Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 343 of 433
Found at i:107720227 original size:42 final size:42
Alignment explanation
Indices: 107720180--107720286 Score: 178
Period size: 42 Copynumber: 2.5 Consensus size: 42
107720170 TATTGGTCTC
* *
107720180 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAATATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACAGTGACAAGATT
107720222 GGCACTAAGTGTGCGGGTATAAATGGACACAGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACAGTGACAAGATT
* *
107720264 GGCACTACGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
107720287 ATTGTACAGC
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.30, C:0.15, G:0.32, T:0.23
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACAGTGACAAGATT
Found at i:107720351 original size:27 final size:28
Alignment explanation
Indices: 107720294--107720363 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
107720284 AAAATTGTAC
**
107720294 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
107720322 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
107720349 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
107720364 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:107733167 original size:28 final size:28
Alignment explanation
Indices: 107733098--107733198 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
107733088 GACAAGATTG
* * * *
107733098 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
107733128 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
107733156 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
107733185 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
107733199 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:107737302 original size:199 final size:199
Alignment explanation
Indices: 107736957--107737360 Score: 763
Period size: 199 Copynumber: 2.0 Consensus size: 199
107736947 CACCATGACA
* * *
107736957 AAACATTTATTAAAGTCATGGAGAATAGTTTTATGATTGAACTATTATATGACTATAGCATGTAT
1 AAACTTTTATTAAAGTCATAGAGAATAGTTTTATGAATGAACTATTATATGACTATAGCATGTAT
*
107737022 AAATGTTTGGCAAAAATATGTGACTCATGTGGTTGTTCTTCGATTAGACATTATGTATTAATTGT
66 AAATGTTTGGCAAAAATATGTGACTCATGTGGTTGTTCTTCAATTAGACATTATGTATTAATTGT
107737087 ATTAGTTTCTTTGTAAATATTTATAAAGACATTAGTTTGTATAATATATTGACATGACATATTAA
131 ATTAGTTTCTTTGTAAATATTTATAAAGACATTAGTTTGTATAATATATTGACATGACATATTAA
107737152 GTAT
196 GTAT
107737156 AAACTTTTATTAAAGTCATAGAGAATAGTTTTATGAATGAACTATTATATGACTATAGCATGTAT
1 AAACTTTTATTAAAGTCATAGAGAATAGTTTTATGAATGAACTATTATATGACTATAGCATGTAT
107737221 AAATGTTTGGCAAAAATATGTGACTCATGTGGTTGTTCTTCAATTAGACATTATGTATTAATTGT
66 AAATGTTTGGCAAAAATATGTGACTCATGTGGTTGTTCTTCAATTAGACATTATGTATTAATTGT
*
107737286 ATTAGTTTCTTTGTAAATATTTATAAAGACATTAGTTTGTATAATATATTGACATGACGTATTAA
131 ATTAGTTTCTTTGTAAATATTTATAAAGACATTAGTTTGTATAATATATTGACATGACATATTAA
107737351 GTAT
196 GTAT
107737355 AAACTT
1 AAACTT
107737361 AATTGATATT
Statistics
Matches: 200, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
199 200 1.00
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.42
Consensus pattern (199 bp):
AAACTTTTATTAAAGTCATAGAGAATAGTTTTATGAATGAACTATTATATGACTATAGCATGTAT
AAATGTTTGGCAAAAATATGTGACTCATGTGGTTGTTCTTCAATTAGACATTATGTATTAATTGT
ATTAGTTTCTTTGTAAATATTTATAAAGACATTAGTTTGTATAATATATTGACATGACATATTAA
GTAT
Found at i:107741167 original size:42 final size:44
Alignment explanation
Indices: 107741111--107741204 Score: 115
Period size: 42 Copynumber: 2.2 Consensus size: 44
107741101 ATGATTTACG
* * *
107741111 TGTAAGA-CTATGTCTAGGACA-TCGACATCG-TATTTTATTTCT
1 TGTAAGACCTATGTCTAGGACAGT-GACATCGATATTTGATTGCA
*
107741153 TGTAAGACCT-TGTCTAGGACAGTGGCATCGATATTTGATTGCA
1 TGTAAGACCTATGTCTAGGACAGTGACATCGATATTTGATTGCA
107741196 TGTAAGACC
1 TGTAAGACC
107741205 ACGTTTGGGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
42 24 0.53
43 21 0.47
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (44 bp):
TGTAAGACCTATGTCTAGGACAGTGACATCGATATTTGATTGCA
Found at i:107741216 original size:43 final size:43
Alignment explanation
Indices: 107741067--107741223 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 43
107741057 TGTGTTTTCG
* * *
107741067 TGTAAGACCACGTCTGGGACATTGGCATCGACT-TATGATTTACG
1 TGTAAGACCACGTCTAGGACATTGGCATCGA-TATTTGA-TTACA
* * * * * * *
107741111 TGTAAGACTATGTCTAGGACATCGACATCG-TATTTTATTTCT
1 TGTAAGACCACGTCTAGGACATTGGCATCGATATTTGATTACA
** * *
107741153 TGTAAGACCTTGTCTAGGACAGTGGCATCGATATTTGATTGCA
1 TGTAAGACCACGTCTAGGACATTGGCATCGATATTTGATTACA
* *
107741196 TGTAAGACCACGTTTGGGACATTGGCAT
1 TGTAAGACCACGTCTAGGACATTGGCAT
107741224 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 22, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
42 29 0.33
43 35 0.39
44 25 0.28
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (43 bp):
TGTAAGACCACGTCTAGGACATTGGCATCGATATTTGATTACA
Found at i:107744869 original size:48 final size:47
Alignment explanation
Indices: 107744807--107745074 Score: 227
Period size: 49 Copynumber: 5.6 Consensus size: 47
107744797 TGATATGTGT
*
107744807 GCTAGTGTAAGACATGTCTGGGACATGCATCCGCCTCGAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA-TTAA
* * ** * * *
107744855 GCCAGTGTAAGACATGTCTGGGACATGCATTGGGATTGAGACGA--GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-TATTAA
* * *
107744901 GCTAGTGTAAGACATGTCTGGGACATACATCGGCCTCGCGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-TAA
* * * * *
107744949 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGC-CTCGAGATATTA-A
* * * ** *
107744998 GCTAGTGTAAGACCTGACTAGGACATGGCATCGGCCTCGCTATATGAAA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT-TAA
*
107745047 GCCAGTGTAAGACCATGTCTGGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
107745075 GCGTTGGCAT
Statistics
Matches: 176, Mismatches: 34, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
45 1 0.01
46 35 0.20
48 63 0.36
49 64 0.36
50 13 0.07
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATTAA
Found at i:107744968 original size:94 final size:94
Alignment explanation
Indices: 107744807--107745074 Score: 322
Period size: 94 Copynumber: 2.8 Consensus size: 94
107744797 TGATATGTGT
* * * *
107744807 GCTAGTGTAAGACATGTCTGGGACATGCATCCGCCTCGAGATATTTAAGCCAGTGTAAGACATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCGATA-TAAAGCCAGTGTAAGACCTGT
* ** **
107744872 CTGGGACATGCATTGGGATTG-AGACGAGA
65 CTGGGACATGCATCGACACCGAAGACGAGA
* *
107744901 GCTAGTGTAAGACATGTCTGGGACATACATCGGCCTCGCGATATACAAGCTAGTGTAAGACCTGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCGATATA-AAGCCAGTGTAAGACCTGT
*
107744966 CTGGGACATGGCATCGACACCGATAGATGAGA
65 CTGGGACAT-GCATCGACACCGA-AGACGAGA
* * * *
107744998 GCTAGTGTAAGACCTGACTAGGACATGGCATCGGCCTCGCTATATGAAAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGCGATAT-AAAGCCAGTGTAAGACC-T
107745063 GTCTGGGACATG
63 GTCTGGGACATG
107745075 GCGTTGGCAT
Statistics
Matches: 149, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
93 1 0.01
94 66 0.44
95 7 0.05
97 30 0.20
98 32 0.21
99 13 0.09
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCGATATAAAGCCAGTGTAAGACCTGTC
TGGGACATGCATCGACACCGAAGACGAGA
Found at i:107745005 original size:49 final size:49
Alignment explanation
Indices: 107744807--107745076 Score: 195
Period size: 48 Copynumber: 5.6 Consensus size: 49
107744797 TGATATGTGT
* * * *
107744807 GCTAGTGTAAGACATGTCTGGGACAT-GCATCCG-CCTCGAGATATTTA-A
1 GCTAGTGTAAGACCTGTCTGGGACATGGCAT-CGACCGCGATATA-TGAGA
* * * * *
107744855 GCCAGTGTAAGACATGTCTGGGACAT-GCATTG---G-GATTGAGACGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCGCGA-T-ATATGAGA
* * * *
107744901 GCTAGTGTAAGACATGTCTGGGACAT-ACATCGGCCTCGCGATATA-CA-A
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATC-GAC-CGCGATATATGAGA
*
107744949 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CGCGATATATGAGA
* * * * * *
107744998 GCTAGTGTAAGACCTGACTAGGACATGGCATCGGCCTCGCTATATGAAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCGCGATATATGAGA
*
107745047 GCCAGTGTAAGACCATGTCTGGGACATGGC
1 GCTAGTGTAAGACC-TGTCTGGGACATGGC
107745077 GTTGGCATCT
Statistics
Matches: 181, Mismatches: 27, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
44 2 0.01
45 1 0.01
46 31 0.17
47 8 0.04
48 60 0.33
49 60 0.33
50 15 0.08
51 2 0.01
52 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (49 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCGCGATATATGAGA
Found at i:107746311 original size:20 final size:21
Alignment explanation
Indices: 107746272--107746311 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
107746262 GTTACAATGA
*
107746272 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCATGTTGCCCTT
107746293 CCACACGGGCATG-TGCCCT
1 CCACACGGGCATGTTGCCCT
107746312 GTTTCAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACGGGCATGTTGCCCTT
Found at i:107748703 original size:14 final size:13
Alignment explanation
Indices: 107748684--107748715 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
107748674 TTAGATTTGG
107748684 AATTAATTAATCTT
1 AATTAATTAA-CTT
107748698 AATTAATTAACTT
1 AATTAATTAACTT
107748711 AATTA
1 AATTA
107748716 TGGCTTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (13 bp):
AATTAATTAACTT
Found at i:107749215 original size:217 final size:216
Alignment explanation
Indices: 107748832--107749260 Score: 614
Period size: 217 Copynumber: 2.0 Consensus size: 216
107748822 ATTATTGTTA
* * *
107748832 TTTAACTCCTTAAGCCCTACCTTAATTAAAACTCTATAGCGATTAGACTTTTAGAATTTAGTCCT
1 TTTAACTCCTTAAGCCATACCTTAATTAAAACTCTATAGCGATTAGACTTTTACAATTTAGACCT
* *
107748897 TGAGCTTTAATAACTATCTTATCAGCTAAATTACTTGACCACTCTTTATTATATTCACATATTAA
66 TAAGCTTTAATAACTAGCTTATCAGCTAAATTACTTGACCACTCTTTATTATATTCACATATTAA
* *** *
107748962 CTCTGTAAATATTCACATTTTATATTTTTGGACTCGGTTTATGG-AAATAAGGCTTCGAAA-TCG
131 CTCTGTAAATATTCACAATTTATATTTAAAGACTCGGTTCA-GGAAAATAAGGCTTCGAAACT-G
*
107749025 TATTTTTTGATATCACTGAGTTG
194 TATTTTCTGATATCACTGAGTTG
* *
107749048 TTTAACTCTTTAAGCCATATCTTAATTAAAACTCTATAGCGATTAGACTTTTACAATTTAGACCT
1 TTTAACTCCTTAAGCCATACCTTAATTAAAACTCTATAGCGATTAGACTTTTACAATTTAGACCT
* *
107749113 TAAGCTTTAATTAACTAGCTTAT-GGACTAAATTACTTGACCACTCTTTATTATATTCATATATT
66 TAAGCTTTAA-TAACTAGCTTATCAG-CTAAATTACTTGACCACTCTTTATTATATTCACATATT
* * * *
107749177 AACT-TCGTAAATATTCATAATTTATATTTAAAGACTCGGTTCAGGAAAATGAGGTTTTGAAACT
129 AACTCT-GTAAATATTCACAATTTATATTTAAAGACTCGGTTCAGGAAAATAAGGCTTCGAAACT
107749241 GTATTTTCTGATATCACTGA
193 GTATTTTCTGATATCACTGA
107749261 AAATCGGGTC
Statistics
Matches: 189, Mismatches: 19, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
216 73 0.39
217 115 0.61
218 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (216 bp):
TTTAACTCCTTAAGCCATACCTTAATTAAAACTCTATAGCGATTAGACTTTTACAATTTAGACCT
