Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 340 of 433
Found at i:106490391 original size:40 final size:40
Alignment explanation
Indices: 106490332--106490518 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
106490322 CATTGGAATG
* * * *
106490332 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
106490372 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
106490412 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
106490452 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
106490492 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
106490519 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:106490434 original size:80 final size:80
Alignment explanation
Indices: 106490332--106490485 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
106490322 CATTGGAATG
* * ** *
106490332 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
106490397 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
106490412 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
106490477 ATCGTGCGA
66 ATCGTGCGA
106490486 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:106490500 original size:80 final size:80
Alignment explanation
Indices: 106490336--106490518 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
106490326 GGAATGATAT
* ** * *
106490336 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
106490401 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
106490416 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
106490481 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
106490496 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
106490519 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:106490538 original size:80 final size:80
Alignment explanation
Indices: 106490336--106490553 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
106490326 GGAATGATAT
* * * * * * * *
106490336 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
106490400 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
106490416 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
106490481 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
106490496 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
106490554 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:106505456 original size:40 final size:40
Alignment explanation
Indices: 106505397--106505614 Score: 341
Period size: 40 Copynumber: 5.5 Consensus size: 40
106505387 AAGCCAAGTA
* * * * *
106505397 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
106505436 CCTTTGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
106505476 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
106505516 CCTTCGGGACTTAGCCCGGATATGGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
106505556 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
106505596 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
106505615 TTATCATCCA
Statistics
Matches: 166, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 11 0.07
40 155 0.93
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:106510056 original size:19 final size:19
Alignment explanation
Indices: 106510032--106510069 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
106510022 TTCGCAACTG
106510032 ATAATAACCCGATCTCAAA
1 ATAATAACCCGATCTCAAA
106510051 ATAATAACCCGATCTCAAA
1 ATAATAACCCGATCTCAAA
106510070 TCTATCTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.26, G:0.05, T:0.21
Consensus pattern (19 bp):
ATAATAACCCGATCTCAAA
Found at i:106513810 original size:39 final size:40
Alignment explanation
Indices: 106513685--106513900 Score: 341
Period size: 40 Copynumber: 5.5 Consensus size: 40
106513675 AAGCCAAGTA
* * * * *
106513685 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
106513724 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
106513764 CCTTCGGGACTTAGCCCGGATATAGTAACTC-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
106513803 CCTTCGGGACTTAGCCCGGATAT-GTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
106513842 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
106513882 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
106513901 TTATCATCCA
Statistics
Matches: 166, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
38 7 0.04
39 74 0.45
40 85 0.51
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:106513893 original size:118 final size:118
Alignment explanation
Indices: 106513685--106513900 Score: 346
Period size: 118 Copynumber: 1.8 Consensus size: 118
106513675 AAGCCAAGTA
* * *
106513685 CCTTCGGGATTTAACCGGATATAGCTACTCGCTCGAATACCTTCGGGACATAGCCCGGATATAGT
1 CCTTCGGGACTTAACCGGATATAGCTACTCGCACAAATACCTTCGGGACATAGCCCGGATATAGT
106513750 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCCACAAATG
66 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCCACAAATG
* * *
106513803 CCTTCGGGACTTAGCCCGGATAT-G-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTA-ACCGGATATAGCT-ACTCGCACAAATACCTTCGGGACATAGCCCGGATATA
106513866 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
64 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
106513901 TTATCATCCA
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
117 1 0.01
118 81 0.90
119 8 0.09
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (118 bp):
CCTTCGGGACTTAACCGGATATAGCTACTCGCACAAATACCTTCGGGACATAGCCCGGATATAGT
AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCCACAAATG
Found at i:106515550 original size:40 final size:40
Alignment explanation
Indices: 106515505--106515672 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
106515495 CGGAATACAA
106515505 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
106515545 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
106515585 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * *
106515625 CCGGATATAA-TTTTCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
106515665 CCGGATAT
1 CCGGATAT
106515673 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 2 0.02
40 101 0.98
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:106515655 original size:80 final size:80
Alignment explanation
Indices: 106515521--106515670 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 80
106515511 ATAACCACGT
* * *
106515521 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACAAATGCCTTCGGGACTTAGCC
106515586 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
106515601 GCACAATTGCCTTCGGGTCTTAACCCGGATATAAT-TTTCAGCATAAATGTCTTCGGGACTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACAAATGCCTTCGGGACTTAGC
106515665 CCGGAT
65 CCGGAT
106515671 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
79 2 0.03
80 58 0.97
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACAAATGCCTTCGGGACTTAGCC
CGGATGTAGCCACTA
Found at i:106517143 original size:28 final size:28
Alignment explanation
Indices: 106517078--106517178 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
106517068 ATAGTGAATC
*
106517078 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
106517107 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
106517135 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
106517165 CGCACACTTAGTGC
1 CGCACACTTAGTGC
106517179 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:106525914 original size:40 final size:40
Alignment explanation
Indices: 106525869--106526033 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
106525859 CGGAATACAA
106525869 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* *
106525909 CCGGATAGAA--ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
106525947 CCGGATGTAGCCACTAGCAC-AATTGCCTTC-GGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
106525986 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
106526026 CCGGATAT
1 CCGGATAT
106526034 CATTCAATTT
Statistics
Matches: 103, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
37 1 0.01
38 33 0.32
39 29 0.28
40 40 0.39
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:106525990 original size:39 final size:39
Alignment explanation
Indices: 106525885--106525991 Score: 139
Period size: 38 Copynumber: 2.8 Consensus size: 39
106525875 ATAACCACGT
*
106525885 GCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAAACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAAACTA
**
106525923 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAAACTA
*
106525963 GCAC-AATTGCCTTC-GGTCTTAACCCGGAT
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGAT
106525992 ATAATTTCCA
Statistics
Matches: 62, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
38 29 0.47
39 16 0.26
40 17 0.27
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.23
Consensus pattern (39 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAAACTA
Found at i:106535089 original size:40 final size:40
Alignment explanation
Indices: 106535044--106535211 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
106535034 CGGAATACAA
106535044 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
106535084 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
106535124 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
106535164 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
106535204 CCGGATAT
1 CCGGATAT
106535212 CATTCAATTT
Statistics
Matches: 105, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 104 0.99
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:106541284 original size:46 final size:46
Alignment explanation
