Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 346 of 433
Found at i:108807831 original size:79 final size:80
Alignment explanation
Indices: 108807700--108807879 Score: 278
Period size: 79 Copynumber: 2.3 Consensus size: 80
108807690 TATTCGGATG
* *
108807700 ATATCCGGGCTAAGTCCCGAAGGCCTTTGTGCTAGTGACTATATCCGGGCTAAG-TCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
108807764 TTTATGCTAG-TGACT
66 TTTATGCGAGTTG-CT
108807779 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
108807844 TTTGTGCGAGTTGCT
66 TTTATGCGAGTTGCT
*
108807859 ATATCC-GGCTAA-TTCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
108807880 TACTTGGGTT
Statistics
Matches: 94, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
78 8 0.09
79 59 0.63
80 25 0.27
81 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTTATGCGAGTTGCT
Found at i:108820740 original size:93 final size:93
Alignment explanation
Indices: 108820628--108820799 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
108820618 GCCCATAAGT
* *
108820628 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
108820693 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
108820721 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
108820786 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
108820800 CAAATATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:108820795 original size:46 final size:46
Alignment explanation
Indices: 108820620--108820795 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
108820610 TGTAACCCGC
* *
108820620 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
108820666 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
108820712 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
108820759 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
108820796 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:108823207 original size:30 final size:30
Alignment explanation
Indices: 108823163--108823251 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
108823153 CAAAGATAAC
108823163 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
108823192 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
108823222 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
108823252 TGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:108823211 original size:15 final size:15
Alignment explanation
Indices: 108823163--108823242 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
108823153 CAAAGATAAC
*
108823163 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
108823177 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
108823192 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
108823207 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
108823222 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
108823237 AAGAAA
1 AAGAAA
108823243 CCCAAGATAT
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:108823251 original size:15 final size:15
Alignment explanation
Indices: 108823174--108823251 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
108823164 AGAAAACCGA
108823174 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
108823189 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
108823203 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
108823218 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
108823234 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
108823249 ATA
1 ATA
108823252 TGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:108826281 original size:92 final size:93
Alignment explanation
Indices: 108826168--108826338 Score: 265
Period size: 92 Copynumber: 1.8 Consensus size: 93
108826158 GCCCATAAGT
*
108826168 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTC-GACTCAAATCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAAATCA
108826231 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
* * * *
108826260 GAACTCGGACTCAATTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCAA
*
108826325 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
108826339 CAAATATCCC
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
91 2 0.03
92 45 0.63
93 24 0.34
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:108826311 original size:46 final size:46
Alignment explanation
Indices: 108826160--108826334 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
108826150 TGTAACCCGC
* *
108826160 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACATTTGCAT
* * *
108826206 CCATAAGTGAACTC-GACTCAAATCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* * *
108826255 CTC-T---CGAACTCGGACTCAATTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
108826298 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
108826335 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 3 0.03
45 18 0.17
46 48 0.45
47 20 0.19
48 1 0.01
49 6 0.06
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:108830334 original size:47 final size:44
Alignment explanation
Indices: 108830228--108830535 Score: 228
Period size: 47 Copynumber: 6.7 Consensus size: 44
108830218 GATATATTGT
* *
108830228 CGATGCCATGTCCCAGACATGTCTTACACTAGCACAACTCT-TAGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGC-TATCTCTGTAGC
* * **
108830273 TGATGCGTGTCCCAGACACATCTTACACTAGCTATCTCTGTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTATCTCTGT--A-GC
* * *
108830320 CGATGCATGTCCCAGGCATGTCTTACACTGGCACTCATCTCTGT-GT
1 CGATGCATGTCCCAGACATGTCTTACACTAG--CT-ATCTCTGTAGC
* *
108830366 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTATCAT-AGTATGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTATC-TCTGTA--GC
* ** *
108830414 TGATGCATGTCCCAGACATGTCTTACACTAGCCCTCATCTGGATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTATC-TCTGTA-GC
* * * *
108830460 CGATGCCATGT-CCAGATATGGTCTTACACTGGCTATCATAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTATC-T-CTGTAGC
* *
108830507 CGATGCATTTCCTAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
108830536 GGAGCACAAA
Statistics
Matches: 209, Mismatches: 36, Indels: 35
0.75 0.13 0.12
Matches are distributed among these distances:
43 5 0.02
44 25 0.12
45 9 0.04
46 54 0.26
47 88 0.42
48 18 0.09
49 2 0.01
50 8 0.04
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTATCTCTGTAGC
Found at i:108830484 original size:141 final size:136
Alignment explanation
Indices: 108830225--108830544 Score: 344
Period size: 141 Copynumber: 2.3 Consensus size: 136
108830215 TGAGATATAT
* * *
108830225 TGTCGATGCCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCTGATGCGTGTCCCAGAC
1 TGTCGATGCCATGTCCTAGACATGTCTTACACTAGCACAACTCATAGCTGATGCATGTCCCAGAC
* *
108830290 ACATCTTACACTAGCTATCTCTGTCGAGGCCGATGCATGTCCCAGGCATGTCTTACACTGGC-AC
66 ACATCTTACACTAGCCATCTCTG-CGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTA-
**
108830354 TCATCTCTG
129 TCAT-AATG
* *
108830363 TGTCGATGCCATGTCCTAGACATGGTCTTACACTAGCTATCATAGT-ATGGCTGATGCATGTCCC
1 TGTCGATGCCATGTCCTAGACAT-GTCTTACACTAGC-A-CA-ACTCATAGCTGATGCATGTCCC
** * * *
108830427 AGACATGTCTTACACTAGCCCTCATCTG-GATGCCGATGCCATGT-CCAGATATGGTCTTACACT
62 AGACACATCTTACACTAGCCATC-TCTGCGAGGCCGATG-CATGTCCCAGACAT-GTCTTACACT
108830490 GGCTATCATAATG
124 GGCTATCATAATG
* *
108830503 TGGCCGATG-CATTTCCTAGACATGTCTTACACTGGAGCACAA
1 T-GTCGATGCCATGTCCTAGACATGTCTTACACT--AGCACAA
108830545 ATCGCCCAAA
Statistics
Matches: 155, Mismatches: 16, Indels: 22
0.80 0.08 0.11
Matches are distributed among these distances:
138 23 0.15
139 25 0.16
140 33 0.21
141 67 0.43
142 7 0.05
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (136 bp):
TGTCGATGCCATGTCCTAGACATGTCTTACACTAGCACAACTCATAGCTGATGCATGTCCCAGAC
ACATCTTACACTAGCCATCTCTGCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTATC
ATAATG
Found at i:108830524 original size:93 final size:94
Alignment explanation
Indices: 108830228--108830535 Score: 310
Period size: 93 Copynumber: 3.3 Consensus size: 94
108830218 GATATATTGT
* * * * *
108830228 CGATGCCATGTCCCAGACATGTCTTACACTAGCA--CAACTC-TTAGCTGATG-CGTGTCCCAGA
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCACTCATCTCGGT-GCCGATGCCATGTCCTAGA
** * *
108830289 CA-CATCTTACACTAGCTATC-T-CTGTCGAGGC
64 CATGGTCTTACACTAGCTATCATAATAT---GGC
* * * *
108830320 CGATGCATGTCCCAGGCATGTCTTACACTGGCACTCATCTCTGTGTCGATGCCATGTCCTAGACA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGGTGCCGATGCCATGTCCTAGACA
*
108830385 TGGTCTTACACTAGCTATCATAGTATGGC
66 TGGTCTTACACTAGCTATCATAATATGGC
* * *
108830414 TGATGCATGTCCCAGACATGTCTTACACTAGCCCTCATCT-GGATGCCGATGCCATGTCC-AGAT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGG-TGCCGATGCCATGTCCTAGAC
* *
108830477 ATGGTCTTACACTGGCTATCATAATGTGGC
65 ATGGTCTTACACTAGCTATCATAATATGGC
* *
108830507 CGATGCATTTCCTAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
108830536 GGAGCACAAA
Statistics
Matches: 183, Mismatches: 25, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
91 26 0.14
92 5 0.03
93 67 0.37
94 66 0.36
95 16 0.09
96 1 0.01
97 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (94 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGGTGCCGATGCCATGTCCTAGACA
TGGTCTTACACTAGCTATCATAATATGGC
Found at i:108830927 original size:30 final size:30
Alignment explanation
Indices: 108830879--108830936 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
108830869 AACTTTACAT
*
108830879 CTTTGGTAAAATGACCATTTTACCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
* *
108830909 CTTTGGCAAGATGGCCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
108830937 TGCTTACAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:108833327 original size:79 final size:79
Alignment explanation
Indices: 108833238--108833397 Score: 311
Period size: 79 Copynumber: 2.0 Consensus size: 79
108833228 AGAAAAGAAG
