Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 341 of 433
Found at i:106930045 original size:28 final size:28
Alignment explanation
Indices: 106929990--106930060 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 28
106929980 TTTAGTAAGT
*
106929990 TCGCACACTTAGTGCTTAATAATCAAAC
1 TCGCACACTTAGTGCTTAACAATCAAAC
*
106930018 -CTGCACACTTAGTGC-TATACAATTAAAC
1 TC-GCACACTTAGTGCTTA-ACAATCAAAC
*
106930046 TCGCACACTTTGTGC
1 TCGCACACTTAGTGC
106930061 CAATCTCATT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
27 3 0.08
28 33 0.89
29 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.30
Consensus pattern (28 bp):
TCGCACACTTAGTGCTTAACAATCAAAC
Found at i:106932845 original size:29 final size:29
Alignment explanation
Indices: 106932783--106932885 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
106932773 GTGACGAGAT
* * *
106932783 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
106932812 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
106932841 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
106932870 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
106932886 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:106940080 original size:28 final size:28
Alignment explanation
Indices: 106940040--106940109 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
106940030 ATAGTAAGTC
*
106940040 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
106940068 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
106940096 CGCACACTTAGTGC
1 CGCACACTTAGTGC
106940110 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:106942323 original size:23 final size:23
Alignment explanation
Indices: 106942294--106942477 Score: 185
Period size: 23 Copynumber: 7.7 Consensus size: 23
106942284 GGCATGATCA
** *
106942294 GTAAGCTCTTTTGAGTTGAAACG
1 GTAAGCTCTTACGAGCTGAAACG
* *
106942317 GTAAGCTCCT-CTGAGCTGAAATG
1 GTAAGCTCTTAC-GAGCTGAAACG
*
106942340 GTAAGCTCTTATGAGCTGACATATCG
1 GTAAGCTCTTACGAGCTGA-A-A-CG
106942366 GTAAGCTCATT-CGAGCTGAAACG
1 GTAAGCTC-TTACGAGCTGAAACG
* *
106942389 GTAAGCCCTTACAAGCTGAAACG
1 GTAAGCTCTTACGAGCTGAAACG
*
106942412 GTAAGCTCTTACGAGCTGATATATCT
1 GTAAGCTCTTACGAGCTGA-A-A-CG
106942438 GTAAGCTCATT-CGAGCTGAAACG
1 GTAAGCTC-TTACGAGCTGAAACG
106942461 GTAAGCTCTTACGAGCT
1 GTAAGCTCTTACGAGCT
106942478 ATGGTGAGTC
Statistics
Matches: 135, Mismatches: 14, Indels: 24
0.78 0.08 0.14
Matches are distributed among these distances:
22 4 0.03
23 86 0.64
24 4 0.03
25 4 0.03
26 33 0.24
27 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (23 bp):
GTAAGCTCTTACGAGCTGAAACG
Found at i:106942373 original size:49 final size:46
Alignment explanation
Indices: 106942294--106942477 Score: 169
Period size: 49 Copynumber: 3.9 Consensus size: 46
106942284 GGCATGATCA
* * * *
106942294 GTAAGCTCTTTTGAGTTGAAACGGTAAGCTC-CTCTGAGCTGAAATG
1 GTAAGCTCTTATGAGCTGAAACGGTAAGCTCATTC-GAGCTGAAACG
106942340 GTAAGCTCTTATGAGCTGACATATCGGTAAGCTCATTCGAGCTGAAACG
1 GTAAGCTCTTATGAGCTGA-A-A-CGGTAAGCTCATTCGAGCTGAAACG
* ** *
106942389 GTAAGCCCTTACAAGCTGAAACGGTAAGCTC-TTACGAGCTGATATATCT
1 GTAAGCTCTTATGAGCTGAAACGGTAAGCTCATT-CGAGCTGA-A-A-CG
*
106942438 GTAAGCTCATT-CGAGCTGAAACGGTAAGCTC-TTACGAGCT
1 GTAAGCTC-TTATGAGCTGAAACGGTAAGCTCATT-CGAGCT
106942478 ATGGTGAGTC
Statistics
Matches: 119, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
45 2 0.02
46 35 0.29
47 3 0.03
48 3 0.03
49 72 0.61
50 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (46 bp):
GTAAGCTCTTATGAGCTGAAACGGTAAGCTCATTCGAGCTGAAACG
Found at i:106942472 original size:72 final size:72
Alignment explanation
Indices: 106942294--106942477 Score: 262
Period size: 72 Copynumber: 2.6 Consensus size: 72
106942284 GGCATGATCA
* * * * * *
106942294 GTAAGCTCTTTTGAGTTGAAACGGTAAGCTCCT-CTGAGCTGAAATGGTAAGCTCTTATGAGCTG
1 GTAAGCTCATTCGAGCTGAAACGGTAAGCTCTTAC-GAGCTGAAACGGTAAGCTCTTACGAGCTG
106942358 ACATATCG
65 ACATATCG
* *
106942366 GTAAGCTCATTCGAGCTGAAACGGTAAGCCCTTACAAGCTGAAACGGTAAGCTCTTACGAGCTGA
1 GTAAGCTCATTCGAGCTGAAACGGTAAGCTCTTACGAGCTGAAACGGTAAGCTCTTACGAGCTGA
* *
106942431 TATATCT
66 CATATCG
106942438 GTAAGCTCATTCGAGCTGAAACGGTAAGCTCTTACGAGCT
1 GTAAGCTCATTCGAGCTGAAACGGTAAGCTCTTACGAGCT
106942478 ATGGTGAGTC
Statistics
Matches: 99, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
72 98 0.99
73 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (72 bp):
GTAAGCTCATTCGAGCTGAAACGGTAAGCTCTTACGAGCTGAAACGGTAAGCTCTTACGAGCTGA
CATATCG
Found at i:106942644 original size:21 final size:22
Alignment explanation
Indices: 106942619--106942661 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
106942609 ATTTCAAATT
106942619 TTATACA-TT-AATCAATCACAA
1 TTATACATTTCAAT-AATCACAA
106942640 TTATACATTTCAATAATCACAA
1 TTATACATTTCAATAATCACAA
106942662 ACATATAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 7 0.35
22 10 0.50
23 3 0.15
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.35
Consensus pattern (22 bp):
TTATACATTTCAATAATCACAA
Found at i:106952991 original size:15 final size:17
Alignment explanation
Indices: 106952961--106952992 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
106952951 TTGATACTTG
106952961 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
106952978 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
106952993 AAATGTGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:106954865 original size:28 final size:27
Alignment explanation
Indices: 106954802--106954871 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
106954792 ATAGTGAGTC
*
106954802 CGCACACTTAGTGCTTTATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
106954829 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
106954857 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
106954872 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:106963493 original size:54 final size:54
Alignment explanation
Indices: 106963411--106963517 Score: 214
Period size: 54 Copynumber: 2.0 Consensus size: 54
106963401 ATTACCTCCG
106963411 AATCGGGAAGTTGTGTTTGGAATCGATTTATTGCCTGGAACAGCTCCAGTATCA
1 AATCGGGAAGTTGTGTTTGGAATCGATTTATTGCCTGGAACAGCTCCAGTATCA
106963465 AATCGGGAAGTTGTGTTTGGAATCGATTTATTGCCTGGAACAGCTCCAGTATC
1 AATCGGGAAGTTGTGTTTGGAATCGATTTATTGCCTGGAACAGCTCCAGTATC
106963518 TATTGCACCC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (54 bp):
AATCGGGAAGTTGTGTTTGGAATCGATTTATTGCCTGGAACAGCTCCAGTATCA
Found at i:106976878 original size:39 final size:40
Alignment explanation
Indices: 106976844--106976989 Score: 195
Period size: 40 Copynumber: 3.7 Consensus size: 40
106976834 ACCAGCTCAT
* *
106976844 AGCCCGTGGGTCTCT-AGCCCGGATAACATTCCAGCATGA
1 AGCCTGTGGGTCTTTAAGCCCGGATAACATTCCAGCATGA
** *
106976883 AAACTATGGGTCTTTAAGCCCGGATAACATTCCAGCATGA
1 AGCCTGTGGGTCTTTAAGCCCGGATAACATTCCAGCATGA
* *
106976923 AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
1 AGCCTGTGGGTCTTTAAGCCCGGATAACATTCCAGCATGA
* **
106976963 AGCTTACGGGTCTTTAAGCCCGGATAA
1 AGCCTGTGGGTCTTTAAGCCCGGATAA
106976990 TACCTCAAGT
Statistics
Matches: 94, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 10 0.11
40 84 0.89
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
AGCCTGTGGGTCTTTAAGCCCGGATAACATTCCAGCATGA
Found at i:106980940 original size:40 final size:39
Alignment explanation
Indices: 106980775--106980958 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
106980765 AAATTGAATG
* * *
106980775 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
106980815 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
106980855 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
106980895 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
106980934 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
106980959 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:106980983 original size:80 final size:81
Alignment explanation
Indices: 106980815--106981003 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
106980805 GCTGGAAATT
* * * *
106980815 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
106980880 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
106980896 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
106980959 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
106980975 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
106981004 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:106989052 original size:40 final size:39
Alignment explanation
Indices: 106988887--106989070 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
106988877 AAATTGAATG
* * *
106988887 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
106988927 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
106988967 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
106989007 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
106989046 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
106989071 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:106989095 original size:80 final size:81
Alignment explanation
Indices: 106988927--106989115 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
106988917 GCTGGAAATT
* * * *
106988927 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
106988992 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
106989008 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
106989071 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
106989087 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
106989116 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:106996046 original size:40 final size:40
Alignment explanation