Indices: 106541217--106541385 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
106541207 AACTCGCCCC
* *
106541217 TAAGTGAACTCAGACTGAACTCAACGAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGGCGTTCGCATCCA
* *
106541263 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
106541311 TCA-CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
106541356 TAAGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
106541386 TGGATGCTCA
Statistics
Matches: 99, Mismatches: 14, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 4 0.04
46 52 0.53
47 27 0.27
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:106541351 original size:93 final size:93
Alignment explanation
Indices: 106541222--106541392 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
106541212 GCCCCTAAGT
* * * *
106541222 GAACTCAGACTGAACTCAACGAGCTTGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
106541287 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
106541315 GAACTCGGACTCAACTCAACAAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACAAGCTT-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
106541379 ACGAGTTTGGATGC
65 ACGAGTTCGGATGC
106541393 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACAAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:106541846 original size:30 final size:30
Alignment explanation
Indices: 106541812--106541871 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
106541802 ATTCAATACG
106541812 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
106541842 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
106541872 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:106546554 original size:39 final size:40
Alignment explanation
Indices: 106546445--106546715 Score: 457
Period size: 39 Copynumber: 6.9 Consensus size: 40
106546435 TTGAGAGTTA
106546445 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
106546485 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
106546525 TATATCCGGGCTAA-TCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
106546564 TATAT-CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
106546603 TATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
106546642 TA-A-CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
106546680 TATATCCGGGCTAA-ACCTCGAAG-GCATTCGTGCTGG
1 TATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTGG
106546716 AATTATGAGG
Statistics
Matches: 221, Mismatches: 4, Indels: 13
0.93 0.02 0.05
Matches are distributed among these distances:
37 2 0.01
38 41 0.19
39 109 0.49
40 69 0.31
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:106546788 original size:29 final size:28
Alignment explanation
Indices: 106546753--106546877 Score: 119
Period size: 29 Copynumber: 4.4 Consensus size: 28
106546743 CTTCAACCGA
* *
106546753 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATC-GTAATTGAG
* * *
106546782 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
*
106546810 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
* * *
106546839 GCACTATGTGTGCGAGTTCTTTAATCGA-
1 GCACTATGTGTGCGAGATC-GTAATTGAG
106546867 GCACTATGTGT
1 GCACTATGTGT
106546878 ACGAAATCAG
Statistics
Matches: 79, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
28 34 0.43
29 45 0.57
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGTAATTGAG
Found at i:106546811 original size:57 final size:57
Alignment explanation
Indices: 106546721--106546877 Score: 233
Period size: 57 Copynumber: 2.8 Consensus size: 57
106546711 GCTGGAATTA
* * * * *
106546721 TGAGGCACTGTGTGTGCAAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAAT
* **
106546778 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAAT
*
106546835 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCACTATGTGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGT
106546878 ACGAAATCAG
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 91 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAAT
Found at i:106546822 original size:28 final size:27
Alignment explanation
Indices: 106546725--106546877 Score: 135
Period size: 28 Copynumber: 5.4 Consensus size: 27
106546715 GAATTATGAG
* * * *
106546725 GCACTGTGTGTGCAAGCTCTTCAACCGA
1 GCACTATGTGTGCGAGTTCTT-AATCGA
* * * * *
106546753 GCACTATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTC-TTAATCGA
106546781 GGCACTATGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTT-AATCGA
** *
106546810 GCACTATGTGTGCGAGATTGGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTAATCGA
106546838 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTC-TTAATCGA
106546867 GCACTATGTGT
1 GCACTATGTGT
106546878 ACGAAATCAG
Statistics
Matches: 101, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
28 54 0.53
29 47 0.47
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTATGTGTGCGAGTTCTTAATCGA
Found at i:106576614 original size:92 final size:93
Alignment explanation
Indices: 106576500--106576669 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
106576490 GCCCCTAAGT
* *
106576500 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
106576565 CGAGTT-GGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
106576592 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
106576657 CGAGTTCGGATGC
66 CGAGTTCGGATGC
106576670 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 68 0.92
93 6 0.08
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:106576666 original size:46 final size:46
Alignment explanation
Indices: 106576495--106576666 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
106576485 AACCCGCCCC
* * *
106576495 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
106576541 TAAGTGAACTCGGACTCAACTCAACGAGTT-GGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
106576588 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
106576633 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
106576667 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 9, Indels: 20
0.79 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 83 0.78
47 5 0.05
48 2 0.02
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:106577118 original size:30 final size:30
Alignment explanation
Indices: 106577084--106577143 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
106577074 ATTTAATACG
106577084 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
106577114 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
106577144 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:106583057 original size:40 final size:40
Alignment explanation
Indices: 106582930--106583059 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
106582920 ATGCTGGAAA
* *
106582930 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
106582970 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
106583010 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
106583050 TTATATCCGG
1 TTATATCCGG
106583060 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:106591116 original size:40 final size:40
Alignment explanation
Indices: 106590989--106591118 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
106590979 ATGCTGGAAA
* *
106590989 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
106591029 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
106591069 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
106591109 TTATATCCGG
1 TTATATCCGG
106591119 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:106595946 original size:30 final size:30
Alignment explanation
Indices: 106595912--106595971 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
106595902 ATTTAATGCG
106595912 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
106595942 AACTTTTGCATAATTTCACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
106595972 GGCTCGGGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:106603015 original size:93 final size:91
Alignment explanation
Indices: 106602858--106603026 Score: 302
Period size: 93 Copynumber: 1.8 Consensus size: 91
106602848 GCCCCTAAGT
*
106602858 GAACTCGGACTCAACTCAACGAGCTCGGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACGAGCTCGGATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
106602923 AGTTCGGATGCCTAGTTACATCTCAC
66 AGTTCGGATGCCTAGTTACATCTCAC
*
106602949 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
106603014 CGAGTTCGGATGC
64 CGAGTTCGGATGC
106603027 TCAACCATCC
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
91 27 0.36
93 47 0.64
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCAC
Found at i:106603042 original size:46 final size:44
Alignment explanation
Indices: 106602853--106603034 Score: 190
Period size: 44 Copynumber: 4.0 Consensus size: 44
106602843 AACCCGCCCC
* * * *
106602853 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCGCAACCA
106602897 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCGC-A---ACCA
* * * *
106602943 TCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCGCAACCA
*
106602990 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCGCAACCA
106603034 T
1 T
106603035 CCTAGTGACA
Statistics
Matches: 114, Mismatches: 13, Indels: 22
0.77 0.09 0.15
Matches are distributed among these distances:
43 1 0.01
44 44 0.39
45 2 0.02
46 30 0.26
47 30 0.26
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCGCAACCA
Found at i:106608761 original size:57 final size:56
Alignment explanation
Indices: 106608688--106608799 Score: 206
Period size: 57 Copynumber: 2.0 Consensus size: 56
106608678 CTTGTTCAAT
*
