAG
*
106039629 GGTCTTACACGTAAATCTCAAATA-GATGCCAACGTCCCAGAT-G
1 GGTCTTACACG-AAA--TCAAATACGATGCCAATGTCCCAGATAG
106039672 TGGTCTTACACGAAATCA
1 -GGTCTTACACGAAATCA
106039690 CATCGGAATC
Statistics
Matches: 86, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
41 27 0.31
42 13 0.15
43 13 0.15
44 27 0.31
45 6 0.07
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGATAG
Found at i:106039666 original size:44 final size:42
Alignment explanation
Indices: 106039521--106039689 Score: 157
Period size: 44 Copynumber: 4.0 Consensus size: 42
106039511 TTGTAAACTC
* * * *
106039521 ATACAATGCCAACATCCCAGACGA-GGTCTTACATGTAATCAA
1 ATACGATGCCAACGTCCCAGAC-ATGGTCTTACACGAAATCAA
* * * *
106039563 ATATCGATGCC-ACTGTCCCAAATAGGGTCTTA-ACGAAATCAT
1 ATA-CGATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAA
*
106039605 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAA
1 ATACGATGCCAACGTCCCAGACATGGTCTTACACG-AAA--TCAA
**
106039650 ATA-GATGCCAACGTCCCAGATGTGGTCTTACACGAAATCA
1 ATACGATGCCAACGTCCCAGACATGGTCTTACACGAAATCA
106039690 CATCGGAATC
Statistics
Matches: 104, Mismatches: 15, Indels: 17
0.76 0.11 0.12
Matches are distributed among these distances:
41 25 0.24
42 20 0.19
43 25 0.24
44 28 0.27
45 6 0.06
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAGACATGGTCTTACACGAAATCAA
Found at i:106044467 original size:29 final size:29
Alignment explanation
Indices: 106044425--106044549 Score: 153
Period size: 29 Copynumber: 4.3 Consensus size: 29
106044415 GAAAGCATGT
*
106044425 ATATGAATGTGATTTGGGCCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
106044454 ATATGAATGTGATTTGGGCCTAATGGGCT
1 ATATGAATGTGATTTGGGCCTAATGGGCC
** *
106044483 ATGCGAATCTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * * *
106044512 ATATGAATGAGA-TTGGGCTTAGTGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
106044540 ATATGCATGT
1 ATATGAATGT
106044550 ATGTAGACTT
Statistics
Matches: 81, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 21 0.26
29 60 0.74
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:106052698 original size:16 final size:15
Alignment explanation
Indices: 106052648--106052699 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 15
106052638 TGAATCCTCC
106052648 TTTTTTTATTTATTCT
1 TTTTTTTATTT-TTCT
* *
106052664 TATTTTTATTTTTTAT
1 TTTTTTTA-TTTTTCT
106052680 TTTATTTTATTTTTCT
1 TTT-TTTTATTTTTCT
106052696 TTTT
1 TTTT
106052700 CTTTTGATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
15 1 0.03
16 21 0.70
17 8 0.27
ACGTcount: A:0.13, C:0.04, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTTTATTTTTCT
Found at i:106052709 original size:23 final size:24
Alignment explanation
Indices: 106052649--106052715 Score: 77
Period size: 23 Copynumber: 2.9 Consensus size: 24
106052639 GAATCCTCCT
*
106052649 TTTTTTATTT-ATTCTTATTTTTA
1 TTTTTTATTTGATTTTTATTTTTA
* *
106052672 TTTTTTATTTTA-TTTTATTTTTC
1 TTTTTTATTTGATTTTTATTTTTA
106052695 TTTTTCT-TTTGATTTTTATTT
1 TTTTT-TATTTGATTTTTATTT
106052716 CCATTTCAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
23 28 0.74
24 10 0.26
ACGTcount: A:0.13, C:0.04, G:0.01, T:0.81
Consensus pattern (24 bp):
TTTTTTATTTGATTTTTATTTTTA
Found at i:106052711 original size:7 final size:6
Alignment explanation
Indices: 106052656--106052715 Score: 61
Period size: 6 Copynumber: 10.2 Consensus size: 6
106052646 CCTTTTTTTA
* * *
106052656 TTTATT CTTATT TTTATT TTT-TAT TTTA-T TTTATT TTTCTT TTTCTT
1 TTTATT TTTATT TTTATT TTTAT-T TTTATT TTTATT TTTATT TTTATT
*
106052703 TTGATT TTTATT T
1 TTTATT TTTATT T
106052716 CCATTTCAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
5 6 0.13
6 39 0.87
ACGTcount: A:0.13, C:0.05, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:106061365 original size:13 final size:13
Alignment explanation
Indices: 106061331--106061356 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
106061321 AATTATGTTA
106061331 ATTGAATGTTGTG
1 ATTGAATGTTGTG
106061344 ATTGAATGTTGTG
1 ATTGAATGTTGTG
106061357 TTTGTATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (13 bp):
ATTGAATGTTGTG
Found at i:106064178 original size:27 final size:28
Alignment explanation
Indices: 106064148--106064217 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
106064138 ATAATAAGTC
*
106064148 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
106064175 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
106064203 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
106064218 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:106072115 original size:27 final size:28
Alignment explanation
Indices: 106072085--106072154 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
106072075 ATAATAAGTC
*
106072085 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
106072112 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
106072140 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
106072155 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:106073029 original size:63 final size:62
Alignment explanation
Indices: 106072956--106073080 Score: 241
Period size: 63 Copynumber: 2.0 Consensus size: 62
106072946 TGAATCATAC
106072956 TTGTGGATATACCATGACCGAATACATCACAACACCATCATTTTGGTCATGATTAAGCCAAAG
1 TTGTGGATATACCATGACCGAATACATCACAACACCATCATTTTGGTCATGATTAAG-CAAAG
106073019 TTGTGGATATACCATGACCGAATACATCACAACACCATCATTTTGGTCATGATTAAGCAAAG
1 TTGTGGATATACCATGACCGAATACATCACAACACCATCATTTTGGTCATGATTAAGCAAAG
106073081 AACTTAATGT
Statistics
Matches: 62, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
62 5 0.08
63 57 0.92
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (62 bp):
TTGTGGATATACCATGACCGAATACATCACAACACCATCATTTTGGTCATGATTAAGCAAAG
Found at i:106078175 original size:124 final size:124
Alignment explanation
Indices: 106077953--106078177 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
106077943 GAATTATGTG
* * * ** * *
106077953 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTAATTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
106078018 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAATAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAATAACGA
*
106078077 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
106078142 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTGGAAATTATAT
106078178 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAATAACGA
Found at i:106078299 original size:40 final size:40
Alignment explanation
Indices: 106078171--106078301 Score: 167
Period size: 40 Copynumber: 3.3 Consensus size: 40
106078161 ATTGCTGGAA
* *
106078171 ATTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTG
** * *
106078211 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTG
*
106078251 ATTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTG
106078291 ATTATATCCGG
1 ATTATATCCGG
106078302 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTG
Found at i:106080273 original size:28 final size:28
Alignment explanation
Indices: 106080227--106080295 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
106080217 TTTAAAACCC
*
106080227 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
106080254 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
106080282 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
106080296 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:106082144 original size:19 final size:18
Alignment explanation
Indices: 106082107--106082150 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
106082097 ATACATACAG
106082107 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
106082124 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
106082143 TACTAATT
1 TAATAATT
106082151 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:106084580 original size:28 final size:28
Alignment explanation
Indices: 106084534--106084602 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
106084524 TTTAAAACCC
*
106084534 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
106084561 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
106084589 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
106084603 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:106086457 original size:19 final size:18
Alignment explanation
Indices: 106086420--106086463 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
106086410 ATACATACAG
106086420 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
106086437 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
106086456 TACTAATT
1 TAATAATT
106086464 AAAATTTCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:106088392 original size:40 final size:40
Alignment explanation
Indices: 106088287--106088393 Score: 117
Period size: 40 Copynumber: 2.7 Consensus size: 40
106088277 TTATCTCGAT
* *
106088287 ATCGCACACTTAGTGCCTCGTATAGCCAAAGCTATTCCAA
1 ATCGCACACTTAGTGCCTAGTATAGTCAAAGCTATTCCAA
* * ** *
106088327 TTCGCACACTTAGTG-CTATATATAGTTGAAGCTATTTCAA
1 ATCGCACACTTAGTGCCTA-GTATAGTCAAAGCTATTCCAA
* *
106088367 ATCGCACACTTAGTGCCGAGCATAGTC
1 ATCGCACACTTAGTGCCTAGTATAGTC
106088394 GATTTATCAT
Statistics
Matches: 53, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
39 2 0.04
40 49 0.92
41 2 0.04
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (40 bp):
ATCGCACACTTAGTGCCTAGTATAGTCAAAGCTATTCCAA
Found at i:106102566 original size:42 final size:43