Indices: 106996001--106996167 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
106995991 CGGAATATAA
106996001 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
106996041 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
106996081 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
106996121 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
106996160 CCGGATAT
1 CCGGATAT
106996168 TATTCAATTC
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:107009414 original size:72 final size:71
Alignment explanation
Indices: 107009282--107009462 Score: 247
Period size: 72 Copynumber: 2.5 Consensus size: 71
107009272 GCTTTTGAGC
* * * *
107009282 TACTCACGGGTTTGTACACAAAGTCAGCACCTGGA-CCCAAACATTAACATGATATGCTCGCTCA
1 TACTCACGGGTTTATACACAAAATCAGTACCCGGACCCCAAACATTAACATGATATGCTCGCTCA
107009346 GCAAGT
66 GCAAGT
* * *
107009352 TACTCATGAGTTTATACACAAAATTAGTACCCGGACCCCAAAGCATTAACATGATATGCTCGCTC
1 TACTCACGGGTTTATACACAAAATCAGTACCCGGACCCCAAA-CATTAACATGATATGCTCGCTC
**
107009417 AGTGAGT
65 AGCAAGT
*
107009424 TAATCACGGGTTTATACACAAAAGTCAGTACCCGGACCC
1 TACTCACGGGTTTATACACAAAA-TCAGTACCCGGACCC
107009463 ACATTACATA
Statistics
Matches: 95, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
70 28 0.29
71 6 0.06
72 47 0.49
73 14 0.15
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.24
Consensus pattern (71 bp):
TACTCACGGGTTTATACACAAAATCAGTACCCGGACCCCAAACATTAACATGATATGCTCGCTCA
GCAAGT
Found at i:107016562 original size:29 final size:29
Alignment explanation
Indices: 107016530--107016659 Score: 156
Period size: 29 Copynumber: 4.5 Consensus size: 29
107016520 ATAGTAAATC
*
107016530 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAACT
*
107016559 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAACT
* *
107016588 CGCACACTTAGTGCTATAGA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AACT
* * * *
107016616 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAACT
107016646 CGCACACTTAGTGC
1 CGCACACTTAGTGC
107016660 CAATCTTGTC
Statistics
Matches: 89, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
27 2 0.02
28 20 0.22
29 49 0.55
30 17 0.19
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAACT
Found at i:107019354 original size:13 final size:13
Alignment explanation
Indices: 107019336--107019368 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
107019326 TGTGGGCGCA
107019336 CACGGCCGTGTCG
1 CACGGCCGTGTCG
107019349 CACGGCCGTGTCG
1 CACGGCCGTGTCG
107019362 CACGGCC
1 CACGGCC
107019369 TTTTCTTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.09, C:0.42, G:0.36, T:0.12
Consensus pattern (13 bp):
CACGGCCGTGTCG
Found at i:107023904 original size:15 final size:15
Alignment explanation
Indices: 107023856--107023924 Score: 52
Period size: 15 Copynumber: 4.7 Consensus size: 15
107023846 TAAAGATAAC
*
107023856 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
* *
107023870 AAGAAATCCA-AGATT
1 AAGAAACCCAGA-ATA
* *
107023885 GAGAAACCCAGAGTA
1 AAGAAACCCAGAATA
* *
107023900 AAGAAATCTAGAATA
1 AAGAAACCCAGAATA
107023915 AAGAAACCCA
1 AAGAAACCCA
107023925 AGATACGATA
Statistics
Matches: 40, Mismatches: 12, Indels: 5
0.70 0.21 0.09
Matches are distributed among these distances:
14 9 0.22
15 30 0.75
16 1 0.03
ACGTcount: A:0.57, C:0.16, G:0.16, T:0.12
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:107026910 original size:45 final size:46
Alignment explanation
Indices: 107026858--107026989 Score: 122
Period size: 45 Copynumber: 2.9 Consensus size: 46
107026848 ATAGTCTCAC
* * * * *
107026858 CCATAATGAACACGGGACGCAACTCAATAAGCTCGGGTGTTTGCAT
1 CCATAATGAACACGGAACACAACTCAACAAGCTCGGATGCTTGCAT
* * *
107026904 -CATAATGAACTCGGAACATAACTCAACGAGCTCGGATGCTTGCAT
1 CCATAATGAACACGGAACACAACTCAACAAGCTCGGATGCTTGCAT
* ** * * *
107026949 CCATAAGTGAACTCGGAATGCAACTTAACGAGTTCGGATGC
1 CCATAA-TGAACACGGAACACAACTCAACAAGCTCGGATGC
107026990 CTCATAATTC
Statistics
Matches: 71, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
45 37 0.52
46 5 0.07
47 29 0.41
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (46 bp):
CCATAATGAACACGGAACACAACTCAACAAGCTCGGATGCTTGCAT
Found at i:107026979 original size:47 final size:45
Alignment explanation
Indices: 107026859--107027024 Score: 136
Period size: 47 Copynumber: 3.6 Consensus size: 45
107026849 TAGTCTCACC
* * * ** * *
107026859 CATAATGAACACGGGACGCAACTCAATAAGCTCGGGTGTTTGCAT
1 CATAATGAACTCGGAACACAACTCAACGAGCTCGGATGCTTGCAT
*
107026904 CATAATGAACTCGGAACATAACTCAACGAGCTCGGATGCTTGCAT
1 CATAATGAACTCGGAACACAACTCAACGAGCTCGGATGCTTGCAT
** * * *
107026949 CCATAAGTGAACTCGGAATGCAACTTAACGAGTTCGGATGCCT-CAT
1 -CATAA-TGAACTCGGAACACAACTCAACGAGCTCGGATGCTTGCAT
* * *
107026995 AATTCTCATGAACTCGGAACGCAACTCAAC
1 CA---TAATGAACTCGGAACACAACTCAAC
107027025 AAGTTCAGAT
Statistics
Matches: 98, Mismatches: 18, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
45 38 0.39
46 8 0.08
47 50 0.51
48 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (45 bp):
CATAATGAACTCGGAACACAACTCAACGAGCTCGGATGCTTGCAT
Found at i:107029919 original size:43 final size:44
Alignment explanation
Indices: 107029840--107029995 Score: 158
Period size: 43 Copynumber: 3.6 Consensus size: 44
107029830 TGTTTTATCA
* * * *
107029840 TGTAAGGCCACGT-TAGGACGTTGGCATCGATTTATGATTTACG
1 TGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTTACG
* * *
107029883 TGTAAGACAATGTCTAGGACATTGGCATAG-TATATGATTT-TG
1 TGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTTACG
* * * * *
107029925 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGA-TTACA
1 TGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTTACG
* *
107029968 TGTAAGACCATGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTAGGACATTGGCAT
107029996 TGTACGAGTT
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
42 28 0.30
43 50 0.54
44 14 0.15
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (44 bp):
TGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTTACG
Found at i:107032145 original size:42 final size:42
Alignment explanation
Indices: 107032098--107032183 Score: 138
Period size: 42 Copynumber: 2.0 Consensus size: 42
107032088 CAGAATTGGA
* *
107032098 CACATGGGC-AGAGACACTGGCGTGTGTCTCAGCCGTGTGTGC
1 CACATGGCCTAGA-ACACGGGCGTGTGTCTCAGCCGTGTGTGC
107032140 CACATGGCCTAGAACACGGGCGTGTGTCTCAGCCGTGTGTGC
1 CACATGGCCTAGAACACGGGCGTGTGTCTCAGCCGTGTGTGC
107032182 CA
1 CA
107032184 TGGCGTGTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
42 38 0.93
43 3 0.07
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.21
Consensus pattern (42 bp):
CACATGGCCTAGAACACGGGCGTGTGTCTCAGCCGTGTGTGC
Found at i:107032216 original size:29 final size:27
Alignment explanation
Indices: 107032158--107032210 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
107032148 CTAGAACACG
*
107032158 GGCGTGTGTCTCAGCCGTGTGTGCCAT
1 GGCGTGTGTCTCAGCCGTATGTGCCAT
*
107032185 GGCGTGTGTCTCAGTCGTATGTGCCA
1 GGCGTGTGTCTCAGCCGTATGTGCCA
107032211 CATGGCCTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.09, C:0.25, G:0.36, T:0.30
Consensus pattern (27 bp):
GGCGTGTGTCTCAGCCGTATGTGCCAT
Found at i:107041308 original size:14 final size:14
Alignment explanation
Indices: 107041291--107041321 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
107041281 TATATACAAA
107041291 TATATATATGTGTT
1 TATATATATGTGTT
*
107041305 TATATATGTGTGTT
1 TATATATATGTGTT
107041319 TAT
1 TAT
107041322 TTGAAGTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (14 bp):
TATATATATGTGTT
Found at i:107041776 original size:24 final size:24
Alignment explanation
Indices: 107041749--107041865 Score: 94
Period size: 24 Copynumber: 4.9 Consensus size: 24
107041739 GAAATGACTT
107041749 TGGCACTATGTGTGCGGATTTGTA
1 TGGCACTATGTGTGCGGATTTGTA
** *
107041773 TGGCACTATGTGTTTGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGTA
* * * *
107041797 TGTCAATACGTGTGTGGA-TTGCTA
1 TGGCACTATGTGTGCGGATTTG-TA
* **
107041821 AGGCACTATGTGTGCAGG-TTAATA
1 TGGCACTATGTGTGC-GGATTTGTA
* *
107041845 TGGCACTATGGGTGCGAATTT
1 TGGCACTATGTGTGCGGATTT
107041866 CCTTGCTTGA
Statistics
Matches: 70, Mismatches: 19, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
23 4 0.06
24 63 0.90
25 3 0.04
ACGTcount: A:0.21, C:0.12, G:0.31, T:0.36
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGTA
Found at i:107049156 original size:40 final size:40
Alignment explanation
Indices: 107049112--107049335 Score: 260
Period size: 40 Copynumber: 5.6 Consensus size: 40
107049102 GCTACTCTTC
*
107049112 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
107049152 CAAATGCCTTCGGGACATAGCCTGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
107049192 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
107049232 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * ** * *
107049271 CAAATTCCTTC-GGATCTTAGTCCGAATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
107049312 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
107049336 ACATCATTCG
Statistics
Matches: 157, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 29 0.18
40 112 0.71
41 14 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:107049301 original size:119 final size:120
Alignment explanation
Indices: 107049114--107049336 Score: 294
Period size: 119 Copynumber: 1.9 Consensus size: 120
107049104 TACTCTTCCA
* **
107049114 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACATAGCCTGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGCCTGAAT
*
107049179 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTGACTCGCACC
* * *