106608688 ACATACATTGTTTGAATTGACCCATAATTCATCCCTTTGGTAAAATTACCTTTTTAA
1 ACATACATTGTTTGAATTGACCCATAATTCAT-ACTTTGGTAAAATTACCTTTTTAA
106608745 ACATACATTGTTTGAATTGACCCATAATTCATACTTTGGTAAAATTACCTTTTTA
1 ACATACATTGTTTGAATTGACCCATAATTCATACTTTGGTAAAATTACCTTTTTA
106608800 CCCCTAACTT
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
56 22 0.41
57 32 0.59
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (56 bp):
ACATACATTGTTTGAATTGACCCATAATTCATACTTTGGTAAAATTACCTTTTTAA
Found at i:106608778 original size:28 final size:28
Alignment explanation
Indices: 106608689--106608778 Score: 67
Period size: 28 Copynumber: 3.2 Consensus size: 28
106608679 TTGTTCAATA
106608689 CATACATTGTTTGAATTGACCCATAATT
1 CATACATTGTTTGAATTGACCCATAATT
* * * ** ** *
106608717 CATCCCTTTGGTAAAATT-ACCTTTTTAA-A
1 CAT-ACATTGTTTGAATTGACC--CATAATT
106608746 CATACATTGTTTGAATTGACCCATAATT
1 CATACATTGTTTGAATTGACCCATAATT
106608774 CATAC
1 CATAC
106608779 TTTGGTAAAA
Statistics
Matches: 41, Mismatches: 16, Indels: 10
0.61 0.24 0.15
Matches are distributed among these distances:
27 3 0.07
28 20 0.49
29 15 0.37
30 3 0.07
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.39
Consensus pattern (28 bp):
CATACATTGTTTGAATTGACCCATAATT
Found at i:106608790 original size:28 final size:28
Alignment explanation
Indices: 106608702--106608790 Score: 65
Period size: 28 Copynumber: 3.1 Consensus size: 28
106608692 ACATTGTTTG
*
106608702 AATTGACCCATAATTCATCCCTTTGGTAA
1 AATTGACCCATAATTCAT-ACTTTGGTAA
** * * * **
106608731 AATT-ACCTTTTTAA-ACATACATTGTTTG
1 AATTGACC--CATAATTCATACTTTGGTAA
106608759 AATTGACCCATAATTCATACTTTGGTAA
1 AATTGACCCATAATTCATACTTTGGTAA
106608787 AATT
1 AATT
106608791 ACCTTTTTAC
Statistics
Matches: 41, Mismatches: 15, Indels: 9
0.63 0.23 0.14
Matches are distributed among these distances:
27 3 0.07
28 25 0.61
29 10 0.24
30 3 0.07
ACGTcount: A:0.34, C:0.18, G:0.09, T:0.39
Consensus pattern (28 bp):
AATTGACCCATAATTCATACTTTGGTAA
Found at i:106614738 original size:26 final size:26
Alignment explanation
Indices: 106614709--106614761 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
106614699 TTTACAGTTT
106614709 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
106614735 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
106614761 T
1 T
106614762 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:106618826 original size:45 final size:45
Alignment explanation
Indices: 106618741--106618900 Score: 182
Period size: 45 Copynumber: 3.6 Consensus size: 45
106618731 CTGGCATTTC
* * * * *
106618741 GCCTGCTAGGATC-GAGGCCCGATTA-TCATTTCATCAGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCTCACCAGCATTATA
*
106618785 GCCTGCTAGGCTCGAAA-GCCCGAATAGTATCTCACCGGCATTATA
1 GCCTGCTAGGCTC-AAAGGCCCGAATAGTATCTCACCAGCATTATA
* * * * *
106618830 GCCTACTAGGCCCAAAGGCCCGAGTAGTGTCTCACCAGCATAATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATA
106618875 GCCTGCTAGGCTCAAAGGCCCGAATA
1 GCCTGCTAGGCTCAAAGGCCCGAATA
106618901 TAATACCAGC
Statistics
Matches: 97, Mismatches: 15, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
44 15 0.15
45 80 0.82
46 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (45 bp):
GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATA
Found at i:106618942 original size:38 final size:38
Alignment explanation
Indices: 106618893--106619090 Score: 236
Period size: 38 Copynumber: 5.2 Consensus size: 38
106618883 GGCTCAAAGG
* * * * *
106618893 CCCGAATATAATACCAGCACTAGGCATGCGAGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
106618931 CCAGGATATAATACCAGCACGAAGCCTGCGGGAATTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
106618969 CCCGGATATATTACCAGCACGAAGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
106619007 CCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * **
106619045 CCCGGATATAATTCCAGCA-TATAGCCTGCGGTCTTTAA
1 CCCGGATATAATACCAGCACGA-AGCCTGCGGGATTTAA
*
106619083 GCCGGATA
1 CCCGGATA
106619091 CAAATATCGT
Statistics
Matches: 140, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
37 1 0.01
38 139 0.99
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:106619468 original size:43 final size:44
Alignment explanation
Indices: 106619360--106619488 Score: 163
Period size: 43 Copynumber: 2.9 Consensus size: 44
106619350 ACATAACATT
**
106619360 TCATTTCACCGGCATTATAGCCTGCTAAGCTCAAAGGCTTGAATAA
1 TCATTTCACCGGCATTATAGCCTGCTAAGCTCAAA-GCCCG-ATAA
* *
106619406 T-ATTTCACCGGCATCATAGCCTACTAAGCTCAAAGCCCGAT-A
1 TCATTTCACCGGCATTATAGCCTGCTAAGCTCAAAGCCCGATAA
* * *
106619448 TCATTTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGA
1 TCATTTCACCGGCATTATAGCCTGCTAAGCTCAAAGCCCGA
106619489 ATACACATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
42 2 0.03
43 36 0.49
44 3 0.04
45 31 0.42
46 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (44 bp):
TCATTTCACCGGCATTATAGCCTGCTAAGCTCAAAGCCCGATAA
Found at i:106626753 original size:26 final size:26
Alignment explanation
Indices: 106626724--106626776 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
106626714 TTTACAGTTT
106626724 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
106626750 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
106626776 T
1 T
106626777 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:106627181 original size:14 final size:14
Alignment explanation
Indices: 106627152--106627190 Score: 69
Period size: 14 Copynumber: 2.7 Consensus size: 14
106627142 CTGTTATCTG
106627152 AATGGGCTTCGGCCC
1 AATGGGCTT-GGCCC
106627167 AATGGGCTTGGCCC
1 AATGGGCTTGGCCC
106627181 AATGGGCTTG
1 AATGGGCTTG
106627191 AGCTGACTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 15 0.62
15 9 0.38
ACGTcount: A:0.15, C:0.26, G:0.36, T:0.23
Consensus pattern (14 bp):
AATGGGCTTGGCCC
Found at i:106635826 original size:39 final size:40
Alignment explanation
Indices: 106635718--106635902 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
106635708 TCGAATGATG
* * *
106635718 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
106635757 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
106635798 TCCGGGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
106635837 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
106635876 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
106635903 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:106635924 original size:79 final size:79
Alignment explanation
Indices: 106635771--106635935 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
106635761 GGACTAAGAT
* **
106635771 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCAAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
* *
106635836 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* * *
106635850 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-C
* *
106635913 TATATC-CGGTTAAATT
63 TAAATCTCGGTTAAATC
106635929 CCGAAGG
1 CCGAAGG
106635936 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.67
80 22 0.30
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
ATCTCGGTTAAATC
Found at i:106639345 original size:27 final size:27
Alignment explanation
Indices: 106639279--106639374 Score: 77
Period size: 27 Copynumber: 3.6 Consensus size: 27
106639269 GAAGTGTATT
* ** *
106639279 ATACTGGCGGCTTCACCACATTTACTG
1 ATACTGGCAGCTTTGCCACATATACTG
* * **
106639306 TTATTGGTGGCTTTGCCACATATACTG
1 ATACTGGCAGCTTTGCCACATATACTG
* *
106639333 ATACTGGCAGCTTTGCTAC-GATACTG
1 ATACTGGCAGCTTTGCCACATATACTG
* *
106639359 TTACTGGCAGCCTTGC
1 ATACTGGCAGCTTTGC
106639375 TGCGATATTG
Statistics
Matches: 55, Mismatches: 14, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
26 20 0.36
27 35 0.64
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (27 bp):
ATACTGGCAGCTTTGCCACATATACTG
Found at i:106639363 original size:26 final size:26
Alignment explanation
Indices: 106639327--106639381 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
106639317 TTTGCCACAT
*
106639327 ATACTGATACTGGCAGCTTTGCTACG
1 ATACTGATACTGGCAGCCTTGCTACG
* *
106639353 ATACTGTTACTGGCAGCCTTGCTGCG
1 ATACTGATACTGGCAGCCTTGCTACG
106639379 ATA
1 ATA
106639382 TTGGTGTGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.31
Consensus pattern (26 bp):
ATACTGATACTGGCAGCCTTGCTACG
Found at i:106641509 original size:40 final size:40
Alignment explanation
Indices: 106641426--106641683 Score: 367
Period size: 40 Copynumber: 6.5 Consensus size: 40
106641416 AAGCCAAGTA
* * * * * *
106641426 CCTTCGGGATTTA-ACCAGATATAGCT-ACTCGCTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
106641465 CCTTCGGGACATAGCCTGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
106641505 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
106641545 CCTTCGGGACTTAGCCCGGATATGGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
106641585 CCTTCGGGACTTAGCCTGGATATGGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
106641625 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
106641665 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
106641684 TTATCATCCA
Statistics
Matches: 197, Mismatches: 20, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
39 12 0.06
40 185 0.94
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:106646866 original size:31 final size:29
Alignment explanation
Indices: 106646817--106647061 Score: 124
Period size: 29 Copynumber: 8.4 Consensus size: 29
106646807 GTTGTAACAG
* *
106646817 TCCC-TTTCATATTTGATGGTTGAAACCA
1 TCCCTTTTCATAATTGATGGTCGAAACCA
**
106646845 TCCCTTTTTCATTAATTGATGGTCGTCACCA
1 TCCC-TTTTCA-TAATTGATGGTCGAAACCA
* ***
