Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 35 of 433
Found at i:9094920 original size:21 final size:21
Alignment explanation
Indices: 9094895--9094948 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
9094885 GAACAGCACC
9094895 ACACGCCCGTGTGAACCAAAG
1 ACACGCCCGTGTGAACCAAAG
9094916 ACACGCCCGTGTGAACCAAAG
1 ACACGCCCGTGTGAACCAAAG
9094937 ACACGCCCGTGT
1 ACACGCCCGTGT
9094949 TGTCACCCCG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.30, C:0.35, G:0.24, T:0.11
Consensus pattern (21 bp):
ACACGCCCGTGTGAACCAAAG
Found at i:9097112 original size:8 final size:8
Alignment explanation
Indices: 9097095--9097139 Score: 54
Period size: 8 Copynumber: 5.4 Consensus size: 8
9097085 ATTATATGCT
*
9097095 TTATTTTA
1 TTATTATA
9097103 TTATTATA
1 TTATTATA
9097111 TTATATTATA
1 -T-TATTATA
*
9097121 TTAATATA
1 TTATTATA
9097129 TTATTATA
1 TTATTATA
9097137 TTA
1 TTA
9097140 ATTTCTTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
8 23 0.72
9 2 0.06
10 7 0.22
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TTATTATA
Found at i:9097117 original size:13 final size:13
Alignment explanation
Indices: 9097096--9097139 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
9097086 TTATATGCTT
*
9097096 TATTTTATTATTA
1 TATTATATTATTA
9097109 TATTATATTA-TA
1 TATTATATTATTA
*
9097121 TTAATATATTATTA
1 -TATTATATTATTA
9097135 TATTA
1 TATTA
9097140 ATTTCTTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 2 0.08
13 22 0.85
14 2 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TATTATATTATTA
Found at i:9097117 original size:18 final size:18
Alignment explanation
Indices: 9097077--9097132 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
9097067 TTATTTCTTT
*
9097077 TATTTT-TTATTATATGCTT
1 TATTTTATTATTATAT--TA
9097096 TATTTTATTATTATATTA
1 TATTTTATTATTATATTA
* *
9097114 TATTATATTAATATATTA
1 TATTTTATTATTATATTA
9097132 T
1 T
9097133 TATATTAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 18 0.55
19 6 0.18
20 9 0.27
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (18 bp):
TATTTTATTATTATATTA
Found at i:9097136 original size:16 final size:17
Alignment explanation
Indices: 9097094--9097141 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
9097084 TATTATATGC
* *
9097094 TTTATTTTATTATTATA
1 TTTATTATATTAATATA
9097111 TTATATTATATTAATATA
1 TT-TATTATATTAATATA
9097129 -TTATTATATTAAT
1 TTTATTATATTAAT
9097142 TTCTTAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 12 0.43
17 3 0.11
18 13 0.46
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTATTATATTAATATA
Found at i:9100455 original size:18 final size:17
Alignment explanation
Indices: 9100432--9100465 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9100422 CTCGTGTTTA
9100432 TTTTATATTATCTTTTTC
1 TTTTATATTAT-TTTTTC
*
9100450 TTTTATTTTATTTTTT
1 TTTTATATTATTTTTT
9100466 GCGGTTTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTATATTATTTTTTC
Found at i:9108625 original size:2 final size:2
Alignment explanation
Indices: 9108618--9108658 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
9108608 TTATTCAACA
9108618 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
9108659 CCAAAAGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:9113775 original size:22 final size:22
Alignment explanation
Indices: 9113745--9113787 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
9113735 TTTAAAATAA
* * *
9113745 TATTTTAAAATTTATATTTTAC
1 TATTATAAAAATTATAATTTAC
9113767 TATTATAAAAATTATAATTTA
1 TATTATAAAAATTATAATTTA
9113788 ATTTCAACCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (22 bp):
TATTATAAAAATTATAATTTAC
Found at i:9115257 original size:17 final size:18
Alignment explanation
Indices: 9115235--9115321 Score: 60
Period size: 17 Copynumber: 5.1 Consensus size: 18
9115225 TGATAAAAAT
9115235 ATAATTT-TATTATTT-TA
1 ATAATTTATA-TATTTATA
9115252 ATAATTTATATATTTATA
1 ATAATTTATATATTTATA
* *** *
9115270 AT-CTTTATA-AAAAATT
1 ATAATTTATATATTTATA
*
9115286 ATATTTTAT-TATTT-TA
1 ATAATTTATATATTTATA
*
9115302 ATAATCTATATATTTATA
1 ATAATTTATATATTTATA
9115320 AT
1 AT
9115322 TTTTATCAAT
Statistics
Matches: 52, Mismatches: 12, Indels: 11
0.69 0.16 0.15
Matches are distributed among these distances:
16 13 0.25
17 29 0.56
18 10 0.19