107049234 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATTCCTTC-GGATCTTAGTCC-G
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CATAG-CCTG
* *
107049295 AATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 AATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
107049337 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
118 4 0.04
119 64 0.71
120 22 0.24
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGCCTGAAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCACC
Found at i:107057436 original size:39 final size:40
Alignment explanation
Indices: 107057280--107057503 Score: 217
Period size: 40 Copynumber: 5.7 Consensus size: 40
107057270 GCTACTCGTC
***
107057280 CAAATGCCTTCGGTTTATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATT-TAGTAACTCGCA
107057320 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATT-TAGTAACTCGCA
* * *
107057360 CAAATGCCTTCGGGACGTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
* ** * *
107057400 CCAATGCCTTCAAG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
* * * * *
107057439 CAAATGCCTTC-GGATCTTAG-TCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAGCCCGGATTTAGTAAC-TCGCA
*
107057479 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGA
107057504 CATCATTCGA
Statistics
Matches: 157, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
38 1 0.01
39 52 0.33
40 102 0.65
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
Found at i:107057497 original size:79 final size:80
Alignment explanation
Indices: 107057300--107057503 Score: 211
Period size: 79 Copynumber: 2.6 Consensus size: 80
107057290 CGGTTTATAG
* * * * *
107057300 CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAA
1 CCCGGATATAGTCACTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAA
107057364 TGCCTTCGGGACGTAA
65 TGCCTTCGGGACGTAA
* * * * **
107057380 CCCGGATTTAGTGACTCGCACCAATGCCTTCAAG-CTTAGCCCGGAAT-TAGTAACTCGCACAAA
1 CCCGGATATAGTCACTAGCA-CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAA
*
107057443 TGCCTTC-GGATC-TTA
65 TGCCTTCGGGA-CGTAA
**
107057458 GTCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCCGGATATAGTCAC-TAGCACAAAGCCTTCGGGACTTAGCCCGGA
107057504 CATCATTCGA
Statistics
Matches: 102, Mismatches: 17, Indels: 11
0.78 0.13 0.08
Matches are distributed among these distances:
78 26 0.25
79 48 0.47
80 25 0.25
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CCCGGATATAGTCACTAGCACAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAAT
GCCTTCGGGACGTAA
Found at i:107060597 original size:24 final size:24
Alignment explanation
Indices: 107060563--107060703 Score: 126
Period size: 24 Copynumber: 5.9 Consensus size: 24
107060553 GAAATGACTT
*
107060563 TGGCACGATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
*
107060587 TGGCACTATGTGTGCGGATTTGTA
1 TGGCACTATGTGTGCGGATTTGAA
*
107060611 TGGCACTATGTGTGTGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* * ** *
107060635 TGTCAATACATGTGTGGA-TTGCTAA
1 TGGCACTATGTGTGCGGATTTG--AA
* *
107060660 -GGCACTATGTGTGCGG-GTTAATA
1 TGGCACTATGTGTGCGGATTTGA-A
* *
107060683 TGGCACTATGGGTGCGAATTT
1 TGGCACTATGTGTGCGGATTT
107060704 CCTTACTTTG
Statistics
Matches: 94, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
22 1 0.01
23 4 0.04
24 85 0.90
25 4 0.04
ACGTcount: A:0.21, C:0.12, G:0.33, T:0.34
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGAA
Found at i:107060634 original size:48 final size:49
Alignment explanation
Indices: 107060563--107060703 Score: 144
Period size: 48 Copynumber: 2.9 Consensus size: 49
107060553 GAAATGACTT
*
107060563 TGGCACGATGTGTGCGGATTTGAATGGCACTATGTGTGCGGATTTG-TA
1 TGGCACTATGTGTGCGGATTTGAATGGCACTATGTGTGCGGATTTGCTA
* * * ** *
107060611 TGGCACTATGTGTGTGGATTTGAATGTCAATACATGTGTGGA-TTGCTA
1 TGGCACTATGTGTGCGGATTTGAATGGCACTATGTGTGCGGATTTGCTA
* * * * *
107060659 AGGCACTATGTGTGCGG-GTTAATATGGCACTATGGGTGCGAATTT
1 TGGCACTATGTGTGCGGATTTGA-ATGGCACTATGTGTGCGGATTT
107060704 CCTTACTTTG
Statistics
Matches: 72, Mismatches: 18, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
47 6 0.08
48 64 0.89
49 2 0.03
ACGTcount: A:0.21, C:0.12, G:0.33, T:0.34
Consensus pattern (49 bp):
TGGCACTATGTGTGCGGATTTGAATGGCACTATGTGTGCGGATTTGCTA
Found at i:107065440 original size:3 final size:3
Alignment explanation
Indices: 107065434--107065462 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
107065424 TGTGAATGTC
107065434 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
107065463 ACAGAGAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:107068574 original size:27 final size:28
Alignment explanation
Indices: 107068518--107068587 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
107068508 AAACTTGTAC
107068518 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
107068546 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
107068573 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
107068588 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:107068598 original size:27 final size:27
Alignment explanation
Indices: 107068518--107068599 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
107068508 AAACTTGTAC
* *
107068518 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
107068546 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
107068573 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
107068600 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:107076603 original size:27 final size:26
Alignment explanation
Indices: 107076547--107076640 Score: 147
Period size: 27 Copynumber: 3.6 Consensus size: 26
107076537 AAACTTGTAC
107076547 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAG-TTGAT-ATAT
107076575 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGA-TATAT
107076602 AGCACTAAGTGTGCGAGTTG--ATAT
1 AGCACTAAGTGTGCGAGTTGATATAT
107076626 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
107076641 GACTCACTAT
Statistics
Matches: 65, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
24 19 0.29
27 28 0.43
28 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGAGTTGATATAT
Found at i:107076652 original size:51 final size:53
Alignment explanation
Indices: 107076547--107076652 Score: 137
Period size: 51 Copynumber: 2.0 Consensus size: 53
107076537 AAACTTGTAC
* * *
107076547 AGCACTAAGTGTGCGAGTTTGATCATATAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGA--ATATAGCACTAAGTGTGCGAGCTCACTATAT
107076602 AGCACTAAGTGTGCGAG-TTG-ATATAGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAGTTTGAATATAGCACTAAGTGTGCGAG-CTCACTATAT
107076653 GCTTTTGAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
50 1 0.02
51 26 0.55
54 3 0.06
55 17 0.36
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (53 bp):
AGCACTAAGTGTGCGAGTTTGAATATAGCACTAAGTGTGCGAGCTCACTATAT
Found at i:107081280 original size:27 final size:28
Alignment explanation
Indices: 107081228--107081290 Score: 110
Period size: 27 Copynumber: 2.3 Consensus size: 28
107081218 AAATATGGTT
*
107081228 CTTAGTGTACGAAATATTGAGTATGGCA
1 CTTAGTGTACGAAATATTGAGAATGGCA
107081256 CTTAGTGTACG-AATATTGAGAATGGCA
1 CTTAGTGTACGAAATATTGAGAATGGCA
107081283 CTTAGTGT
1 CTTAGTGT
107081291 GCGAGATANA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 23 0.68
28 11 0.32
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (28 bp):
CTTAGTGTACGAAATATTGAGAATGGCA
Found at i:107082690 original size:20 final size:20
Alignment explanation
Indices: 107082643--107082690 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
107082633 CAAGATATTA
* *
107082643 CACATGACATGTATGCTATG
1 CACATGATATGTATGATATG
107082663 CACATGATATGTATGATATG
1 CACATGATATGTATGATATG
107082683 CACATGAT
1 CACATGAT
107082691 GTATTCATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (20 bp):
CACATGATATGTATGATATG
Found at i:107082771 original size:23 final size:23
Alignment explanation
Indices: 107082741--107082882 Score: 230
Period size: 23 Copynumber: 6.1 Consensus size: 23
107082731 AGGAAGTGCA
107082741 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
107082764 AAAGGGCTTATGCCCCAGCTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
107082787 AAAGGGCTTATGCCCCAATTATT
1 AAAGGGCTTATGCCCCAGTTATT
107082810 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
107082833 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* * *
107082856 AAATGGCTTTTTGCCGCAGTTATT
1 AAAGGGC-TTATGCCCCAGTTATT
107082880 AAA
1 AAA
107082883 AGAGGCTAGG
Statistics
Matches: 111, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
23 94 0.85
24 17 0.15
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:107083132 original size:31 final size:31
Alignment explanation
Indices: 107083092--107083151 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
107083082 CGTTTACAGT
*
107083092 AAAGGCTTCGGCCCAGTAATATGAAATATAA
1 AAAGACTTCGGCCCAGTAATATGAAATATAA
**
107083123 AAAGACTTCGGCCCAGTGTTATGAAATAT
1 AAAGACTTCGGCCCAGTAATATGAAATAT
107083152 GAAATAGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (31 bp):
AAAGACTTCGGCCCAGTAATATGAAATATAA
Found at i:107095660 original size:50 final size:51
Alignment explanation
Indices: 107095592--107095723 Score: 149
Period size: 52 Copynumber: 2.6 Consensus size: 51
107095582 ATCGGGTATG
* * ** **
107095592 CATAGTAGCATGCACTTAGTACTGTACATGCGACCT-AACCATCTGGTACA
1 CATAGTAGCCTACACTTAGTACTACACATGCGACCTAAACCATCTGAAACA
* * * *
107095642 CGTAGTAGCCTACACTTAGTACTACACATGTGACCTAAAACCATTTTAAACA
1 CATAGTAGCCTACACTTAGTACTACACATGCGACCT-AAACCATCTGAAACA
*
107095694 CATAGTAGCCTACACATAGTACTACACATG
1 CATAGTAGCCTACACTTAGTACTACACATG
107095724 TGTTCTCACA