106646876 TCCCTTTTCATAGTTGATGGTCGTCTCCA
1 TCCCTTTTCATAATTGATGGTCGAAACCA
* * * * *
106646905 TCCCTTTTCACAATCGATAG-CTAAAGCTA
1 TCCCTTTTCATAATTGATGGTCGAAA-CCA
* * *
106646934 TCCCTTTTCAT-ATTCGATAG-CTGAAGCTA
1 TCCCTTTTCATAATT-GATGGTC-GAAACCA
* ** * * **
106646963 TCCTTTTTCATTTTTTATGGTTGTCACCA
1 TCCCTTTTCATAATTGATGGTCGAAACCA
* *
106646992 TCCCTTTTCATAATTGACGGTC-ATCACCA
1 TCCCTTTTCATAATTGATGGTCGA-AACCA
* * * *
106647021 TCCCTTTTCATAATCGATAG-CCAAAGCTA
1 TCCCTTTTCATAATTGATGGTCGAAA-CCA
106647050 TCCCTTTTCATA
1 TCCCTTTTCATA
106647062 TTCGATTATC
Statistics
Matches: 166, Mismatches: 40, Indels: 21
0.73 0.18 0.09
Matches are distributed among these distances:
28 9 0.05
29 123 0.74
30 15 0.09
31 19 0.11
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.40
Consensus pattern (29 bp):
TCCCTTTTCATAATTGATGGTCGAAACCA
Found at i:106646900 original size:29 final size:29
Alignment explanation
Indices: 106646817--106647034 Score: 142
Period size: 29 Copynumber: 7.5 Consensus size: 29
106646807 GTTGTAACAG
* * **
106646817 TCCC-TTTCATATTTGATGGTTGAAACCA
1 TCCCTTTTCATAATTGATGGTCGTCACCA
106646845 TCCCTTTTTCATTAATTGATGGTCGTCACCA
1 TCCC-TTTTCA-TAATTGATGGTCGTCACCA
* *
106646876 TCCCTTTTCATAGTTGATGGTCGTCTCCA
1 TCCCTTTTCATAATTGATGGTCGTCACCA
* * * * *
106646905 TCCCTTTTCACAATCGATAG-C-TAAAGCTA
1 TCCCTTTTCATAATTGATGGTCGT-CA-CCA
* * *
106646934 TCCCTTTTCAT-ATTCGATAG-C-TGAAGCTA
1 TCCCTTTTCATAATT-GATGGTCGT-CA-CCA
* ** * *
106646963 TCCTTTTTCATTTTTTATGGTTGTCACCA
1 TCCCTTTTCATAATTGATGGTCGTCACCA
* *
106646992 TCCCTTTTCATAATTGACGGTCATCACCA
1 TCCCTTTTCATAATTGATGGTCGTCACCA
106647021 TCCCTTTTCATAAT
1 TCCCTTTTCATAAT
106647035 CGATAGCCAA
Statistics
Matches: 151, Mismatches: 30, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
27 1 0.01
28 7 0.05
29 109 0.72
30 14 0.09
31 20 0.13
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.41
Consensus pattern (29 bp):
TCCCTTTTCATAATTGATGGTCGTCACCA
Found at i:106647022 original size:116 final size:117
Alignment explanation
Indices: 106646847--106647067 Score: 354
Period size: 116 Copynumber: 1.9 Consensus size: 117
106646837 TGAAACCATC
* * * *
106646847 CCTTTTTCATTAATTGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCTCCATCCCTTT
1 CCTTTTTCATTAATTGATGGTCGTCACCATCCCTTTTCATAATTGACGGTCATCACCATCCCTTT
*
106646912 TCACAATCGATAGCTAAAGCTATCCCTTTTCATATTCGATAGCTGAAGCTAT
66 TCACAATCGATAGCCAAAGCTATCCCTTTTCATATTCGATAGCTGAAGCTAT
* * *
106646964 CCTTTTTCATT-TTTTATGGTTGTCACCATCCCTTTTCATAATTGACGGTCATCACCATCCCTTT
1 CCTTTTTCATTAATTGATGGTCGTCACCATCCCTTTTCATAATTGACGGTCATCACCATCCCTTT
*
106647028 TCATAATCGATAGCCAAAGCTATCCCTTTTCATATTCGAT
66 TCACAATCGATAGCCAAAGCTATCCCTTTTCATATTCGAT
106647068 TATCGTTGAT
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
116 84 0.88
117 11 0.12
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.40
Consensus pattern (117 bp):
CCTTTTTCATTAATTGATGGTCGTCACCATCCCTTTTCATAATTGACGGTCATCACCATCCCTTT
TCACAATCGATAGCCAAAGCTATCCCTTTTCATATTCGATAGCTGAAGCTAT
Found at i:106647274 original size:18 final size:18
Alignment explanation
Indices: 106647253--106647287 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
106647243 CCCTATCTTG
106647253 ATTTAAATTAATAATTTC
1 ATTTAAATTAATAATTTC
* *
106647271 ATTTAATTTATTAATTT
1 ATTTAAATTAATAATTT
106647288 AGATAGTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTAAATTAATAATTTC
Found at i:106659292 original size:15 final size:15
Alignment explanation
Indices: 106659251--106659313 Score: 63
Period size: 15 Copynumber: 4.2 Consensus size: 15
106659241 GAAAACCAGA
*
106659251 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
* * *
106659266 ACAGAGGAATCCAAG
1 ATAAAGAAATCCAAG
*
106659281 ATAAAGATATCCAAG
1 ATAAAGAAATCCAAG
* *
106659296 GTACAGAAATCCAAG
1 ATAAAGAAATCCAAG
106659311 ATA
1 ATA
106659314 CCATATCATA
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.51, C:0.16, G:0.17, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:106664668 original size:3 final size:3
Alignment explanation
Indices: 106664660--106664688 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
106664650 TTACAATGAA
106664660 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
106664689 CATAATGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:106665747 original size:19 final size:19
Alignment explanation
Indices: 106665711--106665747 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
106665701 CAGCTCATCA
*
106665711 GGCCCATTTAGCCCATTCC
1 GGCCCATTTAGCCAATTCC
*
106665730 GGCCCATTTGGCCAATTC
1 GGCCCATTTAGCCAATTC
106665748 TCAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.38, G:0.19, T:0.27
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCC
Found at i:106665895 original size:24 final size:24
Alignment explanation
Indices: 106665849--106665895 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
106665839 CCTAACTTTC
* * *
106665849 GGCTTTTTGGCATTTTGGTTTTTT
1 GGCTTTTCGGCATTTCGGCTTTTT
106665873 GGCTTTTCGGCATTTCGGCTTTT
1 GGCTTTTCGGCATTTCGGCTTTT
106665896 GCTGATTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.04, C:0.15, G:0.26, T:0.55
Consensus pattern (24 bp):
GGCTTTTCGGCATTTCGGCTTTTT
Found at i:106668233 original size:44 final size:43
Alignment explanation
Indices: 106668089--106668291 Score: 259
Period size: 44 Copynumber: 4.7 Consensus size: 43
106668079 AGCTCGTACA
* * *
106668089 ATGCCAATGTCCCAGACATGGTCTTACATGT-AATCAAATATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAA-GTCG
* * * *
106668132 ATTCCACTGTCCCAGACAGGGTCTTACACG-AAATCAAA-TATG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAAGT-CG
*
106668174 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCATAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCA-AAGTCG
106668218 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCA-AAGTCG
* *
106668262 ATGCCAATGTCCTAGACGTGGTCTTACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACG
106668292 ATAACACATA
Statistics
Matches: 141, Mismatches: 14, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
41 1 0.01
42 26 0.18
43 39 0.28
44 74 0.52
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAAGTCG
Found at i:106669401 original size:13 final size:13
Alignment explanation
Indices: 106669383--106669407 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
106669373 ACAAACGATA
106669383 AAATTTTCACACG
1 AAATTTTCACACG
106669396 AAATTTTCACAC
1 AAATTTTCACAC
106669408 ATACTAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:106685548 original size:14 final size:15
Alignment explanation
Indices: 106685512--106685549 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
106685502 CTTTGTGTTA
106685512 AGTTTTTATTTAGTTT
1 AGTTTTT-TTTAGTTT
106685528 AGTTTTTTTTA-TTT
1 AGTTTTTTTTAGTTT
*
106685542 CGTTTTTT
1 AGTTTTTT
106685550 GTGAGGAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.48
15 4 0.19
16 7 0.33
ACGTcount: A:0.13, C:0.03, G:0.11, T:0.74
Consensus pattern (15 bp):
AGTTTTTTTTAGTTT
Found at i:106689190 original size:40 final size:40
Alignment explanation
Indices: 106689053--106689279 Score: 314
Period size: 40 Copynumber: 5.5 Consensus size: 40
106689043 GATGATAACC
106689053 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATGATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT--CCG
*
106689096 GGC-AAGTCCCGAAGGCATTTGTGTGAGTTACTATGATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT--CCG
*
106689138 GGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
106689178 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* *
106689218 GGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
* *
106689258 GGCTAAATCCCGAAGGTATTTG
1 GGCTAAGTCCCGAAGGCATTTG
106689280 GTCTGGGAAT
Statistics
Matches: 173, Mismatches: 9, Indels: 7
0.92 0.05 0.04
Matches are distributed among these distances:
39 2 0.01
40 94 0.54
42 43 0.25
43 34 0.20
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:106697096 original size:40 final size:40
Alignment explanation
Indices: 106697033--106697249 Score: 368
Period size: 40 Copynumber: 5.5 Consensus size: 40
106697023 CGGATGATAA
106697033 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
106697072 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
106697112 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
106697152 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
106697192 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
106697232 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
106697250 TACTTGGTTT
Statistics
Matches: 171, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
39 28 0.16
40 143 0.84
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:106702172 original size:16 final size:17
Alignment explanation
Indices: 106702143--106702174 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
106702133 AAGGTCACTT
106702143 TCATAATGATCATGAAC
1 TCATAATGATCATGAAC
106702160 TCATAAT-ATCATGAA
1 TCATAATGATCATGAA
106702175 GCCAATGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (17 bp):
TCATAATGATCATGAAC
Found at i:106702450 original size:42 final size:42
Alignment explanation
Indices: 106702324--106702489 Score: 181
Period size: 42 Copynumber: 3.9 Consensus size: 42
106702314 AGTAACATGC
* * **
106702324 CAATGCCATATCCCAGATATGGTCTTACATGGGATCACATAT
1 CAATGCCATATCCCAGACATGGTCTTACACGAAATCACATAT
* * * *
106702366 CGATGCCGATAGCCCAG-CTATGGTCTTACACGATATCTCATAT
1 CAATGCC-ATATCCCAGAC-ATGGTCTTACACGAAATCACATAT
* * *
106702409 CAATGCCATGTCCCAGACATGGTCTTATACAAAATCACATAT