Alignment explanation
Indices: 106102508--106102588 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 43
106102498 GTCTACATGT
*
106102508 AATCAAATATCGATGCC-ACTGTCCCAAACAGGGTCTTACGCAA
1 AATCAAATATCAATGCCGA-TGTCCCAAACAGGGTCTTACGCAA
* *
106102551 AATCAAATA-CAATGCCGATGTCCCAGACATGGTCTTAC
1 AATCAAATATCAATGCCGATGTCCCAAACAGGGTCTTAC
106102589 ATGTAAATCA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 24 0.71
43 10 0.29
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (43 bp):
AATCAAATATCAATGCCGATGTCCCAAACAGGGTCTTACGCAA
Found at i:106113086 original size:46 final size:46
Alignment explanation
Indices: 106113019--106113190 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
106113009 AACCCGCCCC
*
106113019 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCATCCA
* * *
106113065 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GGC--GTTCGCATCCA
* * * *
106113113 TCA-CGAACTCAGACTCAACTCAACGAGTTC-GGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGG-CGTTCGCATCCA
106113158 TAAGTGAACTCGGACTCAACTCAACGAGTTCAG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAG
106113191 ATGCTCAACC
Statistics
Matches: 101, Mismatches: 14, Indels: 21
0.74 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 55 0.54
47 26 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCATCCA
Found at i:106113132 original size:93 final size:93
Alignment explanation
Indices: 106113024--106113194 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
106113014 GCCCCTAAGT
* *
106113024 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
106113088 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCAGATGCCTAGTTACATTTCAC
*
106113117 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
106113182 CGAGTTCAGATGC
66 CGAGTTCAGATGC
106113195 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATTTCAC
Found at i:106115617 original size:30 final size:30
Alignment explanation
Indices: 106115583--106115662 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
106115573 TAAGAAAACT
*
106115583 GAATAAAGAAATCCAAGATAGAGAAACCCA
1 GAATAAAGAAATCCAAGATAAAGAAACCCA
* *
106115613 GAATAAAGAAATCC-AGAATAAAGAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAGAAACCCA
* *
106115643 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
106115663 CGATATTATG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 2 0.05
30 39 0.91
31 2 0.05
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.11
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCCA
Found at i:106115622 original size:15 final size:15
Alignment explanation
Indices: 106115583--106115653 Score: 90
Period size: 15 Copynumber: 4.7 Consensus size: 15
106115573 TAAGAAAACT
106115583 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* *
106115598 -AGATAGAGAAACCCA
1 GA-ATAAAGAAATCCA
106115613 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
106115628 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
106115643 GGATAAAGAAA
1 GAATAAAGAAA
106115654 CCCAAGATAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
14 1 0.02
15 45 0.96
16 1 0.02
ACGTcount: A:0.58, C:0.13, G:0.18, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:106115662 original size:15 final size:15
Alignment explanation
Indices: 106115585--106115662 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
106115575 AGAAAACTGA
106115585 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
106115600 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
106115614 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
106115629 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
106115645 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
106115660 ATA
1 ATA
106115663 CGATATTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:106124321 original size:15 final size:15
Alignment explanation
Indices: 106124301--106124333 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
106124291 GGGTATGAGG
106124301 TTTTCCTAATCTCGA
1 TTTTCCTAATCTCGA
106124316 TTTTCCTAATCTCGA
1 TTTTCCTAATCTCGA
106124331 TTT
1 TTT
106124334 AACACGGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.18, C:0.24, G:0.06, T:0.52
Consensus pattern (15 bp):
TTTTCCTAATCTCGA
Found at i:106126167 original size:30 final size:30
Alignment explanation
Indices: 106126112--106126242 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
106126102 ATAGTGAATC
*
106126112 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
106126141 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
106126171 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
106126199 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
106126229 CGCACACTTAGTGC
1 CGCACACTTAGTGC
106126243 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:106126222 original size:58 final size:58
Alignment explanation
Indices: 106126111--106126242 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
106126101 TATAGTGAAT
* * * * *
106126111 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
106126170 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
106126228 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
106126243 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:106134132 original size:30 final size:30
Alignment explanation
Indices: 106134077--106134207 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
106134067 ATAGTGAATC
*
106134077 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
106134106 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
106134136 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
106134164 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
106134194 CGCACACTTAGTGC
1 CGCACACTTAGTGC
106134208 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:106134187 original size:58 final size:58
Alignment explanation
Indices: 106134076--106134207 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
106134066 TATAGTGAAT
* * * * *
106134076 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
106134135 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
106134193 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
106134208 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:106157344 original size:25 final size:26
Alignment explanation
Indices: 106157316--106157372 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
106157306 TATATAACAG
*
106157316 GAAGCTCACATAGAGCCAT-AATCAA
1 GAAGCTCACATAGAACCATAAATCAA
* **
106157341 GAAGTTCACATAGAACTTTAAATCAA
1 GAAGCTCACATAGAACCATAAATCAA
106157367 GAAGCT
1 GAAGCT
106157373 TACGAAGAGC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.21
Consensus pattern (26 bp):
GAAGCTCACATAGAACCATAAATCAA
Found at i:106161109 original size:15 final size:15
Alignment explanation
Indices: 106161084--106161125 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
106161074 ATATATATGT
*
106161084 AAATAAAAAATTATC
1 AAATAACAAATTATC
* *
106161099 CAATAACAAATAATC
1 AAATAACAAATTATC
106161114 AAATAACAAATT
1 AAATAACAAATT
106161126 TCATTCTCTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (15 bp):
AAATAACAAATTATC
Found at i:106180063 original size:13 final size:13
Alignment explanation
Indices: 106180045--106180084 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
106180035 GCCCAACAGG
106180045 GACACGCCCATGT
1 GACACGCCCATGT
* *
106180058 GACACGACCGTGT
1 GACACGCCCATGT
*
106180071 GACACGCCCTTGT
1 GACACGCCCATGT
106180084 G
1 G
106180085 CAATTGCTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.20, C:0.35, G:0.28, T:0.17
Consensus pattern (13 bp):
GACACGCCCATGT
Found at i:106185208 original size:45 final size:44
Alignment explanation
Indices: 106185096--106185260 Score: 219
Period size: 44 Copynumber: 3.8 Consensus size: 44
106185086 TATGGTACTA
* *
106185096 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAAATGAT
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* *
106185140 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-ACT
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-T
* *
106185184 ATTCTGGCCTTCGAACCTAGCAGGCTATAATGCCGGTGAAATGAT
1 A-TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* *
106185229 ATTGGG-CTTCGAGCCTAGCAGGCGA-AATGCCG
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCG
106185261 ATGGATGGAT
Statistics
Matches: 108, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
42 7 0.06
43 18 0.17
44 44 0.41
45 38 0.35
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (44 bp):
ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
Found at i:106192427 original size:25 final size:25
Alignment explanation
Indices: 106192372--106192438 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
106192362 TATTTTTTCC
*
106192372 CAATTTTACCTTAGTAAAACTTTGA
1 CAATTTTACCCTAGTAAAACTTTGA
*
106192397 CAATTTTACCCTAGTAAAA-TATTGG
1 CAATTTTACCCTAGTAAAACT-TTGA
* *
106192422 CGATTTTACCCTGGTAA
1 CAATTTTACCCTAGTAA
106192439 TATTTTGAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (25 bp):
CAATTTTACCCTAGTAAAACTTTGA
Found at i:106198763 original size:40 final size:40
Alignment explanation
Indices: 106198637--106198765 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 40
106198627 TGCTGGAAAG
* * * *
106198637 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGT
* * * *