TAAGCTTTAATAACTAGCTTATCAGCTAAATTACTTGACCACTCTTTATTATATTCACATATTAA
CTCTGTAAATATTCACAATTTATATTTAAAGACTCGGTTCAGGAAAATAAGGCTTCGAAACTGTA
TTTTCTGATATCACTGAGTTG
Found at i:107753624 original size:23 final size:23
Alignment explanation
Indices: 107753590--107753634 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
107753580 TGATTTTTTT
* *
107753590 TACAATTTGTTTGGTAATTAATC
1 TACAATTAGTTTAGTAATTAATC
107753613 TACAATTAGTTTAGTAATTAAT
1 TACAATTAGTTTAGTAATTAAT
107753635 TATAATCAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.47
Consensus pattern (23 bp):
TACAATTAGTTTAGTAATTAATC
Found at i:107753663 original size:15 final size:16
Alignment explanation
Indices: 107753642--107753685 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
107753632 AATTATAATC
107753642 AACTTAATTAATC-TA
1 AACTTAATTAATCTTA
*
107753657 TAA-TTAATTAAACTTA
1 -AACTTAATTAATCTTA
107753673 AACTTAATTAATC
1 AACTTAATTAATC
107753686 AATTTGGGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (16 bp):
AACTTAATTAATCTTA
Found at i:107753681 original size:16 final size:16
Alignment explanation
Indices: 107753642--107753683 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
107753632 AATTATAATC
*
107753642 AACTTAATTAATCTAT
1 AACTTAATTAAACTAT
107753658 AA-TTAATTAAACT-T
1 AACTTAATTAAACTAT
107753672 AAACTTAATTAA
1 -AACTTAATTAA
107753684 TCAATTTGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 1 0.04
15 12 0.52
16 10 0.43
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (16 bp):
AACTTAATTAAACTAT
Found at i:107755073 original size:33 final size:33
Alignment explanation
Indices: 107755033--107755098 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
107755023 ATATTTTTGG
107755033 TATTTAGGCCTTAGGATTAAATATAAATAAACT
1 TATTTAGGCCTTAGGATTAAATATAAATAAACT
107755066 TATTTAGGCCTTAGGATTAAATATAAATAAACT
1 TATTTAGGCCTTAGGATTAAATATAAATAAACT
107755099 AAGTGTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.36
Consensus pattern (33 bp):
TATTTAGGCCTTAGGATTAAATATAAATAAACT
Found at i:107758032 original size:93 final size:92
Alignment explanation
Indices: 107757910--107758173 Score: 325
Period size: 92 Copynumber: 2.9 Consensus size: 92
107757900 ATATACGTAA
* * * * * *
107757910 CATAGCTAACGTACATGCGGTACAGTGCAATGCAGTAAACGGCTATACCAGTGACTT-T-GCAGT
1 CATAGCTAACGTACATGCAGTACAGTGCAATGCGGTGAACCGCTATACCAGTAAATTGTGGC--T
*
107757973 TAAACTGCCAGATCAGATAAGTGTACATAG
64 T-AACTGCCAGATCAGATAAGGGTACATAG
* * * * **
107758003 CATAGCTAACGTACATGCATTACAATGCAATGCGGTGAACCACTATAACAAAAAATTGTGGCTTA
1 CATAGCTAACGTACATGCAGTACAGTGCAATGCGGTGAACCGCTATACCAGTAAATTGTGGCTTA
*
107758068 ACTGCGAGATCAGATAAGGGTACATAG
66 ACTGCCAGATCAGATAAGGGTACATAG
* **
107758095 CATAGCTAACGTACATGCAGTACAGTGTAATGCGGTGAACCGCTATACCAGTAAATTGCCGCTTA
1 CATAGCTAACGTACATGCAGTACAGTGCAATGCGGTGAACCGCTATACCAGTAAATTGTGGCTTA
*
107758160 ACTGCCAAATCAGA
66 ACTGCCAGATCAGA
107758174 ATAGAATCAG
Statistics
Matches: 144, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
92 94 0.65
93 47 0.33
94 1 0.01
95 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (92 bp):
CATAGCTAACGTACATGCAGTACAGTGCAATGCGGTGAACCGCTATACCAGTAAATTGTGGCTTA
ACTGCCAGATCAGATAAGGGTACATAG
Found at i:107758609 original size:21 final size:21
Alignment explanation
Indices: 107758585--107758632 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
107758575 CACACGGCCG
* *
107758585 TGTGGACCGGTGACAAAGCCA
1 TGTGAACCGGGGACAAAGCCA
**
107758606 TGTGAACCGGGGACATGGCCA
1 TGTGAACCGGGGACAAAGCCA
107758627 TGTGAA
1 TGTGAA
107758633 TAGGCCGTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.21, G:0.35, T:0.17
Consensus pattern (21 bp):
TGTGAACCGGGGACAAAGCCA
Found at i:107759375 original size:6 final size:5
Alignment explanation
Indices: 107759348--107759427 Score: 53
Period size: 5 Copynumber: 15.8 Consensus size: 5
107759338 TCCAAAAGAG
107759348 AAAAT AAAAT AAAAT AGAAAT AACAAT -AAAT -AAAT -AAAT -AAAT AATAACTT
1 AAAAT AAAAT AAAAT A-AAAT AA-AAT AAAAT AAAAT AAAAT AAAAT AA-AA--T
* *
107759399 AAAACT -AAAT AAAAT AAAAC ACAAT AAAA
1 AAAA-T AAAAT AAAAT AAAAT AAAAT AAAA
107759428 GGGCTCCCAA
Statistics
Matches: 63, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
4 16 0.25
5 31 0.49
6 11 0.17
7 2 0.03
8 3 0.05
ACGTcount: A:0.72, C:0.06, G:0.01, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:107759416 original size:15 final size:14
Alignment explanation
Indices: 107759348--107759427 Score: 65
Period size: 15 Copynumber: 5.3 Consensus size: 14
107759338 TCCAAAAGAG
107759348 AAAATAAAATAAAAT
1 AAAATAAAAT-AAAT
107759363 AGAAATAACAATAAAT
1 A-AAATAA-AATAAAT
107759379 -AAAT-AAATAAAT
1 AAAATAAAATAAAT
107759391 AATAACTTAAAACTAAAT
1 AA-AA--TAAAA-TAAAT
*
107759409 AAAATAAAACACAAT
1 AAAATAAAATA-AAT
107759424 AAAA
1 AAAA
107759428 GGGCTCCCAA
Statistics
Matches: 55, Mismatches: 1, Indels: 18
0.74 0.01 0.24
Matches are distributed among these distances:
12 7 0.13
13 2 0.04
14 7 0.13
15 13 0.24
16 11 0.20
17 8 0.15
18 7 0.13
ACGTcount: A:0.72, C:0.06, G:0.01, T:0.20
Consensus pattern (14 bp):
AAAATAAAATAAAT
Found at i:107762861 original size:5 final size:5
Alignment explanation
Indices: 107762853--107762920 Score: 54
Period size: 5 Copynumber: 13.8 Consensus size: 5
107762843 TCCAGAAGAG
* **
107762853 AAAAT AAAAT AAAAT AAACAT AAAAT -AAAT -AAAT -AAAT AATATT AACTT
1 AAAAT AAAAT AAAAT AAA-AT AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT
107762902 AAAACT -AAAT AAAAT AAAA
1 AAAA-T AAAAT AAAAT AAAA
107762921 CACAATAGAA
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
4 13 0.24
5 31 0.57
6 10 0.19
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (5 bp):
AAAAT
Found at i:107762875 original size:16 final size:15
Alignment explanation
Indices: 107762856--107762920 Score: 57
Period size: 16 Copynumber: 4.4 Consensus size: 15
107762846 AGAAGAGAAA
107762856 ATAAAATAAAATAAAC
1 ATAAAAT-AAATAAAC
107762872 ATAAAATAAAT-AA-
1 ATAAAATAAATAAAC
*
107762885 AT-AAATAATATTAAC
1 ATAAAATAA-ATAAAC
*
107762900 TTAAAACTAAATAAA-
1 ATAAAA-TAAATAAAC
107762915 ATAAAA
1 ATAAAA
107762921 CACAATAGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
12 6 0.15
13 4 0.10
14 4 0.10
15 10 0.24
16 14 0.34
17 3 0.07
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.25
Consensus pattern (15 bp):
ATAAAATAAATAAAC
Found at i:107766376 original size:9 final size:10
Alignment explanation
Indices: 107766305--107766380 Score: 50
Period size: 9 Copynumber: 7.4 Consensus size: 10
107766295 ACTTTTCCCC
107766305 AAAATGAAAAG
1 AAAA-GAAAAG
107766316 AAAAGAAAAG
1 AAAAGAAAAG
*
107766326 AAAACCAAAAAG
1 AAAA--GAAAAG
*
107766338 CAAAG-AAAG
1 AAAAGAAAAG
* *
107766347 AAAACATCCAA-
1 AAAAGA--AAAG
107766358 AAAAGAAAAG
1 AAAAGAAAAG
107766368 AAAAG-AAAG
1 AAAAGAAAAG
107766377 AAAA
1 AAAA
107766381 ATAAATAAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
9 17 0.33
10 15 0.29
11 9 0.18
12 10 0.20
ACGTcount: A:0.75, C:0.08, G:0.14, T:0.03
Consensus pattern (10 bp):
AAAAGAAAAG
Found at i:107766378 original size:4 final size:5
Alignment explanation
Indices: 107766305--107766380 Score: 50
Period size: 5 Copynumber: 14.8 Consensus size: 5
107766295 ACTTTTCCCC
* * *
107766305 AAAATG AAAAG AAAAG AAAAG AAAACCA AAAAG CAAAG -AAAG AAAAC
1 AAAA-G AAAAG AAAAG AAAAG AAAA--G AAAAG AAAAG AAAAG AAAAG
*
107766352 ATCCAA- AAAAG AAAAG AAAAG -AAAG AAAA
1 A--AAAG AAAAG AAAAG AAAAG AAAAG AAAA
107766381 ATAAATAAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
4 10 0.18
5 36 0.63
6 5 0.09
7 6 0.11
ACGTcount: A:0.75, C:0.08, G:0.14, T:0.03
Consensus pattern (5 bp):
AAAAG
Found at i:107766427 original size:15 final size:15
Alignment explanation
Indices: 107766407--107766436 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
107766397 AATATTAACT
*
107766407 TAAAACTAAATAAAA
1 TAAAACAAAATAAAA
107766422 TAAAACAAAATAAAA
1 TAAAACAAAATAAAA
107766437 AGGCTCCCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.17
Consensus pattern (15 bp):
TAAAACAAAATAAAA
Found at i:107771151 original size:25 final size:25
Alignment explanation
Indices: 107771122--107771182 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
107771112 TATGCATCAT
* * *
107771122 ATTGACTATTTGACCGATATGTCTG
1 ATTGACTATTCGACCAAAATGTCTG
*
107771147 ATTGACTATTCGATCAAAATGTCTG
1 ATTGACTATTCGACCAAAATGTCTG
107771172 ATTGACTATTC
1 ATTGACTATTC
107771183 AATTGGAAGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.39
Consensus pattern (25 bp):
ATTGACTATTCGACCAAAATGTCTG
Found at i:107774536 original size:56 final size:56
Alignment explanation
Indices: 107774445--107774564 Score: 213
Period size: 56 Copynumber: 2.1 Consensus size: 56
107774435 CTGTAAGTAC
107774445 TATAGAATATATGTCATCAAGAGACAAATTATATTTTAAAAATTATGCTATAACAAA
1 TATA-AATATATGTCATCAAGAGACAAATTATATTTTAAAAATTATGCTATAACAAA
* *
107774502 TATAAATATATGTCATCAAGAGATAGATTATATTTTAAAAATTATGCTATAACAAA
1 TATAAATATATGTCATCAAGAGACAAATTATATTTTAAAAATTATGCTATAACAAA
107774558 TATAAAT
1 TATAAAT
107774565 GATAATTTAG
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
56 57 0.93
57 4 0.07
ACGTcount: A:0.49, C:0.07, G:0.08, T:0.35
Consensus pattern (56 bp):
TATAAATATATGTCATCAAGAGACAAATTATATTTTAAAAATTATGCTATAACAAA
Found at i:107776607 original size:11 final size:11
Alignment explanation
Indices: 107776587--107776617 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
107776577 TCAAATCATC
*
107776587 AAGAATAAATT
1 AAGAACAAATT
107776598 AAGAACAAATT
1 AAGAACAAATT
107776609 AAGAACAAA
1 AAGAACAAA
107776618 ACTAGATGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.68, C:0.06, G:0.10, T:0.16
Consensus pattern (11 bp):
AAGAACAAATT
Found at i:107791370 original size:14 final size:15
Alignment explanation
Indices: 107791344--107791372 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
107791334 ATAATAGCAC
107791344 TACTTACCTTTATAT
1 TACTTACCTTTATAT
107791359 TACTTA-CTTTATAT
1 TACTTACCTTTATAT
107791373 ATATATGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.28, C:0.17, G:0.00, T:0.55
Consensus pattern (15 bp):
TACTTACCTTTATAT
Found at i:107792088 original size:8 final size:8
Alignment explanation
Indices: 107792075--107792117 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
107792065 CTTTTATGTT
107792075 TTATTATA
1 TTATTATA
*
107792083 TTATTAAA
1 TTATTATA
*
107792091 TTATTATC
1 TTATTATA
*
107792099 TTA-AATA
1 TTATTATA
107792106 TTATTATA
1 TTATTATA
107792114 TTAT
1 TTAT
107792118 ATACTTAAGT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
7 5 0.18
8 23 0.82
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (8 bp):
TTATTATA
Found at i:107792106 original size:23 final size:23
Alignment explanation