1 CAATGCCATATCCCAGACATGGTCTTACACGAAATCACATAT
* * *
106702451 CGATGCCATATCCTAGATATGGTCTTACACGAAATCACA
1 CAATGCCATATCCCAGACATGGTCTTACACGAAATCACA
106702490 CATAACCCTA
Statistics
Matches: 101, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
42 66 0.65
43 35 0.35
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (42 bp):
CAATGCCATATCCCAGACATGGTCTTACACGAAATCACATAT
Found at i:106702450 original size:85 final size:84
Alignment explanation
Indices: 106702324--106702482 Score: 219
Period size: 85 Copynumber: 1.9 Consensus size: 84
106702314 AGTAACATGC
* **** *
106702324 CAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCGATGCCGATAGCCCAGCTATGG
1 CAATGCCATATCCCAGACATGGTCTTACACAAAATCACATATCGATGCC-ATAGCCCAGATATGG
106702389 TCTTACACGATATCTCATAT
65 TCTTACACGATATCTCATAT
* * * *
106702409 CAATGCCATGTCCCAGACATGGTCTTATACAAAATCACATATCGATGCCATATCCTAGATATGGT
1 CAATGCCATATCCCAGACATGGTCTTACACAAAATCACATATCGATGCCATAGCCCAGATATGGT
106702474 CTTACACGA
66 CTTACACGA
106702483 AATCACACAT
Statistics
Matches: 64, Mismatches: 10, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
84 22 0.34
85 42 0.66
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (84 bp):
CAATGCCATATCCCAGACATGGTCTTACACAAAATCACATATCGATGCCATAGCCCAGATATGGT
CTTACACGATATCTCATAT
Found at i:106713832 original size:18 final size:16
Alignment explanation
Indices: 106713808--106713844 Score: 58
Period size: 15 Copynumber: 2.3 Consensus size: 16
106713798 CGCTACTACC
106713808 CAAAACAACAGAGTTAA
1 CAAAA-AACAGAGTTAA
106713825 C-AAAAACAGAGTTAA
1 CAAAAAACAGAGTTAA
106713840 CAAAA
1 CAAAA
106713845 CGAAGCCGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 12 0.63
16 6 0.32
17 1 0.05
ACGTcount: A:0.62, C:0.16, G:0.11, T:0.11
Consensus pattern (16 bp):
CAAAAAACAGAGTTAA
Found at i:106713834 original size:15 final size:15
Alignment explanation
Indices: 106713814--106713844 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
106713804 TACCCAAAAC
106713814 AACAGAGTTAACAAA
1 AACAGAGTTAACAAA
106713829 AACAGAGTTAACAAA
1 AACAGAGTTAACAAA
106713844 A
1 A
106713845 CGAAGCCGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.13, G:0.13, T:0.13
Consensus pattern (15 bp):
AACAGAGTTAACAAA
Found at i:106719253 original size:22 final size:23
Alignment explanation
Indices: 106719210--106719254 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
106719200 AAGTAGTTTC
* *
106719210 AATATATTCTAATCATACTTTTA
1 AATATATTCTAAACAGACTTTTA
*
106719233 AATA-ATTCTAAACAGAGTTTTA
1 AATATATTCTAAACAGACTTTTA
106719255 GAAACTTACA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.42, C:0.11, G:0.04, T:0.42
Consensus pattern (23 bp):
AATATATTCTAAACAGACTTTTA
Found at i:106724318 original size:41 final size:41
Alignment explanation
Indices: 106724273--106724357 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
106724263 TCGCTTTGAA
*
106724273 ACTAATCTTTGTATCATACTAGCTCAAGGGTCATCTATTAT
1 ACTAATCTTTCTATCATACTAGCTCAAGGGTCATCTATTAT
106724314 ACTAATCTTTCTATCATACTAGCTCAAGGGTCATCTATTAT
1 ACTAATCTTTCTATCATACTAGCTCAAGGGTCATCTATTAT
106724355 ACT
1 ACT
106724358 TTCATTTTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.39
Consensus pattern (41 bp):
ACTAATCTTTCTATCATACTAGCTCAAGGGTCATCTATTAT
Found at i:106729456 original size:25 final size:25
Alignment explanation
Indices: 106729418--106729474 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
106729408 ATATGACAAG
106729418 CCTAATTAAATTTTTGGCTTTTATA
1 CCTAATTAAATTTTTGGCTTTTATA
*
106729443 CCTAATTAATTTTTTGGCTTTTATA
1 CCTAATTAAATTTTTGGCTTTTATA
*
106729468 CTTAATT
1 CCTAATT
106729475 TATGACTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.26, C:0.12, G:0.07, T:0.54
Consensus pattern (25 bp):
CCTAATTAAATTTTTGGCTTTTATA
Found at i:106736040 original size:16 final size:17
Alignment explanation
Indices: 106736008--106736040 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
106735998 CCTTGGGCCA
*
106736008 CTCCTCTGGTCAGGTGG
1 CTCCTCTGGTCACGTGG
106736025 CTCCTC-GGTCACGTGG
1 CTCCTCTGGTCACGTGG
106736041 GCCGATTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.06, C:0.33, G:0.33, T:0.27
Consensus pattern (17 bp):
CTCCTCTGGTCACGTGG
Found at i:106738129 original size:79 final size:79
Alignment explanation
Indices: 106738036--106738201 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
106738026 TCTTCGGAAT
* * ** *
106738036 TTAG-CCGGATATAACCACAAGCAC-AATTGCCTTC-GGTCTTAACCCGGATTTGGTAACTTGCA
1 TTAGCCCGGATATAACAACAAGCACGAA-TGCCTTCGGGTCTTAACCCGGATATAATAACTAGCA
*
106738098 CAAATGCCTTCGGGTC
65 CAAATGCCTT-GGGAC
** * * *
106738114 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCAT
1 TTAGCCCGGATATAACAACAAGCACGAATGCCTTCGGGTCTTAACCCGGATATAATAACTAGCAC
106738179 AAATGCCTTGGGAC
66 AAATGCCTTGGGAC
106738193 TTAGCCCGG
1 TTAGCCCGG
106738202 GTATCATTCA
Statistics
Matches: 74, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
78 4 0.05
79 37 0.50
80 33 0.45
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
TTAGCCCGGATATAACAACAAGCACGAATGCCTTCGGGTCTTAACCCGGATATAATAACTAGCAC
AAATGCCTTGGGAC
Found at i:106738144 original size:40 final size:40
Alignment explanation
Indices: 106738036--106738201 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
106738026 TCTTCGGAAT
* * *
106738036 TTAG-CCGGATATAACCACAAGCACAATTGCCTTC-GGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
106738074 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
106738114 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
106738154 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTT-GGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
106738193 TTAGCCCGG
1 TTAGCCCGG
106738202 GTATCATTCA
Statistics
Matches: 105, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
38 3 0.03
39 35 0.33
40 66 0.63
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:106746083 original size:56 final size:56
Alignment explanation
Indices: 106745997--106746110 Score: 228
Period size: 56 Copynumber: 2.0 Consensus size: 56
106745987 GACTTTTCCG
106745997 ATGCACATGTAAACATACCTTATCGTATGGGTTTTTCGAGCGTATTAATTGAATTT
1 ATGCACATGTAAACATACCTTATCGTATGGGTTTTTCGAGCGTATTAATTGAATTT
106746053 ATGCACATGTAAACATACCTTATCGTATGGGTTTTTCGAGCGTATTAATTGAATTT
1 ATGCACATGTAAACATACCTTATCGTATGGGTTTTTCGAGCGTATTAATTGAATTT
106746109 AT
1 AT
106746111 TACAGCACCA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (56 bp):
ATGCACATGTAAACATACCTTATCGTATGGGTTTTTCGAGCGTATTAATTGAATTT
Found at i:106746218 original size:40 final size:39
Alignment explanation
Indices: 106746154--106746321 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
106746144 TCTTCAGAAT
* **
106746154 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAA-TGCCTTCGGGTC
* * *** *
106746193 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
*
106746233 TTAGCCCGGATATAACAACTCGCACGAATGCCTTTGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
** * * *
106746273 TTAGCCCGGATATAATTACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACAACTCGCA-CAATGCCTTCGGGTC
106746313 TTAGCCCGG
1 TTAGCCCGG
106746322 GTATCGTTCA
Statistics
Matches: 104, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
39 3 0.03
40 99 0.95
41 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTCGCACAATGCCTTCGGGTC
Found at i:106746302 original size:80 final size:80
Alignment explanation
Indices: 106746154--106746321 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 80
106746144 TCTTCAGAAT
* * ** *
106746154 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCAC
*
106746218 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGAC
** * * *
106746233 TTAGCCCGGATATAACAACTCGCACGAA-TGCCTTTGGGTCTTAGCCCGGATATAATTACTAGCA
1 TTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCA
*
106746297 TAAATGCCTTCGGGAC
65 CAAATGCCTTCGGGAC
106746313 TTAGCCCGG
1 TTAGCCCGG
106746322 GTATCGTTCA
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
79 4 0.05
80 69 0.92
81 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
TTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCAC
AAATGCCTTCGGGAC
Found at i:106748091 original size:71 final size:71
Alignment explanation
Indices: 106748002--106748165 Score: 301
Period size: 71 Copynumber: 2.3 Consensus size: 71
106747992 GAGATGTATC
*
106748002 CCATGTAGATAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
106748067 AGGACA
66 AGGACA
*
106748073 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
106748138 CGGACA
66 AGGACA
106748144 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
106748166 AGACAAATCG
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 90 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.20
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:106751644 original size:29 final size:30
Alignment explanation
Indices: 106751552--106751678 Score: 151
Period size: 29 Copynumber: 4.5 Consensus size: 30
106751542 GACAAGATTG
* * * * *
106751552 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTCTGAAATTATATA
*
106751582 GCACTAAGTGTGCGAGTTTG--ATTATATA
1 GCACTAAGTGTGCGAGTCTGAAATTATATA
106751610 GCACTAAGTGTGCGAG-CTGAAATTATATA
1 GCACTAAGTGTGCGAGTCTGAAATTATATA
106751639 GCACTAAGTGTGCGAG-CTGAAA--ATATA
1 GCACTAAGTGTGCGAGTCTGAAATTATATA
106751666 -CACTAAGTGTGCG
1 GCACTAAGTGTGCG
106751679 GATTCACTAT
Statistics
Matches: 90, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
26 13 0.14
27 7 0.08
28 22 0.24
29 30 0.33
30 18 0.20
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTCTGAAATTATATA
Found at i:106751646 original size:57 final size:57
Alignment explanation
Indices: 106751552--106751678 Score: 159
Period size: 57 Copynumber: 2.2 Consensus size: 57
106751542 GACAAGATTG
* * * * **
106751552 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTCTAAAATTATACAGCACTAAGTGTGCGAG-CTGAAAATATA
* *
106751610 GCACTAAGTGTGCGAG-CTGAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATA
1 GCACTAAGTGTGCGAGTCTAAAATTATACAGCACTAAGTGTGCGAGCTGAAAATATA
106751666 -CACTAAGTGTGCG
1 GCACTAAGTGTGCG
106751679 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
55 13 0.21
56 8 0.13
57 25 0.41
58 15 0.25
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTCTAAAATTATACAGCACTAAGTGTGCGAGCTGAAAATATA
Found at i:106758474 original size:14 final size:14
Alignment explanation
Indices: 106758455--106758482 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
106758445 GTTTTGGTTG
106758455 CTAACTTGATGTGC
1 CTAACTTGATGTGC
106758469 CTAACTTGATGTGC
1 CTAACTTGATGTGC
106758483 ATGTTAGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (14 bp):
CTAACTTGATGTGC
Found at i:106759522 original size:30 final size:30
Alignment explanation
Indices: 106759486--106759614 Score: 151
Period size: 30 Copynumber: 4.5 Consensus size: 30
106759476 GACAAGATTG
* * *
106759486 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
106759516 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
106759544 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
106759574 GCACTAAGTGTGCGAG-CTGAAA-T-TATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
106759601 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
106759615 GATTCACTAT
Statistics
Matches: 87, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
27 18 0.21
28 24 0.28
29 3 0.03
30 42 0.48
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:106759577 original size:58 final size:57
Alignment explanation
Indices: 106759486--106759614 Score: 170
Period size: 58 Copynumber: 2.2 Consensus size: 57
106759476 GACAAGATTG
* * * * * *
106759486 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAAT-TATA
*
106759544 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAATTATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATTATA
106759601 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
106759615 GATTCACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
57 20 0.32
58 43 0.68
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATTATA
Found at i:106764020 original size:71 final size:71
Alignment explanation
Indices: 106763904--106764055 Score: 286
Period size: 71 Copynumber: 2.1 Consensus size: 71
106763894 GACGCATCCC
106763904 GAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGT
1 GAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGT
106763969 AGACAA
66 AGACAA
* *
106763975 GAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGACGGACACCATGT
1 GAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGT
106764040 AGACAA
66 AGACAA
106764046 GAGAGCTACG
1 GAGAGCTACG
106764056 AGACAAATCG
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 79 1.00
ACGTcount: A:0.34, C:0.18, G:0.30, T:0.19
Consensus pattern (71 bp):
GAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGT
AGACAA
Found at i:106767457 original size:30 final size:30
Alignment explanation
Indices: 106767421--106767551 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
106767411 GACAAGATTG
* * * * *
106767421 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
106767451 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
106767479 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
106767509 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
106767538 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
106767552 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:106767512 original size:58 final size:58
Alignment explanation
Indices: 106767421--106767551 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
106767411 GACAAGATTG
* * * * * *
106767421 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
106767479 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
106767538 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
106767552 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:106775391 original size:30 final size:30
Alignment explanation
Indices: 106775355--106775485 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
106775345 GACAAGATTG
* * * * *
106775355 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
106775385 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
106775413 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
106775443 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
106775472 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
106775486 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:106775446 original size:58 final size:58
Alignment explanation
Indices: 106775355--106775485 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
106775345 GACAAGATTG
* * * * * *
106775355 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
106775413 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
106775472 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
106775486 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:106782637 original size:70 final size:71
Alignment explanation
Indices: 106782486--106782648 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
106782476 GAGATGTATC
106782486 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
106782551 AGGACA
66 AGGACA
106782557 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
106782621 CGGACA
66 AGGACA
106782627 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
106782649 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:106787971 original size:29 final size:29
Alignment explanation
Indices: 106787929--106788039 Score: 168
Period size: 29 Copynumber: 3.8 Consensus size: 29
106787919 TGCAATGAGA
*
106787929 TCGCACACTTAGTGCTCGATAGTTTTACT
1 TCGCACACTTAGTGCTCGATAATTTTACT
**
106787958 TCGCACACTTAGTGCTTAATAATTTTACT
1 TCGCACACTTAGTGCTCGATAATTTTACT
* *
106787987 TCGCACACTTAGTGCTCGTTAATTTTTCT
1 TCGCACACTTAGTGCTCGATAATTTTACT
*
106788016 TTGCACACTTAGTGCTCGATAATT
1 TCGCACACTTAGTGCTCGATAATT
106788040 CACATATATA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 73 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.41
Consensus pattern (29 bp):
TCGCACACTTAGTGCTCGATAATTTTACT
Found at i:106791481 original size:43 final size:43
Alignment explanation
Indices: 106791420--106791505 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
106791410 TAGATACTTG
*
106791420 ATAGTGTGATGTTGCCTCCGACGATCTCCAATCCCAAGCTAAC
1 ATAGTGTGATGTTGCCTCCAACGATCTCCAATCCCAAGCTAAC
*
106791463 ATAGTGTGATGTTGCCTCCAACGATCTCCAATCCCGAGCTAAC
1 ATAGTGTGATGTTGCCTCCAACGATCTCCAATCCCAAGCTAAC
106791506 CTGAAAACAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (43 bp):
ATAGTGTGATGTTGCCTCCAACGATCTCCAATCCCAAGCTAAC
Found at i:106794293 original size:107 final size:107
Alignment explanation
Indices: 106794104--106794307 Score: 259
Period size: 107 Copynumber: 1.9 Consensus size: 107
106794094 GTTTGCAGGA
* *
106794104 TGAGGATCCAAATACTCACTTGGCGAATTTTCTGAAACTTTACGAATTATTTAAAATCAATGGCG
1 TGAGGATCCAAATACTAACTTGGCGAATTTTCTGAAACTTTACGAATCATTTAAAATCAATGGCG
* *
106794169 TCTCTAATGATGTCATTCATCTTCGGTTATTTGCATTTTCAT
66 TCTCTAATGATGCCATTCACCTTCGGTTATTTGCATTTTCAT
* * * * * *
106794211 TGAGGATCCAAATACTAATTTGGTGAATTTTCT-AAAGTTTTGCGACA-CATTTAAGATCAATTG
1 TGAGGATCCAAATACTAACTTGGCGAATTTTCTGAAA-CTTTACGA-ATCATTTAAAATCAATGG
* * *
106794274 CGTTTCTGATGATGCCATTCACCTTTGGTTATTT
64 CGTCTCTAATGATGCCATTCACCTTCGGTTATTT
106794308 CCCTTTTTGT
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
106 3 0.04
107 78 0.95
108 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (107 bp):
TGAGGATCCAAATACTAACTTGGCGAATTTTCTGAAACTTTACGAATCATTTAAAATCAATGGCG
TCTCTAATGATGCCATTCACCTTCGGTTATTTGCATTTTCAT
Found at i:106806286 original size:25 final size:25
Alignment explanation
Indices: 106806252--106806302 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
106806242 TGAATTTTGA
106806252 TTAATTTATGATTTTTATTAATATG
1 TTAATTTATGATTTTTATTAATATG
106806277 TTAATTTATGATTTTTATTAATATG
1 TTAATTTATGATTTTTATTAATATG
106806302 T
1 T
106806303 CTTGAATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (25 bp):
TTAATTTATGATTTTTATTAATATG
Found at i:106806884 original size:4 final size:4
Alignment explanation
Indices: 106806877--106806905 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
106806867 TAAAAAAAAA
106806877 ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
106806906 TTAGTAGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:106812282 original size:15 final size:14
Alignment explanation
Indices: 106812257--106812295 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
106812247 TTTAAACTCA
106812257 TTTTATTTTATTTT
1 TTTTATTTTATTTT
106812271 TTTTACTTTTATTTCT
1 TTTTA-TTTTATTT-T
*
106812287 ATTTATTTT
1 TTTTATTTT
106812296 TTGAAGACTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 5 0.23
15 12 0.55
16 5 0.23
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTATTTTATTTT
Found at i:106815782 original size:46 final size:47
Alignment explanation
Indices: 106815534--106815854 Score: 271
Period size: 46 Copynumber: 6.8 Consensus size: 47
106815524 CATAGGGTAT
*
106815534 AATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-CATCCATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACAT-C-TC