108833238 TTAACCATTTCTATTTCTCTATTCTATCAAACATTATTTGTACCTAGTCTTTAACATAGAACATG
1 TTAACCATTTCTATTTCTCTATTCTATCAAACATTATTTGTACCTAGTCTTTAACATAGAACATG
*
108833303 ACCTTTAGCGGTGC
66 ACCTTTAGCGGCGC
108833317 TTAACCATTTCTATTTCTCTATTCTATCAAACATTATTTGTACCTAGTCTTTAACATAGAACATG
1 TTAACCATTTCTATTTCTCTATTCTATCAAACATTATTTGTACCTAGTCTTTAACATAGAACATG
108833382 ACCTTTAGCGGCGC
66 ACCTTTAGCGGCGC
108833396 TT
1 TT
108833398 TCCCTATAAA
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.41
Consensus pattern (79 bp):
TTAACCATTTCTATTTCTCTATTCTATCAAACATTATTTGTACCTAGTCTTTAACATAGAACATG
ACCTTTAGCGGCGC
Found at i:108836031 original size:43 final size:44
Alignment explanation
Indices: 108835865--108836032 Score: 122
Period size: 43 Copynumber: 4.0 Consensus size: 44
108835855 CATAGGATTC
*
108835865 CGATATATGATTTCATGTAAGACCACGTC-TGAGACGTTGGCAT
1 CGATATTTGATTTCATGTAAGACCACGTCTTGAGACGTTGGCAT
* * * **
108835908 CG--ATTTGAGATT--TGTAAGACCACGTCTAG-GACATCAGCAT
1 CGATATTTGA-TTTCATGTAAGACCACGTCTTGAGACGTTGGCAT
* * * ** * *
108835948 C-ATATTTGCTTTCGTGTAAAACCTTGTC-TGGGATAG-TGGCAT
1 CGATATTTGATTTCATGTAAGACCACGTCTTGAGA-CGTTGGCAT
*
108835990 CGATATTTGATTACATGTAAGACCACGTCTTGA-ACGTTGGCAT
1 CGATATTTGATTTCATGTAAGACCACGTCTTGAGACGTTGGCAT
108836033 TGTACCAGCT
Statistics
Matches: 90, Mismatches: 24, Indels: 22
0.66 0.18 0.16
Matches are distributed among these distances:
40 25 0.28
41 12 0.13
42 21 0.23
43 30 0.33
44 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (44 bp):
CGATATTTGATTTCATGTAAGACCACGTCTTGAGACGTTGGCAT
Found at i:108843330 original size:47 final size:47
Alignment explanation
Indices: 108843279--108843372 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
108843269 TTGAATAAAA
108843279 GAGTTAAATTTGAATTTATATAGATCAAGAACCAAAGAAAACGAATT
1 GAGTTAAATTTGAATTTATATAGATCAAGAACCAAAGAAAACGAATT
108843326 GAGTTAAATTTGAATTTATATAGATCAAGAACCAAAGAAAACGAATT
1 GAGTTAAATTTGAATTTATATAGATCAAGAACCAAAGAAAACGAATT
108843373 AGATCAGGGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.49, C:0.09, G:0.15, T:0.28
Consensus pattern (47 bp):
GAGTTAAATTTGAATTTATATAGATCAAGAACCAAAGAAAACGAATT
Found at i:108843772 original size:43 final size:42
Alignment explanation
Indices: 108843675--108843784 Score: 107
Period size: 42 Copynumber: 2.6 Consensus size: 42
108843665 AATTTGAGAT
* * **
108843675 TTACATGTAAGGCCATGTCTGGGACATCGGCATCGTATTTGT
1 TTACATGTAAGACCCTGTCTGGGACATCGGCATCGTATTTAA
*** *
108843717 TTTTGTATAAGACCCTGTCTGGGACAGT-GGCATCGATATTTAA
1 TTACATGTAAGACCCTGTCTGGGACA-TCGGCATCG-TATTTAA
108843760 TTACATGTAAGACCAC-GTCTGGGAC
1 TTACATGTAAGACC-CTGTCTGGGAC
108843785 GTTAGCATTG
Statistics
Matches: 53, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
42 27 0.51
43 25 0.47
44 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGACCCTGTCTGGGACATCGGCATCGTATTTAA
Found at i:108845704 original size:32 final size:32
Alignment explanation
Indices: 108845668--108845737 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
108845658 TAAACCAAAG
*
108845668 TATTATAAATTACATTCACGTTATTACCTTAA
1 TATTATAAATTACATTCACATTATTACCTTAA
108845700 TATTATAAATTACATTCACATTATTACCTTAA
1 TATTATAAATTACATTCACATTATTACCTTAA
108845732 TATTAT
1 TATTAT
108845738 CGAGAGCTGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.39, C:0.14, G:0.01, T:0.46
Consensus pattern (32 bp):
TATTATAAATTACATTCACATTATTACCTTAA
Found at i:108846958 original size:20 final size:20
Alignment explanation
Indices: 108846933--108846995 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
108846923 GAGGTAAAGC
*
108846933 ACACGCCCGTGTGCTTATGG
1 ACACGCCCGTGTGCTTAGGG
108846953 ACACGCCCGTGTGCTTAGGG
1 ACACGCCCGTGTGCTTAGGG
* * *
108846973 ACACGCTCATGTACTTAGGG
1 ACACGCCCGTGTGCTTAGGG
108846993 ACA
1 ACA
108846996 TGCCTGTGTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.22
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTAGGG
Found at i:108848026 original size:28 final size:28
Alignment explanation
Indices: 108847994--108848051 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
108847984 TTAGGCAATA
108847994 ATTCCAACAAGCATGAAATAGTTTCCCT
1 ATTCCAACAAGCATGAAATAGTTTCCCT
108848022 ATTCCAACAAGCATGAAATAGTTTCCCT
1 ATTCCAACAAGCATGAAATAGTTTCCCT
108848050 AT
1 AT
108848052 CACATACACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.10, T:0.29
Consensus pattern (28 bp):
ATTCCAACAAGCATGAAATAGTTTCCCT
Found at i:108855021 original size:29 final size:27
Alignment explanation
Indices: 108854988--108855048 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
108854978 GTAGGGATTG
108854988 GGGAAGAAATATAGGGATTTGGGAAATT
1 GGGAAGAAAT-TAGGGATTTGGGAAATT
* * *
108855016 AGGGAAGAAATTGGGGATTTTGGAAGTT
1 -GGGAAGAAATTAGGGATTTGGGAAATT
108855044 GGGAA
1 GGGAA
108855049 ATTAGGGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 5 0.17
28 14 0.48
29 10 0.34
ACGTcount: A:0.36, C:0.00, G:0.39, T:0.25
Consensus pattern (27 bp):
GGGAAGAAATTAGGGATTTGGGAAATT
Found at i:108857749 original size:23 final size:24
Alignment explanation
Indices: 108857723--108857768 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
108857713 ATATCCCCAC
*
108857723 ATGGAATGTAG-GGTTGGACGGAG
1 ATGGAATGTAGAGGCTGGACGGAG
*
108857746 ATGGAGTGTAGAGGCTGGACGGA
1 ATGGAATGTAGAGGCTGGACGGA
108857769 TAGGACTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.26, C:0.07, G:0.48, T:0.20
Consensus pattern (24 bp):
ATGGAATGTAGAGGCTGGACGGAG
Found at i:108858529 original size:22 final size:22
Alignment explanation
Indices: 108858504--108858545 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
108858494 ATAAGCTTTT
* *
108858504 ACATTAATATCTATATATATAC
1 ACATCAATATATATATATATAC
*
108858526 ACATCAATATATATCTATAT
1 ACATCAATATATATATATAT
108858546 TAAATTTATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.40
Consensus pattern (22 bp):
ACATCAATATATATATATATAC
Found at i:108858579 original size:15 final size:15
Alignment explanation
Indices: 108858555--108858640 Score: 50
Period size: 15 Copynumber: 5.8 Consensus size: 15
108858545 TTAAATTTAT
*
108858555 TTTTAAGGTTTAGAG
1 TTTTAGGGTTTAGAG
108858570 TTTTAGGGTTTAG-G
1 TTTTAGGGTTTAGAG
* * * * *
108858584 AATTAAGGCTTAAGGG
1 -TTTTAGGGTTTAGAG
* * *
108858600 TTTAAGGATTTAGTG
1 TTTTAGGGTTTAGAG
* *
108858615 -TCTAGAGTTTAGAG
1 TTTTAGGGTTTAGAG
108858629 TTTTAGGGTTTA
1 TTTTAGGGTTTA
108858641 AGGTTTATGT
Statistics
Matches: 52, Mismatches: 16, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
14 10 0.19
15 41 0.79
16 1 0.02
ACGTcount: A:0.26, C:0.02, G:0.29, T:0.43
Consensus pattern (15 bp):
TTTTAGGGTTTAGAG
Found at i:108858583 original size:7 final size:7
Alignment explanation
Indices: 108858556--108858678 Score: 50
Period size: 7 Copynumber: 17.0 Consensus size: 7
108858546 TAAATTTATT
*
108858556 TTTAAGG
1 TTTAGGG
*
108858563 TTTAGAGT
1 TTTAG-GG
108858571 TTTAGGG
1 TTTAGGG
*
108858578 TTTAGGAA
1 TTTAGG-G
* *
108858586 TTAAGGC
1 TTTAGGG
*
108858593 TTAAGGG
1 TTTAGGG
*
108858600 TTTAAGGA
1 TTT-AGGG
*
108858608 TTTAGTG
1 TTTAGGG
* *
108858615 TCTAGAG
1 TTTAGGG
*
108858622 TTTAGAGT
1 TTTAG-GG
108858630 TTTAGGG
1 TTTAGGG
*
108858637 TTTAAGG
1 TTTAGGG
*
108858644 TTTA-TG
1 TTTAGGG
**
108858650 TGTTAGTT
1 T-TTAGGG
*
108858658 TTTAAGG
1 TTTAGGG
108858665 TTTAGGG
1 TTTAGGG
108858672 TTTAGGG
1 TTTAGGG
108858679 GTTGAAATTA
Statistics
Matches: 86, Mismatches: 24, Indels: 12
0.70 0.20 0.10
Matches are distributed among these distances:
6 2 0.02
7 60 0.70
8 24 0.28
ACGTcount: A:0.24, C:0.02, G:0.31, T:0.44
Consensus pattern (7 bp):
TTTAGGG
Found at i:108859251 original size:41 final size:41
Alignment explanation
Indices: 108859183--108859322 Score: 181
Period size: 41 Copynumber: 3.4 Consensus size: 41
108859173 AAAGAATGCC
* * * * *
108859183 ACTATTGCTCAGCTTTCAGTGGTGTTTGAACCAAAAACGCT
1 ACTATTGCTCAACTTTTAGAGGCGTTTGGACCAAAAACGCT
* *
108859224 ACTATTGCTCAACTTTTTGAGGCGTTTGGACCAAAAACGCC
1 ACTATTGCTCAACTTTTAGAGGCGTTTGGACCAAAAACGCT
* * * *
108859265 ACTATTGCTCAGCTTTTAGCGGCGTTTGGTCTAAAAACGCT
1 ACTATTGCTCAACTTTTAGAGGCGTTTGGACCAAAAACGCT
108859306 ACTATTGCTCAACTTTT
1 ACTATTGCTCAACTTTT
108859323 TGCAGCGTTT
Statistics
Matches: 85, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 85 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (41 bp):
ACTATTGCTCAACTTTTAGAGGCGTTTGGACCAAAAACGCT
Found at i:108859303 original size:82 final size:82
Alignment explanation
Indices: 108859180--108859332 Score: 236
Period size: 82 Copynumber: 1.9 Consensus size: 82
108859170 GATAAAGAAT
* *
108859180 GCCACTATTGCTCAGCTTTCAGTGGTGTTTGAACCAAAAACGCTACTATTGCTCAACTTTTTG-A
1 GCCACTATTGCTCAGCTTTCAGCGGCGTTTGAACCAAAAACGCTACTATTGCTCAACTTTTTGCA
108859244 GGCGTTTGGACCAAAAAC
66 -GCGTTTGGACCAAAAAC
* ** *
108859262 GCCACTATTGCTCAGCTTTTAGCGGCGTTTGGTCTAAAAACGCTACTATTGCTCAACTTTTTGCA
1 GCCACTATTGCTCAGCTTTCAGCGGCGTTTGAACCAAAAACGCTACTATTGCTCAACTTTTTGCA
108859327 GCGTTT
66 GCGTTT
108859333 TCCTGCTAAC
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
82 63 0.98
83 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (82 bp):
GCCACTATTGCTCAGCTTTCAGCGGCGTTTGAACCAAAAACGCTACTATTGCTCAACTTTTTGCA
GCGTTTGGACCAAAAAC
Found at i:108860376 original size:7 final size:7
Alignment explanation
Indices: 108860364--108860388 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
108860354 ATTTGAATTG
108860364 TAAAAAA
1 TAAAAAA
108860371 TAAAAAA
1 TAAAAAA
108860378 TAAAAAA
1 TAAAAAA
108860385 TAAA
1 TAAA
108860389 GGATTAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (7 bp):
TAAAAAA
Found at i:108871465 original size:42 final size:42
Alignment explanation
Indices: 108871390--108871507 Score: 159
Period size: 42 Copynumber: 2.8 Consensus size: 42
108871380 ATGTAATCCT
*
108871390 ATATCGATGCCAATAGCCCAGCA-ATGGTCTTACACAAAGTCTC
1 ATATCGATGCC-ATATCCCAG-ATATGGTCTTACACAAAGTCTC