Indices: 107792080--107792131 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
107792070 ATGTTTTATT
107792080 ATATTATTAAATTAT-TATCTTAA
1 ATATTATTAAATTATATA-CTTAA
*
107792103 ATATTATTATATTATATACTTAA
1 ATATTATTAAATTATATACTTAA
*
107792126 GTATTA
1 ATATTA
107792132 AGTATAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 24 0.92
24 2 0.08
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (23 bp):
ATATTATTAAATTATATACTTAA
Found at i:107793941 original size:37 final size:36
Alignment explanation
Indices: 107793891--107793977 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
107793881 TACGAAGTCT
107793891 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
107793927 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
107793964 TCACCCGGAACATA
1 T-ACCCGG-ACATA
107793978 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:107794115 original size:49 final size:49
Alignment explanation
Indices: 107794048--107794399 Score: 641
Period size: 49 Copynumber: 7.2 Consensus size: 49
107794038 TACCACATAT
* *
107794048 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
107794097 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
107794146 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
107794195 ATATATATACACTTTCACATTCGTCACCTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
107794244 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
107794293 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
107794342 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAT
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
107794391 ATATATATA
1 ATATATATA
107794400 TTATTATGTA
Statistics
Matches: 293, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 293 1.00
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:107798099 original size:40 final size:40
Alignment explanation
Indices: 107798055--107798286 Score: 340
Period size: 40 Copynumber: 5.8 Consensus size: 40
107798045 CCAGCATGAT
* * *
107798055 TGCTCTTCGGGACCTAG-CCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCC-GGATACATCATTAGCACGAA
*
107798095 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
*
107798135 TGCTCTTCGGAACTTAGTCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
* * * *
107798175 TGCTCTTCAGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
* * *
107798215 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
107798255 TGCTCTTCGGAACTTAGTCCGGATACATCATT
1 TGCTCTTCGGAACTTAGTCCGGATACATCATT
107798287 CTCAATTCTC
Statistics
Matches: 180, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 178 0.99
41 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
Found at i:107800216 original size:37 final size:36
Alignment explanation
Indices: 107800166--107800252 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
107800156 TACGAAGTCT
107800166 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
107800202 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
107800239 TCACCCGGAACATA
1 T-ACCCGG-ACATA
107800253 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:107800390 original size:49 final size:49
Alignment explanation
Indices: 107800323--107800573 Score: 448
Period size: 49 Copynumber: 5.1 Consensus size: 49
107800313 TACCACATAT
* *
107800323 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
107800372 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
107800421 ATATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
107800470 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
107800519 ATATATATACATTTTCACATTCATCACATCAGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
107800568 ATATAT
1 ATATAT
107800574 TATTATGTAC
Statistics
Matches: 193, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 193 1.00
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:107806787 original size:15 final size:15
Alignment explanation
Indices: 107806767--107806808 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
107806757 GCTATAAATG
107806767 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
107806782 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
107806797 GGATTTCCTTAT
1 GGATTTCCTTAT
107806809 TCTGGGCTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:107809154 original size:47 final size:47
Alignment explanation
Indices: 107809036--107809328 Score: 298
Period size: 47 Copynumber: 6.6 Consensus size: 47
107809026 ATGAAAAAAT
* ** * * *
107809036 GTGGTGATAAGTGGATATACCACAATTACACATATTGATACAAGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTC-ATTAAC
*
107809084 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
* *
107809131 ATGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG------TAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
* * *
107809169 GTGGTGCTAAGTGGATATTCCATGGTTACATATATTGATTCATTAAT
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
* *
107809216 GTGGTGCTAAGTGGATATACCGCGGTTA-A-ACA-TG------TAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
* *
107809254 GTGGTGCTAAGTGGATATGCCACGATTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
*
107809301 GTGGTGCTAAGTCGATATACCACGGTTA
1 GTGGTGCTAAGTGGATATACCACGGTTA
107809329 AACATGTAAC
Statistics
Matches: 200, Mismatches: 27, Indels: 37
0.76 0.10 0.14
Matches are distributed among these distances:
38 57 0.28
39 2 0.01
40 4 0.02
41 4 0.02
44 4 0.02
45 4 0.02
46 2 0.01
47 88 0.44
48 35 0.17
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (47 bp):
GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
Found at i:107809183 original size:38 final size:38
Alignment explanation
Indices: 107809127--107809373 Score: 224
Period size: 38 Copynumber: 6.0 Consensus size: 38
107809117 ATTGATTCAT
*
107809127 TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* * *
107809165 TAACGTGGTGCTAAGTGGATATTCCATGGTTACATATATTG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG
* *
107809206 ATTCATTAATGTGGTGCTAAGTGGATATACCGCGGTTAAACATG
1 ------TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* * *
107809250 TAACGTGGTGCTAAGTGGATATGCCACGATTACATATATTG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG
*
107809291 ATTCATTAACGTGGTGCTAAGTCGATATACCACGGTTAAACATG
1 ------TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* *
107809335 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
107809373 T
1 T
107809374 TAATTTGAAA
Statistics
Matches: 170, Mismatches: 21, Indels: 36
0.75 0.09 0.16
Matches are distributed among these distances:
38 93 0.55
39 2 0.01
40 4 0.02
41 4 0.02
44 4 0.02
45 4 0.02
46 2 0.01
47 57 0.34
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:107809222 original size:85 final size:85
Alignment explanation
Indices: 107809079--107809366 Score: 513
Period size: 85 Copynumber: 3.4 Consensus size: 85
107809069 ATTGATACAA
*
107809079 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTAAGTG
1 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTG
107809144 GATATACCACGGTTAAACAT
66 GATATACCACGGTTAAACAT
* * *
107809164 GTAACGTGGTGCTAAGTGGATATTCCATGGTTACATATATTGATTCATTAATGTGGTGCTAAGTG
1 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTG
*
107809229 GATATACCGCGGTTAAACAT
66 GATATACCACGGTTAAACAT
* *
107809249 GTAACGTGGTGCTAAGTGGATATGCCACGATTACATATATTGATTCATTAACGTGGTGCTAAGTC
1 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTG
107809314 GATATACCACGGTTAAACAT
66 GATATACCACGGTTAAACAT
107809334 GTAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 GTAACGTGGTGCTAAGTGGATATGCCACGGTTA
107809367 TACATGTTAA
Statistics
Matches: 191, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 191 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (85 bp):
GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTG
GATATACCACGGTTAAACAT
Found at i:107815295 original size:27 final size:27
Alignment explanation
Indices: 107815256--107815345 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
107815246 ACATGTTAGA
*
107815256 AAATGGAAACCTTTGTGGCAATCTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
107815283 AAATGGAAGCCTTTGTGGCAATCTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
* *
107815310 AAATGGAAGCTTTTGTGGCGTATCTA--
1 AAATGGAAGCCTTTGTGGC-AATCTATG
107815336 AAATGGAAGC
1 AAATGGAAGC
107815346 ATTCATGGAA
Statistics
Matches: 59, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
26 10 0.17
27 44 0.75
28 5 0.08
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (27 bp):
AAATGGAAGCCTTTGTGGCAATCTATG
Found at i:107817062 original size:37 final size:37
Alignment explanation
Indices: 107817009--107817099 Score: 146
Period size: 37 Copynumber: 2.4 Consensus size: 37
107816999 TTATTACGAA
*
107817009 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCAG
*
107817046 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCAG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCAG
*
107817083 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
107817100 TTCCAAGTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
37 45 0.92
38 4 0.08
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCAG
Found at i:107817337 original size:47 final size:47
Alignment explanation
Indices: 107817195--107817411 Score: 310
Period size: 47 Copynumber: 4.5 Consensus size: 47
107817185 TTTTACATTA
*
107817195 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCG
107817244 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATAT--ATACACTTTCACATTCATCACATCG
*
107817293 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
* * * *
107817340 GCCA-TACGGCCTTATCACACATATGCACTTTCGCATTCATCACATTG
1 GCCATTA-GGCCTTATCACATATATACACTTTCACATTCATCACATCG
* *
107817387 GCCATTCGGCCTTATCACACATATA
1 GCCATTAGGCCTTATCACATATATA
107817412 TGTATATCAT
Statistics
Matches: 157, Mismatches: 7, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
46 2 0.01
47 90 0.57
48 1 0.01
49 64 0.41
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (47 bp):
GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
Found at i:107817403 original size:22 final size:22
Alignment explanation
Indices: 107817331--107817405 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
107817321 TTTCACATTC
*
107817331 ATCACATTGGCCATACGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
107817353 ATCACACATAT-GCACTTTC-GCATT
1 AT--CACAT-TGGC-CATTCGGCCTT
107817377 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
107817400 ATCACA
1 ATCACA
107817406 CATATATGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 14
0.68 0.08 0.23
Matches are distributed among these distances:
22 13 0.32
23 11 0.27
24 11 0.27
25 6 0.15
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.29
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:107817412 original size:96 final size:97