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
50 30 0.44
52 38 0.56
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (51 bp):
CATAGTAGCCTACACTTAGTACTACACATGCGACCTAAACCATCTGAAACA
Found at i:107103149 original size:21 final size:22
Alignment explanation
Indices: 107103112--107103154 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
107103102 GCGTAAAATG
*
107103112 TAAAAGTTGCCTGTTA-TATGT
1 TAAAAGTTGCCTATTATTATGT
107103133 TAAAAG-TGCCTAATTATTATGT
1 TAAAAGTTGCCT-ATTATTATGT
107103155 ATCTTTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 5 0.26
21 9 0.47
22 5 0.26
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (22 bp):
TAAAAGTTGCCTATTATTATGT
Found at i:107107904 original size:40 final size:40
Alignment explanation
Indices: 107107819--107108050 Score: 299
Period size: 40 Copynumber: 5.8 Consensus size: 40
107107809 GTATGATATT
**
107107819 TGGAATTGTATCTGGGCTTAAAGACCC-CAGGCTATATGC
1 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTATATGC
* *
107107858 TAGAATTGTATCCAGGCTTAAAGACCCGTAGGCTATATGC
1 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTATATGC
* *
107107898 TGGAATTGTATCTAGGCTTAAAGACTCGCAGGCTATATGC
1 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTATATGC
* *
107107938 TGGAATTGTATCCAGGGTTAAAGACCCACAGGCTATATGC
1 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTATATGC
* * * *
107107978 TGGAATTGTATCCGGGCATAAAGACCCGCAAGCT-TCGTGC
1 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTAT-ATGC
* * *
107108018 TGGAATGGTATCC-GGGTTAAAGACCCGTAGGCT
1 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCT
107108051 TGCACTGGAA
Statistics
Matches: 168, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
39 41 0.24
40 127 0.76
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (40 bp):
TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTATATGC
Found at i:107115705 original size:40 final size:40
Alignment explanation
Indices: 107115650--107115834 Score: 286
Period size: 40 Copynumber: 4.7 Consensus size: 40
107115640 GTATGATATT
107115650 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
*
107115690 TGGAATTGTATCCGGGCTTAAAGACCCGCGGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
* *
107115730 TGGAATTGTATCCAGGCTTAAAGACCCACA-GCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
* *
107115769 TGGAATTGTATCCGGGCATAAAGACCCGCAGGCT-TCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGC
*
107115809 TGGAATGGTATCCGGG-TTAAAGACCC
1 TGGAATTGTATCCGGGCTTAAAGACCC
107115835 ATAGGCTTGC
Statistics
Matches: 133, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 46 0.35
40 87 0.65
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
Found at i:107115785 original size:79 final size:79
Alignment explanation
Indices: 107115650--107115841 Score: 280
Period size: 79 Copynumber: 2.4 Consensus size: 79
107115640 GTATGATATT
* *
107115650 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTGTATCCGGGCTTAAAGAC
1 TGGAATTGTATCC-GGCTTAAAGACCCACAGGCTATATGCTGGAATTGTATCCGGGCATAAAGAC
*
107115715 CCGCGGGCTAT-ATGC
65 CCGCAGGCT-TCATGC
107115730 TGGAATTGTATCCAGGCTTAAAGACCCACA-GCTATATGCTGGAATTGTATCCGGGCATAAAGAC
1 TGGAATTGTATCC-GGCTTAAAGACCCACAGGCTATATGCTGGAATTGTATCCGGGCATAAAGAC
*
107115794 CCGCAGGCTTCGTGC
65 CCGCAGGCTTCATGC
* * *
107115809 TGGAATGGTATCCGGGTTAAAGACCCATAGGCT
1 TGGAATTGTATCCGGCTTAAAGACCCACAGGCT
107115842 TGCGCTGGAA
Statistics
Matches: 102, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
78 15 0.15
79 59 0.58
80 28 0.27
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TGGAATTGTATCCGGCTTAAAGACCCACAGGCTATATGCTGGAATTGTATCCGGGCATAAAGACC
CGCAGGCTTCATGC
Found at i:107118081 original size:28 final size:28
Alignment explanation
Indices: 107118016--107118114 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
107118006 CATGAGATTG
* * *
107118016 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
107118045 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
107118073 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
107118101 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
107118115 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:107119762 original size:39 final size:39
Alignment explanation
Indices: 107119681--107119871 Score: 328
Period size: 39 Copynumber: 4.9 Consensus size: 39
107119671 TATGGTAACC
* * * *
107119681 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
107119721 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
107119760 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
107119799 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
107119838 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
107119872 CTCGAACATT
Statistics
Matches: 145, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 128 0.88
40 17 0.12
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:107125792 original size:48 final size:49
Alignment explanation
Indices: 107125732--107125824 Score: 161
Period size: 48 Copynumber: 1.9 Consensus size: 49
107125722 AATGTTCGAG
107125732 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATGCTA
* *
107125781 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATAT
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATAT
107125825 CCGGGTTAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
48 37 0.88
49 5 0.12
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (49 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATGCTA
Found at i:107125869 original size:40 final size:40
Alignment explanation
Indices: 107125785--107125883 Score: 119
Period size: 40 Copynumber: 2.5 Consensus size: 40
107125775 ATGCTATGAT
***
107125785 ACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATA
1 ACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATA
* * * *
107125824 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATA
1 ACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATA
*
107125864 ACCGGGCTATGTCCCGAAGG
1 ACCGGGCTAAGTCCCGAAGG
107125884 TGTTTGAACG
Statistics
Matches: 49, Mismatches: 10, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
39 9 0.18
40 40 0.82
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.22
Consensus pattern (40 bp):
ACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATA
Found at i:107133696 original size:14 final size:14
Alignment explanation
Indices: 107133677--107133708 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
107133667 AATTGTGCGA
107133677 GCTATGATATCCGG
1 GCTATGATATCCGG
107133691 GCTATGATATCCGG
1 GCTATGATATCCGG
107133705 GCTA
1 GCTA
107133709 AGCCCGAAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (14 bp):
GCTATGATATCCGG
Found at i:107133706 original size:53 final size:53
Alignment explanation
Indices: 107133642--107133744 Score: 188
Period size: 53 Copynumber: 1.9 Consensus size: 53
107133632 AATGTTCGAG
107133642 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTA
* *
107133695 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGG
107133745 TTAAGTCCCG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (53 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTA
Found at i:107133784 original size:40 final size:40
Alignment explanation
Indices: 107133701--107133798 Score: 117
Period size: 40 Copynumber: 2.5 Consensus size: 40
107133691 GCTATGATAT
*** *
107133701 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * *
107133740 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*
107133780 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
107133799 TGTTTGAACG
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 9 0.18
40 40 0.82
ACGTcount: A:0.21, C:0.23, G:0.33, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
Found at i:107143672 original size:30 final size:30
Alignment explanation
Indices: 107143636--107143698 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
107143626 TTCATGGTAG
107143636 TTTGCTTCTATTTTGATGTTTATGAGTTCC
1 TTTGCTTCTATTTTGATGTTTATGAGTTCC
107143666 TTTGCTTCTATTTTGATGTTTATGAGTTCC
1 TTTGCTTCTATTTTGATGTTTATGAGTTCC
107143696 TTT
1 TTT
107143699 CTTGAATCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.13, C:0.13, G:0.16, T:0.59
Consensus pattern (30 bp):
TTTGCTTCTATTTTGATGTTTATGAGTTCC
Found at i:107145546 original size:39 final size:39
Alignment explanation
Indices: 107145380--107145536 Score: 242
Period size: 39 Copynumber: 4.0 Consensus size: 39
107145370 TGATATTGGG
* *
107145380 AATATATCCGGACATGAGGTCTGCAGGCTATATGCTGGG
1 AATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
*
107145419 AATATACCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
*
107145458 AATATATCCGGACATGAGGTCCGCTGGCTATATGCTGGA
1 AATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * **
107145497 AATATATCCGGACTTGAAGTCCGCAGGCTACGTGCTGGA
1 AATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
107145536 A
1 A
107145537 TGGAATCCGG
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 108 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (39 bp):
AATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:107150772 original size:33 final size:33
Alignment explanation
Indices: 107150730--107150797 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
107150720 AATGAAAAGA
107150730 TATTGAATATCAAGCCGGAGACAAAGTTTTTCT
1 TATTGAATATCAAGCCGGAGACAAAGTTTTTCT
107150763 TATTGAATATCAAGCCGGAGACAAAGTTTTTCT
1 TATTGAATATCAAGCCGGAGACAAAGTTTTTCT
107150796 TA
1 TA
107150798 AAGTTTCACC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.34
Consensus pattern (33 bp):
TATTGAATATCAAGCCGGAGACAAAGTTTTTCT