* * * **
106815582 AA-GTCGATGCCATGTCCCAGACGTGGTCTTACACTGACTATCGAAATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-C-ATCTC
* * * * *
106815630 AACGCTGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCT-ACATCTC
* * * * * *
106815680 CATGCCAATGCCATGTCCCAAACATGGTTTTACCCTGAC-ACATCTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACATCTC
*
106815726 -GTAGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTC
1 AAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TACATCTC
* * * * * *
106815772 GAGGTCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-ACATCTC
*
106815818 AATGCCGATGCCATGTCCCAGACATGGTCTTCCACTG
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTG
106815855 TCTCTCCAAT
Statistics
Matches: 222, Mismatches: 37, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
44 10 0.05
45 15 0.07
46 63 0.28
47 49 0.22
48 16 0.07
49 31 0.14
50 34 0.15
51 3 0.01
52 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (47 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACATCTC
Found at i:106819573 original size:33 final size:33
Alignment explanation
Indices: 106819536--106819599 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
106819526 TCAAAATTTC
106819536 ATTGTTTTCGACCTTAAAACTGTGTCAAATGAA
1 ATTGTTTTCGACCTTAAAACTGTGTCAAATGAA
*
106819569 ATTGTTTTCGACCTTAGAACTGTGTCAAATG
1 ATTGTTTTCGACCTTAAAACTGTGTCAAATG
106819600 CCAAATAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.38
Consensus pattern (33 bp):
ATTGTTTTCGACCTTAAAACTGTGTCAAATGAA
Found at i:106820494 original size:23 final size:23
Alignment explanation
Indices: 106820467--106820511 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
106820457 AACAAGTACT
106820467 AATATTTATATAAT-TAAAATATC
1 AATATTT-TATAATATAAAATATC
*
106820490 AATATTTTATACTATAAAATAT
1 AATATTTTATAATATAAAATAT
106820512 TTATAAATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (23 bp):
AATATTTTATAATATAAAATATC
Found at i:106823752 original size:17 final size:17
Alignment explanation
Indices: 106823730--106823763 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
106823720 TTGAAACACA
106823730 AAACTAAAAAAAGTTTT
1 AAACTAAAAAAAGTTTT
*
106823747 AAACTAGAAAAAGTTTT
1 AAACTAAAAAAAGTTTT
106823764 CTCTCTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.09, T:0.29
Consensus pattern (17 bp):
AAACTAAAAAAAGTTTT
Found at i:106824438 original size:6 final size:6
Alignment explanation
Indices: 106824423--106824456 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
106824413 CAAATGGACC
* *
106824423 ATTTCT ATTTCA ATTTCT ATTTCA ATTTCT ATTT
1 ATTTCT ATTTCT ATTTCT ATTTCT ATTTCT ATTT
106824457 TTGGGAACCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.62
Consensus pattern (6 bp):
ATTTCT
Found at i:106824440 original size:12 final size:12
Alignment explanation
Indices: 106824423--106824456 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
106824413 CAAATGGACC
106824423 ATTTCTATTTCA
1 ATTTCTATTTCA
106824435 ATTTCTATTTCA
1 ATTTCTATTTCA
106824447 ATTTCTATTT
1 ATTTCTATTT
106824457 TTGGGAACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.62
Consensus pattern (12 bp):
ATTTCTATTTCA
Found at i:106825958 original size:56 final size:56
Alignment explanation
Indices: 106825897--106826010 Score: 210
Period size: 56 Copynumber: 2.0 Consensus size: 56
106825887 AAGCTTAATT
*
106825897 GGCTTGGTAATGGTAAAAATGACCTATTTATAAGAAAAACAAAAGTTGAGATGGAG
1 GGCTTGGTAATGGTAAAAATCACCTATTTATAAGAAAAACAAAAGTTGAGATGGAG
*
106825953 GGCTTGGTAATGGTAAAGATCACCTATTTATAAGAAAAACAAAAGTTGAGATGGAG
1 GGCTTGGTAATGGTAAAAATCACCTATTTATAAGAAAAACAAAAGTTGAGATGGAG
106826009 GG
1 GG
106826011 TTATGAAGGT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.41, C:0.08, G:0.26, T:0.25
Consensus pattern (56 bp):
GGCTTGGTAATGGTAAAAATCACCTATTTATAAGAAAAACAAAAGTTGAGATGGAG
Found at i:106831177 original size:2 final size:2
Alignment explanation
Indices: 106831172--106831207 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
106831162 AAAAATAAGA
106831172 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
106831208 GCATGAAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:106836610 original size:31 final size:31
Alignment explanation
Indices: 106836573--106836633 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
106836563 AAGTGATTTG
* * *
106836573 ATTAATTTTAGTGTTTATATTTTTTAAATTA
1 ATTAATTTTAATCTATATATTTTTTAAATTA
106836604 ATTAATTTTAATCTATATATTTTTTAAATT
1 ATTAATTTTAATCTATATATTTTTTAAATT
106836634 TTAAAATTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (31 bp):
ATTAATTTTAATCTATATATTTTTTAAATTA
Found at i:106847023 original size:39 final size:39
Alignment explanation
Indices: 106846905--106847087 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
106846895 TCGTTCAAAC
* * ** * **
106846905 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
106846945 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
106846985 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
106847024 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
106847063 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
106847088 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:106854453 original size:39 final size:39
Alignment explanation
Indices: 106854335--106854517 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
106854325 TCGTTCAAAC
* * ** * **
106854335 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
106854375 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
106854415 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
106854454 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
106854493 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
106854518 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:106861863 original size:6 final size:6
Alignment explanation
Indices: 106861843--106861965 Score: 111
Period size: 6 Copynumber: 20.3 Consensus size: 6
106861833 ATATGAAAAC
* * * * *
106861843 AAAATA AATATA AAAAGA AAAATA ATAATA AACATA AAAAGA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* ** * * * *
106861891 ATAATA AACCTA AAAATA AACATA AAGAGA AAAATA AAAATA AAGATAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAAT-A
* *
106861940 AAAATA AAAATA AACATA AAGATA AA
1 AAAATA AAAATA AAAATA AAAATA AA
106861966 TGGATTTAAT
Statistics
Matches: 91, Mismatches: 25, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
6 86 0.95
7 5 0.05
ACGTcount: A:0.75, C:0.04, G:0.05, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:106866760 original size:28 final size:28
Alignment explanation
Indices: 106866672--106866778 Score: 124
Period size: 28 Copynumber: 3.8 Consensus size: 28
106866662 GAATCATTCG
* * *
106866672 ATATTTTGCACACGAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* * *
106866700 ATATCTCACACACTAAGTGCCATGCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
106866728 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* * *
106866756 ATATTTCGTACACTGAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
106866779 ATTTGATTGC
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 67 1.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:106873025 original size:43 final size:44
Alignment explanation
Indices: 106872975--106873124 Score: 128
Period size: 43 Copynumber: 3.5 Consensus size: 44
106872965 GTTACCGAGA
*
106872975 TGTGATTACATGTAAGACCATGTCTGGGACATTAGCAAT-G-TAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTAGC-ATCGTTAT
* * * *
106873018 TGTGATTACGTGTAAAACCATGTTTGGAACATTGGCATCGTTAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTAGCATCGTTAT
* * * * * * *
106873062 T-CGATTTCGTGTAAGACCCTGTCTGGGATAGTGGCATCGATA-
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTAGCATCGTTAT
* * *
106873104 TGTGATAACATGTAACACCAT
1 TGTGATTACGTGTAAGACCAT
106873125 ATTTGAGATA
Statistics
Matches: 84, Mismatches: 20, Indels: 6
0.76 0.18 0.05
Matches are distributed among these distances:
42 3 0.04
43 77 0.92
44 4 0.05
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (44 bp):
TGTGATTACGTGTAAGACCATGTCTGGGACATTAGCATCGTTAT
Found at i:106874611 original size:42 final size:42
Alignment explanation
Indices: 106874564--106874643 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
106874554 AGAATTGGGT
* *
106874564 ACACGGAC-AGAGACACGGGCCTTTGTCTTAGACGTGTGTGCC
1 ACACGGACTAGA-ACACGGGCATGTGTCTTAGACGTGTGTGCC
* * *
106874606 ACACGGCCTAGAACACGGGCATGTGTCTTGGCCGTGTG
1 ACACGGACTAGAACACGGGCATGTGTCTTAGACGTGTG
106874644 AAACCTGTAC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
42 29 0.91
43 3 0.09
ACGTcount: A:0.20, C:0.26, G:0.33, T:0.21
Consensus pattern (42 bp):
ACACGGACTAGAACACGGGCATGTGTCTTAGACGTGTGTGCC
Found at i:106876659 original size:50 final size:49
Alignment explanation
Indices: 106876584--106876767 Score: 226
Period size: 50 Copynumber: 3.7 Consensus size: 49
106876574 TGAATACACG
* *
106876584 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-AATGTTAAGTCGCA
* * * *
106876634 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGATGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATG-TTAAGTCGCA
* * * * *
106876684 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATTGTTGA-TCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AAATGTTAAGTCGCA
*
106876733 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA
106876768 GATAGCTTCG
Statistics
Matches: 113, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