Alignment explanation
Indices: 107817189--107817412 Score: 321
Period size: 96 Copynumber: 2.3 Consensus size: 97
107817179 CATATATTTT
* *
107817189 ACATTAGCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 ACATTGGCCATTAGGCCTTATCACACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
*
107817254 CTTATCACATATACATACACTTTCACATTCATC
66 CTTATCACACATA-ATACACTTTCACATTCATC
* * *
107817287 ACATCGGCCATTAGGCCTTAT--CACATATATACACTTTCACATTCATCACATTGGCCA-TACGG
1 ACATTGGCCATTAGGCCTTATCACACATATATACACTTTCACATTCACCACATCGGCCATTA-GG
* *
107817349 CCTTATCACACAT-ATGCACTTTCGCATTCATC
65 CCTTATCACACATAATACACTTTCACATTCATC
*
107817381 ACATTGGCCATTCGGCCTTATCACACATATAT
1 ACATTGGCCATTAGGCCTTATCACACATATAT
107817413 GTATATCATA
Statistics
Matches: 113, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
94 36 0.32
95 2 0.02
96 56 0.50
98 19 0.17
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (97 bp):
ACATTGGCCATTAGGCCTTATCACACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
CTTATCACACATAATACACTTTCACATTCATC
Found at i:107823506 original size:43 final size:44
Alignment explanation
Indices: 107823407--107823509 Score: 138
Period size: 42 Copynumber: 2.4 Consensus size: 44
107823397 TCTGGGATGT
* * *
107823407 TGGCATCGATATATGATTTACGTGTAAGACCATATCTGGGACAT
1 TGGCATCGATATTTGATTTACGTGTAAGACCATATCTAGGACAG
* * *
107823451 TGTCATCG-TATTTGATTT-CGTGTAAGACCCTATCTAGGATAG
1 TGGCATCGATATTTGATTTACGTGTAAGACCATATCTAGGACAG
107823493 TGGCATCGATATTTGAT
1 TGGCATCGATATTTGAT
107823510 ACATGTAAGA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 27 0.53
43 17 0.33
44 7 0.14
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (44 bp):
TGGCATCGATATTTGATTTACGTGTAAGACCATATCTAGGACAG
Found at i:107827141 original size:2 final size:2
Alignment explanation
Indices: 107827134--107827165 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
107827124 GAGCTTCCTT
*
107827134 GA GA GA GA GA GA GA GA GA GA GA GA GA AA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
107827166 TCCCTATTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
GA
Found at i:107832568 original size:18 final size:17
Alignment explanation
Indices: 107832547--107832597 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 17
107832537 TGAACTTCTC
107832547 TAAAAAATTATACTTTTT
1 TAAAAAATTATA-TTTTT
*
107832565 TAAATTAATTTATATTTTT
1 TAAA--AAATTATATTTTT
107832584 TAAAATAATTATAT
1 TAAAA-AATTATAT
107832598 ATATTTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 1 0.04
18 11 0.39
19 9 0.32
20 7 0.25
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (17 bp):
TAAAAAATTATATTTTT
Found at i:107832608 original size:22 final size:19
Alignment explanation
Indices: 107832554--107832605 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 19
107832544 CTCTAAAAAA
*
107832554 TTATACTTTTTTAAATTAAT
1 TTATA-TTTTTTAAAATAAT
107832574 TTATATTTTTTAAAATAAT
1 TTATATTTTTTAAAATAAT
107832593 TATATATATTTTT
1 T-TATAT-TTTTT
107832606 TAATTTATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 14 0.48
20 10 0.34
21 5 0.17
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (19 bp):
TTATATTTTTTAAAATAAT
Found at i:107843042 original size:23 final size:23
Alignment explanation
Indices: 107842973--107843042 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
107842963 TCATTAACAT
* *
107842973 TGTTCATGAATATGTTCAATTATA
1 TGTTCATGAACATGTTCGATTA-A
* *
107842997 TGTTCATGAACATGTTTGTTTAA
1 TGTTCATGAACATGTTCGATTAA
* *
107843020 TGTTCGTGAACATATTCGATTAA
1 TGTTCATGAACATGTTCGATTAA
107843043 GTTAAATAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
23 20 0.53
24 18 0.47
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44
Consensus pattern (23 bp):
TGTTCATGAACATGTTCGATTAA
Found at i:107849009 original size:30 final size:30
Alignment explanation
Indices: 107848968--107849082 Score: 81
Period size: 30 Copynumber: 3.6 Consensus size: 30
107848958 GGGTTTATTG
*
107848968 TATATACAATATATATATTAGTGGGTGTTA
1 TATATATAATATATATATTAGTGGGTGTTA
* * * *
107848998 TATATATAATATATAAATGAGGGATTCGGTAATATA
1 TATATATAATATATATATTA--G--TGGGT-GT-TA
*
107849034 TATATATATATATATATATATGAGTGGG-GTTG
1 TATATATA-ATATATATAT-T-AGTGGGTGTTA
107849066 TATATAT-ATATATATAT
1 TATATATAATATATATAT
107849083 GTATACATAA
Statistics
Matches: 66, Mismatches: 10, Indels: 18
0.70 0.11 0.19
Matches are distributed among these distances:
30 27 0.41
32 9 0.14
33 1 0.02
34 4 0.06
35 4 0.06
36 10 0.15
37 10 0.15
39 1 0.02
ACGTcount: A:0.40, C:0.02, G:0.16, T:0.43
Consensus pattern (30 bp):
TATATATAATATATATATTAGTGGGTGTTA
Found at i:107849070 original size:36 final size:36
Alignment explanation
Indices: 107849030--107849121 Score: 116
Period size: 36 Copynumber: 2.6 Consensus size: 36
107849020 GATTCGGTAA
* * *
107849030 TATATATATATATATATATATATATGAGTGGG-GTT
1 TATATATATATATATATATATACATAAGTGGGTGAT
*
107849065 GTATATATATATATATATGTATACATAAGTGGGTGAT
1 -TATATATATATATATATATATACATAAGTGGGTGAT
*
107849102 TATACATATATA-ATATATAT
1 TATATATATATATATATATAT
107849122 TAATGGATTT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
35 7 0.14
36 40 0.82
37 2 0.04
ACGTcount: A:0.40, C:0.02, G:0.14, T:0.43
Consensus pattern (36 bp):
TATATATATATATATATATATACATAAGTGGGTGAT
Found at i:107849074 original size:2 final size:2
Alignment explanation
Indices: 107849029--107849054 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
107849019 GGATTCGGTA
107849029 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
107849055 GAGTGGGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107849153 original size:5 final size:5
Alignment explanation
Indices: 107849138--107849176 Score: 62
Period size: 5 Copynumber: 7.8 Consensus size: 5
107849128 ATTTTGATGT
107849138 TATATA TATAA TATAA TATAA TATAA TATAA TAT-A TATA
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA TATA
107849177 CACGCATGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 4 0.12
5 24 0.75
6 4 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
TATAA
Found at i:107851030 original size:33 final size:34
Alignment explanation
Indices: 107850991--107851054 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
107850981 ATCTTAACCA
*
107850991 CATTGAAACTAATTCATC-ACTTA-CCATATTGGT
1 CATTGAAA-TAATGCATCAACTTAGCCATATTGGT
*
107851024 CATTGAAATCATGCATCAACTTAGCCATATT
1 CATTGAAATAATGCATCAACTTAGCCATATT
107851055 TGTAACACCC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 7 0.26
33 13 0.48
34 7 0.26
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.34
Consensus pattern (34 bp):
CATTGAAATAATGCATCAACTTAGCCATATTGGT
Found at i:107853308 original size:48 final size:48
Alignment explanation
Indices: 107853250--107853811 Score: 915
Period size: 48 Copynumber: 11.9 Consensus size: 48
107853240 ATATACACAC
* *
107853250 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
107853298 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
107853346 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
107853394 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
107853442 ATCTCATACAGATTTCACACTAGCCATTCTGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
107853490 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
107853538 ATCTCATATATATTTCACATTAAG-C---C-G---AATCACATATACAT
1 ATCTCATACATATTTCACATT-AGCCATTCGGCTTTACCACATATACAT
*
107853579 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACGACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
107853627 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCTCATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
107853675 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACTACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
107853723 ATCTCATACATATTTCACATTAGCCATTCGGTTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
107853771 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
107853812 CACATATATA
Statistics
Matches: 480, Mismatches: 25, Indels: 18
0.92 0.05 0.03
Matches are distributed among these distances:
40 2 0.00
41 33 0.07
44 2 0.00
45 2 0.00
48 439 0.91
49 2 0.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:107853790 original size:281 final size:281
Alignment explanation
Indices: 107853287--107853811 Score: 969
Period size: 281 Copynumber: 1.9 Consensus size: 281
107853277 TCGGCTTTAC
107853287 CACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 CACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
107853352 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
66 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
107853417 CCATTCGGCTTTACCACATATACATATCTCATACAGATTTCACACTAGCCATTCTGCTTTACCAC
131 CCATTCGGCTTTACCACATATACATATCTCATACAGATTTCACACTAGCCATTCGGCTTTACCAC
107853482 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT
196 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT
107853547 ATATTTCACATTAAGCCGAAT
261 ATATTTCACATTAAGCCGAAT
* *
107853568 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACGACATATACATATCTCA
1 CACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
107853633 TACATATTTCACATTAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACATTAG
66 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* * * *
107853698 CCATTCGGCTTTACTACATATACATATCTCATACATATTTCACATTAGCCATTCGGTTTTACCAC
131 CCATTCGGCTTTACCACATATACATATCTCATACAGATTTCACACTAGCCATTCGGCTTTACCAC
107853763 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
196 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
107853812 CACATATATA
Statistics
Matches: 235, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
281 235 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (281 bp):
CACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCATACAGATTTCACACTAGCCATTCGGCTTTACCAC
ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT
ATATTTCACATTAAGCCGAAT
Found at i:107856377 original size:2 final size:2
Alignment explanation
Indices: 107856370--107856405 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
107856360 TCATAATTCA
107856370 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107856406 GAAATAATAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107861030 original size:40 final size:40
Alignment explanation
Indices: 107860858--107861023 Score: 262
Period size: 40 Copynumber: 4.2 Consensus size: 40
107860848 AACCCAAGTA
* * **
107860858 CCTTCGAGATTTAGCC-GGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
*
107860897 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
107860937 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
* *
107860977 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
107861017 CCTTCGG