106198677 TACATCCGGGCTAAGACCCAAAGGCATTCGTGCGAGTCGT
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGT
* *
106198717 TCTATCCGGGCTAAGACCCGAAGGTATTTGTGC-ACGTGGT
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGGT
106198757 TATATCCGG
1 TATATCCGG
106198766 TTGTATTCCG
Statistics
Matches: 73, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGT
Found at i:106203555 original size:18 final size:18
Alignment explanation
Indices: 106203532--106203570 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
106203522 ACGCAAAGTC
106203532 TGTAACACTATTCTTAGA
1 TGTAACACTATTCTTAGA
106203550 TGTAACACTATTCTTAGA
1 TGTAACACTATTCTTAGA
106203568 TGT
1 TGT
106203571 TCAGCATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (18 bp):
TGTAACACTATTCTTAGA
Found at i:106218236 original size:29 final size:29
Alignment explanation
Indices: 106218172--106218255 Score: 100
Period size: 28 Copynumber: 3.0 Consensus size: 29
106218162 AAGCATGACT
* *
106218172 ATAAATGTGATTTTGGCCTAGT-GGCCAT
1 ATAAATGTGATTTTGGCCTAATGGGCCAC
*
106218200 ATGAATGTGATTTTGGCCTAATGGGCCAC
1 ATAAATGTGATTTTGGCCTAATGGGCCAC
* * *
106218229 ATAAATGTGA-ATGGGCTTAATGGGCCA
1 ATAAATGTGATTTTGGCCTAATGGGCCA
106218256 TATGGAAGAG
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 34 0.71
29 14 0.29
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (29 bp):
ATAAATGTGATTTTGGCCTAATGGGCCAC
Found at i:106224853 original size:29 final size:29
Alignment explanation
Indices: 106224820--106224893 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
106224810 GTGACGAGAT
106224820 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
106224849 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
106224878 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
106224894 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:106224909 original size:29 final size:29
Alignment explanation
Indices: 106224877--106224952 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
106224867 CTGGAAATAT
* *
106224877 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
106224906 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
106224935 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
106224953 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:106224920 original size:58 final size:58
Alignment explanation
Indices: 106224820--106224952 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
106224810 GTGACGAGAT
* * * * * *
106224820 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
106224878 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
106224936 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
106224953 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:106226471 original size:50 final size:50
Alignment explanation
Indices: 106226396--106226687 Score: 268
Period size: 50 Copynumber: 5.8 Consensus size: 50
106226386 ACTGAAGCAC
** *
106226396 TCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
106226446 TCTGGTACACATAGTAGCCTGCACTTAGTACTAAACATGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * * * * *
106226496 TCAGATACACGTAGTAGGCTACACTTAGTACTACACACGTGA-TTGAAGCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CAA
* * * **
106226547 TCGGGTACTCATAGTAGCCTACACTTAGTACTACACATGCAACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
** * * *
106226597 TCTGGTACATGTAGTAGCTTGCACTT-GTACTACACACGTGACCTGAAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACAA
* ***
106226648 TTTTAAACACATAGTAGCCTGCA-TATAGTAC-ACACATGTG
1 TCTGGTACACATAGTAGCCTGCACT-TAGTACTACACATGTG
106226688 TTCTCACAAC
Statistics
Matches: 193, Mismatches: 42, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
49 16 0.08
50 105 0.54
51 67 0.35
52 5 0.03
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:106226585 original size:101 final size:100
Alignment explanation
Indices: 106226449--106226637 Score: 263
Period size: 101 Copynumber: 1.9 Consensus size: 100
106226439 CTAACAATCT
* ** *
106226449 GGTACACATAGTAGCCTGCACTTAGTACTAAACATGTGACCTAACCATCAGATACACGTAGTAGG
1 GGTACACATAGTAGCCTACACTTAGTACTAAACATGCAACCTAACAATCAGATACACGTAGTA-G
106226514 C-TACACTTAGTACTACACACGTGATTGAAGCTATCG
65 CTTACACTT-GTACTACACACGTGATTGAAGCTATCG
* * * * *
106226550 GGTACTCATAGTAGCCTACACTTAGTACTACACATGCAACCTAACAATCTGGTACATGTAGTAGC
1 GGTACACATAGTAGCCTACACTTAGTACTAAACATGCAACCTAACAATCAGATACACGTAGTAGC
*
106226615 TTGCACTTGTACTACACACGTGA
66 TTACACTTGTACTACACACGTGA
106226638 CCTGAAACCA
Statistics
Matches: 77, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
100 17 0.22
101 60 0.78
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (100 bp):
GGTACACATAGTAGCCTACACTTAGTACTAAACATGCAACCTAACAATCAGATACACGTAGTAGC
TTACACTTGTACTACACACGTGATTGAAGCTATCG
Found at i:106226661 original size:101 final size:101
Alignment explanation
Indices: 106226452--106226685 Score: 251
Period size: 101 Copynumber: 2.3 Consensus size: 101
106226442 ACAATCTGGT
* ** *
106226452 ACACATAGTAGCCTGCACTTAGTACTAAACATGTGACCTAACCATCAGATACACGTAGTAGGCTA
1 ACACATAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAATCAGATACACGTAGTAGGCTA
* * * **
106226517 CACTTAGTACTACACACGTGATTGAAGCTATCGGGT
66 CACTTAGTACTACACACGTGACTGAAACCATCGGAA
* * * * *
106226553 ACTCATAGTAGCCTACACTTAGTACTACACATGCAACCTAACAATCTGGTACATGTAGTA-GCTT
1 ACACATAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAATCAGATACACGTAGTAGGC-T
* ***
106226617 GCACTT-GTACTACACACGTGACCTGAAACCATTTTAA
65 ACACTTAGTACTACACACGTGA-CTGAAACCATCGGAA
106226654 ACACATAGTAGCCTGCA-TATAGTAC-ACACATG
1 ACACATAGTAGCCTGCACT-TAGTACTACACATG
106226686 TGTTCTCACA
Statistics
Matches: 110, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
100 25 0.23
101 85 0.77
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (101 bp):
ACACATAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAATCAGATACACGTAGTAGGCTA
CACTTAGTACTACACACGTGACTGAAACCATCGGAA
Found at i:106226683 original size:151 final size:151
Alignment explanation
Indices: 106226405--106226683 Score: 384
Period size: 151 Copynumber: 1.8 Consensus size: 151
106226395 CTCTGGTATG
* *
106226405 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACATAGTAGCCTGCAC
1 CATAGTAGCCTACACTTAGTACTACACATGCAACCTAACAATCTGGTACACATAGTAGCCTGCAC
* * * *
106226470 TTAGTACTAAACATGTGACCTAACCATCAGATACACGTAGTAGGCTACACTTAGTACTACACACG
66 TTAGTACTAAACACGTGACCTAACCATCAGAAACACATAGTAGCCTACACTTAGTACTACACACG
106226535 TGATTGAAGCTATCGGGTACT
131 TGATTGAAGCTATCGGGTACT
** *
106226556 CATAGTAGCCTACACTTAGTACTACACATGCAACCTAACAATCTGGTACATGTAGTAGCTTGCAC
1 CATAGTAGCCTACACTTAGTACTACACATGCAACCTAACAATCTGGTACACATAGTAGCCTGCAC
* *** *
106226621 TT-GTACTACACACGTGACCTGAAACCATTTTAAACACATAGTAGCCTGCA-TATAGTAC-ACAC
66 TTAGTACTAAACACGTGACCT--AACCATCAGAAACACATAGTAGCCTACACT-TAGTACTACAC
106226683 A
128 A
106226684 TGTGTTCTCA
Statistics
Matches: 111, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
150 16 0.14
151 68 0.61
152 27 0.24
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (151 bp):
CATAGTAGCCTACACTTAGTACTACACATGCAACCTAACAATCTGGTACACATAGTAGCCTGCAC
TTAGTACTAAACACGTGACCTAACCATCAGAAACACATAGTAGCCTACACTTAGTACTACACACG
TGATTGAAGCTATCGGGTACT
Found at i:106229233 original size:57 final size:58
Alignment explanation
Indices: 106229123--106229260 Score: 145
Period size: 57 Copynumber: 2.4 Consensus size: 58
106229113 ATTTTACAGC
* * * * * *
106229123 AGGATTACCAGTCCAGGCTAAATCCTATCTGTAGCATATGCTCTAGAGAGCTTA-ATT
1 AGGATTACCCGTCCAGGCTAAATCCAATCTATAGCAAAAGCTCAAGAGAGCTTACATT
* * *
106229180 TGGATTACCCGTTCAGGCTAAATCCAATCTAT-GACAAAAGCTCAAGAGGGCTTACATT
1 AGGATTACCCGTCCAGGCTAAATCCAATCTATAG-CAAAAGCTCAAGAGAGCTTACATT
* * *
106229238 AGAATTACCCATCCGGGCTAAAT
1 AGGATTACCCGTCCAGGCTAAAT
106229261 TCTATCTAAA
Statistics
Matches: 65, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
56 1 0.02
57 43 0.66
58 21 0.32
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (58 bp):
AGGATTACCCGTCCAGGCTAAATCCAATCTATAGCAAAAGCTCAAGAGAGCTTACATT
Found at i:106230912 original size:67 final size:66
Alignment explanation
Indices: 106230771--106230968 Score: 182
Period size: 67 Copynumber: 3.0 Consensus size: 66
106230761 GCACATGCAA
* * ** *
106230771 CCCCATGTTCAATGTCCTAGCAGACTCCATTAGTTGTCATACTAAGCTATGGTCATAGACCTTAA
1 CCCCATGTTTAATGTCCTAGCAGACTCCACTAGTTACCATACTAAGCTATGGTCATACACCTTAA
106230836 T
66 T
* ** * * * *
106230837 CCCTATGTTTAATGTCCTAGTGGACTCTACTAGTTACCATAGTTGAGCTATGGTCTTACACCTTA
1 CCCCATGTTTAATGTCCTAGCAGACTCCACTAGTTACCATA-CTAAGCTATGGTCATACACCTTA
106230902 AT
65 AT
* * * * * * * *
106230904 CCCCATGTTTAACGTCTTGGC-GAACTCCACTGGTTACCATAATCAAGCCATTGTCTTACACCTT
1 CCCCATGTTTAATGTCCTAGCAG-ACTCCACTAGTTACCATACT-AAGCTATGGTCATACACCTT
106230968 A
64 A
106230969 TAACCTCTTT
Statistics
Matches: 106, Mismatches: 23, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
66 35 0.33
67 71 0.67
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.33
Consensus pattern (66 bp):
CCCCATGTTTAATGTCCTAGCAGACTCCACTAGTTACCATACTAAGCTATGGTCATACACCTTAA
T
Found at i:106232399 original size:48 final size:47
Alignment explanation
Indices: 106232321--106232460 Score: 147
Period size: 48 Copynumber: 2.9 Consensus size: 47
106232311 ATATGGTATC
* * *
106232321 GATAAGAGATTCCGTATAAGACCATGTCTAGGACATGGCATCGGCAATA
1 GATATGAGATCCCATATAAGACCAT-TCTAGGACATGGCATCGGC-ATA
* * * *