* *
108871433 ATATCGATGTCATATCCCAGATATGGTCTTACACGAAGTCTC
1 ATATCGATGCCATATCCCAGATATGGTCTTACACAAAGTCTC
* *
108871475 ATATTGATGCCA-ATCCCAAATATGGTCTTACAC
1 ATATCGATGCCATATCCCAGATATGGTCTTACAC
108871508 GTAGTCTTAG
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
41 21 0.31
42 37 0.54
43 10 0.15
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (42 bp):
ATATCGATGCCATATCCCAGATATGGTCTTACACAAAGTCTC
Found at i:108880651 original size:32 final size:34
Alignment explanation
Indices: 108880598--108880663 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 34
108880588 AAAGCCGACC
*
108880598 TTTAAAAGAAAAAATGATGAAAC-CTTCAGTTTT
1 TTTAAAAGAAAAAACGATGAAACTCTTCAGTTTT
*
108880631 TTTAAAA-AAAAGACGATGAAACTCTTCAGTTTT
1 TTTAAAAGAAAAAACGATGAAACTCTTCAGTTTT
108880664 AACCTCTTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 13 0.43
33 17 0.57
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (34 bp):
TTTAAAAGAAAAAACGATGAAACTCTTCAGTTTT
Found at i:108882053 original size:30 final size:30
Alignment explanation
Indices: 108882017--108882076 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
108882007 TTCCCGAGCC
*
108882017 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
108882047 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
108882077 CTTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:108884362 original size:24 final size:23
Alignment explanation
Indices: 108884318--108884362 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
108884308 TACATCAGTG
108884318 AAAGATTTATTGATTAGAAGCGT
1 AAAGATTTATTGATTAGAAGCGT
*
108884341 AAAGAGTTTCTTGAATTA-AAGC
1 AAAGA-TTTATTG-ATTAGAAGC
108884363 AGGGGAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 5 0.26
24 10 0.53
25 4 0.21
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (23 bp):
AAAGATTTATTGATTAGAAGCGT
Found at i:108890024 original size:40 final size:40
Alignment explanation
Indices: 108889978--108890191 Score: 254
Period size: 40 Copynumber: 5.3 Consensus size: 40
108889968 CTCGCACAAG
* * *
108889978 GCCTTCGGGTCTTAGCCCGG-ATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCACAAAT
* * *
108890018 GCCTTCGGGTCTTAGCCTGG-ATATAG-CAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTC-ACTAGCACAAAT
* * * *
108890058 GCCTTCGGGACTTAGTCCGGAATTAGTAACTCGCACCAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAAT
* *
108890098 GCCTTCGGGACTTAGCCCGGAATTAGTAACTTGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAAT
*
108890138 GCCTTCGGGACTTAGCCCGGAATTAATCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAAT
*
108890178 GTCTTCGGGACTTA
1 GCCTTCGGGACTTA
108890192 ACCCCATTAG
Statistics
Matches: 155, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 152 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAAT
Found at i:108890078 original size:80 final size:80
Alignment explanation
Indices: 108889942--108890191 Score: 301
Period size: 80 Copynumber: 3.1 Consensus size: 80
108889932 ACCCAAGTAT
* * * * * *
108889942 CTTCGGGATTTAG-CTGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGG-ATATGG
1 CTTCGGGACTTAGCCTGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
*
108890004 TCACTAGCATAAATGC
65 TCACTAGCACAAATGC
* *
108890020 CTTCGGGTCTTAGCCTGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGTCCGGAATTAGT
1 CTTCGGGACTTAGCCTGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* * *
108890085 AACTCGCACCAATGC
66 CACTAGCACAAATGC
* * * *
108890100 CTTCGGGACTTAGCCCGGA-ATTAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGAATTAA
1 CTTCGGGACTTAGCCTGGATA-TAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
*
108890164 TCACTAGCACAAATGT
65 TCACTAGCACAAATGC
108890180 CTTCGGGACTTA
1 CTTCGGGACTTA
108890192 ACCCCATTAG
Statistics
Matches: 146, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 11 0.08
79 19 0.13
80 114 0.78
81 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCTGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
CACTAGCACAAATGC
Found at i:108890191 original size:120 final size:119
Alignment explanation
Indices: 108889967--108890191 Score: 294
Period size: 120 Copynumber: 1.9 Consensus size: 119
108889957 GGATATAACC
* * * * *
108889967 ACTCGCACAAGGCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGTCTTA
1 ACTCGCACAAGGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTA
* *
108890032 GCCTGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGTCCGGAATTAGTA
66 GCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGTCCGGAATTAGTA
* *
108890086 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGA-ATTAGTAACTTGCACAAATGCCTTCGGGACT
1 ACTCGCA-CAAGGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGACT
* *
108890150 TAGCCCGGA-ATTAATC-ACTAGCACAAATGTCTTCGGGACTTA
64 TAGCCCGGATA-T-AGCAACTAGCACAAATGCCTTCGGGACTTA
108890192 ACCCCATTAG
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
119 9 0.10
120 80 0.88
121 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (119 bp):
ACTCGCACAAGGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTA
GCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGTCCGGAATTAGTA
Found at i:108892597 original size:30 final size:30
Alignment explanation
Indices: 108892561--108892620 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
108892551 TTCCCGAGCC
*
108892561 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
108892591 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
108892621 CTTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:108895091 original size:80 final size:80
Alignment explanation
Indices: 108895007--108895158 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
108894997 TATGGTAACC
* * *
108895007 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CAATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCAACTAGCACAAATGCCTTCGGGTCTTAA
108895071 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * * *
108895087 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAAC
108895152 CCGGATA
66 CCGGATA
108895159 TAATTTCCAG
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.02
80 59 0.98
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:108895097 original size:40 final size:39
Alignment explanation
Indices: 108895048--108895158 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 39
108895038 ATCACAATTT
*
108895048 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAA-GCACTA
*
108895088 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAAG-CACTA
*
108895128 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
108895159 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.06
40 58 0.92
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAAGCACTA
Found at i:108895176 original size:40 final size:38
Alignment explanation
Indices: 108895051--108895199 Score: 129
Period size: 40 Copynumber: 3.8 Consensus size: 38
108895041 ACAATTTGCA
* *
108895051 CAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-G
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAATTAC-CAG
* *** *
108895089 CACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAG
1 CA--AATGCCTTCGGGTCTTAGCCCGGATATAATTACCAG
* *
108895129 CACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAG
1 CA-AA-TGCCTTCGGGTCTTAGCCCGGATATAATTACCAG
* *
108895169 CATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 CA-AA-TGCCTTCGGGTCTTAGCCCGGATAT
108895200 CATTCAATTT
Statistics
Matches: 89, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
38 2 0.02
39 2 0.02
40 85 0.96
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (38 bp):
CAAATGCCTTCGGGTCTTAGCCCGGATATAATTACCAG
Found at i:108895182 original size:80 final size:80
Alignment explanation
Indices: 108895048--108895197 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
108895038 ATCACAATTT
* *
108895048 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
108895113 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
108895128 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
108895191 CCCGGAT
64 CCCGGAT
108895198 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:108903154 original size:80 final size:80
Alignment explanation
Indices: 108903070--108903218 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
108903060 TATGGTAACC
* * * *
108903070 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
108903134 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
108903150 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
108903215 CCGG
66 CCGG
108903219 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:108903160 original size:40 final size:38
Alignment explanation
Indices: 108903111--108903218 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
108903101 ATCACGATTT
*
108903111 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
108903151 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
108903191 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
108903219 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:108905677 original size:28 final size:27
Alignment explanation
Indices: 108905609--108905678 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
108905599 CAAATTGTAT
* *
108905609 AGCACTAAGTGTGCGAGTTTGATTATA
1 AGCACTAAGTGTGCGAGTTCGACTATA
*
108905636 TGCACTAAGTGTGCGAGTTCGACTATTA
1 AGCACTAAGTGTGCGAGTTCGACTA-TA
108905664 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
108905679 GGCTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTCGACTATA
Found at i:108908661 original size:80 final size:80
Alignment explanation
Indices: 108908577--108908728 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
108908567 TATGGTAACC
* * * *
108908577 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