Found at i:107151704 original size:30 final size:30
Alignment explanation
Indices: 107151668--107151730 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
107151658 TTCATGGTAG
107151668 TTTGCTTCTATTTTGATGTTTATGAGTTCC
1 TTTGCTTCTATTTTGATGTTTATGAGTTCC
*
107151698 TTTGCTTCTATTTTGATGTTTATGAGTTGC
1 TTTGCTTCTATTTTGATGTTTATGAGTTCC
107151728 TTT
1 TTT
107151731 CTTGAATCTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.13, C:0.11, G:0.17, T:0.59
Consensus pattern (30 bp):
TTTGCTTCTATTTTGATGTTTATGAGTTCC
Found at i:107153461 original size:39 final size:39
Alignment explanation
Indices: 107153407--107153596 Score: 310
Period size: 39 Copynumber: 4.9 Consensus size: 39
107153397 TGCATGATAT
107153407 TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGC
* *
107153446 TGGGAATATACCCGGACATGAGGTCCGTAGGCTATATGC
1 TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGC
107153485 TGGGAATATA-CCTGGACATGAGGTCCGCAGGCTATATGC
1 TGGGAATATATCC-GGACATGAGGTCCGCAGGCTATATGC
*
107153524 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGC
* * *
107153563 TGGAAATATATCCGGACTTGAAGTCCGCAGGCTA
1 TGGGAATATATCCGGACATGAGGTCCGCAGGCTA
107153597 CGTGCTGGAA
Statistics
Matches: 143, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
38 2 0.01
39 139 0.97
40 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (39 bp):
TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGC
Found at i:107156787 original size:42 final size:43
Alignment explanation
Indices: 107156686--107156821 Score: 127
Period size: 43 Copynumber: 3.2 Consensus size: 43
107156676 TAGGACCACA
* *
107156686 TCTGGG-CATTGGCATCAATTTAAGATTTATGTGTAAGACCATG
1 TCTGGGACA-TGGCATCAATATATGATTTATGTGTAAGACCATG
* * *
107156729 TCTAGGACATCAGCATC-ATATATGATTT-TGTGTAAGACCCTG
1 TCTGGGACAT-GGCATCAATATATGATTTATGTGTAAGACCATG
* ** * *
107156771 TCTGGGACAGTGGCATCAATATTTGA-TTACATATAAGACCACG
1 TCTGGGACA-TGGCATCAATATATGATTTATGTGTAAGACCATG
107156814 TCTGGGAC
1 TCTGGGAC
107156822 GCTGGCATTG
Statistics
Matches: 75, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
42 28 0.37
43 40 0.53
44 7 0.09
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.32
Consensus pattern (43 bp):
TCTGGGACATGGCATCAATATATGATTTATGTGTAAGACCATG
Found at i:107158598 original size:28 final size:29
Alignment explanation
Indices: 107158566--107158651 Score: 115
Period size: 29 Copynumber: 3.0 Consensus size: 29
107158556 TACATACATA
107158566 CATATGGCCCACTAGGCCC-AATCTCATT
1 CATATGGCCCACTAGGCCCAAATCTCATT
* *
107158594 CATATGGCCCATTAGGCCCAAATCACATT
1 CATATGGCCCACTAGGCCCAAATCTCATT
*
107158623 CATATGGCCCATCTA-GCCCGAATCT-ATT
1 CATATGGCCCA-CTAGGCCCAAATCTCATT
107158651 C
1 C
107158652 CAATCCATGT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
28 22 0.43
29 27 0.53
30 2 0.04
ACGTcount: A:0.27, C:0.34, G:0.14, T:0.26
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAAATCTCATT
Found at i:107158627 original size:29 final size:28
Alignment explanation
Indices: 107158561--107158634 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
107158551 AAGTCTACAT
* *
107158561 ACATACATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
*
107158589 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCC-AATC
107158618 ACATTCATATGGCCCAT
1 ACATTCATATGGCCCAT
107158635 CTAGCCCGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 21 0.51
29 20 0.49
ACGTcount: A:0.30, C:0.32, G:0.14, T:0.24
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:107161577 original size:46 final size:46
Alignment explanation
Indices: 107161522--107161702 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
107161512 TAGGATGGTT
107161522 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
107161568 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
107161614 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
107161661 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
107161703 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:107161683 original size:93 final size:93
Alignment explanation
Indices: 107161524--107161694 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
107161514 GGATGGTTGA
* *
107161524 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
107161589 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
107161617 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
107161682 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
107161695 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:107164671 original size:15 final size:15
Alignment explanation
Indices: 107164651--107164719 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
107164641 GTATCTTGGG
107164651 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
107164666 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
107164681 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
107164696 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
107164711 TTTCTTTAT
1 TTTCTTTAT
107164720 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:107164720 original size:30 final size:30
Alignment explanation
Indices: 107164642--107164729 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
107164632 CATAGTATCG
* * * *
107164642 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
107164672 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
107164702 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
107164730 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:107167160 original size:46 final size:46
Alignment explanation
Indices: 107167105--107167285 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
107167095 TAGGATGGTT
107167105 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
107167151 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
107167197 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
107167244 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
107167286 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:107167266 original size:93 final size:93
Alignment explanation
Indices: 107167107--107167277 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
107167097 GGATGGTTGA
* *
107167107 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
107167172 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
107167200 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
107167265 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
107167278 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:107174754 original size:40 final size:40
Alignment explanation
Indices: 107174675--107174851 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
107174665 CGGATGATAA
* * **
107174675 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* * * *
107174715 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-CTATAT
* *
107174755 CCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* * * *
107174795 CTGGGCTAAGAACCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
*
107174835 TC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
107174852 ATACTTGGGT
Statistics
Matches: 113, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 96 0.85
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
Found at i:107174833 original size:80 final size:80
Alignment explanation
Indices: 107174675--107174842 Score: 214
Period size: 80 Copynumber: 2.1 Consensus size: 80
107174665 CGGATGATAA
* * * * **
107174675 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCAAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGAACCGAAGGCATTTA
*
107174740 TGCTAGTGATTATAT
66 TGCGAGTGATTATAT
* * *
107174755 CCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGCTATATCTGGGCTAAGAACCGAAGGCATTTG
1 CCGGGCTAAGACCCAAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGAACCGAAGGCATTTA
107174820 TGCGAGTTG-TTATAT
66 TGCGAG-TGATTATAT
*
107174835 TC-GGCTAA
1 CCGGGCTAA
107174843 ATCCCGAAGA
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
79 6 0.08
80 68 0.89
81 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (80 bp):
CCGGGCTAAGACCCAAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGAACCGAAGGCATTTA
TGCGAGTGATTATAT
Found at i:107181098 original size:49 final size:49
Alignment explanation
Indices: 107181026--107181337 Score: 489
Period size: 49 Copynumber: 6.4 Consensus size: 49
107181016 ATCAAGATTC
* * *
107181026 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * *
107181075 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
107181124 GCGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
107181173 GGGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
107181222 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
107181271 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
107181320 GTGAAAGTGTATATATAT
1 GTGAAAGTGTATGTATAT
107181338 ATGTGGTAAA
Statistics
Matches: 248, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 248 1.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:107181461 original size:37 final size:36
Alignment explanation
Indices: 107181406--107181492 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
107181396 AACTTGGAAA
107181406 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
107181444 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
107181481 TATGTCCGGGTA
1 TATGTCCGGGTA
107181493 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:107187465 original size:20 final size:18
Alignment explanation
Indices: 107187415--107187466 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
107187405 CTACAAGATA