1 CCTTCGG
107861024 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 14 0.12
40 105 0.88
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
Found at i:107867247 original size:40 final size:40
Alignment explanation
Indices: 107867202--107867369 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
107867192 CGGAATATAA
107867202 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
107867242 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
107867282 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
107867322 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
107867362 CCGGATAT
1 CCGGATAT
107867370 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:107875215 original size:40 final size:40
Alignment explanation
Indices: 107875170--107875337 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
107875160 CGGAATATAA
107875170 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
107875210 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
107875250 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
107875290 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
107875330 CCGGATAT
1 CCGGATAT
107875338 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:107879148 original size:40 final size:40
Alignment explanation
Indices: 107879093--107879300 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
107879083 TGAATGATAC
* *
107879093 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
107879133 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
107879173 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
107879213 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
107879253 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
107879293 CC-GGCTAA
1 CCGGGCTAA
107879301 ATTCCGAAGA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 6 0.04
40 138 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:107883833 original size:40 final size:40
Alignment explanation
Indices: 107883725--107883934 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
107883715 CGGGATTTAA
* * * * *
107883725 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
107883765 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
107883805 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
107883845 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
107883885 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
107883925 CCGGATATAT
1 CCGGATATAT
107883935 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:107886706 original size:40 final size:40
Alignment explanation
Indices: 107886637--107886842 Score: 333
Period size: 40 Copynumber: 5.2 Consensus size: 40
107886627 AACCCAAGTA
* **
107886637 CCTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
107886676 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
107886716 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
107886756 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
107886796 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
107886836 CCTTCGG
1 CCTTCGG
107886843 ATCTTAGTCC
Statistics
Matches: 157, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 13 0.08
40 144 0.92
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:107903412 original size:12 final size:12
Alignment explanation
Indices: 107903392--107903424 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
107903382 GACTCTATGC
107903392 GGCCGTGTGGTA
1 GGCCGTGTGGTA
*
107903404 GGCCCTGTGGTA
1 GGCCGTGTGGTA
107903416 GGCCGTGTG
1 GGCCGTGTG
107903425 CAATGACACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.21, G:0.48, T:0.24
Consensus pattern (12 bp):
GGCCGTGTGGTA
Found at i:107903553 original size:17 final size:18
Alignment explanation
Indices: 107903531--107903571 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
107903521 CCAAATTGGA
107903531 TGTGTGGG-CCACACAGG
1 TGTGTGGGCCCACACAGG
107903548 TGTGTGGGCCCACACAGG
1 TGTGTGGGCCCACACAGG
*
107903566 CGTGTG
1 TGTGTG
107903572 ATATCTGGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.15, C:0.24, G:0.41, T:0.20
Consensus pattern (18 bp):
TGTGTGGGCCCACACAGG
Found at i:107911074 original size:46 final size:46
Alignment explanation
Indices: 107911018--107911193 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
107911008 TATTTGGGCA
107911018 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
107911064 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* * * *
107911109 CATCTGAGCTCGTTGAGTGGAGTCGGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * **
107911157 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
107911194 GTGGGTTACA
Statistics
Matches: 103, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 59 0.57
47 24 0.23
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:107911124 original size:93 final size:93
Alignment explanation
Indices: 107911014--107911184 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
107911004 CAGATATTTG
* *
107911014 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
107911079 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * * *
107911107 GGCATCTGAGCTCGTTGAGTGGAGTCGGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
107911172 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
107911185 TGCTTATGGG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:107913752 original size:73 final size:72
Alignment explanation
Indices: 107913628--107913779 Score: 286
Period size: 73 Copynumber: 2.1 Consensus size: 72
107913618 CAAATTTATT
*
107913628 TTATTTTATTTGGATTTTTAACATTTTTTTCTTTCTCTTCTCCCCTTCTCCAATTTCCCCAAAAT
1 TTATTTTATTTGGACTTTTAACATTTTTTTCTTTCTCTTCTCCCCTTCTCCAATTTCCCCAAAAT
107913693 TCTGCCA
66 TCTGCCA
107913700 TTATTTTATTTGGACTTTTAACATTTTTTTTCTTTCTCTTCTCCCCTTCTCCAATTTCCCCAAAA
1 TTATTTTATTTGGACTTTTAACA-TTTTTTTCTTTCTCTTCTCCCCTTCTCCAATTTCCCCAAAA
107913765 TTCTGCCA
65 TTCTGCCA
107913773 TTATTTT
1 TTATTTT
107913780 TGACATTTTG
Statistics
Matches: 78, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
72 22 0.28
73 56 0.72
ACGTcount: A:0.18, C:0.26, G:0.04, T:0.53
Consensus pattern (72 bp):
TTATTTTATTTGGACTTTTAACATTTTTTTCTTTCTCTTCTCCCCTTCTCCAATTTCCCCAAAAT
TCTGCCA
Found at i:107929386 original size:41 final size:41
Alignment explanation
Indices: 107929329--107929410 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
107929319 TAAAAATAAA
107929329 GGTGTATAATCTTATAGAAAGGGTGATGGTTATACATTATG
1 GGTGTATAATCTTATAGAAAGGGTGATGGTTATACATTATG
107929370 GGTGTATAATCTTATAGAAAGGGTGATGGTTATACATTATG
1 GGTGTATAATCTTATAGAAAGGGTGATGGTTATACATTATG
107929411 TCCCATAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.37
Consensus pattern (41 bp):
GGTGTATAATCTTATAGAAAGGGTGATGGTTATACATTATG
Found at i:107929394 original size:21 final size:21
Alignment explanation
Indices: 107929329--107929394 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
107929319 TAAAAATAAA
107929329 GGTGTATAATCTTATAGAAAG
1 GGTGTATAATCTTATAGAAAG
** * *
107929350 GGTG-AT--GGTTATACATTATG
1 GGTGTATAATCTTATAGA--AAG
107929370 GGTGTATAATCTTATAGAAAG
1 GGTGTATAATCTTATAGAAAG
107929391 GGTG
1 GGTG
107929395 ATGGTTATAC
Statistics
Matches: 32, Mismatches: 8, Indels: 10
0.64 0.16 0.20
Matches are distributed among these distances:
18 6 0.19
20 8 0.25
21 12 0.38
23 6 0.19
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.35
Consensus pattern (21 bp):
GGTGTATAATCTTATAGAAAG
Found at i:107931296 original size:86 final size:86
Alignment explanation
Indices: 107931151--107931317 Score: 298
Period size: 86 Copynumber: 1.9 Consensus size: 86
107931141 TTTTAACAAC
*
107931151 CCAATATGAGTCTAATCTTAAACTATTATATAGAATTGTTCAAACAGAAAAGCATTTAATTTAGA
1 CCAATATGAGTCTAATCTTAAACCATTATATAGAATTGTTCAAACAGAAAAGCATTTAATTTAGA
107931216 GCATCATAGCAATTGAATAGG
66 GCATCATAGCAATTGAATAGG
* * *
107931237 CCAATATGAGTCTAATTTTAAACCATTATATATAATTGTTCAAACAGTAAAGCATTTAATTTAGA
1 CCAATATGAGTCTAATCTTAAACCATTATATAGAATTGTTCAAACAGAAAAGCATTTAATTTAGA
107931302 GCATCATAGCAATTGA
66 GCATCATAGCAATTGA
107931318 GCATAATGTA
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 77 1.00
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (86 bp):
CCAATATGAGTCTAATCTTAAACCATTATATAGAATTGTTCAAACAGAAAAGCATTTAATTTAGA
GCATCATAGCAATTGAATAGG
Found at i:107932798 original size:14 final size:14
Alignment explanation
Indices: 107932781--107932814 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
107932771 AGCATTTGTA
107932781 CCAAATCAACCATT
1 CCAAATCAACCATT
*
107932795 CCAAATGAACCATT
1 CCAAATCAACCATT
*
107932809 CAAAAT
1 CCAAAT
107932815 GCATATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.47, C:0.29, G:0.03, T:0.21
Consensus pattern (14 bp):
CCAAATCAACCATT
Found at i:107941002 original size:39 final size:39
Alignment explanation
Indices: 107940948--107941025 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
107940938 TATATGTGTG
107940948 ATGATAACTATGTTTTAAATGAGAATTGGTAAGTTGGGC
1 ATGATAACTATGTTTTAAATGAGAATTGGTAAGTTGGGC
107940987 ATGATAACTATGTTTTAAATGAGAATTGGTAAGTTGGGC
1 ATGATAACTATGTTTTAAATGAGAATTGGTAAGTTGGGC
107941026 TTCACAAAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (39 bp):
ATGATAACTATGTTTTAAATGAGAATTGGTAAGTTGGGC
Found at i:107943635 original size:29 final size:27
Alignment explanation
Indices: 107943601--107943703 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
107943591 TACTCAATCA
*
107943601 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
107943630 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
107943659 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
107943688 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
107943704 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:107951376 original size:29 final size:27
Alignment explanation
Indices: 107951342--107951444 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
107951332 TACTCAATCA
*
107951342 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
107951371 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
107951400 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
107951429 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
107951445 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:107955326 original size:3 final size:3
Alignment explanation
Indices: 107955318--107955351 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
107955308 TTTCAACAAT
107955318 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAGA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA-A GAA
107955352 TTTTGAGAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:107956285 original size:30 final size:30
Alignment explanation