108908641 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
108908657 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
108908722 CCGGATA
66 CCGGATA
108908729 TAATTTCCAG
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.02
80 59 0.98
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:108908667 original size:40 final size:39
Alignment explanation
Indices: 108908618--108908728 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 39
108908608 ATCACGATTT
*
108908618 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAA-GCACTA
*
108908658 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAAG-CACTA
*
108908698 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
108908729 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.06
40 58 0.92
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAAGCACTA
Found at i:108908746 original size:40 final size:38
Alignment explanation
Indices: 108908621--108908767 Score: 120
Period size: 40 Copynumber: 3.8 Consensus size: 38
108908611 ACGATTTGCA
* *
108908621 CAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-G
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAATTAC-CAG
* *** *
108908659 CACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAG
1 CA--AATGCCTTCGGGTCTTAGCCCGGATATAATTACCAG
* *
108908699 CACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAG
1 CA-AA-TGCCTTCGGGTCTTAGCCCGGATATAATTACCAG
*
108908739 CATAATTGTCTTC-GG-CTTAGCCCGGATAT
1 CA-AA-TGCCTTCGGGTCTTAGCCCGGATAT
108908768 CATTCAATTT
Statistics
Matches: 88, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
38 15 0.17
39 4 0.05
40 69 0.78
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.27
Consensus pattern (38 bp):
CAAATGCCTTCGGGTCTTAGCCCGGATATAATTACCAG
Found at i:108916721 original size:80 final size:80
Alignment explanation
Indices: 108916637--108916788 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
108916627 TATGGTAACC
* * * *
108916637 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
108916701 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
108916717 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
108916782 CCGGATA
66 CCGGATA
108916789 TAATTTCCAG
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.02
80 59 0.98
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:108916727 original size:40 final size:39
Alignment explanation
Indices: 108916678--108916788 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 39
108916668 ATCACGATTT
*
108916678 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAA-GCACTA
*
108916718 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAAG-CACTA
*
108916758 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
108916789 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.06
40 58 0.92
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAAGCACTA
Found at i:108916806 original size:40 final size:38
Alignment explanation
Indices: 108916681--108916829 Score: 129
Period size: 40 Copynumber: 3.8 Consensus size: 38
108916671 ACGATTTGCA
* *
108916681 CAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-G
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAATTAC-CAG
* *** *
108916719 CACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAG
1 CA--AATGCCTTCGGGTCTTAGCCCGGATATAATTACCAG
* *
108916759 CACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAG
1 CA-AA-TGCCTTCGGGTCTTAGCCCGGATATAATTACCAG
* *
108916799 CATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 CA-AA-TGCCTTCGGGTCTTAGCCCGGATAT
108916830 CATTCAATTT
Statistics
Matches: 89, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
38 2 0.02
39 2 0.02
40 85 0.96
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (38 bp):
CAAATGCCTTCGGGTCTTAGCCCGGATATAATTACCAG
Found at i:108916812 original size:80 final size:80
Alignment explanation
Indices: 108916678--108916827 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
108916668 ATCACGATTT
* *
108916678 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
108916743 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
108916758 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
108916821 CCCGGAT
64 CCCGGAT
108916828 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:108919950 original size:24 final size:23
Alignment explanation
Indices: 108919906--108919950 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
108919896 TACATCAGTG
108919906 AAAGATTTATTGATTAGAAGCGT
1 AAAGATTTATTGATTAGAAGCGT
*
108919929 AAAGAGTTTCTTGAATTA-AAGC
1 AAAGA-TTTATTG-ATTAGAAGC
108919951 AGGGGAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 5 0.26
24 10 0.53
25 4 0.21
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (23 bp):
AAAGATTTATTGATTAGAAGCGT
Found at i:108922509 original size:40 final size:40
Alignment explanation
Indices: 108922464--108922593 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
108922454 CGGAATACAA
108922464 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
108922504 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
108922544 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
108922584 CCGGATATAA
1 CCGGATATAA
108922594 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:108922608 original size:40 final size:40
Alignment explanation
Indices: 108922464--108922627 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
108922454 CGGAATACAA
* **
108922464 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
108922504 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
108922544 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
108922584 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
108922624 CCGG
1 CCGG
108922628 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:108928133 original size:30 final size:30
Alignment explanation
Indices: 108928097--108928154 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
108928087 CTGAGCCTAG
*
108928097 GGGCAAAAGTGTAATTATGCAAAAGTTTAC
1 GGGCAAAAATGTAATTATGCAAAAGTTTAC
* *
108928127 GGGCAAAAATGTAATTTTGCCAAAGTTT
1 GGGCAAAAATGTAATTATGCAAAAGTTT
108928155 GTATTAAGTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.29
Consensus pattern (30 bp):
GGGCAAAAATGTAATTATGCAAAAGTTTAC
Found at i:108931441 original size:50 final size:50
Alignment explanation
Indices: 108931384--108931626 Score: 234
Period size: 50 Copynumber: 4.8 Consensus size: 50
108931374 GTAACCAAAG
** * *
108931384 CTATCTGGTACTTATATTAGCCTGCACTTAGTACTACACATGCGACCTAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* * * * * *
108931434 CTATCTGGTGCACGTAGTAGCCTGCACTTAGTACTACATACGTGATCGAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* * * * *
108931484 GTTGTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
1 -CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
* * *
108931535 CTATCTGGTACACATAGTAGCCTGTACTTAATACTACACACGTGACCTAAAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCT--AA
* *** * * *
108931587 CCATCTTAAACACATAATAGCCTGCACATATTACTACACA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
108931627 TGTGTTCTCA
Statistics
Matches: 153, Mismatches: 37, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
50 80 0.52
51 39 0.25
52 34 0.22
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (50 bp):
CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
Found at i:108937329 original size:12 final size:13
Alignment explanation
Indices: 108937312--108937340 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
108937302 ACTTATTCGG
108937312 TAAGTTTAAGTT-
1 TAAGTTTAAGTTA
108937324 TAAGTTTAAGTTA
1 TAAGTTTAAGTTA
108937337 TAAG
1 TAAG
108937341 AGCTTACTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (13 bp):
TAAGTTTAAGTTA
Found at i:108940319 original size:38 final size:38
Alignment explanation
Indices: 108940277--108940419 Score: 191
Period size: 38 Copynumber: 3.7 Consensus size: 38
108940267 GGCTTAAAGA
*
108940277 CCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAAT
1 CCCGCAGGCT-TCGTGCTGGAATTATATCCGGGTTAAAT
*
108940315 CCCGCAGGCTTCGTGCTAGTAA-TATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCT-GGAATTATATCCGGGTTAAAT
*
108940353 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAGT
1 CCCGCAGGCTTCGTGCTGGAATTATATCCGGGTTAAA-T
* * *
108940392 CCCGCAGGCCTAGTGCTGGTATTATATC
1 CCCGCAGGCTTCGTGCTGGAATTATATC
108940420 TGAACTTAAA
Statistics
Matches: 95, Mismatches: 6, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
37 3 0.03
38 62 0.65
39 30 0.32
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGAATTATATCCGGGTTAAAT
Found at i:108940448 original size:40 final size:39
Alignment explanation
Indices: 108940269--108940451 Score: 174
Period size: 38 Copynumber: 4.7 Consensus size: 39
108940259 TGTATCCAGG
* * *
108940269 CTTAAAGACCCGCAGGCTATA-TGCTGGAATTATATCCGG
1 CTTAAAGTCCCGCAGGCT-TAGTGCTGGTATTATATCCGA
* * * * *
108940308 GTTAAA-TCCCGCAGGCTTCGTGCTAGTAATATATCCGG
1 CTTAAAGTCCCGCAGGCTTAGTGCTGGTATTATATCCGA
* * *
108940346 GTTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATCCGG
1 CTTAAAGTCCCGCAGGCTTAGTGCTGGTATTATATCCGA
* * *
108940384 GTTAAAGTCCCGCAGGCCTAGTGCTGGTATTATATCTGAA
1 CTTAAAGTCCCGCAGGCTTAGTGCTGGTATTATATCCG-A
* * *
108940424 CTTAAAGTCCCACAGGTTTTGTGCTGGT
1 CTTAAAGTCCCGCAGGCTTAGTGCTGGT
108940452 GACTAGATTC
Statistics
Matches: 124, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
37 1 0.01
38 67 0.54
39 33 0.27
40 23 0.19
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (39 bp):
CTTAAAGTCCCGCAGGCTTAGTGCTGGTATTATATCCGA
Found at i:108949580 original size:24 final size:23
Alignment explanation
Indices: 108949548--108949656 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
108949538 ACCAAACTTT
* **
108949548 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