107187415 AACATTAAATTAA-ATTT
1 AACATTAAATTAATATTT
107187432 AACATTAAGA-TAATCACTTT
1 AACATTAA-ATTAAT-A-TTT
*
107187452 AATATTAAATTAATA
1 AACATTAAATTAATA
107187467 AAATACTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
17 11 0.38
18 1 0.03
19 3 0.10
20 14 0.48
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (18 bp):
AACATTAAATTAATATTT
Found at i:107187937 original size:9 final size:9
Alignment explanation
Indices: 107187923--107187952 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
107187913 TCAAACATAT
107187923 ATTAATTTA
1 ATTAATTTA
*
107187932 ATTAATTTG
1 ATTAATTTA
107187941 ATTAATTTA
1 ATTAATTTA
107187950 ATT
1 ATT
107187953 TTACTTGATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (9 bp):
ATTAATTTA
Found at i:107194676 original size:35 final size:35
Alignment explanation
Indices: 107194637--107194707 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
107194627 GTTATGTGAA
107194637 TGATGTGTTCATTAAGTGACCAGGATGTGGTAAGG
1 TGATGTGTTCATTAAGTGACCAGGATGTGGTAAGG
107194672 TGATGTGTTCATTAAGTGACCAGGATGTGGTAAGG
1 TGATGTGTTCATTAAGTGACCAGGATGTGGTAAGG
107194707 T
1 T
107194708 TATAAACAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.25, C:0.08, G:0.34, T:0.32
Consensus pattern (35 bp):
TGATGTGTTCATTAAGTGACCAGGATGTGGTAAGG
Found at i:107195628 original size:2 final size:2
Alignment explanation
Indices: 107195621--107195647 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
107195611 ATGACATGTG
107195621 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
107195648 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:107198310 original size:29 final size:29
Alignment explanation
Indices: 107198268--107198359 Score: 125
Period size: 29 Copynumber: 3.2 Consensus size: 29
107198258 TGAAAGCATG
*
107198268 CATATGAATGTGATTTGGGCCTAATGGGC
1 CATATGAATATGATTTGGGCCTAATGGGC
* *
107198297 CATATTAATATGATTTGGGCCTAATAGGC
1 CATATGAATATGATTTGGGCCTAATGGGC
*
107198326 CATATGAATGA-GA-TTGGGCCTAGTGGGC
1 CATATGAAT-ATGATTTGGGCCTAATGGGC
107198354 CATATG
1 CATATG
107198360 CATGTATGTA
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
28 19 0.34
29 36 0.64
30 1 0.02
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.30
Consensus pattern (29 bp):
CATATGAATATGATTTGGGCCTAATGGGC
Found at i:107198697 original size:27 final size:27
Alignment explanation
Indices: 107198646--107198697 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
107198636 TAATAAAGAG
* *
107198646 AAATTACCAAAATGCCCCTAAGTGTGA
1 AAATGACCAAAATACCCCTAAGTGTGA
* *
107198673 AAATGACCAAAATACCTCTATGTGT
1 AAATGACCAAAATACCCCTAAGTGT
107198698 TGAATGTAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.25
Consensus pattern (27 bp):
AAATGACCAAAATACCCCTAAGTGTGA
Found at i:107203244 original size:5 final size:5
Alignment explanation
Indices: 107203236--107203293 Score: 61
Period size: 5 Copynumber: 12.0 Consensus size: 5
107203226 ATCCTAATTT
*
107203236 AATAA AAT-A AATAA AA-ATA AATAA AA-AT AATAA AACT-A AATAA AATAA
1 AATAA AATAA AATAA AATA-A AATAA AATAA AATAA AA-TAA AATAA AATAA
107203284 AATAA AATAA
1 AATAA AATAA
107203294 TATCTTCTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
4 9 0.20
5 34 0.76
6 2 0.04
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:107203254 original size:10 final size:10
Alignment explanation
Indices: 107203239--107203290 Score: 72
Period size: 10 Copynumber: 5.3 Consensus size: 10
107203229 CTAATTTAAT
107203239 AAAATAAATA
1 AAAATAAATA
107203249 AAAATAAATA
1 AAAATAAATA
107203259 AAAAT-AATA
1 AAAATAAATA
*
107203268 AAACTAAAT-
1 AAAATAAATA
107203277 AAAATAAAATA
1 AAAAT-AAATA
107203288 AAA
1 AAA
107203291 TAATATCTTC
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
9 12 0.32
10 22 0.59
11 3 0.08
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (10 bp):
AAAATAAATA
Found at i:107203258 original size:19 final size:19
Alignment explanation
Indices: 107203236--107203290 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 19
107203226 ATCCTAATTT
107203236 AATAAAATAAATAAAAATA
1 AATAAAATAAATAAAAATA
*
107203255 AATAAAA-ATAATAAAACTA
1 AATAAAATA-AATAAAAATA
107203274 AATAAAATAAAATAAAA
1 AATAAAAT-AAATAAAA
107203291 TAATATCTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
18 1 0.03
19 23 0.72
20 7 0.22
21 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (19 bp):
AATAAAATAAATAAAAATA
Found at i:107203266 original size:28 final size:28
Alignment explanation
Indices: 107203235--107203295 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
107203225 AATCCTAATT
107203235 TAATAAAA-TAAATAAAA-ATAAATAAAAA
1 TAATAAAACTAAATAAAATA-AAAT-AAAA
107203263 TAATAAAACTAAATAAAATAAAATAAAA
1 TAATAAAACTAAATAAAATAAAATAAAA
107203291 TAATA
1 TAATA
107203296 TCTTCTATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
28 17 0.55
29 13 0.42
30 1 0.03
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (28 bp):
TAATAAAACTAAATAAAATAAAATAAAA
Found at i:107211133 original size:27 final size:27
Alignment explanation
Indices: 107211103--107211180 Score: 120
Period size: 27 Copynumber: 2.9 Consensus size: 27
107211093 ATCGTTAGTC
* * *
107211103 CTACCCTATAGGGGTATTTTGGTATTT
1 CTACCCTACAAGGGTATTTCGGTATTT
*
107211130 CTACCCTACAAGGGTATTTCGATATTT
1 CTACCCTACAAGGGTATTTCGGTATTT
107211157 CTACCCTACAAGGGTATTTCGGTA
1 CTACCCTACAAGGGTATTTCGGTA
107211181 ATTTTGTAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (27 bp):
CTACCCTACAAGGGTATTTCGGTATTT
Found at i:107211207 original size:27 final size:27
Alignment explanation
Indices: 107211177--107211253 Score: 91
Period size: 27 Copynumber: 2.9 Consensus size: 27
107211167 AGGGTATTTC
107211177 GGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTTTGTAAATCGAGGGTAAAAT
* ***
107211204 GGTAATTTTGTAAATCGGGGGTACTTT
1 GGTAATTTTGTAAATCGAGGGTAAAAT
** *
107211231 GGTAATTTTACAAGTCGAGGGTA
1 GGTAATTTTGTAAATCGAGGGTA
107211254 TTTTAGTAAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.30, C:0.06, G:0.29, T:0.35
Consensus pattern (27 bp):
GGTAATTTTGTAAATCGAGGGTAAAAT
Found at i:107211262 original size:27 final size:27
Alignment explanation
Indices: 107211203--107211486 Score: 347
Period size: 27 Copynumber: 10.5 Consensus size: 27
107211193 GAGGGTAAAA
** * * *
107211203 TGGTAATTTTGTAAATCGGGGGTACTT
1 TGGTAATTTTACAAACCAGGGGTATTT
**
107211230 TGGTAATTTTACAAGTC-GAGGGTATTT
1 TGGTAATTTTACAAACCAG-GGGTATTT
* ***
107211257 TAGTAATTTTACAGGTC-GAGGGTATTT
1 TGGTAATTTTACAAACCAG-GGGTATTT
** * * *
107211284 CAGTAATGTCACAAATCAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
*
107211311 TGGTAATTTTACAAACTAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
107211338 TGGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
107211365 TGGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
*
107211392 TGGTAATTTTACAAACCACGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
* *
107211419 AGGTAATTTTACAAACTAGGGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
*
107211446 TGGTAATTTTACAAACCAGTGGTATTT
1 TGGTAATTTTACAAACCAGGGGTATTT
107211473 TGGTAATTTTACAA
1 TGGTAATTTTACAA
107211487 CTTATTTACT
Statistics
Matches: 230, Mismatches: 25, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
26 1 0.00
27 228 0.99
28 1 0.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.38
Consensus pattern (27 bp):
TGGTAATTTTACAAACCAGGGGTATTT
Found at i:107222418 original size:42 final size:42
Alignment explanation
Indices: 107222257--107222414 Score: 151
Period size: 42 Copynumber: 3.8 Consensus size: 42
107222247 CGGGCATACC
* * * *
107222257 AATGCCATATCCCAGATATGGTCTTACA-TGTAATATTATATT
1 AATGCCATATCCCAGATATGGTCTTACACAGAAATCTAATA-T
* * * * *
107222299 GATGCCAATAGCCCAGCTATAGTCTTACACA-AAATCTCATAT
1 AATGCC-ATATCCCAGATATGGTCTTACACAGAAATCTAATAT
* * * *
107222341 GATGCCATATCCTAGATATGGTCTTACAC-GAAGTCTAATGCT
1 AATGCCATATCCCAGATATGGTCTTACACAGAAATCTAAT-AT
107222383 AATGCCATATCCCAGATATGGTCTTACACAGA
1 AATGCCATATCCCAGATATGGTCTTACACAGA
107222415 GTCTCAGCAA
Statistics
Matches: 94, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
41 26 0.28
42 40 0.43
43 28 0.30
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (42 bp):
AATGCCATATCCCAGATATGGTCTTACACAGAAATCTAATAT
Found at i:107222590 original size:12 final size:12
Alignment explanation
Indices: 107222573--107222600 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
107222563 AATGCATTAT
107222573 TTACATACAAAC
1 TTACATACAAAC
107222585 TTACATACAAAC
1 TTACATACAAAC
107222597 TTAC
1 TTAC
107222601 CTCGGTACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.25, G:0.00, T:0.29
Consensus pattern (12 bp):
TTACATACAAAC
Found at i:107226789 original size:13 final size:13
Alignment explanation
Indices: 107226767--107226799 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
107226757 ACTAATACAT
*
107226767 GTTTGCCTAAGGG
1 GTTTGACTAAGGG
107226780 GTTTGACTAAGGG
1 GTTTGACTAAGGG
107226793 GTTTGAC
1 GTTTGAC
107226800 ACTCTAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.18, C:0.12, G:0.36, T:0.33
Consensus pattern (13 bp):
GTTTGACTAAGGG
Found at i:107229445 original size:14 final size:14
Alignment explanation
Indices: 107229423--107229452 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
107229413 AAAAGGGGAG
107229423 TAAGCTTTAAAGCT
1 TAAGCTTTAAAGCT
*
107229437 TAAGTTTTAAAGCT
1 TAAGCTTTAAAGCT
107229451 TA
1 TA
107229453 GCAAGTTCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.40
Consensus pattern (14 bp):
TAAGCTTTAAAGCT
Found at i:107229875 original size:85 final size:84
Alignment explanation
Indices: 107229739--107229900 Score: 209