106232370 G-TATGAGATCCCATGTAAGACCATATCTAGGATATGGCATTGGCATT
1 GATATGAGATCCCATATAAGACCAT-TCTAGGACATGGCATCGGCATA
* * *
106232417 GATGTGAGGTCCCATATAAGACCATGCTAGGGACATGGCATCGG
1 GATATGAGATCCCATATAAGACCATTCTA-GGACATGGCATCGG
106232461 TACCAATATG
Statistics
Matches: 75, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
47 6 0.08
48 68 0.91
49 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (47 bp):
GATATGAGATCCCATATAAGACCATTCTAGGACATGGCATCGGCATA
Found at i:106235075 original size:55 final size:53
Alignment explanation
Indices: 106234892--106235088 Score: 214
Period size: 49 Copynumber: 3.8 Consensus size: 53
106234882 ACACGGGTAC
* * *
106234892 CTTACCATTTCCATGACTTGTCATGGTCTTACATGGTATCCTT---TT-GAAA
1 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
106234941 CTTACCATTGCCATGTCTTGACATGGTCTTACAT-G---CCTTGCCTTATG-AA
1 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * *
106234990 CTCACCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* * *
106235043 CCTTACCAATTGTCATGCCTTGGCATGGTCTTACATGGTATCCTTG
1 -CTTACC-ATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTG
106235089 AACCCTAATG
Statistics
Matches: 123, Mismatches: 13, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
45 4 0.03
48 3 0.02
49 65 0.53
50 1 0.01
52 1 0.01
53 12 0.10
54 5 0.04
55 32 0.26
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.37
Consensus pattern (53 bp):
CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:106240544 original size:31 final size:31
Alignment explanation
Indices: 106240506--106240568 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
106240496 CTTTTCACAC
*
106240506 TTCATATTTCATAACACTGGGCCGAAGTCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
** *
106240537 TTCATATTTCATATTATTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
106240568 T
1 T
106240569 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.40
Consensus pattern (31 bp):
TTCATATTTCATAACACTGGGCCGAAGCCTT
Found at i:106240834 original size:23 final size:23
Alignment explanation
Indices: 106240779--106240871 Score: 141
Period size: 23 Copynumber: 4.0 Consensus size: 23
106240769 CCTAGCCTCT
* *
106240779 TTTAATAATTGGGGCAAAAAGCCC
1 TTTAATAACTGGGGC-ATAAGCCC
106240803 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
106240827 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
106240850 TTTAATAACTAGGGCATAAGCC
1 TTTAATAACTGGGGCATAAGCC
106240872 ATTTTGCACT
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
23 44 0.68
24 7 0.11
25 14 0.22
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:106240951 original size:20 final size:20
Alignment explanation
Indices: 106240926--106240992 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 20
106240916 TTATGAATAC
106240926 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
106240946 ATCATGTGCTTA-CTATACAT
1 ATCATGTGCATATC-ATACAT
* *
106240966 GTCATGTGCATATCATATAT
1 ATCATGTGCATATCATACAT
*
106240986 ACCATGT
1 ATCATGT
106240993 TTATCAAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
19 1 0.03
20 37 0.95
21 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:106248646 original size:31 final size:31
Alignment explanation
Indices: 106248611--106248673 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
106248601 CTTTTCACAC
*
106248611 TTCATATTTCATAACACTAGGCCGAAGCCTT
1 TTCATAGTTCATAACACTAGGCCGAAGCCTT
** *
106248642 TTCATAGTTCATATTACTGGGCCGAAGCCTT
1 TTCATAGTTCATAACACTAGGCCGAAGCCTT
106248673 T
1 T
106248674 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (31 bp):
TTCATAGTTCATAACACTAGGCCGAAGCCTT
Found at i:106248910 original size:25 final size:24
Alignment explanation
Indices: 106248863--106248958 Score: 133
Period size: 25 Copynumber: 4.0 Consensus size: 24
106248853 CTGCTTTCGT
*
106248863 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
106248888 ATAACTGGGGCAAAAAGCCCTTTTA
1 ATAACTGGGGC-ATAAGCCCTTTTA
106248913 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
106248936 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
106248959 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
23 23 0.35
24 13 0.20
25 25 0.38
26 4 0.06
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:106248939 original size:23 final size:23
Alignment explanation
Indices: 106248884--106248957 Score: 121
Period size: 23 Copynumber: 3.1 Consensus size: 23
106248874 CCTAGCCTCT
*
106248884 TTTAATAACTGGGGCAAAAAGCCC
1 TTTAATAACTGGGGC-ATAAGCCC
106248908 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
106248932 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
106248955 TTT
1 TTT
106248958 TGCACTTCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 26 0.54
24 7 0.15
25 15 0.31
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:106249033 original size:20 final size:20
Alignment explanation
Indices: 106249008--106249074 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
106248998 TTATGAATAC
106249008 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
106249028 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
106249048 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
106249068 ACCATGT
1 ATCATGT
106249075 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:106249039 original size:11 final size:11
Alignment explanation
Indices: 106249008--106249063 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
106248998 TTATGAATAC
106249008 ATCATGTGCAT
1 ATCATGTGCAT
*
106249019 ATCA--TACAT
1 ATCATGTGCAT
106249028 ATCATGTGCAT
1 ATCATGTGCAT
*
106249039 ATCA--TACAT
1 ATCATGTGCAT
*
106249048 GTCATGTGCAT
1 ATCATGTGCAT
106249059 ATCAT
1 ATCAT
106249064 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:106251157 original size:40 final size:39
Alignment explanation
Indices: 106251103--106251321 Score: 215
Period size: 40 Copynumber: 5.5 Consensus size: 39
106251093 ACTCGATTGT
* * * * *
106251103 CTTCGAGACATAGCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGTT-TAGTAACTCGCACAAATGC
* *
106251143 CTTTGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* * * *
106251183 CTTCGGGACTTAACCCGATTTTGGTAACTCACACAAATGC
1 CTTCGGGACTTAGCCCG-GTTTAGTAACTCGCACAAATGC
* *
106251223 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* * * *
106251263 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGG-TTTAGTAAC-TCGCACAAATGC
106251304 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
106251322 ACACCATTCG
Statistics
Matches: 150, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
40 122 0.81
41 27 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGTTTAGTAACTCGCACAAATGC
Found at i:106251321 original size:81 final size:80
Alignment explanation
Indices: 106251141--106251322 Score: 240
Period size: 80 Copynumber: 2.3 Consensus size: 80
106251131 TCGCACAATT
* * * *
106251141 GCCTTTGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGATTTTG
1 GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGATTTTA
*
106251206 GTAACTCACACAAAT
66 GTAACTCACACAAAA
* * * *
106251221 GCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGA-TTT
1 GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAACCC-GATTTT
* *
106251285 AGTCACTTAGCACAAAA
65 AGTAACTCA-CACAAAA
106251302 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
106251323 CACCATTCGA
Statistics
Matches: 87, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
80 60 0.69
81 27 0.31
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGATTTTA
GTAACTCACACAAAA
Found at i:106256094 original size:21 final size:19
Alignment explanation
Indices: 106256026--106256110 Score: 88
Period size: 19 Copynumber: 4.6 Consensus size: 19
106256016 ATATACATCT
*
106256026 TTATAAATTTTATTATATG
1 TTATATATTTTATTATATG
*
106256045 TTATAT-TTTTAATATATATA
1 TTATATATTTT-AT-TATATG
* *
106256065 TTATTTATTCTA-T-TATG
1 TTATATATTTTATTATATG
106256082 TT-TATATTTTATTATATG
1 TTATATATTTTATTATATG
106256100 TTATATATTTT
1 TTATATATTTT
106256111 TACTACATAT
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
16 7 0.13
17 6 0.11
18 11 0.21
19 15 0.28
20 11 0.21
21 3 0.06
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.64
Consensus pattern (19 bp):
TTATATATTTTATTATATG
Found at i:106256337 original size:28 final size:28
Alignment explanation
Indices: 106256297--106256350 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
106256287 ATACACATTA
* *
106256297 TTTTATTACTTATTAATTATATATGTTT
1 TTTTATTACTTATTAAATAAATATGTTT
**
106256325 TTTTATTTTTTATTAAATAAATATGT
1 TTTTATTACTTATTAAATAAATATGT
106256351 GTAATATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (28 bp):
TTTTATTACTTATTAAATAAATATGTTT
Found at i:106258918 original size:40 final size:39
Alignment explanation
Indices: 106258832--106258980 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 39
106258822 AATTGAATGA
* * * **
106258832 TATCCGGGCTAAGTCCCGAAGACATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCATTGTGC-GAGTCA-TAC
* *
106258871 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGT--CATAC
*
106258912 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCATAC
106258951 TATCCGGGCTAAGACCCGAAGGCATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTGTGC
106258981 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 10, Indels: 16
0.78 0.08 0.14
Matches are distributed among these distances:
38 1 0.01
39 29 0.32