108949572 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
108949596 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
108949620 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
108949644 GCACACATAGTGC
1 GCACACATAGTGC
108949657 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:108949622 original size:48 final size:48
Alignment explanation
Indices: 108949548--108949656 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
108949538 ACCAAACTTT
* **
108949548 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
108949596 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
108949644 GCACACATAGTGC
1 GCACACATAGTGC
108949657 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:108951428 original size:39 final size:38
Alignment explanation
Indices: 108951301--108951429 Score: 161
Period size: 38 Copynumber: 3.4 Consensus size: 38
108951291 CGCAGCTATA
* * *
108951301 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTTA
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTTG
* *
108951339 TGCTGGTAATATATCCGGGTTAAATCCCGCAAG-CTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTT-G
* *
108951377 TGCTGGTATTATATTCGGGTTAAAGTCCCACAGGCCTTG
1 TGCTGGTATTATATCCGGGTTAAA-TCCCGCAGGCCTTG
*
108951416 TGCTTGTATTATAT
1 TGCTGGTATTATAT
108951430 ATGAACTTAA
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
37 2 0.03
38 52 0.67
39 21 0.27
40 3 0.04
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.34
Consensus pattern (38 bp):
TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTTG
Found at i:108956814 original size:20 final size:20
Alignment explanation
Indices: 108956789--108956838 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
108956779 GTGACCCCAA
108956789 TTTTCAAAATTTTCAATTTT
1 TTTTCAAAATTTTCAATTTT
**
108956809 TTTTCAAAATTTTCTGTTTT
1 TTTTCAAAATTTTCAATTTT
*
108956829 GTTTCAAAAT
1 TTTTCAAAAT
108956839 GAACCCCGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.28, C:0.10, G:0.04, T:0.58
Consensus pattern (20 bp):
TTTTCAAAATTTTCAATTTT
Found at i:108959968 original size:22 final size:21
Alignment explanation
Indices: 108959929--108959972 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
108959919 AATAATACAA
* *
108959929 AATTTATCATGATTAAATATT
1 AATTTATCATAATGAAATATT
108959950 AATTTATCATAAATGAAATATT
1 AATTTATCAT-AATGAAATATT
108959972 A
1 A
108959973 TTATTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.43
Consensus pattern (21 bp):
AATTTATCATAATGAAATATT
Found at i:108961866 original size:51 final size:51
Alignment explanation
Indices: 108961795--108961929 Score: 173
Period size: 51 Copynumber: 2.7 Consensus size: 51
108961785 TGAAAACATG
* *
108961795 ATCTTAAAAGATATGA-TTTATAATCTTAGAGATCTTAGATATGATATGTA
1 ATCTTAGAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
* * * ** * *
108961845 ATTTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTAGAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
*
108961896 ATCTTAGAAGATATGATTTTATATTCTTAGAGAT
1 ATCTTAGAAGATATGATTTTATAATCTTAGAGAT
108961930 TTGATTGTAG
Statistics
Matches: 68, Mismatches: 16, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
50 13 0.19
51 55 0.81
ACGTcount: A:0.39, C:0.05, G:0.13, T:0.43
Consensus pattern (51 bp):
ATCTTAGAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
Found at i:108967082 original size:51 final size:51
Alignment explanation
Indices: 108966996--108967119 Score: 160
Period size: 51 Copynumber: 2.5 Consensus size: 51
108966986 TGGAAACATG
** * *
108966996 ATCTTAAAAGATATGA-TTTATAATCTTAGAGATCTTAGATATGATACGTA
1 ATCTTAAAAGATATGATTTTATAAGATTACAGATCTTAGATAAGATACGTA
* * * *
108967046 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATTTTATAAGATTACAGATCTTAGATAAGATACGTA
*
108967097 ATCTTAGAAGATATGATTTTATA
1 ATCTTAAAAGATATGATTTTATA
108967120 TTCTTAGAGA
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
50 14 0.22
51 49 0.78
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.41
Consensus pattern (51 bp):
ATCTTAAAAGATATGATTTTATAAGATTACAGATCTTAGATAAGATACGTA
Found at i:108968510 original size:16 final size:17
Alignment explanation
Indices: 108968478--108968514 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
108968468 AAGTGATTTC
108968478 ATTTAGTTTTATGTTTT
1 ATTTAGTTTTATGTTTT
108968495 ATTTA-TTTT-TGTTTTT
1 ATTTAGTTTTATG-TTTT
108968511 ATTT
1 ATTT
108968515 TTATTGTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 2 0.11
16 12 0.63
17 5 0.26
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (17 bp):
ATTTAGTTTTATGTTTT
Found at i:108968515 original size:6 final size:6
Alignment explanation
Indices: 108968479--108968539 Score: 56
Period size: 6 Copynumber: 10.3 Consensus size: 6
108968469 AGTGATTTCA
* * *
108968479 TTTAGT TTTATGT TTTA-- TTTATT TTTGTT TTTATT TTTATT GTTATT
1 TTTATT TTTAT-T TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
108968526 TGTT-TT TTTATT TT
1 T-TTATT TTTATT TT
108968540 ATTATGCACT
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
4 4 0.09
5 2 0.04
6 32 0.71
7 7 0.16
ACGTcount: A:0.13, C:0.00, G:0.08, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:108968516 original size:29 final size:29
Alignment explanation
Indices: 108968479--108968542 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
108968469 AGTGATTTCA
* *
108968479 TTTAGTTTTATGTTTTATTTATTTTTGT-T
1 TTTATTTTTAT-TGTTATTTATTTTTGTAT
* *
108968508 TTTATTTTTATTGTTATTTGTTTTTTTAT
1 TTTATTTTTATTGTTATTTATTTTTGTAT
108968537 TTTATT
1 TTTATT
108968543 ATGCACTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 13 0.43
29 17 0.57
ACGTcount: A:0.14, C:0.00, G:0.08, T:0.78
Consensus pattern (29 bp):
TTTATTTTTATTGTTATTTATTTTTGTAT
Found at i:108978690 original size:19 final size:20
Alignment explanation
Indices: 108978633--108978693 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 20
108978623 ACAACTAAAT
*
108978633 AATTTATTATAACATTATTTA
1 AATTT-TTATAATATTATTTA
108978654 TAA-TTTTA-AATATCTATTTA
1 -AATTTTTATAATAT-TATTTA
108978674 AATTTTTATAATA-TATTTA
1 AATTTTTATAATATTATTTA
108978693 A
1 A
108978694 TTTGTAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
19 13 0.37
20 14 0.40
21 6 0.17
22 2 0.06
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (20 bp):
AATTTTTATAATATTATTTA
Found at i:108980541 original size:58 final size:57
Alignment explanation
Indices: 108980479--108980599 Score: 138
Period size: 58 Copynumber: 2.1 Consensus size: 57
108980469 CTCCTGTTTT
* * *
108980479 ATTTTTGCACTCATTTGGGTACTTAAACTTTCAAAATGCATC-AAAATGACCCTCAAAC
1 ATTTTTACACTCAATTGAG-ACTTAAACTTTCAAAATGCATCTAAAA-GACCCTCAAAC
* * * *
108980537 ATTTTTTACACTCAATTGAGACTTGAACTTTTAAGATGTATCTAAAAGACCCTCAAAC
1 A-TTTTTACACTCAATTGAGACTTAAACTTTCAAAATGCATCTAAAAGACCCTCAAAC
108980595 -TTTTT
1 ATTTTT
108980600 CAAGAAAAGC
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
56 5 0.09
58 30 0.56
59 19 0.35
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (57 bp):
ATTTTTACACTCAATTGAGACTTAAACTTTCAAAATGCATCTAAAAGACCCTCAAAC
Found at i:108980716 original size:26 final size:27
Alignment explanation
Indices: 108980680--108980824 Score: 88
Period size: 27 Copynumber: 5.3 Consensus size: 27
108980670 ATTGTTAAAT
* *
108980680 TTTAATAAAAATTTAAATAT-TAAAAA
1 TTTAATAAAAATTAAAAAATGTAAAAA
*
108980706 TTTATTAAAAATTAAAAAATGTAAAAA
1 TTTAATAAAAATTAAAAAATGTAAAAA
*
108980733 TCGTAA-AAAAA-TATAAAAATGGT-AAAA
1 T-TTAATAAAAATTA-AAAAAT-GTAAAAA
108980760 TTT-ATAAAAATTGTAAAAAAT-TATAAAA
1 TTTAATAAAAA-T-TAAAAAATGTA-AAAA
* * * *
108980788 TATTTAGAAATATAAAAAAAT-TATAAAA
1 T-TTAATAAAAATTAAAAAATGTA-AAAA
*
108980816 TTTTATAAA
1 TTTAATAAA
108980825 GTCATAAGAA
Statistics
Matches: 97, Mismatches: 10, Indels: 23
0.75 0.08 0.18
Matches are distributed among these distances:
25 1 0.01
26 26 0.27
27 30 0.31
28 30 0.31
29 5 0.05
30 5 0.05
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (27 bp):
TTTAATAAAAATTAAAAAATGTAAAAA
Found at i:108980725 original size:28 final size:27
Alignment explanation
Indices: 108980694--108980824 Score: 76
Period size: 28 Copynumber: 4.7 Consensus size: 27
108980684 ATAAAAATTT
108980694 AAATATTAAAAATTTATTAAAAATTAAA
1 AAATATTAAAAATTTA-TAAAAATTAAA
* * *
108980722 AAAT-GTAAAAATCGTA-AAAAAATATAA
1 AAATATTAAAAAT-TTATAAAAATTA-AA
** *
108980749 AAATGGT-AAAATTTATAAAAATTGTAA
1 AAATATTAAAAATTTATAAAAATT-AAA
*
108980776 AAA-ATTATAAAATATT-TAGAAATATAAA
1 AAATATTA-AAAAT-TTATAAAAAT-TAAA
108980804 AAA-ATTATAAAATTTTATAAA
1 AAATATTA-AAAA-TTTATAAA
108980825 GTCATAAGAA
Statistics
Matches: 81, Mismatches: 11, Indels: 21
0.72 0.10 0.19
Matches are distributed among these distances:
26 10 0.12
27 29 0.36
28 35 0.43
29 7 0.09
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.32
Consensus pattern (27 bp):
AAATATTAAAAATTTATAAAAATTAAA
Found at i:108980741 original size:19 final size:19
Alignment explanation
Indices: 108980719--108980885 Score: 83
Period size: 19 Copynumber: 8.8 Consensus size: 19
108980709 ATTAAAAATT
*
108980719 AAAAAATGTAAAAATCGTA
1 AAAAAATATAAAAATCGTA
*
108980738 AAAAAATATAAAAATGGT-
1 AAAAAATATAAAAATCGTA
** *
108980756 AAAATTTATAAAAATTGTA
1 AAAAAATATAAAAATCGTA
* *
108980775 AAAAATTATAAAATAT-TTA
1 AAAAAATATAAAA-ATCGTA
* * *
108980794 GAAATATAAAAAAAT--TA
1 AAAAAATATAAAAATCGTA
* * * * *
108980811 TAAAATTTTATAAAGTCATA
1 AAAAAATATA-AAAATCGTA
*
108980831 AGAAAATTATACAAAAT-GTA
1 A-AAAAATATA-AAAATCGTA
* **
108980851 AAGAAATATAAATTTCGTA
1 AAAAAATATAAAAATCGTA
108980870 AAAAAATTATAAAAAT
1 AAAAAA-TATAAAAAT
108980886 TATTGTACCA
Statistics
Matches: 111, Mismatches: 29, Indels: 15
0.72 0.19 0.10
Matches are distributed among these distances:
17 7 0.06
18 24 0.22
19 54 0.49
20 14 0.13
21 12 0.11
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (19 bp):
AAAAAATATAAAAATCGTA