Indices: 107956220--107956289 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
107956210 AACAACTTAA
** * *
107956220 CAAAATTTTCTAAAACTTTTAGAGTCTAAT
1 CAAAATTTTCTAAAAAATTTAAAGACTAAT
*
107956250 TAAAATTTTC-AAAAAATTTAAAGACATAAT
1 CAAAATTTTCTAAAAAATTTAAAGAC-TAAT
107956280 CAAAATTTTC
1 CAAAATTTTC
107956290 CAAACTTAGG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 11 0.33
30 22 0.67
ACGTcount: A:0.47, C:0.11, G:0.04, T:0.37
Consensus pattern (30 bp):
CAAAATTTTCTAAAAAATTTAAAGACTAAT
Found at i:107960333 original size:49 final size:46
Alignment explanation
Indices: 107960260--107960576 Score: 212
Period size: 47 Copynumber: 6.7 Consensus size: 46
107960250 GATAAGTTGT
* * *
107960260 CGATGCCATGTCCTAAACATGGTCTTACACTGGCTATCATCATCGAGGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ATCATCATCGAGGC
* * * * *
107960309 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATACG-TGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ATCAT-CAT-CGAGGC
* * * * **
107960359 TGATGCATGTCCCAGACATGTCTTACACTAGCA-CAACTTTTA-GC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCATCATCATCGAGGC
* * * * *
107960403 CGATGTATGTCCTAAACACGTCTTACACTGGCTATCATCGTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-ATCATCATCGAGGC
* * * *
107960450 CGATGTATGTCCAAGACATGTCTTACACTGGCACTCATC-TCTAAGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCA-TCATCATCGAGGC
* * * *
107960496 CAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCA-TCATCATCGAGGC
* * *
107960544 TGATGCATGTCCCAAACATGTCTTAGACTGGCA
1 CGATGCATGTCCCAGACATGTCTTACACTGGCA
107960577 CATAAGTAAT
Statistics
Matches: 217, Mismatches: 41, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
44 28 0.13
45 2 0.01
46 30 0.14
47 61 0.28
48 36 0.17
49 50 0.23
50 8 0.04
51 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCATCATCATCGAGGC
Found at i:107960554 original size:141 final size:140
Alignment explanation
Indices: 107960260--107960575 Score: 343
Period size: 141 Copynumber: 2.2 Consensus size: 140
107960250 GATAAGTTGT
* ** *
107960260 CGATGCCATGTCCTAAACATGGTCTTACACTGGCTATCATCATCGAGGTTGATGCCATGTCCCAG
1 CGATG-CATGTCCTAAACA-CGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCAAG
* * **
107960325 ACATGGTCTTACACTAGCTCTCATATATACGTGCTGATGCATGTCCCAGACATGTCTTACACTAG
64 ACATGGTCTTACACTAGCACTCATATATAC-AGCCAATGCATGTCCCAGACATGTCTTACACTAG
*
107960390 CACAACTTTTAGC
128 CACAACTTGTAGC
* * *
107960403 CGATGTATGTCCTAAACACGTCTTACACTGGCTATCATCGTCGAGGCCGATG-TATGTCCAAGAC
1 CGATGCATGTCCTAAACACGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCAAGAC
* * * *
107960467 AT-GTCTTACACTGGCACTCATCTCTA-AGCCAATGCCATGTCCCAGACATGGTCTTACACTGGC
66 ATGGTCTTACACTAGCACTCATATATACAGCCAATG-CATGTCCCAGACAT-GTCTTACACTAGC
*
107960530 AC-ACATAATGTGGC
129 ACAAC-T--TGTAGC
* * * *
107960544 TGATGCATGTCCCAAACATGTCTTAGACTGGC
1 CGATGCATGTCCTAAACACGTCTTACACTGGC
107960576 ACATAAGTAA
Statistics
Matches: 146, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
137 5 0.03
138 16 0.11
139 35 0.24
140 12 0.08
141 61 0.42
142 12 0.08
143 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (140 bp):
CGATGCATGTCCTAAACACGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCAAGAC
ATGGTCTTACACTAGCACTCATATATACAGCCAATGCATGTCCCAGACATGTCTTACACTAGCAC
AACTTGTAGC
Found at i:107966682 original size:19 final size:19
Alignment explanation
Indices: 107966658--107966702 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
107966648 TAAGGCTCCA
107966658 CACGCCCGTATGCTTGGGC
1 CACGCCCGTATGCTTGGGC
*
107966677 CACGCCCGTGTGCTTGGGC
1 CACGCCCGTATGCTTGGGC
107966696 CACGCCC
1 CACGCCC
107966703 ATGTCCTGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.09, C:0.42, G:0.31, T:0.18
Consensus pattern (19 bp):
CACGCCCGTATGCTTGGGC
Found at i:107967977 original size:47 final size:46
Alignment explanation
Indices: 107967730--107968048 Score: 261
Period size: 47 Copynumber: 6.8 Consensus size: 46
107967720 TGAAAAGTTA
* * *
107967730 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCTTCATCGAGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ACTCATC-TCTACG
* * * * * *
107967779 CCGATGACATGTCCCATACATGGTCTTACACTAGCTCTCGTATATACG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCTCTACG
* * **
107967827 TTCTGATGCATGTCCCAGACATGTCTTACACTAGCACAAATCT-TAC-
1 --CCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACG
* * * * *
107967873 CCGATGTATGTCCCAGACACGTCTTACACTGGTTA-TCATCGTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGG-CACTCATC-TCTACG
* *
107967920 TCGATGCATGTCCCAGACATGTCTTACACTGGCACTTATCTCTACG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACG
* * * * *
107967966 CCGATGCCATGTCCCAAACATTATCTTACACTGGCACTCATAATGT-GG
1 CCGATG-CATGTCCCAGACA-TGTCTTACACTGGCACTCAT-CTCTACG
107968014 CCGATGCATGTCCCAGACATGTCTTACACTGGCAC
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCAC
107968049 ATAAGTAATC
Statistics
Matches: 218, Mismatches: 41, Indels: 25
0.77 0.14 0.09
Matches are distributed among these distances:
44 31 0.14
45 2 0.01
46 26 0.12
47 60 0.28
48 44 0.20
49 50 0.23
50 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACG
Found at i:107968018 original size:141 final size:140
Alignment explanation
Indices: 107967730--107968046 Score: 345
Period size: 141 Copynumber: 2.2 Consensus size: 140
107967720 TGAAAAGTTA
* *
107967730 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTCATCGAGGCCGATGACATGTCCCA
1 CCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCATCATCGAGGCCGATGACATGTCCCA
* * * * * *
107967795 TACATGGTCTTACACTAGCTCTCGTATATACGTTCTGATGCATGTCCCAGACATGTCTTACACTA
64 GACATGGTCTTACACTAGCACTCATATATACG-TCCGATGCATGTCCCAAACATATCTTACACTA
*
107967860 GCACAAATCTTAC
128 GCACAAATCGTAC
* * * *
107967873 CCGATGTATGTCCCAGACACGTCTTACACTGGTTATCATCGTCGAGGTCGATG-CATGTCCCAGA
1 CCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATGACATGTCCCAGA
* * * * *
107967937 CAT-GTCTTACACTGGCACTTATCTCTACG-CCGATGCCATGTCCCAAACATTATCTTACACTGG
66 CATGGTCTTACACTAGCACTCATATATACGTCCGATG-CATGTCCCAAACA-TATCTTACACTAG
**
107968000 CACTCATAAT-GTGG
129 CA--CA-AATCGTAC
*
107968014 CCGATGCATGTCCCAGACATGTCTTACACTGGC
1 CCGATGCATGTCCCAGACACGTCTTACACTGGC
107968047 ACATAAGTAA
Statistics
Matches: 146, Mismatches: 23, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
137 5 0.03
138 12 0.08
139 33 0.23
140 13 0.09
141 62 0.42
142 15 0.10
143 6 0.04
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (140 bp):
CCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATGACATGTCCCAGA
CATGGTCTTACACTAGCACTCATATATACGTCCGATGCATGTCCCAAACATATCTTACACTAGCA
CAAATCGTAC
Found at i:107968034 original size:94 final size:93
Alignment explanation
Indices: 107967730--107968048 Score: 292
Period size: 94 Copynumber: 3.4 Consensus size: 93
107967720 TGAAAAGTTA
* *
107967730 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCT-TCATCGAGGCCGATGACATGTCC
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ACT-TATC-TCTACGCCGATG-CATGTCC
* * * * * *
107967793 CATACATGGTCTTACACTAGCTCTCGTATATACGT-T
60 CAAACATCGTCTTACACTGGCACTC--ATA-ATGTGG
* * ** * *
107967829 CTGATGCATGTCCCAGACATGTCTTACACTAGCACAAATCT-TAC-CCGATGTATGTCCCAGACA
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCACTTATCTCTACGCCGATGCATGTCCCAAACA
* ** *
107967892 -CGTCTTACACTGGTTA-TCATCGTCGAGG
66 TCGTCTTACACTGG-CACTCATAAT-GTGG
*
107967920 TCGATGCATGTCCCAGACATGTCTTACACTGGCACTTATCTCTACGCCGATGCCATGTCCCAAAC
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCACTTATCTCTACGCCGATG-CATGTCCCAAAC
**
107967985 ATTATCTTACACTGGCACTCATAATGTGG
65 ATCGTCTTACACTGGCACTCATAATGTGG
107968014 CCGATGCATGTCCCAGACATGTCTTACACTGGCAC
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCAC
107968049 ATAAGTAATC
Statistics
Matches: 179, Mismatches: 31, Indels: 25
0.76 0.13 0.11
Matches are distributed among these distances:
90 3 0.02
91 36 0.20
92 16 0.09
93 17 0.09
94 55 0.31
95 17 0.09
96 2 0.01
97 14 0.08
98 14 0.08
99 5 0.03
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (93 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCACTTATCTCTACGCCGATGCATGTCCCAAACA
TCGTCTTACACTGGCACTCATAATGTGG
Found at i:107972404 original size:16 final size:16
Alignment explanation
Indices: 107972383--107972433 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
107972373 TTACTGATTG
107972383 CAGCTCTATTCTATTA
1 CAGCTCTATTCTATTA
107972399 CAGCTCTATT-TAATTA
1 CAGCTCTATTCT-ATTA
* *
107972415 CAGCCCTATTCCATTA
1 CAGCTCTATTCTATTA
107972431 CAG
1 CAG
107972434 TGAATAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 1 0.03
16 30 0.97
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.37
Consensus pattern (16 bp):
CAGCTCTATTCTATTA
Found at i:107973068 original size:98 final size:101
Alignment explanation
Indices: 107972959--107973200 Score: 305
Period size: 98 Copynumber: 2.4 Consensus size: 101
107972949 ATGATTTTTT
* * *
107972959 TCATATCTGGTGCCGGCCATTGACAGGCCAGCACCAAAAAATTTTGATTTTTTTCGTACTGGT-T
1 TCATACCTGGTGCCGGCCA-TGACAGGCCAGCACCAAAAAATGTT-ATTTTTTTCGTACTGGTGC
*
107973023 CGGCCATTAGAAGG-C-C-AAAAAAA-AAATTAAATAC
64 CGACCATTAGAAGGCCACAAAAAAAATAAATTAAATAC
* *
107973057 TCATACCTGGTGCCGGCCATGACAGACCAGCACCAAAAAAATGTTATTTTTTTCGTATTGGTGCC
1 TCATACCTGGTGCCGGCCATGACAGGCCAGCACC-AAAAAATGTTATTTTTTTCGTACTGGTGCC
107973122 GACCATTAGAAGGCCAAAACAAAAAAAATAAATTAAATAC
65 GACCATTAGAAGGCC---ACAAAAAAAATAAATTAAATAC
* * *
107973162 TCGTACCTGATGCCGGCCAGTGACAGGCTAGCACCAAAA
1 TCATACCTGGTGCCGGCCA-TGACAGGCCAGCACCAAAA
107973201 TTTTTTTTAA
Statistics
Matches: 124, Mismatches: 10, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
97 30 0.24
98 40 0.32
99 1 0.01
103 1 0.01
104 7 0.06
105 32 0.26
106 13 0.10
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (101 bp):
TCATACCTGGTGCCGGCCATGACAGGCCAGCACCAAAAAATGTTATTTTTTTCGTACTGGTGCCG
ACCATTAGAAGGCCACAAAAAAAATAAATTAAATAC
Found at i:107973993 original size:22 final size:21
Alignment explanation
Indices: 107973962--107974002 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
107973952 TCATTCAATA
*
107973962 AATTAATAAATTTAATTTTTT
1 AATTAATAAATATAATTTTTT
107973983 AATTAAATAAATATAATTTT
1 AATT-AATAAATATAATTTT
107974003 ATTTTAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
AATTAATAAATATAATTTTTT
Found at i:107984315 original size:48 final size:48
Alignment explanation
Indices: 107984240--107984598 Score: 404
Period size: 48 Copynumber: 7.6 Consensus size: 48
107984230 GTGAGATGTT
*
107984240 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCCCATATCAATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAATGCC
* * * * *
107984288 GATACCATGTTCCAAACATGGTCTTACACTCGCTCACATGTCGAGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAATGCC
* * *