49 37 0.33
50 73 0.65
51 3 0.03
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.32
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGTTAAGTCGCA
Found at i:106876764 original size:99 final size:100
Alignment explanation
Indices: 106876580--106876767 Score: 315
Period size: 100 Copynumber: 1.9 Consensus size: 100
106876570 ATTGTGAATA
* *
106876580 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGACTGTTAAGTCGCATGTGTAGTACT
106876645 AAGTGCAGGCTACTACGTGTATCAAATGATGAGGT
66 AAGTGCAGGCTACTACGTGTATCAAATGATGAGGT
* * *
106876680 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATTGTTGA-TCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGACTGTTAAGTCGCATGTGTAGTACT
*
106876744 AAGTGCAGGCTACTATGTGTATCA
66 AAGTGCAGGCTACTACGTGTATCA
106876768 GATAGCTTCG
Statistics
Matches: 82, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
99 39 0.48
100 43 0.52
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (100 bp):
CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGACTGTTAAGTCGCATGTGTAGTACT
AAGTGCAGGCTACTACGTGTATCAAATGATGAGGT
Found at i:106882821 original size:72 final size:72
Alignment explanation
Indices: 106882737--106882876 Score: 253
Period size: 72 Copynumber: 1.9 Consensus size: 72
106882727 GTGGGTCTGC
* *
106882737 GTACTGACTTTGTGTATAAACTCGTGAGTAACTCACTGAGCGAGCATATCATGTTAATGCTTTGG
1 GTACTGAATTTGTGTATAAACTCGTGAGAAACTCACTGAGCGAGCATATCATGTTAATGCTTTGG
106882802 GGTTCGG
66 GGTTCGG
*
106882809 GTACTGAATTTGTGTATAAACTCGTGAGAAACTCACTGAGCGAGCATATCATGTTAGTGCTTTGG
1 GTACTGAATTTGTGTATAAACTCGTGAGAAACTCACTGAGCGAGCATATCATGTTAATGCTTTGG
106882874 GGT
66 GGT
106882877 CCGGATGCTG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (72 bp):
GTACTGAATTTGTGTATAAACTCGTGAGAAACTCACTGAGCGAGCATATCATGTTAATGCTTTGG
GGTTCGG
Found at i:106883983 original size:17 final size:18
Alignment explanation
Indices: 106883958--106883992 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
106883948 AAATAAATTA
106883958 CTTA-GTTTTTTCATATG
1 CTTATGTTTTTTCATATG
*
106883975 CTTATTTTTTTTCATATG
1 CTTATGTTTTTTCATATG
106883993 AACTTACTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.17, C:0.11, G:0.09, T:0.63
Consensus pattern (18 bp):
CTTATGTTTTTTCATATG
Found at i:106891061 original size:93 final size:93
Alignment explanation
Indices: 106890949--106891118 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
106890939 CCATAAGTGT
* * *
106890949 ACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAATG
1 ACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
106891014 AGTTCGGATGCCTAGTTACATCTCACGA
66 AGTTCGGATGCCTAGTTACATCTCACGA
*
106891042 ACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 ACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
106891107 AGTTCGGATGCC
66 AGTTCGGATGCC
106891119 CAAATATCCC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
ACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCACGA
Found at i:106891114 original size:46 final size:46
Alignment explanation
Indices: 106890939--106891114 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
106890929 TGTAACCCGC
* * * *
106890939 CCATAAGTGTACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* * *
106890985 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
106891035 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
106891078 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
106891115 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 66 0.61
47 31 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:106891133 original size:46 final size:45
Alignment explanation
Indices: 106890990--106891133 Score: 139
Period size: 46 Copynumber: 3.1 Consensus size: 45
106890980 CGCATCCATA
* * *
106890990 AGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
106891038 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
106891083 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
106891129 AGTGA
1 AGTGA
106891134 CATGTCACTT
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.48
47 30 0.39
48 5 0.06
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:106893606 original size:46 final size:46
Alignment explanation
Indices: 106893515--106893635 Score: 179
Period size: 46 Copynumber: 2.6 Consensus size: 46
106893505 ATCCGAACTT
* * * *
106893515 GTTGAGTTGCATTCCGAGTTCACTTATGGATGCAAGCATCTGAGCTC
1 GTTGAGTTGCGTTCCGAGTTCA-TTATGGATGCAAACACCCGAGCTC
*
106893562 GTTGAGTTGTGTTCCGAGTTCATTATGGATGCAAACACCCGAGCTC
1 GTTGAGTTGCGTTCCGAGTTCATTATGGATGCAAACACCCGAGCTC
*
106893608 TTTGAGTTGCGTTCCGAGTTCATTATGG
1 GTTGAGTTGCGTTCCGAGTTCATTATGG
106893636 GTGAGATTAT
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
46 47 0.70
47 20 0.30
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (46 bp):
GTTGAGTTGCGTTCCGAGTTCATTATGGATGCAAACACCCGAGCTC
Found at i:106897118 original size:28 final size:27
Alignment explanation
Indices: 106897032--106897120 Score: 90
Period size: 27 Copynumber: 3.2 Consensus size: 27
106897022 GTGATAGAGT
* *
106897032 CACCAGATACAGATATTTTGTGACAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
106897061 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
106897088 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
106897116 CACCA
1 CACCA
106897121 AGACGCTTCC
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
27 22 0.44
28 21 0.42
29 7 0.14
ACGTcount: A:0.34, C:0.25, G:0.22, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:106897274 original size:28 final size:28
Alignment explanation
Indices: 106897227--106897318 Score: 159
Period size: 28 Copynumber: 3.3 Consensus size: 28
106897217 AAATTAACCC
*
106897227 TAGGGGTATAGA-GGTCATTTTGCATACA
1 TAGGGGTATA-ATGGTAATTTTGCATACA
106897255 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
106897283 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
106897311 TAGGGGTA
1 TAGGGGTA
106897319 CTCTAGTACA
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
27 1 0.02
28 61 0.98
ACGTcount: A:0.30, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:106904992 original size:28 final size:27
Alignment explanation
Indices: 106904909--106904996 Score: 101
Period size: 25 Copynumber: 3.2 Consensus size: 27
106904899 GTGACAGAGT
*
106904909 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
*
106904938 CACCAGAACAGAT-A--TGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
106904963 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
106904991 CACCAG
1 CACCAG
106904997 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
25 23 0.44
26 1 0.02
28 21 0.40
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.25, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:106905155 original size:28 final size:28
Alignment explanation
Indices: 106905102--106905189 Score: 160
Period size: 28 Copynumber: 3.2 Consensus size: 28
106905092 AAATTAACCC
*
106905102 TAGGGGTATAA-GGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
106905129 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
106905157 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
106905185 TAGGG
1 TAGGG
106905190 TACTCTAGTA
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
27 11 0.19
28 48 0.81
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:106905456 original size:8 final size:8
Alignment explanation
Indices: 106905440--106905471 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
106905430 CCCAAAATAC
106905440 CGGCTTTT
1 CGGCTTTT
*
106905448 CGGCATTT
1 CGGCTTTT
106905456 CGGCTTTT
1 CGGCTTTT
106905464 CGGCTTTT
1 CGGCTTTT
106905472 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:106906503 original size:12 final size:13
Alignment explanation
Indices: 106906472--106906505 Score: 52
Period size: 12 Copynumber: 2.6 Consensus size: 13
106906462 AGCTCCTTTT
106906472 ATCTCCTAGCTCCA
1 ATCTCCT-GCTCCA
106906486 ATCTCCTGCTCC-
1 ATCTCCTGCTCCA
106906498 ATCTCCTG
1 ATCTCCTG
106906506 AGCAACTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 8 0.40
13 5 0.25
14 7 0.35
ACGTcount: A:0.15, C:0.44, G:0.09, T:0.32
Consensus pattern (13 bp):
ATCTCCTGCTCCA
Found at i:106914160 original size:29 final size:29
Alignment explanation
Indices: 106914127--106914200 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
106914117 CCTTCGAGCT
106914127 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
106914156 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
106914185 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
106914201 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:106914161 original size:58 final size:58
Alignment explanation
Indices: 106914068--106914200 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
106914058 ATACTCGATT
* * * * *
106914068 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
106914126 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
106914184 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
106914201 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:106922958 original size:28 final size:28
Alignment explanation
Indices: 106922893--106922991 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
106922883 CATGAGATTG
* * *
106922893 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
106922922 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
106922950 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
106922978 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
106922992 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Done.