Found at i:108980831 original size:29 final size:28
Alignment explanation
Indices: 108980774--108980841 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 28
108980764 TAAAAATTGT
108980774 AAAAAATTATAAAATATTTAGAAATATA
1 AAAAAATTATAAAATATTTAGAAATATA
*
108980802 AAAAAATTATAAAAT-TTTATAAAGTCATA
1 AAAAAATTATAAAATATTTAGAAA-T-ATA
*
108980831 AGAAAATTATA
1 AAAAAATTATA
108980842 CAAAATGTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 7 0.19
28 16 0.44
29 13 0.36
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.32
Consensus pattern (28 bp):
AAAAAATTATAAAATATTTAGAAATATA
Found at i:108981051 original size:19 final size:19
Alignment explanation
Indices: 108981029--108981113 Score: 64
Period size: 19 Copynumber: 4.3 Consensus size: 19
108981019 ATTTTTTATG
108981029 ATTTTTATAAAATTTTACA
1 ATTTTTATAAAATTTTACA
* *** *
108981048 ATTTTTTTATTTTTTTACC
1 ATTTTTATAAAATTTTACA
108981067 ATTTTTATAAAATAATTT-CTA
1 ATTTTTATAAAAT--TTTAC-A
* *
108981088 ATTTTTATTAAAATTTAATA
1 ATTTTTA-TAAAATTTTACA
108981108 ATTTTT
1 ATTTTT
108981114 TTTTTATTGT
Statistics
Matches: 49, Mismatches: 12, Indels: 9
0.70 0.17 0.13
Matches are distributed among these distances:
19 23 0.47
20 10 0.20
21 10 0.20
22 6 0.12
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTTTTATAAAATTTTACA
Found at i:108981324 original size:84 final size:84
Alignment explanation
Indices: 108981160--108981324 Score: 188
Period size: 83 Copynumber: 2.0 Consensus size: 84
108981150 ATAAGATGAG
* * * *
108981160 GGGCTTAATTGTTTTTCTAAAAAATTTTGAGAATTTTTTTGATGCATTTTGAAAGTTCAAGTACC
1 GGGCTTAATTATTTTTCTAAAAAAGTTTGAGAATTTTTTTGATACATTTTGAAAATTCAAGTACC
*
108981225 AAATGAGTGAAAAAAACAA
66 AAATAAGTGAAAAAAACAA
* * * * * * *
108981244 GGGCTTAATTATTTTT-TTAATAAGTTTGAGGATTTTTTTTATATATTTTGAAAATTTAAGTGCT
1 GGGCTTAATTATTTTTCTAAAAAAGTTTGAGAATTTTTTTGATACATTTTGAAAATTCAAGTAC-
* *
108981308 CAATTAAGTGTAAAAAA
65 CAAATAAGTGAAAAAAA
108981325 GAAAATAAAC
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
83 37 0.56
84 29 0.44
ACGTcount: A:0.36, C:0.06, G:0.16, T:0.42
Consensus pattern (84 bp):
GGGCTTAATTATTTTTCTAAAAAAGTTTGAGAATTTTTTTGATACATTTTGAAAATTCAAGTACC
AAATAAGTGAAAAAAACAA
Found at i:108982874 original size:18 final size:18
Alignment explanation
Indices: 108982838--108982872 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
108982828 TTTACGATAA
108982838 CATTGATTTCTCATTTTT
1 CATTGATTTCTCATTTTT
*
108982856 CATTGA-TTCTTATTTTT
1 CATTGATTTCTCATTTTT
108982873 TCCATATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.17, C:0.14, G:0.06, T:0.63
Consensus pattern (18 bp):
CATTGATTTCTCATTTTT
Found at i:108986802 original size:26 final size:26
Alignment explanation
Indices: 108986762--108986869 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
108986752 TGGTACAAAT
108986762 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
108986788 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
108986814 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
108986840 TGATAATGGTTTAGGTAAATGTTCCG
1 TGATAATGGGTTAGGTAAATGTTCCA
108986866 TGAT
1 TGAT
108986870 GGGAATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:108989319 original size:2 final size:2
Alignment explanation
Indices: 108989312--108989336 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
108989302 ATAATATTAG
108989312 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
108989337 ATAGTATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:108989404 original size:12 final size:11
Alignment explanation
Indices: 108989365--108989400 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 11
108989355 ATGACTAATG
108989365 ATAT-TAAAAT
1 ATATATAAAAT
108989375 ATATATAATAAT
1 ATATATAA-AAT
108989387 ATATATAAAAT
1 ATATATAAAAT
108989398 ATA
1 ATA
108989401 ATATTAAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 4 0.17
11 9 0.38
12 11 0.46
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
ATATATAAAAT
Found at i:108989617 original size:13 final size:14
Alignment explanation
Indices: 108989599--108989629 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
108989589 ATGTACGAAT
108989599 ATATACATATA-TA
1 ATATACATATATTA
108989612 ATATACATATATTA
1 ATATACATATATTA
108989626 ATAT
1 ATAT
108989630 TAATAATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:108989729 original size:12 final size:12
Alignment explanation
Indices: 108989691--108989730 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
108989681 TGAAAATAAT
108989691 TAAT-ATATTAA
1 TAATAATATTAA
* *
108989702 TAAAAATACTAA
1 TAATAATATTAA
108989714 TAATAATATTAA
1 TAATAATATTAA
108989726 TAATA
1 TAATA
108989731 TGTAAAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
11 3 0.12
12 21 0.88
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (12 bp):
TAATAATATTAA
Found at i:108990220 original size:20 final size:20
Alignment explanation
Indices: 108990195--108990238 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
108990185 AGAAGGGGAA
108990195 GGAGAGAAAAGA-GGGAGCGG
1 GGAGAGAAAAGAGGGGAG-GG
*
108990215 GGAGAGAAGAGAGGGGAGGG
1 GGAGAGAAAAGAGGGGAGGG
108990235 GGAG
1 GGAG
108990239 CTCTGGCCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.36, C:0.02, G:0.61, T:0.00
Consensus pattern (20 bp):
GGAGAGAAAAGAGGGGAGGG
Found at i:108991650 original size:79 final size:81
Alignment explanation
Indices: 108991549--108991733 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
108991539 ACGACTCGCT
** * * *
108991549 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGGACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
108991612 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* * **
108991629 CAAATGCCTTCAGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
108991693 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
108991709 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
108991734 CATCATTCGA
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.03
79 52 0.59
80 33 0.38
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:108991663 original size:39 final size:40
Alignment explanation
Indices: 108991549--108991733 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
108991539 ACGACTCGCT
** * * *
108991549 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCA
* * *
108991589 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* * *
108991629 CAAATGCCTTCAGG-CTTAGCCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* * * * *
108991668 CGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCA
108991709 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
108991734 CATCATTCGA
Statistics
Matches: 117, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 73 0.62
41 11 0.09
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
Found at i:108999888 original size:51 final size:52
Alignment explanation
Indices: 108999829--108999935 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 52
108999819 TGGTACAAAT
108999829 TGATAATGGGTTAGGTAAATGTTCCATGACAATGG-ATAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGACAATGGTATAGGTAAATATTCCA
* * *
108999880 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGACAATGGTATAGGTAAATATTCCA
108999932 TGAT
1 TGAT
108999936 GGGAATTTCA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 34 0.65
52 18 0.35
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGACAATGGTATAGGTAAATATTCCA
Found at i:108999904 original size:26 final size:26
Alignment explanation
Indices: 108999829--108999935 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
108999819 TGGTACAAAT
108999829 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
108999855 TGACAAT-GGATAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
108999880 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
108999906 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
108999932 TGAT
1 TGAT
108999936 GGGAATTTCA
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
25 22 0.30
26 51 0.70
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:109003077 original size:17 final size:17
Alignment explanation
Indices: 109003055--109003096 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
109003045 AAGTAAACAA
*
109003055 AGTAAGCTATAAATCTT
1 AGTAAGCTATAAAGCTT
109003072 AGTAAGCTATAAAGCTT
1 AGTAAGCTATAAAGCTT
109003089 AGTAAGCT
1 AGTAAGCT
109003097 CGTATGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (17 bp):
AGTAAGCTATAAAGCTT
Found at i:109006831 original size:40 final size:39
Alignment explanation
Indices: 109006768--109006853 Score: 109
Period size: 40 Copynumber: 2.2 Consensus size: 39
109006758 TAACGACTTA
**
109006768 TCGGCTAAAATGACACTTAGTGTGCGGTTCGAAATAGCT
1 TCGGCTAAAATGACACTTAGTGTGCAATTCGAAATAGCT
* * * *
109006807 TCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAA-TGACACTTAGTGTGCAATTCGAAATAGCT
109006847 TCGGCTA
1 TCGGCTA
109006854 TATATATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 10 0.25
40 30 0.75
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (39 bp):
TCGGCTAAAATGACACTTAGTGTGCAATTCGAAATAGCT
Found at i:109006859 original size:2 final size:2
Alignment explanation
Indices: 109006852--109006899 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
109006842 TAGCTTCGGC
*
109006852 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
109006894 TA TA TA
1 TA TA TA
109006900 AATGGAACTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:109007101 original size:20 final size:20
Alignment explanation
Indices: 109007076--109007117 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
109007066 ACAGAAACTT
109007076 AACTTAATATGAAATCCATG
1 AACTTAATATGAAATCCATG
109007096 AACTTAATATGAAATCCATG
1 AACTTAATATGAAATCCATG
109007116 AA
1 AA