Period size: 85 Copynumber: 1.9 Consensus size: 84
107229729 CACACGGTAC
* * * * * *
107229739 CATACCAATGCCATATCCCAGCTATGGTCTTACATGTAATCTCGTATTGATGCCAATAGCCCAGC
1 CATACCAATACCATATCCCAGATATGGTCTTACACGTAATCTCATACTGATGCC-ATAGCCCAGA
107229804 TATGGTCTTACACGAAATCT
65 TATGGTCTTACACGAAATCT
* * * *
107229824 CATATCAATACCATATCCTAGATATGGTTTTACACG-AAGTCTCATACTGATGCCATATCCCAGA
1 CATACCAATACCATATCCCAGATATGGTCTTACACGTAA-TCTCATACTGATGCCATAGCCCAGA
107229888 TATGGTCTTACAC
65 TATGGTCTTACAC
107229901 ATAGTCTCAG
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
84 23 0.35
85 43 0.65
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (84 bp):
CATACCAATACCATATCCCAGATATGGTCTTACACGTAATCTCATACTGATGCCATAGCCCAGAT
ATGGTCTTACACGAAATCT
Found at i:107229909 original size:42 final size:41
Alignment explanation
Indices: 107229746--107229900 Score: 175
Period size: 42 Copynumber: 3.7 Consensus size: 41
107229736 TACCATACCA
* * * *
107229746 ATGCCATATCCCAGCTATGGTCTTACATGTAATCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATA-TG
* * *
107229788 ATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCATATCA
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATAT-G
* * * *
107229831 ATACCATATCCTAGATATGGTTTTACACGAAGTCTCATACTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATA-TG
107229873 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
107229901 ATAGTCTCAG
Statistics
Matches: 95, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
42 60 0.63
43 35 0.37
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATG
Found at i:107241818 original size:27 final size:28
Alignment explanation
Indices: 107241788--107241887 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
107241778 ATAGTGAGTC
107241788 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
107241815 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
107241843 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
107241874 CGCACACTTAGTGC
1 CGCACACTTAGTGC
107241888 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:107242739 original size:7 final size:7
Alignment explanation
Indices: 107242729--107242753 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
107242719 TCATCACCAC
107242729 AACATCA
1 AACATCA
107242736 AACATCA
1 AACATCA
107242743 AACATCA
1 AACATCA
107242750 AACA
1 AACA
107242754 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:107249683 original size:27 final size:28
Alignment explanation
Indices: 107249653--107249752 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
107249643 ATAGTGAGTC
107249653 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
107249680 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
107249708 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
107249739 CGCACACTTAGTGC
1 CGCACACTTAGTGC
107249753 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:107250610 original size:7 final size:7
Alignment explanation
Indices: 107250600--107250624 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
107250590 TCATCACCAC
107250600 AACATCA
1 AACATCA
107250607 AACATCA
1 AACATCA
107250614 AACATCA
1 AACATCA
107250621 AACA
1 AACA
107250625 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:107252636 original size:49 final size:49
Alignment explanation
Indices: 107252577--107252699 Score: 176
Period size: 49 Copynumber: 2.5 Consensus size: 49
107252567 ATTGATGCTG
*
107252577 TGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG-GCCGATGCCA
1 TGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GTGCCGATGCCA
* * * *
107252626 TGTCCTAGACAGGTCTTACACTGGCTCTCATCTATCGGTGTCGATGCCA
1 TGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGCCGATGCCA
*
107252675 TGTCCCAAACAGGTCTTACACTGAC
1 TGTCCCAGACAGGTCTTACACTGAC
107252700 ACATAACAAG
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
48 1 0.02
49 64 0.98
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
TGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGCCGATGCCA
Found at i:107260415 original size:49 final size:49
Alignment explanation
Indices: 107260362--107260476 Score: 149
Period size: 49 Copynumber: 2.3 Consensus size: 49
107260352 CGTATCCTAG
* * * *
107260362 ACAGGACTTACACTGATTTTCATATATCAAAGTCGATGCCTTGTCCCAA
1 ACAGGTCTTACACTGACTCTCATATATCAAAGTCGATGCCATGTCCCAA
* * **
107260411 ACAGGTCTTACACTGGCTCTCATCTATCAGTGTCGATGCCATGTCCCAA
1 ACAGGTCTTACACTGACTCTCATATATCAAAGTCGATGCCATGTCCCAA
*
107260460 ACAAGTCTTACACTGAC
1 ACAGGTCTTACACTGAC
107260477 ACACAACAAG
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 56 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (49 bp):
ACAGGTCTTACACTGACTCTCATATATCAAAGTCGATGCCATGTCCCAA
Found at i:107260506 original size:22 final size:22
Alignment explanation
Indices: 107260450--107260511 Score: 56
Period size: 22 Copynumber: 2.8 Consensus size: 22
107260440 GTGTCGATGC
*
107260450 CATGTCCCAAACAAGTCTTACA
1 CATGTCCCAAACAAGTCTGACA
* *
107260472 C-TGACACACAACAAG-CTGACA
1 CATGTCCCA-AACAAGTCTGACA
*
107260493 TCATGTCCCAAACAGGTCT
1 -CATGTCCCAAACAAGTCT
107260512 TATACTAGCT
Statistics
Matches: 30, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
21 10 0.33
22 13 0.43
23 7 0.23
ACGTcount: A:0.35, C:0.32, G:0.13, T:0.19
Consensus pattern (22 bp):
CATGTCCCAAACAAGTCTGACA
Found at i:107276139 original size:40 final size:40
Alignment explanation
Indices: 107276095--107276271 Score: 273
Period size: 40 Copynumber: 4.4 Consensus size: 40
107276085 CAGAAAATCT
*
107276095 GATGAAGTATGTATTAACAGAAAACTGTATAATTTATCCG
1 GATGAAGTATGTATTAACAGAAAACTGTATAATTTATCCA
* * *
107276135 GATGAAGTATGTATTAATAGAAAAATGTATAATTTACCCA
1 GATGAAGTATGTATTAACAGAAAACTGTATAATTTATCCA
* * *
107276175 GATAAAGTATGTATTAATAGAAAACTATATAATTTATCCA
1 GATGAAGTATGTATTAACAGAAAACTGTATAATTTATCCA
* *
107276215 GATGAAGTATGTATTAACAGAAAACTGTATAATTTAACCG
1 GATGAAGTATGTATTAACAGAAAACTGTATAATTTATCCA
107276255 GATGAAGTATGTATTAA
1 GATGAAGTATGTATTAA
107276272 TAGATATACT
Statistics
Matches: 124, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 124 1.00
ACGTcount: A:0.44, C:0.08, G:0.16, T:0.33
Consensus pattern (40 bp):
GATGAAGTATGTATTAACAGAAAACTGTATAATTTATCCA
Found at i:107276853 original size:17 final size:17
Alignment explanation
Indices: 107276833--107276865 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
107276823 ATAATGAATG
107276833 TTATTAAATTATATTTT
1 TTATTAAATTATATTTT
107276850 TTATTAAATTATATTT
1 TTATTAAATTATATTT
107276866 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTAAATTATATTTT
Found at i:107277125 original size:16 final size:15
Alignment explanation
Indices: 107277104--107277158 Score: 65
Period size: 16 Copynumber: 3.5 Consensus size: 15
107277094 TGAATTACTT
107277104 ATTACAGTTCTATTCC
1 ATTACAG-TCTATTCC
*
107277120 ATTACAGCTCTATTCT
1 ATTACAG-TCTATTCC
*
107277136 ATTACAGCCTTATTCC
1 ATTACAGTC-TATTCC
107277152 ATTACAG
1 ATTACAG
107277159 CCAACCAAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
15 1 0.03
16 33 0.97
ACGTcount: A:0.27, C:0.25, G:0.07, T:0.40
Consensus pattern (15 bp):
ATTACAGTCTATTCC
Found at i:107277159 original size:16 final size:17
Alignment explanation
Indices: 107277112--107277160 Score: 75
Period size: 16 Copynumber: 3.0 Consensus size: 17
107277102 TTATTACAGT
107277112 TCTATTCCATTACAG-C
1 TCTATTCCATTACAGCC
*
107277128 TCTATTCTATTACAGCC
1 TCTATTCCATTACAGCC
107277145 T-TATTCCATTACAGCC
1 TCTATTCCATTACAGCC
107277161 AACCAAACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 28 0.93
17 2 0.07
ACGTcount: A:0.24, C:0.31, G:0.06, T:0.39
Consensus pattern (17 bp):
TCTATTCCATTACAGCC
Found at i:107277575 original size:27 final size:27
Alignment explanation
Indices: 107277545--107277628 Score: 66
Period size: 27 Copynumber: 3.2 Consensus size: 27
107277535 GAAGACGATC
107277545 AAGACCCACACAAGGGAAGTTCTCGTA
1 AAGACCCACACAAGGGAAGTTCTCGTA
** * ** ** *
107277572 AAGACAGA-AGAATTGAA-TT-GGGATC
1 AAGACCCACACAAGGGAAGTTCTCG-TA
107277597 AAGACCCACACAAGGGAAGTTCTCGTA
1 AAGACCCACACAAGGGAAGTTCTCGTA
107277624 AAGAC
1 AAGAC
107277629 AGAAGAATTG
Statistics
Matches: 37, Mismatches: 16, Indels: 8
0.61 0.26 0.13
Matches are distributed among these distances:
24 1 0.03
25 9 0.24
26 12 0.32
27 14 0.38
28 1 0.03
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.15
Consensus pattern (27 bp):
AAGACCCACACAAGGGAAGTTCTCGTA
Found at i:107277603 original size:52 final size:52
Alignment explanation
Indices: 107277541--107277644 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
107277531 TAAAGAAGAC
107277541 GATCAAGACCCACACAAGGGAAGTTCTCGTAAAGACAGAAGAATTGAATTGG
1 GATCAAGACCCACACAAGGGAAGTTCTCGTAAAGACAGAAGAATTGAATTGG
107277593 GATCAAGACCCACACAAGGGAAGTTCTCGTAAAGACAGAAGAATTGAATTGG
1 GATCAAGACCCACACAAGGGAAGTTCTCGTAAAGACAGAAGAATTGAATTGG
107277645 AATATAGAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.17
Consensus pattern (52 bp):
GATCAAGACCCACACAAGGGAAGTTCTCGTAAAGACAGAAGAATTGAATTGG
Found at i:107280565 original size:22 final size:22
Alignment explanation
Indices: 107280523--107280567 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
107280513 AAATTGTAAG
*
107280523 ATTTTATAAAATTATAAAAAAA
1 ATTTTATAAAATCATAAAAAAA
*
107280545 ATTTTATAAAATGCATCAAAAAA
1 ATTTTATAAAAT-CATAAAAAAA
107280568 CTCTTTAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (22 bp):
ATTTTATAAAATCATAAAAAAA
Found at i:107280886 original size:28 final size:29
Alignment explanation
Indices: 107280826--107280898 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 29
107280816 TTTTATATTT
* * * *