40 62 0.67
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCATAC
Found at i:106258995 original size:79 final size:79
Alignment explanation
Indices: 106258831--106258996 Score: 203
Period size: 79 Copynumber: 2.1 Consensus size: 79
106258821 AAATTGAATG
* *
106258831 ATATCCGGGCTAAGTCCCGAAGACATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
106258896 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * ** *
106258910 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
106258974 -ATTGTGC-ACGTGGTT
64 AATTGTGCTA-GTGGCT
106258989 ATATCCGG
1 ATATCCGG
106258997 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 44 0.59
80 29 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:106265779 original size:40 final size:40
Alignment explanation
Indices: 106265713--106265879 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
106265703 GAATTGAATG
* * *
106265713 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
106265752 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
106265792 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
106265832 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
106265872 ATATCCGG
1 ATATCCGG
106265880 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:106273017 original size:40 final size:40
Alignment explanation
Indices: 106272973--106273085 Score: 147
Period size: 40 Copynumber: 2.8 Consensus size: 40
106272963 TGCTGGAAAT
* * *
106272973 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
* *
106273013 TATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* *
106273053 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGC
106273086 ACGTGTTATA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
39 3 0.05
40 59 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:106275874 original size:30 final size:30
Alignment explanation
Indices: 106275819--106275949 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
106275809 ATAGTGAATC
*
106275819 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
106275848 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
106275878 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
106275906 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
106275936 CGCACACTTAGTGC
1 CGCACACTTAGTGC
106275950 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:106275929 original size:58 final size:58
Alignment explanation
Indices: 106275818--106275949 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
106275808 TATAGTGAAT
* * * * *
106275818 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
106275877 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
106275935 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
106275950 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:106283826 original size:30 final size:30
Alignment explanation
Indices: 106283771--106283901 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
106283761 ATAGTGAATC
*
106283771 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
106283800 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
106283830 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
106283858 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
106283888 CGCACACTTAGTGC
1 CGCACACTTAGTGC
106283902 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:106283881 original size:58 final size:58
Alignment explanation
Indices: 106283770--106283901 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
106283760 TATAGTGAAT
* * * * *
106283770 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
106283829 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
106283887 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
106283902 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:106288431 original size:121 final size:121
Alignment explanation
Indices: 106288213--106288431 Score: 305
Period size: 121 Copynumber: 1.8 Consensus size: 121
106288203 AATTATGTGG
* * * * * * * *
106288213 AATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGGG
1 AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGG
* **
106288278 CTAAGTCCCGAAGGCGATTATGCTAGTGATTATTTGTGTTTGAGCCTTAGTAACGA
66 CTAAGTCCCGAAGACGATTATGCTAGAAATTATTTGTGTTTGAGCCTTAGTAACGA
*
106288334 AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATATCCGGG
1 AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGG
*
106288399 CTAAGTCCCGAAGAC-ATTTATGCTGGAAATTAT
66 CTAAGTCCCGAAGACGA-TTATGCTAGAAATTAT
106288432 ATCCGGGTTA
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
120 1 0.01
121 83 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (121 bp):
AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGG
CTAAGTCCCGAAGACGATTATGCTAGAAATTATTTGTGTTTGAGCCTTAGTAACGA
Found at i:106288554 original size:39 final size:40
Alignment explanation
Indices: 106288390--106288556 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
106288380 AAATTGAATG
* * * ***
106288390 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGGTT
* * * *
106288430 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
* * *
106288470 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
*
106288510 CTATCCGGGCTAAGACCCGAA-GCATTTGTGC-ACGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGGTT
106288549 ATATCCGG
1 ATATCCGG
106288557 TTGTATTCCG
Statistics
Matches: 103, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
38 1 0.01
39 21 0.20
40 81 0.79
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
Found at i:106290529 original size:108 final size:110
Alignment explanation
Indices: 106290376--106290576 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
106290366 ATCCTTTTGA
* *
106290376 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
106290439 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
106290484 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
*
106290549 TGTCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
106290577 TATCCTTGAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.58
109 7 0.08
110 27 0.33
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:106290583 original size:55 final size:54
Alignment explanation
Indices: 106290329--106290584 Score: 262
Period size: 55 Copynumber: 4.8 Consensus size: 54
106290319 ACACGGGTAC
* * *
106290329 CTTACC-ATTCCCATGACTTGTCATGGTCTTACATGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
106290378 CTTACC-ATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * *
106290431 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAA
* * * *
106290486 CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
106290539 CCTTACCAATTGTCATGCCTTGGCATGGTCTTACATGGTATCCTTG
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
106290585 AACCCTAATG
Statistics
Matches: 172, Mismatches: 22, Indels: 20
0.80 0.10 0.09
Matches are distributed among these distances:
49 39 0.23
52 4 0.02
53 44 0.26
54 12 0.07
55 71 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:106292817 original size:42 final size:44
Alignment explanation
Indices: 106292716--106292861 Score: 153
Period size: 42 Copynumber: 3.4 Consensus size: 44
106292706 TGGGATTTCA
**
106292716 TGTAAGACCACATCTGGGAC-GTTGGCATC-A-ATTTGATATTTACG
1 TGTAAGACCATGTCTGGGACAG-TGGCATCGATATTTG--ATTTACG
106292760 TGTAAGACCATGTCTGGGACA-TCGGCATCG-TATTTGATTT-CG
1 TGTAAGACCATGTCTGGGACAGT-GGCATCGATATTTGATTTACG
* * *
106292802 TGTAATACCCTGTCTGGGACAGTGGCATCGATATTTGA-TTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTACG
*
106292845 TGTAAGACCACGTCTGG
1 TGTAAGACCATGTCTGG
106292862 AACGTTGGCA
Statistics
Matches: 87, Mismatches: 8, Indels: 15
0.79 0.07 0.14
Matches are distributed among these distances:
42 30 0.34
43 28 0.32
44 24 0.28
45 5 0.06
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTACG
Found at i:106292871 original size:43 final size:43
Alignment explanation
Indices: 106292709--106292872 Score: 158
Period size: 43 Copynumber: 3.8 Consensus size: 43
106292699 TTTGATATGG
* *
106292709 GATTTCATGTAAGACCACATCTGGGACGTTGGCATC-A-ATTT
1 GATTACATGTAAGACCACGTCTGGGACGTTGGCATCGATATTT
* * * *
106292750 GATATTTACGTGTAAGACCATGTCTGGGACATCGGCATCG-TATTT
1 G--A-TTACATGTAAGACCACGTCTGGGACGTTGGCATCGATATTT
* * *
106292795 GATTTCGTGTAATACC-CTGTCTGGGACAG-TGGCATCGATATTT
1 GATTACATGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTT
*
106292838 GATTACATGTAAGACCACGTCTGGAACGTTGGCAT
1 GATTACATGTAAGACCACGTCTGGGACGTTGGCAT
106292873 TTTATGGCTT
Statistics
Matches: 98, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
41 1 0.01
42 29 0.30
43 34 0.35
44 29 0.30
45 5 0.05
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
GATTACATGTAAGACCACGTCTGGGACGTTGGCATCGATATTT
Found at i:106294259 original size:43 final size:42
Alignment explanation
Indices: 106294154--106294271 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 42
106294144 GGCTTCTATT
106294154 TTACGTGTAAGACCATGTCTGGGACA-TCGGCATCATATTTGA
1 TTACGTGTAAGACCATGTCTGGGACAGT-GGCATCATATTTGA
* * * ** *
106294196 TTTCGTCTAAAACGTTGTCTGGGACAGTGGCATCAATGTTTGA
1 TTACGTGTAAGACCATGTCTGGGACAGTGGCATC-ATATTTGA
* *
106294239 TTACATGTAAGACCACGTCTGGGAC-GTTGGCAT
1 TTACGTGTAAGACCATGTCTGGGACAG-TGGCAT
106294272 TGTATATGTT
Statistics
Matches: 60, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
42 28 0.47
43 32 0.53