109007118 TGGTAAGTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.29
Consensus pattern (20 bp):
AACTTAATATGAAATCCATG
Found at i:109015821 original size:16 final size:16
Alignment explanation
Indices: 109015800--109015832 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
109015790 TTTACGGGTT
109015800 TGGCTACCAGAGGATC
1 TGGCTACCAGAGGATC
109015816 TGGCTACCAGAGGATC
1 TGGCTACCAGAGGATC
109015832 T
1 T
109015833 TATTCGACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.21
Consensus pattern (16 bp):
TGGCTACCAGAGGATC
Found at i:109020239 original size:47 final size:46
Alignment explanation
Indices: 109020178--109020352 Score: 171
Period size: 47 Copynumber: 3.7 Consensus size: 46
109020168 TGTGTGCTAG
*
109020178 TGTAAGACATGTCTGGGACAT-GCATCGGCCACATTATGAAAGCCAA
1 TGTAAGACATGTCTGGGACATGGCATCGG-CACATTATGAGAGCCAA
* *
109020224 TGTAAGACCATGTCTGGGACATGGCATCGG--CATTGAGATGAGAGCTAG
1 TGTAAGA-CATGTCTGGGACATGGCATCGGCACATT---ATGAGAGCCAA
* * *
109020272 TGTAAGACATGTCTGGGACAT-GCATCGGCAC-GTATAGAGGTGTCAA
1 TGTAAGACATGTCTGGGACATGGCATCGGCACATTAT-GA-GAGCCAA
* *
109020318 TGTAAGACCATGTTTGGGACATGGCATCGACACAT
1 TGTAAGA-CATGTCTGGGACATGGCATCGGCACAT
109020353 GCATCGGCAC
Statistics
Matches: 106, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
44 2 0.02
45 6 0.06
46 24 0.23
47 42 0.40
48 32 0.30
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGGCATCGGCACATTATGAGAGCCAA
Found at i:109020336 original size:94 final size:94
Alignment explanation
Indices: 109020173--109020346 Score: 271
Period size: 94 Copynumber: 1.9 Consensus size: 94
109020163 TTATATGTGT
109020173 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAAGCCAATGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAAGCCAATGTAAGACCATGTC
109020238 TGGGACATGGCATCGGCATTGAGATGAGA
66 TGGGACATGGCATCGGCATTGAGATGAGA
* ** *
109020267 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CAC-GTATAGAGGTGTCAATGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTAT-GA-AAGCCAATGTAAGACCATG
*
109020330 TTTGGGACATGGCATCG
64 TCTGGGACATGGCATCG
109020347 ACACATGCAT
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
92 3 0.04
93 5 0.07
94 65 0.89
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAAGCCAATGTAAGACCATGTC
TGGGACATGGCATCGGCATTGAGATGAGA
Found at i:109020368 original size:60 final size:60
Alignment explanation
Indices: 109020289--109020406 Score: 218
Period size: 60 Copynumber: 2.0 Consensus size: 60
109020279 CATGTCTGGG
* *
109020289 ACATGCATCGGCACGTATAGAGGTGTCAATGTAAGACCATGTTTGGGACATGGCATCGAC
1 ACATGCATCGGCACGTATAGAGGTGTCAATATAAGACCATGCTTGGGACATGGCATCGAC
109020349 ACATGCATCGGCACGTATAGAGGTGTCAATATAAGACCATGCTTGGGACATGGCATCG
1 ACATGCATCGGCACGTATAGAGGTGTCAATATAAGACCATGCTTGGGACATGGCATCG
109020407 GACAGATATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (60 bp):
ACATGCATCGGCACGTATAGAGGTGTCAATATAAGACCATGCTTGGGACATGGCATCGAC
Found at i:109024555 original size:11 final size:11
Alignment explanation
Indices: 109024539--109024563 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
109024529 ATGATCAGAC
109024539 TAAAGATATTG
1 TAAAGATATTG
109024550 TAAAGATATTG
1 TAAAGATATTG
109024561 TAA
1 TAA
109024564 CAGCCCGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (11 bp):
TAAAGATATTG
Found at i:109025627 original size:6 final size:6
Alignment explanation
Indices: 109025616--109025703 Score: 167
Period size: 6 Copynumber: 14.7 Consensus size: 6
109025606 ATTGCATGAA
109025616 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
*
109025664 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTTT ATGT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGT
109025704 CTTTATGAAA
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
6 81 1.00
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (6 bp):
ATGTAT
Found at i:109025875 original size:48 final size:48
Alignment explanation
Indices: 109025819--109025982 Score: 229
Period size: 48 Copynumber: 3.4 Consensus size: 48
109025809 ATGTGAGTAT
**
109025819 TGAGATCCCGTATAAGACCATATCTGGGATATGGCATTGATATCGAAA
1 TGAGATCCCGTATAAGACCATATCTGGGATATAACATTGATATCGAAA
* * *
109025867 TGAGATCCCGTTTAAGACCATATCTGGGATATAACATCGGTATCGAAA
1 TGAGATCCCGTATAAGACCATATCTGGGATATAACATTGATATCGAAA
* * * * *
109025915 TGAGATCCCGTGTAAGACCATATCTGGGATATAAAATTAACATCGATA
1 TGAGATCCCGTATAAGACCATATCTGGGATATAACATTGATATCGAAA
*
109025963 TGAGGTCCCGTATAAGACCA
1 TGAGATCCCGTATAAGACCA
109025983 CGTTTAGGAC
Statistics
Matches: 102, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 102 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (48 bp):
TGAGATCCCGTATAAGACCATATCTGGGATATAACATTGATATCGAAA
Found at i:109026014 original size:96 final size:96
Alignment explanation
Indices: 109025819--109026038 Score: 217
Period size: 96 Copynumber: 2.3 Consensus size: 96
109025809 ATGTGAGTAT
* *** * * *
109025819 TGAGATCCCGTATAAGACCATATCTGGGATATGGCATTGATATCGAAATGAGATCCCGTTTAAGA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATAAAATTAACATCGAAATGAGATCCCGTATAAGA
* * * * *
109025884 CCATATCTGGGATATAACATCGGTATCGAAA
66 CCACATCTAGGACATAACATCGGGACCGAAA
* *
109025915 TGAGATCCCGTGTAAGACCATATCTGGGATATAAAATTAACATCGATATGAGGTCCCGTATAAGA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATAAAATTAACATCGAAATGAGATCCCGTATAAGA
* * ** **
109025980 CCACGTTTAGGACATGGCATCGGGACCGTTA
66 CCACATCTAGGACATAACATCGGGACCGAAA
* * *
109026011 TGAGA-CTTCGTGTAAGCCCATAGCTGGG
1 TGAGATC-CCGTGTAAGACCATATCTGGG
109026039 CTATTGGCAT
Statistics
Matches: 100, Mismatches: 23, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
95 1 0.01
96 99 0.99
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (96 bp):
TGAGATCCCGTGTAAGACCATATCTGGGATATAAAATTAACATCGAAATGAGATCCCGTATAAGA
CCACATCTAGGACATAACATCGGGACCGAAA
Found at i:109041436 original size:72 final size:73
Alignment explanation
Indices: 109041348--109041652 Score: 235
Period size: 72 Copynumber: 4.2 Consensus size: 73
109041338 ATTAATTATC
* *
109041348 AAGTAAAATCGTTTATTTAATTATGTGTTTTTAAAAAGGTTAATTTAGTTCAATTTATT-AAGTT
1 AAGTAAAACCGTTTATTTAATTATGTGTTTTTAAAAAGATTAATTTAGTTCAATTTATTAAAGTT
109041412 TTGATATT
66 TTGATATT
** * *** * * * ** *
109041420 AAGCGAAACCGTTTATTTAGTTAT-ACATTTTCAGAAGCTTAATTTAGTTTGATTTATTAAAG-C
1 AAGTAAAACCGTTTATTTAATTATGTGTTTTTAAAAAGATTAATTTAGTTCAATTTATTAAAGTT
**
109041483 TTGATACA
66 TTGATATT
* * * ** * * *
109041491 AAGTAAAACCGCTTGTTCAATTATGCATTTTTAAAAAAAATAATTTAGTTCAATTTATTGAA-TT
1 AAGTAAAACCGTTTATTTAATTATGTGTTTTTAAAAAGATTAATTTAGTTCAATTTATTAAAGTT
109041555 TTGATATT
66 TTGATATT
* * * * * * * ** **
109041563 AAGTAGAACCGTTTATTCAAGTTATATG-TTTTGAGAAGATTAAATTAATTTGATTT-TTTGAGT
1 AAGTAAAACCGTTTATTTAA-TTATGTGTTTTTAAAAAGATTAATTTAGTTCAATTTATTAAAGT
109041626 TTTGATATT
65 TTTGATATT
*
109041635 AAGTAAAATCGTTTATTT
1 AAGTAAAACCGTTTATTT
109041653 GGTAATATTA
Statistics
Matches: 174, Mismatches: 54, Indels: 10
0.73 0.23 0.04
Matches are distributed among these distances:
71 53 0.30
72 117 0.67
73 4 0.02
ACGTcount: A:0.35, C:0.07, G:0.13, T:0.45
Consensus pattern (73 bp):
AAGTAAAACCGTTTATTTAATTATGTGTTTTTAAAAAGATTAATTTAGTTCAATTTATTAAAGTT
TTGATATT
Found at i:109041823 original size:13 final size:13
Alignment explanation
Indices: 109041805--109041829 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
109041795 ATGGGAATGA
109041805 ATTCAAATCTTAT
1 ATTCAAATCTTAT
109041818 ATTCAAATCTTA
1 ATTCAAATCTTA
109041830 ATTGTGTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTCAAATCTTAT
Found at i:109044720 original size:8 final size:8
Alignment explanation
Indices: 109044707--109044731 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
109044697 TTAAAAATAT
109044707 ATATTATA
1 ATATTATA
109044715 ATATTATA
1 ATATTATA
109044723 ATATTATA
1 ATATTATA
109044731 A
1 A
109044732 CTTAAATGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
ATATTATA
Found at i:109045556 original size:24 final size:24
Alignment explanation
Indices: 109045529--109045575 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
109045519 ATTGAAATGG
109045529 ATTG-ATTTAATATGTGA-TGAATTT
1 ATTGAATTT-ATAT-TGATTGAATTT
109045553 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
109045576 GATATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 14 0.67
25 4 0.19
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:109045855 original size:40 final size:39
Alignment explanation
Indices: 109045735--109045868 Score: 110
Period size: 40 Copynumber: 3.4 Consensus size: 39
109045725 ACTTCGAGTT
* * * * *
109045735 GATGAGACATTAGTTGTCAATCTATTACTTCAAATTAATTC
1 GATGAGACACTGGGTGTCAAT-TATTACTTCGAATT-ATCC
* * ** *
109045776 GGTGAGACACTGGATGTCAA-T-TTACTTCGGGTTAACC
1 GATGAGACACTGGGTGTCAATTATTACTTCGAATTATCC
*
109045813 GATAAGACACTGGGTGTCAAATTATTACTTCGAATTATCC
1 GATGAGACACTGGGTGTC-AATTATTACTTCGAATTATCC
* *
109045853 GATGAGGCACTAGGTG
1 GATGAGACACTGGGTG
109045869 CCAAACTAGT
Statistics
Matches: 72, Mismatches: 18, Indels: 7
0.74 0.19 0.07
Matches are distributed among these distances:
37 17 0.24
38 11 0.15
39 2 0.03
40 26 0.36
41 16 0.22
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (39 bp):
GATGAGACACTGGGTGTCAATTATTACTTCGAATTATCC
Found at i:109047683 original size:21 final size:21
Alignment explanation
Indices: 109047657--109047708 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
109047647 GTCAGCTAAA
109047657 AATGCATGATCACAATTATTC
1 AATGCATGATCACAATTATTC
109047678 AATGCATGATCACAATTATTC
1 AATGCATGATCACAATTATTC
109047699 AATGCATGAT
1 AATGCATGAT
109047709 TTAAAGTTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (21 bp):
AATGCATGATCACAATTATTC
Found at i:109049831 original size:5 final size:5
Alignment explanation
Indices: 109049821--109049862 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
109049811 AAATGTTAAG