107984336 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATACC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAATGCC
* * * * *
107984384 AATGCCATGTTCCAAACATGGTCTT-CACTAGTTCACATGTCGAGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAATGCC
* * * *
107984431 GATACCATGTCCCAAACAT-G---TACACTAGCTCTCATATTAATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAATGCC
* ** * * * *
107984475 GATGCCATGTTCTAAACATAATTTTACACTGGCTCACATGTCGATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAATGCC
* * * * *
107984523 AATGCCATGTCCCAAACATGGTCTTACGCAAGCTCTCATATCAATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAATGCC
*
107984571 GATACCATGTTCCAAACATGGTCTTACA
1 GATGCCATGTTCCAAACATGGTCTTACA
107984599 TTGTTGCGTT
Statistics
Matches: 250, Mismatches: 56, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
43 1 0.00
44 32 0.13
46 1 0.00
47 32 0.13
48 184 0.74
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAATGCC
Found at i:107984404 original size:96 final size:96
Alignment explanation
Indices: 107984240--107984598 Score: 512
Period size: 96 Copynumber: 3.8 Consensus size: 96
107984230 GTGAGATGTT
* *
107984240 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCCCATATCAATGCCGATACCATGTTCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATACCATGTTCCAAAC
*
107984305 ATGGTCTTACACTCGCTCACATGTCGAGGCC
66 ATGGTCTTACACTAGCTCACATGTCGAGGCC
* * *
107984336 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATACCAATGCCATGTTCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATACCATGTTCCAAAC
*
107984401 ATGGTCTT-CACTAGTTCACATGTCGAGGCC
66 ATGGTCTTACACTAGCTCACATGTCGAGGCC
* * * *
107984431 GATACCATGTCCCAAACAT-G---TACACTAGCTCTCATATTAATGCCGATGCCATGTTCTAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATACCATGTTCCAAAC
** * * *
107984492 ATAATTTTACACTGGCTCACATGTCGATGCC
66 ATGGTCTTACACTAGCTCACATGTCGAGGCC
* * *
107984523 AATGCCATGTCCCAAACATGGTCTTACGCAAGCTCTCATATCAATGCCGATACCATGTTCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATACCATGTTCCAAAC
107984588 ATGGTCTTACA
66 ATGGTCTTACA
107984599 TTGTTGCGTT
Statistics
Matches: 230, Mismatches: 28, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
91 42 0.18
92 36 0.16
93 1 0.00
94 1 0.00
95 38 0.17
96 112 0.49
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (96 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGCCGATACCATGTTCCAAAC
ATGGTCTTACACTAGCTCACATGTCGAGGCC
Found at i:107988089 original size:6 final size:6
Alignment explanation
Indices: 107988078--107988108 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
107988068 ATTAGTTTCA
*
107988078 TTTTAT TTTTAT TTTTAT GTTTAT TTTTAT T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT T
107988109 CTCTTAGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:107997457 original size:46 final size:48
Alignment explanation
Indices: 107997405--107997714 Score: 215
Period size: 47 Copynumber: 6.6 Consensus size: 48
107997395 TTTGTGTACT
107997405 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATATTGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTGTGAGAGCC
* * *
107997451 AATGTAAGACCATGTCTGGGACATGGTATCGG---TATTGAAATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTG---TGAGAGCC
* * * *
107997499 AGTGTAAGA-CATGTCTGAGACAT-GCATCAGCC-TCGAGATGT-A-AGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT--A-TTGTGAGAGCC
* * * *** * *
107997545 AATGTAAGA-CATGTCTGGGACAT-ACATCGGCTATAAAAT--GTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTGTGAGAGCC
*
107997589 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGA-ATATGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-C-ATAT-TGTGAGAGCC
* *
107997639 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGA-TG-GATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-ATTGTGA-GAGCC
* *
107997686 AGTGTAAGACCATGTGTGGGATATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
107997715 AGGCATTATA
Statistics
Matches: 212, Mismatches: 30, Indels: 43
0.74 0.11 0.15
Matches are distributed among these distances:
44 11 0.05
45 20 0.09
46 53 0.25
47 63 0.30
48 26 0.12
49 2 0.01
50 35 0.17
51 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTGTGAGAGCC
Found at i:107997635 original size:140 final size:141
Alignment explanation
Indices: 107997407--107997668 Score: 336
Period size: 140 Copynumber: 1.9 Consensus size: 141
107997397 TGTGTACTAG
* ***
107997407 TGTAAGACATGTCTGGGACATGCATCGGCCATATTGTGAGAGCCAATGTAAGACCATGTCTGGGA
1 TGTAAGACATGTCTGGGACATACATCGGCCATAAAAT-AGAGCCAATGTAAGACCATGTCTGGGA
* * *
107997472 CATGGTATCGGTATTGAAATGAGAG-CTAGTGTAAGA-CATGTCTGAGACAT-GCATCAGCCTCG
65 CATGGCATCGGCATCGAAATGAGAGTC-AGTGTAAGACCATGTCTGAGACATGGCATCAGCCTCG
107997534 AGATGTAAGCTAA
129 AGATGTAAGCTAA
* * * *
107997547 TGTAAGACATGTCTGGGACATACATCGGCTATAAAAT-GTGTCAGTGTAAGACCATGTCTGGGAC
1 TGTAAGACATGTCTGGGACATACATCGGCCATAAAATAGAGCCAATGTAAGACCATGTCTGGGAC
*
107997611 ATGGCATCGGCA-CGAATATGTGAGAGTCAGTGTAAGACCATGTCTGGGACATGGCATC
66 ATGGCATCGGCATCGAA-A--TGAGAGTCAGTGTAAGACCATGTCTGAGACATGGCATC
107997669 GACTTGATGG
Statistics
Matches: 104, Mismatches: 12, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
137 3 0.03
138 35 0.34
140 47 0.45
141 14 0.13
142 5 0.05
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (141 bp):
TGTAAGACATGTCTGGGACATACATCGGCCATAAAATAGAGCCAATGTAAGACCATGTCTGGGAC
ATGGCATCGGCATCGAAATGAGAGTCAGTGTAAGACCATGTCTGAGACATGGCATCAGCCTCGAG
ATGTAAGCTAA
Found at i:107997645 original size:94 final size:93
Alignment explanation
Indices: 107997403--107997669 Score: 289
Period size: 94 Copynumber: 2.8 Consensus size: 93
107997393 CATTTGTGTA
107997403 CTAGTGTAAGACATGTCTGGGACATGCATCGGCC-ATATTGTGAGAGCCAATGTAAGACCATGTC
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCGATA-TGTGAGAG-CAATGTAAGACCATGTC
** *
107997467 TGGGACATGGTATCGGTATTGAAATGAGAG
64 TGGGACATGACATCGGTATTAAAATGAGAG
* * *
107997497 CTAGTGTAAGACATGTCTGAGACATGCATCAGCCTCGAGATGT-A-AGCTAATGTAAGA-CATGT
1 CTAGTGTAAGACATGTCTGGGACATGCATC-GGC-CGATATGTGAGAGC-AATGTAAGACCATGT
* *
107997559 CTGGGACAT-ACATCGGCTA-TAAAATGTG-T
63 CTGGGACATGACATCGG-TATTAAAATGAGAG
*
107997588 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAATATGTGAGAGTCAGTGTAAGACCAT
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CG-ATATGTGAGAG-CAATGTAAGACCAT
*
107997652 GTCTGGGACATGGCATCG
61 GTCTGGGACATGACATCG
107997670 ACTTGATGGA
Statistics
Matches: 146, Mismatches: 14, Indels: 24
0.79 0.08 0.13
Matches are distributed among these distances:
90 9 0.06
91 18 0.12
92 22 0.15
93 18 0.12
94 50 0.34
95 18 0.12
96 9 0.06
97 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (93 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCCGATATGTGAGAGCAATGTAAGACCATGTCTG
GGACATGACATCGGTATTAAAATGAGAG
Found at i:107997712 original size:47 final size:49
Alignment explanation
Indices: 107997405--107997719 Score: 222
Period size: 46 Copynumber: 6.7 Consensus size: 49
107997395 TTTGTGTACT
107997405 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-C-ATATTGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAATA-TGTGAGAGCC
* * * * *
107997451 AATGTAAGACCATGTCTGGGACATGGTATCGGTATTGAA-A--TGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA--CAATATGTGAGAGCC
* * * * * *
107997499 AGTGTAAGA-CATGTCTGAGACAT-GCATCAGCCTCGAGATGT-A-AGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCACAATATGTGAGAGCC
* * * * *
107997545 AATGTAAGA-CATGTCTGGGACAT-ACATCGGCTATAAAATGT----GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACAATATGTGAGAGCC
*
107997589 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAATATGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-AATATGTGAGAGCC
*
107997639 AGTGTAAGACCATGTCTGGGACATGGCATC-G-AC-TTGATG-GATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAAT-ATGTGA-GAGCC
* * *
107997686 AGTGTAAGACCATGTGTGGGATATGGCATAGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
107997720 TTATAACCTG
Statistics
Matches: 215, Mismatches: 32, Indels: 41
0.75 0.11 0.14
Matches are distributed among these distances:
44 9 0.04
45 18 0.08
46 63 0.29
47 63 0.29
48 25 0.12
49 2 0.01
50 33 0.15
51 1 0.00
52 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAATATGTGAGAGCC
Found at i:108005090 original size:15 final size:15
Alignment explanation
Indices: 108005070--108005120 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
108005060 AAAACCCATT
108005070 AACATAAGTGATTAA
1 AACATAAGTGATTAA
*
108005085 AACATAA-T-ATTTTA
1 AACATAAGTGA-TTAA
*
108005099 AACATAAGTGACTAA
1 AACATAAGTGATTAA
*
108005114 AATATAA
1 AACATAA
108005121 CTTAAGGAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
13 1 0.03
14 11 0.38
15 16 0.55
16 1 0.03
ACGTcount: A:0.55, C:0.08, G:0.08, T:0.29
Consensus pattern (15 bp):
AACATAAGTGATTAA
Found at i:108017297 original size:18 final size:18
Alignment explanation
Indices: 108017268--108017325 Score: 50
Period size: 17 Copynumber: 3.3 Consensus size: 18
108017258 TTAAACCTTT
108017268 AAAAT-TTT-AAATTTTA
1 AAAATATTTAAAATTTTA
*
108017284 AAAATATTTAAAA-TATA
1 AAAATATTTAAAATTTTA
* *
108017301 TAAATATGTAAAAATTTATA
1 AAAATAT-TTAAAATTT-TA
108017321 AAAAT
1 AAAAT
108017326 TAGTAGACAA
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
16 5 0.16
17 12 0.38
18 8 0.25
19 1 0.03
20 6 0.19
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (18 bp):
AAAATATTTAAAATTTTA
Found at i:108018684 original size:2 final size:2
Alignment explanation
Indices: 108018677--108018732 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
108018667 TTATGGATAA
108018677 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
108018719 AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG
108018733 CCATATTTTC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:108019786 original size:18 final size:16
Alignment explanation
Indices: 108019763--108019806 Score: 61
Period size: 18 Copynumber: 2.6 Consensus size: 16
108019753 TATGTGTTAT
108019763 AAAATTACATAATAAATA
1 AAAATTACATAAT--ATA
108019781 AAAATTACATAATATA
1 AAAATTACATAATATA
108019797 AAACATTACA
1 AAA-ATTACA
108019807 AACTAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.24
17 6 0.24
18 13 0.52
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAATTACATAATATA
Found at i:108019816 original size:17 final size:17
Alignment explanation
Indices: 108019766--108019818 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
108019756 GTGTTATAAA
*
108019766 ATTACATAATAAATAAAA
1 ATTACATAATAAA-AAAC
*
108019784 ATTACATAATATAAAAC
1 ATTACATAATAAAAAAC
108019801 ATTACA-AACTAAAAAAC
1 ATTACATAA-TAAAAAAC
108019818 A
1 A
108019819 AGCCTATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
16 2 0.06
17 17 0.55
18 12 0.39