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGGACAGTGGCATCATATTTGA
Found at i:106294941 original size:23 final size:22
Alignment explanation
Indices: 106294910--106294953 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
106294900 TTGATCATAT
*
106294910 GTTTAGGTATGATTTTAGTTTAA
1 GTTTAGGTATGAATTTA-TTTAA
*
106294933 GTTTTGGTATGAATTTATTTA
1 GTTTAGGTATGAATTTATTTA
106294954 TGAATTGGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.25, C:0.00, G:0.20, T:0.55
Consensus pattern (22 bp):
GTTTAGGTATGAATTTATTTAA
Found at i:106299546 original size:26 final size:28
Alignment explanation
Indices: 106299517--106299577 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
106299507 AGCATAGCTG
*
106299517 CCAGAACAT-ATA-TTGTGGTAGAGCCA
1 CCAGAACATAATATTTGTGGCAGAGCCA
106299543 CCAGAA-ATAGATATTTGTGGCAGAGCCA
1 CCAGAACATA-ATATTTGTGGCAGAGCCA
106299571 CCAGAAC
1 CCAGAAC
106299578 GCTTCCTCCA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.07
26 6 0.20
27 3 0.10
28 19 0.63
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (28 bp):
CCAGAACATAATATTTGTGGCAGAGCCA
Found at i:106306973 original size:124 final size:124
Alignment explanation
Indices: 106306751--106306975 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
106306741 GAATTATGTG
* * * ** * *
106306751 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTAATTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
106306816 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAATAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAATAACGA
*
106306875 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
106306940 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTGGAAATTATAT
106306976 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAATAACGA
Found at i:106307097 original size:40 final size:39
Alignment explanation
Indices: 106306970--106307099 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
106306960 TTGCTGGAAA
*
106306970 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * **
106307010 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
106307050 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
106307090 TTATATCCGG
1 TTATATCCGG
106307100 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:106310499 original size:28 final size:27
Alignment explanation
Indices: 106310455--106310534 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 27
106310445 GCTACCAGAA
*
106310455 CAGATA-TTGTGGCAGAGCCATCGGAAAT
1 CAGATATTTGTGGCAGAGCCA-C-CAAAT
*
106310483 -AGATATTTGTGGTAGAGCCACCAAAT
1 CAGATATTTGTGGCAGAGCCACCAAAT
*
106310509 CAGATATTTGTGGCAAAGCCACCAAA
1 CAGATATTTGTGGCAGAGCCACCAAA
106310535 ATGTTTCCTC
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 4 0.09
27 29 0.63
28 13 0.28
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.23
Consensus pattern (27 bp):
CAGATATTTGTGGCAGAGCCACCAAAT
Found at i:106310840 original size:28 final size:27
Alignment explanation
Indices: 106310802--106310861 Score: 111
Period size: 28 Copynumber: 2.2 Consensus size: 27
106310792 GGGCTTGTTG
106310802 GCCCATAACCTGATTTGGGCCCATTAA
1 GCCCATAACCTGATTTGGGCCCATTAA
106310829 GCCCATTAACCTGATTTGGGCCCATTAA
1 GCCCA-TAACCTGATTTGGGCCCATTAA
106310857 GCCCA
1 GCCCA
106310862 AATATACCGA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 5 0.16
28 27 0.84
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (27 bp):
GCCCATAACCTGATTTGGGCCCATTAA
Found at i:106315981 original size:29 final size:29
Alignment explanation
Indices: 106315939--106316029 Score: 157
Period size: 29 Copynumber: 3.2 Consensus size: 29
106315929 GAAAGCATGT
106315939 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
106315968 ATATGAATGTGATTTGGGCCTAATGAGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
106315997 ATATGAATGTGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
106316025 ATATG
1 ATATG
106316030 CATATATGTA
Statistics
Matches: 59, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
28 19 0.32
29 40 0.68
ACGTcount: A:0.25, C:0.13, G:0.31, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:106320813 original size:27 final size:28
Alignment explanation
Indices: 106320757--106320826 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
106320747 AAACTTGTAC
106320757 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
106320785 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
106320812 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
106320827 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:106320837 original size:27 final size:27
Alignment explanation
Indices: 106320757--106320838 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
106320747 AAACTTGTAC
* *
106320757 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
106320785 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
106320812 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
106320839 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:106328455 original size:27 final size:28
Alignment explanation
Indices: 106328399--106328468 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
106328389 AAACTTGTAC
106328399 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
106328427 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
106328454 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
106328469 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:106328479 original size:27 final size:27
Alignment explanation
Indices: 106328399--106328480 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
106328389 AAACTTGTAC
* *
106328399 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
106328427 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
106328454 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
106328481 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:106330393 original size:49 final size:48
Alignment explanation
Indices: 106330269--106331013 Score: 557
Period size: 49 Copynumber: 15.7 Consensus size: 48
106330259 CCCTTCGGGA
* * * * * *
106330269 CTTATCACAT-TTATACACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
106330316 CCTATCACATA-TATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
*
106330363 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
106330412 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
106330461 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
106330510 CTTATCACATA-TATACACGCTTTCACACTCATCACATCGGCCATTAGGC
1 CTTATCACATATTATACA--CTTTCACATTCATCACATCGGCCATTAGGC
* * * *
106330559 CTTATCACATATATATACACTTTCACATTCATCGCGT-AG--A--A--T
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * * **
106330601 CTTAAATCA-A-AATATA-AATTT-TCATGT-ATTCACATC-ACAATTATTC
1 CTT--ATCACATATTATACACTTTCACAT-TCA-TCACATCGGCCATTAGGC
* ** * * ** * * * *
106330647 AAATATACTTCACATACCACATATACTATCATGTACA-GAC-TTGGTC-TT-GGC
1 --CT-TA--TCACATA--TTATACACTTTCACATTCATCACATCGGCCATTAGGC
** * ** * *
106330698 CGAATCTACATCA--AT-CATTTTC-CAATGAAT-A-A-C--CC-TTCGGGA
1 CTTATC-ACAT-ATTATACACTTTCAC-ATTCATCACATCGGCCATT-AGGC
* * * * * *
106330740 CTTATCACAT-TTATACACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
106330787 CCTATCACATA-TATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
*
106330834 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
106330883 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
106330932 CTTATCACATA-TATACACGCTTTCACACTCATCACATCGGCCATTAGGC
1 CTTATCACATATTATACA--CTTTCACATTCATCACATCGGCCATTAGGC
106330981 CTTATCACATATATATACACTTTCACATTCATC
1 CTTATCACATAT-TATACACTTTCACATTCATC
106331014 GCGTAGAATC
Statistics
Matches: 570, Mismatches: 73, Indels: 108
0.76 0.10 0.14
Matches are distributed among these distances:
39 4 0.01
40 12 0.02
41 10 0.02
42 21 0.04
43 10 0.02
44 8 0.01
46 3 0.01
47 119 0.21
48 5 0.01
49 349 0.61
50 1 0.00
51 14 0.02
52 3 0.01
53 6 0.01
54 3 0.01
55 2 0.00
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (48 bp):
CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:106334630 original size:40 final size:40
Alignment explanation
Indices: 106334586--106334697 Score: 188
Period size: 40 Copynumber: 2.8 Consensus size: 40
106334576 CCAGCATGAT
* * *
106334586 TGCTCTTCGGGACCTAGCCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
106334626 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
106334666 TGCTCTTCGGAACTTAGTCCGGATACATCACT
1 TGCTCTTCGGGACTTAGTCCGGATACATCACT
106334698 CTCAATTCTC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
Found at i:106336947 original size:49 final size:48
Alignment explanation
Indices: 106336821--106337047 Score: 305
Period size: 49 Copynumber: 4.7 Consensus size: 48
106336811 CCCTTCGGGA
* * * * *
106336821 CTTATCACAT-TTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
106336868 CCTATCACATA-TATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
*
106336915 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
106336964 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
106337013 CTTATCACATATATATATACACTTTCACATTCATC
1 CTTATCAC--ATAT-TATACACTTTCACATTCATC
106337048 GCGTAGAATC
Statistics
Matches: 164, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
47 51 0.31
49 90 0.55
51 23 0.14
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (48 bp):
CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:106344581 original size:68 final size:63
Alignment explanation
Indices: 106344497--106344656 Score: 171
Period size: 63 Copynumber: 2.5 Consensus size: 63
106344487 ATGTATGGTG
* * *
106344497 CTGAGTGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCACATGGGTC
1 CTGAGTGTACACCATGTGTACAAGAGAGCTAC--GACA-TA-AAT-TAGCTAGGTCACATGGGTC
106344562 ATA
61 ATA
* * **
106344565 CT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGAGATAAATTGGCTAGGTCACATGGGTGGTA
1 CTGA-GTGTACACCATGT-GTACAAGAGAGCTACGACATAAATTAGCTAGGTCACATGGGTCATA
*
106344628 CTGAGTGTTCACCATGTGTACAAGAGAGC
1 CTGAGTGTACACCATGTGTACAAGAGAGC
106344657 CGAACTATAT
Statistics
Matches: 80, Mismatches: 8, Indels: 13
0.79 0.08 0.13
Matches are distributed among these distances:
62 1 0.01
63 43 0.54
64 3 0.04
65 2 0.03
66 3 0.04
67 1 0.01
68 26 0.32
69 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.24
Consensus pattern (63 bp):
CTGAGTGTACACCATGTGTACAAGAGAGCTACGACATAAATTAGCTAGGTCACATGGGTCATA
Found at i:106348926 original size:68 final size:66
Alignment explanation
Indices: 106348854--106349025 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
106348844 CATCATGTGT
* * * *
106348854 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
106348917 TGTAG
62 TGTAG
** * *
106348922 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
106348987 AG
65 AG
* * * *
106348989 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
106349026 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:106348959 original size:64 final size:64
Alignment explanation
Indices: 106348878--106349061 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
106348868 AGACATTATG
* * *
106348878 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
106348942 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
106349007 AA
63 AA
* * *
106349009 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
106349062 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:106359525 original size:40 final size:40
Alignment explanation
Indices: 106359455--106359632 Score: 261
Period size: 40 Copynumber: 4.5 Consensus size: 40
106359445 AAGCCAAGTA
* * * * *
106359455 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
106359494 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
106359534 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
106359574 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
106359614 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
106359633 TTATCATCCA
Statistics
Matches: 127, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 12 0.09
40 115 0.91
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:106360669 original size:32 final size:32
Alignment explanation
Indices: 106360628--106360692 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
106360618 ACAAATCTTA
*
106360628 CCTACCATGTAATAAGCATACCAAAATAAACT
1 CCTACCATGTAATAAGCATAACAAAATAAACT
106360660 CCTACCATGTAATAAGCATAACAAAATAAACT
1 CCTACCATGTAATAAGCATAACAAAATAAACT
106360692 C
1 C
106360693 TTTCTATGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.48, C:0.25, G:0.06, T:0.22
Consensus pattern (32 bp):
CCTACCATGTAATAAGCATAACAAAATAAACT
Found at i:106367670 original size:40 final size:40
Alignment explanation
Indices: 106367600--106367777 Score: 270
Period size: 40 Copynumber: 4.5 Consensus size: 40
106367590 AAGCCAAGTA
* * * * *
106367600 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
106367639 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
106367679 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
106367719 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
106367759 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
106367778 TTATCATCCA
Statistics
Matches: 129, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 12 0.09
40 117 0.91
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:106374194 original size:29 final size:29
Alignment explanation
Indices: 106374162--106374267 Score: 124
Period size: 29 Copynumber: 3.7 Consensus size: 29
106374152 ATACCCTCCG
** *
106374162 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATTTTTCC
* * *
106374191 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATTTTTCC
*
106374220 AGCAT-GCACACTTAGTGCCATATATTTCC
1 AGC-TCGCACACTTAGTGCCATATTTTTCC
*
106374249 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
106374268 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 65 0.98
30 1 0.02
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATTTTTCC
Found at i:106382123 original size:29 final size:29
Alignment explanation
Indices: 106382091--106382225 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
106382081 ATACCCTCCG
** * *
106382091 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
106382120 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
106382149 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
106382178 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
106382207 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
106382226 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:106382158 original size:58 final size:58
Alignment explanation
Indices: 106382037--106382226 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
106382027 TACTCGATTT
* * * *** *
106382037 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
106382095 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
106382153 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
106382211 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
106382227 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:106385987 original size:28 final size:29
Alignment explanation
Indices: 106385930--106385991 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 29
106385920 GAAAGCATGT
*
106385930 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
* *
106385959 ATATGAATGAGA-TTGGGCCTAGTGTGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
106385987 ATATG
1 ATATG
106385992 CATGTATGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 19 0.63
29 11 0.37
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.31
Consensus pattern (29 bp):
ATATGAATGAGATTTGGGCCTAATGGGCC
Found at i:106392875 original size:49 final size:49
Alignment explanation
Indices: 106392822--106393095 Score: 439
Period size: 49 Copynumber: 5.7 Consensus size: 49
106392812 GATTCTACGC
* *
106392822 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATAAATATGTGATAAGGCCTAATGGCCGATGT
*
106392871 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATAAATATGTGATAAGGCCTAATGGCCGATGT
* *
106392920 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATAAATATGTGATAAGGCCTAATGGCCGATGT
* *
106392969 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATAAATATGTGATAAGGCCTAATGGCCGATGT
* *
106393018 GATGAATGTGAAAGTGTAT--ATGTGTGATAAGGCCTAATGGCCAATGT
1 GATGAATGTGAAAGTGTATAAATATGTGATAAGGCCTAATGGCCGATGT
106393065 GATGAATGTGAAAGTGTAT-AA-ATGTGATAAG
1 GATGAATGTGAAAGTGTATAAATATGTGATAAG
106393096 TCCCGAAGGG
Statistics
Matches: 215, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
47 54 0.25
48 1 0.00
49 160 0.74
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (49 bp):
GATGAATGTGAAAGTGTATAAATATGTGATAAGGCCTAATGGCCGATGT
Found at i:106395706 original size:40 final size:40
Alignment explanation
Indices: 106395660--106395827 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
106395650 CGGGATATAA
106395660 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
106395700 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
106395740 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * * *
106395780 CCGGATATAATTTCCAGCATAATTGTCTTTGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
106395820 CCGGATAT
1 CCGGATAT
106395828 CATTCAATTT
Statistics
Matches: 106, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 105 0.99
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:106398429 original size:40 final size:40
Alignment explanation
Indices: 106398369--106398588 Score: 227
Period size: 40 Copynumber: 5.5 Consensus size: 40
106398359 TATTCGAATG
* * *
106398369 ATATCCAGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
106398409 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* *
106398449 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
106398489 ATATCCGGGCTAAG-TCCCGAAGGCATTTCTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * * * **
106398529 ATATCCGGGCTAACACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
106398568 ATATCC-GGCTAA-ATTCCGAAG
1 ATATCCGGGCTAAGA-TCCGAAG
106398589 ATGCTTGGGT
Statistics
Matches: 152, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
37 1 0.01
38 12 0.08
39 16 0.11
40 120 0.79
41 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:106398856 original size:22 final size:22
Alignment explanation
Indices: 106398814--106398856 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
106398804 AAAATGTGCA
* *
106398814 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
106398836 TATATGAATGTTATAC-CTTAG
1 TATATGAA-GTTATACACTTAG
106398857 TCGAAACTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:106406713 original size:40 final size:40
Alignment explanation
Indices: 106406653--106406836 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 40