109049821 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA
109049863 ATAAAACAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:109051681 original size:54 final size:54
Alignment explanation
Indices: 109051613--109051748 Score: 218
Period size: 54 Copynumber: 2.5 Consensus size: 54
109051603 TCTTACGGCA
* *
109051613 GGATTACCAATCCAGGTTAAATCCCTTATAACATAAACTCAAGGAGTATTGTCG
1 GGATTACCATTCCAGGCTAAATCCCTTATAACATAAACTCAAGGAGTATTGTCG
* * *
109051667 GGATTACCATTCCAGGCTAAATCCCTCATGACATAAATTCAAGGAGTATTGTCG
1 GGATTACCATTCCAGGCTAAATCCCTTATAACATAAACTCAAGGAGTATTGTCG
*
109051721 GGATTACCATTTCAGGCTAAATCCCTTA
1 GGATTACCATTCCAGGCTAAATCCCTTA
109051749 CAACGACAAT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 75 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (54 bp):
GGATTACCATTCCAGGCTAAATCCCTTATAACATAAACTCAAGGAGTATTGTCG
Found at i:109055814 original size:43 final size:43
Alignment explanation
Indices: 109055762--109056001 Score: 227
Period size: 43 Copynumber: 5.6 Consensus size: 43
109055752 AAAGCGCTGT
* * *
109055762 TAAAAGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGTGTCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGGAAAAGTGCCGC
* * *
109055805 TAAAGGTCATGTTCTATAGCTGCGTTTCTGGGAAAAGCGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGGAAAAGTGCCGC
* * *
109055848 TAAAGGTCATGTCCTGTAGCGGCGTTTGTGAGAAAAGTGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGGAAAAGTGCCGC
* ** * * * *
109055891 TAAAGGTCATG-TCATGTAGTAGTGTCTGT-GGAAAAG-CCCCC
1 TAAAGGTCATGTTC-TATAGCGGCGTTTGTGGGAAAAGTGCCGC
* * * * ** *
109055932 TAAAAGTCATGTTTTATAGTGGCGTTTTTGTCAGAAA-CGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGGA-AAAGTGCCGC
109055975 TAAAGGTCATGTTCTATAGCGGCGTTT
1 TAAAGGTCATGTTCTATAGCGGCGTTT
109056002 ATATGGAAAA
Statistics
Matches: 158, Mismatches: 34, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
41 23 0.15
42 9 0.06
43 126 0.80
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (43 bp):
TAAAGGTCATGTTCTATAGCGGCGTTTGTGGGAAAAGTGCCGC
Found at i:109055896 original size:86 final size:87
Alignment explanation
Indices: 109055751--109056011 Score: 275
Period size: 86 Copynumber: 3.0 Consensus size: 87
109055741 CATTTTTGGA
* * * * *
109055751 AAAAGCGCTGTTAAAAGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGTGTCGCTAAAGGTCATG
1 AAAAGCGCCGCTAAAAGTCATGTTCTATAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGTCATG
109055816 TTCTATAGCTGCGTTTCTG-GG
66 TTCTATAGCTGCGTTTCTGTGG
* * *
109055837 AAAAGCGCCGCTAAAGGTCATGTCCTGTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGTCATG
1 AAAAGCGCCGCTAAAAGTCATGTTCTATAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGTCATG
* * *
109055902 -TCATGTAG-T-AGTGTCTGTGG
66 TTC-TATAGCTGCGTTTCTGTGG
* * * * *
109055922 AAAAGC-CCCCTAAAAGTCATGTTTTATAGTGGCGTTTTTGTCAG-AAA-CGCCGCTAAAGGTCA
1 AAAAGCGCCGCTAAAAGTCATGTTCTATAGCGGCG--TTTGTGAGAAAAGTGCCGCTAAAGGTCA
* * *
109055984 TGTTCTATAGCGGCGTTTATATGG
64 TGTTCTATAGCTGCGTTTCTGTGG
109056008 AAAA
1 AAAA
109056012 ATTTAACAGC
Statistics
Matches: 144, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
84 48 0.33
85 16 0.11
86 80 0.56
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (87 bp):
AAAAGCGCCGCTAAAAGTCATGTTCTATAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGTCATG
TTCTATAGCTGCGTTTCTGTGG
Found at i:109058028 original size:5 final size:5
Alignment explanation
Indices: 109058020--109058067 Score: 87
Period size: 5 Copynumber: 9.6 Consensus size: 5
109058010 ATATGGGATG
*
109058020 TTTTG TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTT
109058068 CTTTAAGTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 42 1.00
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:109069135 original size:23 final size:23
Alignment explanation
Indices: 109069109--109069156 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
109069099 GTCATTATAT
109069109 ATGAACTCAATTGTGGATATTTC
1 ATGAACTCAATTGTGGATATTTC
*
109069132 ATGAACTCAGTTGTGGATATTTC
1 ATGAACTCAATTGTGGATATTTC
109069155 AT
1 AT
109069157 TTTTTTAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (23 bp):
ATGAACTCAATTGTGGATATTTC
Found at i:109070380 original size:82 final size:82
Alignment explanation
Indices: 109070265--109070468 Score: 309
Period size: 82 Copynumber: 2.5 Consensus size: 82
109070255 GGTATACATC
* * *
109070265 TTTCAACAAATTATTTAAAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAATAG
1 TTTCAACAAATCATTT-CAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAACAG
*
109070330 TAAGATGTTAACCAACCA
65 TAAGATATTAACCAACCA
* * * *
109070348 TTTGAACAAATCATTTCAAAACACAAAAAAAATATGTTATACTAACAAAATGATCCTATAGCAGT
1 TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAACAGT
*
109070413 AATATATTAACCAACCA
66 AAGATATTAACCAACCA
*
109070430 TTTCAACAAATCATTTCAAAAAACAAACAAAATGTGTTA
1 TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTA
109070469 AAATCTCAAT
Statistics
Matches: 108, Mismatches: 13, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
82 94 0.87
83 14 0.13
ACGTcount: A:0.51, C:0.16, G:0.06, T:0.27
Consensus pattern (82 bp):
TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAATGATCCTATAACAGT
AAGATATTAACCAACCA
Found at i:109072163 original size:93 final size:93
Alignment explanation
Indices: 109072051--109072222 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
109072041 GCCCATAAGT
* *
109072051 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
109072116 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
109072144 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
109072209 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
109072223 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:109072218 original size:46 final size:46
Alignment explanation
Indices: 109072043--109072218 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
109072033 TGTAACCCGC
* * *
109072043 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
109072089 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
109072139 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
109072182 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
109072219 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:109074646 original size:30 final size:30
Alignment explanation
Indices: 109074602--109074690 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
109074592 CAAAGATAAC
109074602 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
109074631 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
109074661 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
109074691 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:109074650 original size:15 final size:15
Alignment explanation
Indices: 109074602--109074681 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
109074592 CAAAGATAAC
*
109074602 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
109074616 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
109074631 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
109074646 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
109074661 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
109074676 AAGAAA
1 AAGAAA
109074682 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:109074690 original size:15 final size:15
Alignment explanation
Indices: 109074613--109074690 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
109074603 AGAAAACCGA
109074613 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
109074628 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
109074642 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
109074657 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
109074673 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
109074688 ATA
1 ATA
109074691 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:109077715 original size:93 final size:93
Alignment explanation
Indices: 109077603--109077774 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
109077593 GCCCATAAGT
* *
109077603 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
109077668 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
109077696 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
109077761 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
109077775 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:109077770 original size:46 final size:46
Alignment explanation
Indices: 109077595--109077770 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
109077585 TGTAACCCGC
* * *
109077595 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
109077641 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
109077691 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
109077734 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
109077771 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:109084283 original size:17 final size:17
Alignment explanation
Indices: 109084261--109084294 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
109084251 AAATGACAAA
*
109084261 AATATTTTTTTATTTTT
1 AATATTATTTTATTTTT
*
109084278 AATATTATTTTCTTTTT
1 AATATTATTTTATTTTT
109084295 TTTTCTCTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (17 bp):
AATATTATTTTATTTTT
Found at i:109085221 original size:34 final size:34
Alignment explanation
Indices: 109085178--109085248 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
109085168 GGGTATCAGT
109085178 TTGATGAGAGGTAAAATAGCAATTGACTAATGAA
1 TTGATGAGAGGTAAAATAGCAATTGACTAATGAA
109085212 TTGATGAGAGGTAAAATAGCAATTGACTAATGAA
1 TTGATGAGAGGTAAAATAGCAATTGACTAATGAA
109085246 TTG
1 TTG
109085249 GTACAAGTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.42, C:0.06, G:0.24, T:0.28
Consensus pattern (34 bp):
TTGATGAGAGGTAAAATAGCAATTGACTAATGAA
Done.