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.25
Consensus pattern (17 bp):
ATTACATAATAAAAAAC
Found at i:108020134 original size:27 final size:24
Alignment explanation
Indices: 108020080--108020127 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
108020070 ACTATATGAC
**
108020080 ATTTATTATTAAATTGTAATATAT
1 ATTTATTATTAAATAATAATATAT
108020104 ATTTATTATTAAAATAATAATATA
1 ATTTATTATT-AAATAATAATATA
108020128 AATATTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
ATTTATTATTAAATAATAATATAT
Found at i:108020188 original size:15 final size:16
Alignment explanation
Indices: 108020168--108020197 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
108020158 TATTTAAGAT
108020168 TTAAAA-TTATTATTG
1 TTAAAATTTATTATTG
108020183 TTAAAATTTATTATT
1 TTAAAATTTATTATT
108020198 AAAATCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (16 bp):
TTAAAATTTATTATTG
Found at i:108021242 original size:33 final size:33
Alignment explanation
Indices: 108021200--108021263 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
108021190 TGGGGCCACA
*
108021200 TGCCCGTGTGCGCCCACATGG-CCAAAATGGCTT
1 TGCCCGTGTG-GCCCACACGGCCCAAAATGGCTT
*
108021233 TGCCCGTGTGGCCTACACGGCCCAAAATGGC
1 TGCCCGTGTGGCCCACACGGCCCAAAATGGC
108021264 CTAAGCCATG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 8 0.29
33 20 0.71
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.19
Consensus pattern (33 bp):
TGCCCGTGTGGCCCACACGGCCCAAAATGGCTT
Found at i:108022324 original size:12 final size:13
Alignment explanation
Indices: 108022307--108022336 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
108022297 ATCTTAAAAA
108022307 TATTTAATTTA-G
1 TATTTAATTTATG
108022319 TATTTAATTTATG
1 TATTTAATTTATG
108022332 TATTT
1 TATTT
108022337 TTTATACTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
TATTTAATTTATG
Found at i:108024235 original size:93 final size:93
Alignment explanation
Indices: 108024132--108024313 Score: 319
Period size: 93 Copynumber: 2.0 Consensus size: 93
108024122 GACTAACTCA
*
108024132 AAATTTTTTTACTCGATTTGACTCAACTCGATCGAATACTCACCCTTAATCTCATCATTGTGGAA
1 AAATTATTTTACTCGATTTGACTCAACTCGATCGAATACTCACCCTTAATCTCATCATTGTGGAA
*
108024197 AAGATAGGAATTGTAAAGGTTATACTTG
66 AAGATAAGAATTGTAAAGGTTATACTTG
* *
108024225 AAATTATTTTACTCGATTTGACTCGACTCGATCGAATACTCACCTTTAATCTCATCATTGTGGAA
1 AAATTATTTTACTCGATTTGACTCAACTCGATCGAATACTCACCCTTAATCTCATCATTGTGGAA
*
108024290 AGGATAAGAATTGTAAAGGTTATA
66 AAGATAAGAATTGTAAAGGTTATA
108024314 GGGATTGTAA
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 84 1.00
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.35
Consensus pattern (93 bp):
AAATTATTTTACTCGATTTGACTCAACTCGATCGAATACTCACCCTTAATCTCATCATTGTGGAA
AAGATAAGAATTGTAAAGGTTATACTTG
Found at i:108025752 original size:4 final size:4
Alignment explanation
Indices: 108025739--108025768 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
108025729 TCAATATCAA
108025739 AAAG -AAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
108025769 AACACAGACA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:108031986 original size:13 final size:14
Alignment explanation
Indices: 108031968--108031996 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
108031958 GATGCTTATG
108031968 TTTAATTCA-TGAT
1 TTTAATTCATTGAT
108031981 TTTAATTCATTGAT
1 TTTAATTCATTGAT
108031995 TT
1 TT
108031997 CGTTGTTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.59
Consensus pattern (14 bp):
TTTAATTCATTGAT
Found at i:108034148 original size:21 final size:21
Alignment explanation
Indices: 108034124--108034164 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
108034114 AATGTATTTT
108034124 AGTAATATCTCAATTGAGTTG
1 AGTAATATCTCAATTGAGTTG
108034145 AGTAATATCTCAATTGAGTT
1 AGTAATATCTCAATTGAGTT
108034165 AATACTTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (21 bp):
AGTAATATCTCAATTGAGTTG
Found at i:108034926 original size:38 final size:38
Alignment explanation
Indices: 108034879--108034956 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
108034869 TAATTCTATG
*
108034879 TTAGGTTCATAAAAAAATTATAAATAACAAATTCATTT
1 TTAGCTTCATAAAAAAATTATAAATAACAAATTCATTT
*
108034917 TTAGCTTCATAAAAAAATTATAAATAACGAATTCATTT
1 TTAGCTTCATAAAAAAATTATAAATAACAAATTCATTT
108034955 TT
1 TT
108034957 GCGTTCTCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.38
Consensus pattern (38 bp):
TTAGCTTCATAAAAAAATTATAAATAACAAATTCATTT
Found at i:108039671 original size:38 final size:36
Alignment explanation
Indices: 108039629--108039709 Score: 101
Period size: 41 Copynumber: 2.1 Consensus size: 36
108039619 TTAAAAAGTA
108039629 TTTATATTAAAAAACACTACCACAAATATAATAAATATTT
1 TTTATATTAAAAAACAC-A--ACAAATATAATAAATA-TT
*
108039669 TATTATATTAAAAAACACAATAAATATAATAAAT-TT
1 T-TTATATTAAAAAACACAACAAATATAATAAATATT
108039705 TTTAT
1 TTTAT
108039710 TGTATTAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
35 4 0.10
36 3 0.08
38 14 0.36
40 2 0.05
41 16 0.41
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (36 bp):
TTTATATTAAAAAACACAACAAATATAATAAATATT
Found at i:108039710 original size:38 final size:40
Alignment explanation
Indices: 108039630--108039718 Score: 128
Period size: 38 Copynumber: 2.2 Consensus size: 40
108039620 TAAAAAGTAT
108039630 TTATATTAAAAAACACTACCACAAATATAATAAATATTTTA
1 TTATATTAAAAAACACTA-CACAAATATAATAAATATTTTA
* *
108039671 TTATATTAAAAAACAC-A-ATAAATATAATAAATTTTTTA
1 TTATATTAAAAAACACTACACAAATATAATAAATATTTTA
*
108039709 TTGTATTAAA
1 TTATATTAAA
108039719 TATAATTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
38 28 0.62
40 1 0.02
41 16 0.36
ACGTcount: A:0.53, C:0.08, G:0.01, T:0.38
Consensus pattern (40 bp):
TTATATTAAAAAACACTACACAAATATAATAAATATTTTA
Found at i:108039837 original size:20 final size:21
Alignment explanation
Indices: 108039801--108039840 Score: 64
Period size: 20 Copynumber: 1.9 Consensus size: 21
108039791 TAGGTTAGTG
108039801 ATTTAATATAAATATAATTATT
1 ATTTAATAT-AATATAATTATT
108039823 ATTTAATAT-ATATAATTA
1 ATTTAATATAATATAATTA
108039841 ATATAATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTTAATATAATATAATTATT
Found at i:108039863 original size:26 final size:29
Alignment explanation
Indices: 108039811--108039864 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
108039801 ATTTAATATA
*
108039811 AATATAATTATTATTTAATATATATAATT
1 AATATAATTATTATTTAATATACATAATT
108039840 AATATAATTATT-TTT-ATA-ACATAAT
1 AATATAATTATTATTTAATATACATAAT
108039865 ACATTCGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 6 0.25
27 3 0.12
28 3 0.12
29 12 0.50
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (29 bp):
AATATAATTATTATTTAATATACATAATT
Found at i:108042093 original size:44 final size:44
Alignment explanation
Indices: 108042043--108042132 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
108042033 TAGAAAGAAA
108042043 AGCAACACATTCATTCATTATGACCTTAAACAACAACAATTCAC
1 AGCAACACATTCATTCATTATGACCTTAAACAACAACAATTCAC
108042087 AGCAACACATTCATTCATTATGACCTTAAACAACAACAATTCAC
1 AGCAACACATTCATTCATTATGACCTTAAACAACAACAATTCAC
108042131 AG
1 AG
108042133 TATTGGAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.43, C:0.27, G:0.06, T:0.24
Consensus pattern (44 bp):
AGCAACACATTCATTCATTATGACCTTAAACAACAACAATTCAC
Found at i:108043846 original size:14 final size:14
Alignment explanation
Indices: 108043811--108043848 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
108043801 ATTTGCTAGT
*
108043811 AAAAT-ATTTTTTG
1 AAAATAATTTTTAG
108043824 AAAAGTAATTTTTAG
1 AAAA-TAATTTTTAG
108043839 AAAATAATTT
1 AAAATAATTT
108043849 ATTTTTCTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 4 0.18
14 7 0.32
15 11 0.50
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (14 bp):
AAAATAATTTTTAG
Found at i:108043854 original size:18 final size:19
Alignment explanation
Indices: 108043831--108043873 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
108043821 TTGAAAAGTA
108043831 ATTTTT-AGAAAATAATTT
1 ATTTTTCAGAAAATAATTT
* *
108043849 ATTTTTCTGAAAATGATTT
1 ATTTTTCAGAAAATAATTT
108043868 ATTTTT
1 ATTTTT
108043874 TTAGTGTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (19 bp):
ATTTTTCAGAAAATAATTT
Found at i:108046703 original size:26 final size:27
Alignment explanation
Indices: 108046674--108046741 Score: 74
Period size: 26 Copynumber: 2.6 Consensus size: 27
108046664 TTAAATCCCA
108046674 AAACCAGA-AAA-AAATTAAAAATAAAG
1 AAACCAGAGAAAGAAA-TAAAAATAAAG
*
108046700 AAA-CAGAGAAAGACATAAAAATAAAG
1 AAACCAGAGAAAGAAATAAAAATAAAG
108046726 AAA-CAG-GCAAAGAAAT
1 AAACCAGAG-AAAGAAAT
108046742 CATGAACAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
25 5 0.14
26 30 0.81
27 2 0.05
ACGTcount: A:0.69, C:0.09, G:0.13, T:0.09
Consensus pattern (27 bp):
AAACCAGAGAAAGAAATAAAAATAAAG
Found at i:108048525 original size:33 final size:33
Alignment explanation
Indices: 108048479--108048545 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
108048469 GGGTGACCTA
* * *
108048479 TATGGGGCTATCACTTGGGAAGTCAGATCGCGT
1 TATGGAGCCATCACTTGGGAAGTCAGATCACGT
*
108048512 TATGGAGCCATCACTTGGGAAGTCGGATCACGT
1 TATGGAGCCATCACTTGGGAAGTCAGATCACGT
108048545 T
1 T
108048546 GCAACTCAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (33 bp):
TATGGAGCCATCACTTGGGAAGTCAGATCACGT
Found at i:108051584 original size:62 final size:59
Alignment explanation
Indices: 108051518--108051634 Score: 162
Period size: 62 Copynumber: 1.9 Consensus size: 59
108051508 AATGATTATC
* * * *
108051518 TTAATATTAAATTTAATTTAATGCTTATCTTGTAGATAAATATTCTATTATTTTAATAAGAT
1 TTAATATTAAATTTAATCTAATACTTATC-T-T-GATAAATATTATATTAATTTAATAAGAT
*
108051580 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATACTTATCTTGATAAATATTATATTAATTTAATA
108051635 CTAAAGTGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 22 0.44
60 1 0.02
61 1 0.02
62 26 0.52
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTAATACTTATCTTGATAAATATTATATTAATTTAATAAGAT
Found at i:108052468 original size:2 final size:2
Alignment explanation
Indices: 108052461--108052492 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
108052451 TATAATTGTG
108052461 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
108052493 GAGATGATCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:108059528 original size:40 final size:40
Alignment explanation
Indices: 108059400--108059530 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
108059390 TATGCTGGAA
* * * *
108059400 ATTATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
108059440 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
108059480 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
108059520 ATTATATCCGG
1 ATTATATCCGG
108059531 TTATATTCCG
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Done.