106406643 TATTCGAATG
*
106406653 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
106406693 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
106406733 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
106406773 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
106406813 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
106406837 CTTGTGCGAG
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 122 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:106406786 original size:80 final size:80
Alignment explanation
Indices: 106406653--106406836 Score: 264
Period size: 80 Copynumber: 2.3 Consensus size: 80
106406643 TATTCGAATG
* * *
106406653 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
106406717 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* *
106406733 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
106406798 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
106406813 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
106406837 CTTGTGCGAG
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 91 0.97
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:106407140 original size:22 final size:22
Alignment explanation
Indices: 106407098--106407141 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
106407088 AAAATGTGCA
* *
106407098 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
106407120 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
106407142 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:106408985 original size:23 final size:22
Alignment explanation
Indices: 106408954--106408997 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
106408944 TTGATCATAT
*
106408954 GTTTAGGTATGATTTTAGTTTAA
1 GTTTAGGTATGAATTTA-TTTAA
*
106408977 GTTTTGGTATGAATTTATTTA
1 GTTTAGGTATGAATTTATTTA
106408998 TGAATTGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.25, C:0.00, G:0.20, T:0.55
Consensus pattern (22 bp):
GTTTAGGTATGAATTTATTTAA
Found at i:106416204 original size:44 final size:44
Alignment explanation
Indices: 106416142--106416264 Score: 160
Period size: 46 Copynumber: 2.8 Consensus size: 44
106416132 TAATCGTGCT
*
106416142 GACGCATGTCCTAGACATGTCTTACACTAGCACATCTCGTA-GCC
1 GACGCATGTCCCAGACATGTCTTACACTAGCACATCTCG-AGGCC
* *
106416186 -AGCGCATGTCCCAGACATGTCTGACACTGGCTAACATCTCGAGGCC
1 GA-CGCATGTCCCAGACATGTCTTACACTAGC--ACATCTCGAGGCC
*
106416232 GATGCATGTCCCAGACATGTCTTACACTAGCAC
1 GACGCATGTCCCAGACATGTCTTACACTAGCAC
106416265 TCGTCTCAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 28 0.41
45 1 0.01
46 37 0.54
47 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (44 bp):
GACGCATGTCCCAGACATGTCTTACACTAGCACATCTCGAGGCC
Found at i:106416279 original size:46 final size:43
Alignment explanation
Indices: 106416145--106416312 Score: 135
Period size: 46 Copynumber: 3.7 Consensus size: 43
106416135 TCGTGCTGAC
* *
106416145 GCATGTCCTAGACATGTCTTACACTAGCACATCTCGT-AGCC-AGC
1 GCATGTCCCAGACATGTCTTACACTAGCAC-TCTC-TCAGCCGA-T
* * *
106416189 GCATGTCCCAGACATGTCTGACACTGGCTAACATCTC-GAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGC--AC-TCTCTCA-GCCGAT
106416235 GCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCACTC-TCTC-A-GCCGAT
* * *
106416281 GCCATGTCTCATACATGGTCTTACACTGGCAC
1 G-CATGTCCCAGACAT-GTCTTACACTAGCAC
106416313 ACAAATCTCA
Statistics
Matches: 103, Mismatches: 11, Indels: 16
0.79 0.08 0.12
Matches are distributed among these distances:
43 2 0.02
44 29 0.28
45 1 0.01
46 44 0.43
47 13 0.13
48 14 0.14
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.25
Consensus pattern (43 bp):
GCATGTCCCAGACATGTCTTACACTAGCACTCTCTCAGCCGAT
Found at i:106417282 original size:19 final size:19
Alignment explanation
Indices: 106417258--106417307 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
106417248 GGTATAGAGC
106417258 ACACGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGG
106417277 ACACGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGG
106417296 ACACGCCCGTGT
1 ACACGCCCGTGT
106417308 CCCGAACCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.16, C:0.34, G:0.34, T:0.16
Consensus pattern (19 bp):
ACACGCCCGTGTGCTAGGG
Found at i:106425293 original size:49 final size:48
Alignment explanation
Indices: 106425167--106425306 Score: 169
Period size: 48 Copynumber: 2.9 Consensus size: 48
106425157 TACATGATTC
* *
106425167 CACATATCATCGCCAATGCCATGTCCCAGACTTGGTCTTACGA-TGGCA
1 CACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTAC-ACTGGCA
* * *
106425215 CATATATCATCGCTGATGCCATGTTCCAGACATGG-CTTTACACTGGCA
1 CACATATCATCGCCGATGCCATGTCCCAGACATGGTC-TTACACTGGCA
*
106425263 CACATCTCGGAT-GCCGATGCCATGTCCCAGACATGGTCTTACAC
1 CACATATC--ATCGCCGATGCCATGTCCCAGACATGGTCTTACAC
106425307 GAAATCTCTT
Statistics
Matches: 78, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
47 2 0.03
48 45 0.58
49 28 0.36
50 3 0.04
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (48 bp):
CACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCA
Found at i:106437367 original size:18 final size:18
Alignment explanation
Indices: 106437344--106437386 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
106437334 GAACACACAA
106437344 AGTAAGCTTTAAAAGCTT
1 AGTAAGCTTTAAAAGCTT
*
106437362 AGTAAGCTTTAAGAGCTT
1 AGTAAGCTTTAAAAGCTT
106437380 AGTAAGC
1 AGTAAGC
106437387 CATATGCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (18 bp):
AGTAAGCTTTAAAAGCTT
Found at i:106446570 original size:39 final size:39
Alignment explanation
Indices: 106446508--106446664 Score: 233
Period size: 39 Copynumber: 4.0 Consensus size: 39
106446498 CCGGACATAT
* *
106446508 TTCCAGCACATAGCCTGCGGACCTTAAGTCTGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCTGGATATAA
* * *
106446547 TTCTAGCACATAGCCTGCAGACCTTAAGTCTGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCTGGATATAA
*
106446586 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCTGGATATAA
* **
106446625 TTCCAGCATATAGCCTGCGGACCCTAAGTCCAGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCTGGATATAA
106446664 T
1 T
106446665 CATCACTGAA
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 109 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCTGGATATAA
Found at i:106456124 original size:40 final size:40
Alignment explanation
Indices: 106456058--106456224 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
106456048 AAATTGAATG
* * *
106456058 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
106456097 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
106456137 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
106456177 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
106456217 ATATCCGG
1 ATATCCGG
106456225 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:106464125 original size:40 final size:40
Alignment explanation
Indices: 106464059--106464225 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
106464049 AAATTGAATG
* * *
106464059 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
106464098 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
106464138 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
106464178 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
106464218 ATATCCGG
1 ATATCCGG
106464226 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:106466347 original size:14 final size:15
Alignment explanation
Indices: 106466321--106466351 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
106466311 ACCAATATCT
106466321 ATAGCTCCATATAGA
1 ATAGCTCCATATAGA
106466336 ATAGCTCC-TATAGA
1 ATAGCTCCATATAGA
106466350 AT
1 AT
106466352 TGAAAGAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (15 bp):
ATAGCTCCATATAGA
Found at i:106469487 original size:2 final size:2
Alignment explanation
Indices: 106469475--106469508 Score: 59
Period size: 2 Copynumber: 16.5 Consensus size: 2
106469465 AAGGGTGAAA
106469475 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
106469509 CTGATCATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 29 0.94
3 2 0.06
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:106471089 original size:42 final size:42
Alignment explanation
Indices: 106471042--106471164 Score: 122
Period size: 43 Copynumber: 2.9 Consensus size: 42
106471032 ATTAGGGTTA
*
106471042 ATGAGACTATGTGTAAGAACATATTTGGGATATGGCATCAAT
1 ATGAGACTATATGTAAGAACATATTTGGGATATGGCATCAAT
* * * * *
106471084 ATGAGACT-TCATGTAAGACCATAGTTGGGCTATTGACATCGAT
1 ATGAGACTAT-ATGTAAGAACATATTTGGGATA-TGGCATCAAT
* * * * *
106471127 ACGAGATTACATGTAAGATCATATCTGGGATATGGCAT
1 ATGAGACTATATGTAAGAACATATTTGGGATATGGCAT
106471165 TGGTATGGTA
Statistics
Matches: 64, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
41 1 0.02
42 31 0.48
43 32 0.50
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (42 bp):
ATGAGACTATATGTAAGAACATATTTGGGATATGGCATCAAT
Found at i:106474592 original size:22 final size:22
Alignment explanation
Indices: 106474567--106474612 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
106474557 CCAACTGCTC
106474567 AGCAAGGTAACTATAAAGAACA
1 AGCAAGGTAACTATAAAGAACA
106474589 AGCAAGGTAACTATAAAGAACA
1 AGCAAGGTAACTATAAAGAACA
106474611 AG
1 AG
106474613 TATCCTTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.54, C:0.13, G:0.20, T:0.13
Consensus pattern (22 bp):
AGCAAGGTAACTATAAAGAACA
Done.