107280826 TTTTCTAATTTTTAATAAGATTTAAATAT
1 TTTTATAATTTTTATTAAAATTTAAATAC
107280855 TTTTAT-ATTTTTATTAAAATTT-AATAAC
1 TTTTATAATTTTTATTAAAATTTAAAT-AC
*
107280883 TTTTATAACTTTTATT
1 TTTTATAATTTTTATT
107280899 GATTCTTATT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 3 0.08
28 21 0.57
29 13 0.35
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.59
Consensus pattern (29 bp):
TTTTATAATTTTTATTAAAATTTAAATAC
Found at i:107281249 original size:85 final size:88
Alignment explanation
Indices: 107281037--107281250 Score: 256
Period size: 85 Copynumber: 2.4 Consensus size: 88
107281027 CCTTTTGATA
* *
107281037 CATTTTGACAGTTCAAGTACCCAATTGCATGTAAAAAAAAAAGAAGGCATTTAATTGTTTTTTCT
1 CATTTTGAAAGTTCAAGTACCCAATTG-A-GTAAAAAAAAAAGAAGGCA-TTAATTGTTGTTTCT
* *
107281102 GAAAAAGTTTGAGGGCCATTTTTATG
63 AAAAAAGTTTGAGAGCCATTTTTATG
* * ** *
107281128 CATTTTGAAAATTCAAGTACCTAATTGAGTGCAAAAAAATG-A-GC-TTAATTGCTTGTTT-TAA
1 CATTTTGAAAGTTCAAGTACCCAATTGAGTAAAAAAAAAAGAAGGCATTAATTG-TTGTTTCTAA
*
107281189 AAAAGTTTGAGAGCCTTTTTTATG
65 AAAAGTTTGAGAGCCATTTTTATG
* *
107281213 CATTTTGAAAGTTCAAATACCCAATTGAATAAAAAAAA
1 CATTTTGAAAGTTCAAGTACCCAATTGAGTAAAAAAAA
107281251 TGTTTTTTTT
Statistics
Matches: 106, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
85 63 0.59
86 5 0.05
87 2 0.02
88 1 0.01
89 10 0.09
90 1 0.01
91 24 0.23
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (88 bp):
CATTTTGAAAGTTCAAGTACCCAATTGAGTAAAAAAAAAAGAAGGCATTAATTGTTGTTTCTAAA
AAAGTTTGAGAGCCATTTTTATG
Found at i:107283411 original size:31 final size:30
Alignment explanation
Indices: 107283355--107283412 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
107283345 TAGCAAAATT
* *
107283355 AACAATAAAACAAGAGTTATACAATATCCA
1 AACAATAAAACAAGAATAATACAATATCCA
107283385 AACAATAACAACAA-AATAATAGCAATAT
1 AACAATAA-AACAAGAATAATA-CAATAT
107283413 AGTAGTGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 13 0.54
31 11 0.46
ACGTcount: A:0.60, C:0.16, G:0.05, T:0.19
Consensus pattern (30 bp):
AACAATAAAACAAGAATAATACAATATCCA
Found at i:107291893 original size:8 final size:8
Alignment explanation
Indices: 107291880--107291908 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
107291870 AGGGTATGAG
107291880 ATTTAAAT
1 ATTTAAAT
107291888 ATTTAAAT
1 ATTTAAAT
107291896 ATTTAAAT
1 ATTTAAAT
107291904 ATTTA
1 ATTTA
107291909 TACTATTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
ATTTAAAT
Found at i:107293323 original size:30 final size:29
Alignment explanation
Indices: 107293287--107293411 Score: 124
Period size: 29 Copynumber: 4.3 Consensus size: 29
107293277 AAGTATAAAA
* * * *
107293287 ATACAAATGTGACTATTTATAGGGTTTGAT
1 ATACAAATGTGAATA-ATATAGGGTATAAT
107293317 ATACAAATGTGAATAATATAGGGTATAAT
1 ATACAAATGTGAATAATATAGGGTATAAT
* ** * *
107293346 ATACAAAGGTGAATAATGCAAGGTATGAT
1 ATACAAATGTGAATAATATAGGGTATAAT
* * *
107293375 ATACAAATGTGAATAATACAAGGTATGAT
1 ATACAAATGTGAATAATATAGGGTATAAT
*
107293404 ATGCAAAT
1 ATACAAAT
107293412 ATGAGTGACA
Statistics
Matches: 83, Mismatches: 12, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
29 69 0.83
30 14 0.17
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.30
Consensus pattern (29 bp):
ATACAAATGTGAATAATATAGGGTATAAT
Found at i:107293347 original size:29 final size:29
Alignment explanation
Indices: 107293313--107293411 Score: 144
Period size: 29 Copynumber: 3.4 Consensus size: 29
107293303 TTATAGGGTT
* *
107293313 TGATATACAAATGTGAATAATATAGGGTA
1 TGATATACAAATGTGAATAATACAAGGTA
* * *
107293342 TAATATACAAAGGTGAATAATGCAAGGTA
1 TGATATACAAATGTGAATAATACAAGGTA
107293371 TGATATACAAATGTGAATAATACAAGGTA
1 TGATATACAAATGTGAATAATACAAGGTA
*
107293400 TGATATGCAAAT
1 TGATATACAAAT
107293412 ATGAGTGACA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.46, C:0.06, G:0.19, T:0.28
Consensus pattern (29 bp):
TGATATACAAATGTGAATAATACAAGGTA
Found at i:107300044 original size:37 final size:37
Alignment explanation
Indices: 107299991--107300112 Score: 217
Period size: 37 Copynumber: 3.3 Consensus size: 37
107299981 TATAAAAGAA
*
107299991 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
107300028 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
107300065 GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
107300102 GTCTCACCCGG
1 GTCTTACCCGG
107300113 AACATATTCC
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 82 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:107300269 original size:49 final size:49
Alignment explanation
Indices: 107300214--107300428 Score: 358
Period size: 49 Copynumber: 4.4 Consensus size: 49
107300204 TTTTACATTA
*
107300214 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
107300263 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
107300312 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* * * *
107300361 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* * *
107300410 GTCATTCGGCCTTATCACA
1 GCCATTAGGCCTCATCACA
107300429 CATATATGTA
Statistics
Matches: 158, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 158 1.00
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.28
Consensus pattern (49 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
Found at i:107303762 original size:29 final size:29
Alignment explanation
Indices: 107303725--107304062 Score: 622
Period size: 29 Copynumber: 11.7 Consensus size: 29
107303715 TGTTGAAAAA
* * *
107303725 CTCGTACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
107303754 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
107303783 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
107303812 CTCGCACACATGGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
107303841 CTCGCACACATGGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
107303870 CTCGCACACATGGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
107303899 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
107303928 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
107303957 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
107303986 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
107304015 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
107304044 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
107304063 AATCATTCGC
Statistics
Matches: 304, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 304 1.00
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:107306209 original size:37 final size:37
Alignment explanation
Indices: 107306156--107306277 Score: 217
Period size: 37 Copynumber: 3.3 Consensus size: 37
107306146 TATAAAAGAA
*
107306156 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
107306193 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
107306230 GTCTTACCCGGTCATAACCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
107306267 GTCTCACCCGG
1 GTCTTACCCGG
107306278 AACATATTCC
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 82 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:107306434 original size:49 final size:49
Alignment explanation
Indices: 107306379--107306642 Score: 447
Period size: 49 Copynumber: 5.4 Consensus size: 49
107306369 TTTTACATTA
*
107306379 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
*
107306428 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
107306477 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
107306526 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* * * *
107306575 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* * *
107306624 GTCATTCGGCCTTATCACA
1 GCCATTAGGCCTCATCACA
107306643 CATATATGTA
Statistics
Matches: 207, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 207 1.00
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.28
Consensus pattern (49 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
Found at i:107309280 original size:19 final size:20
Alignment explanation
Indices: 107309256--107309297 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
107309246 TTCATCAATA
* *
107309256 TTCACTAGAAAAAGAAG-TT
1 TTCACTACAAAAACAAGATT
107309275 TTCACTACAAAAACAAGATT
1 TTCACTACAAAAACAAGATT
107309295 TTC
1 TTC
107309298 TTTTTCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.45, C:0.17, G:0.10, T:0.29
Consensus pattern (20 bp):
TTCACTACAAAAACAAGATT
Found at i:107311386 original size:47 final size:47
Alignment explanation
Indices: 107311277--107311387 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
107311267 CCGGGATAAG
*
107311277 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
107311324 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
107311371 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
107311388 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:107318636 original size:47 final size:47
Alignment explanation
Indices: 107318527--107318637 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
107318517 CCGGGATAAG
*
107318527 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
107318574 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
107318621 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
107318638 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:107319411 original size:4 final size:4
Alignment explanation
Indices: 107319394--107319429 Score: 56
Period size: 4 Copynumber: 9.2 Consensus size: 4
107319384 AAATTTCCCT
*
107319394 TTTC TTTT TTTC TTTC TTTC TTTC -TTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
107319430 CACGTTTGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 3 0.10
4 26 0.90
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTC
Done.