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (18 bp):
ATAATTTATATATTTATA
Found at i:9115266 original size:25 final size:24
Alignment explanation
Indices: 9115240--9115334 Score: 93
Period size: 24 Copynumber: 3.8 Consensus size: 24
9115230 AAAATATAAT
*
9115240 TTTATTATTTTAATAATTTATATA
1 TTTATAATTTTAATAATTTATATA
* *
9115264 TTTATAATCTTTATAAAAAATTATAT-
1 TTTATAA--TTT-TAATAATTTATATA
* *
9115290 TTTATTATTTTAATAATCTATATA
1 TTTATAATTTTAATAATTTATATA
*
9115314 TTTATAATTTTTATCAATTTA
1 TTTATAATTTTAAT-AATTTA
9115335 GAGAGTTAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
23 10 0.18
24 21 0.38
25 5 0.09
26 9 0.16
27 11 0.20
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (24 bp):
TTTATAATTTTAATAATTTATATA
Found at i:9115292 original size:50 final size:50
Alignment explanation
Indices: 9115229--9115327 Score: 164
Period size: 50 Copynumber: 2.0 Consensus size: 50
9115219 TTACTATGAT
*
9115229 AAAAATATAATTTTATTATTTTAATAATTTATATATTTATAATCTTTATA
1 AAAAATATAATTTTATTATTTTAATAATCTATATATTTATAATCTTTATA
*
9115279 AAAAAT-TATATTTTATTATTTTAATAATCTATATATTTATAATTTTTAT
1 AAAAATATA-ATTTTATTATTTTAATAATCTATATATTTATAATCTTTAT
9115328 CAATTTAGAG
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
49 2 0.04
50 44 0.96
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (50 bp):
AAAAATATAATTTTATTATTTTAATAATCTATATATTTATAATCTTTATA
Found at i:9127224 original size:20 final size:20
Alignment explanation
Indices: 9127188--9127240 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 20
9127178 TCTCTCTTTC
*
9127188 TCTTTCTT-TCTTCTCCCCCT
1 TCTTTCTTCT-TTTTCCCCCT
9127208 TCTTTCTTCTTTTT--CCCT
1 TCTTTCTTCTTTTTCCCCCT
9127226 TC-TT-TTCTTTTTCCC
1 TCTTTCTTCTTTTTCCC
9127241 TTCCACCCCC
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 8 0.28
17 2 0.07
18 7 0.24
20 11 0.38
21 1 0.03
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (20 bp):
TCTTTCTTCTTTTTCCCCCT
Found at i:9127233 original size:16 final size:18
Alignment explanation
Indices: 9127204--9127243 Score: 66
Period size: 16 Copynumber: 2.3 Consensus size: 18
9127194 TTTCTTCTCC
9127204 CCCTTCTTTCTTCTTTTT
1 CCCTTCTTTCTTCTTTTT
9127222 CCCTTC-TT-TTCTTTTT
1 CCCTTCTTTCTTCTTTTT
9127238 CCCTTC
1 CCCTTC
9127244 CACCCCCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 14 0.64
17 2 0.09
18 6 0.27
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (18 bp):
CCCTTCTTTCTTCTTTTT
Found at i:9130084 original size:4 final size:4
Alignment explanation
Indices: 9130077--9130121 Score: 90
Period size: 4 Copynumber: 11.2 Consensus size: 4
9130067 TTAAAAAAAA
9130077 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
9130122 TTGGTAGTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:9132285 original size:27 final size:27
Alignment explanation
Indices: 9132238--9132289 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
9132228 ATAATTCAAT
*
9132238 TTCCAATCAATATACAATTTCAATCCA
1 TTCCAATCAATACACAATTTCAATCCA
*
9132265 TTCCAATTCAATACAC-TTTTCAATC
1 TTCCAA-TCAATACACAATTTCAATC
9132290 ATACACATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 14 0.64
28 8 0.36
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (27 bp):
TTCCAATCAATACACAATTTCAATCCA
Found at i:9136362 original size:20 final size:20
Alignment explanation
Indices: 9136337--9136376 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
9136327 AATAGAACAG
9136337 TAAAGAGTTGTTTGATTTTT
1 TAAAGAGTTGTTTGATTTTT
9136357 TAAAGAGTTGTTTGATTTTT
1 TAAAGAGTTGTTTGATTTTT
9136377 CTATTTGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.20, T:0.55
Consensus pattern (20 bp):
TAAAGAGTTGTTTGATTTTT
Found at i:9138082 original size:16 final size:17
Alignment explanation
Indices: 9138061--9138099 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
9138051 GAGTTATTTA
* *
9138061 AAAATAATTAAAAGA-T
1 AAAATAATAAAAAAATT
9138077 AAAATAATAAAAAAATT
1 AAAATAATAAAAAAATT
9138094 AAAATA
1 AAAATA
9138100 TTATCCTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (17 bp):
AAAATAATAAAAAAATT
Found at i:9138773 original size:18 final size:17
Alignment explanation
Indices: 9138731--9138773 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
9138721 AAAATTTTTG
* *
9138731 AAATGAATTATTTTATA
1 AAATAAATTAATTTATA
*
9138748 AAACAAATTAATTTATAA
1 AAATAAATTAATTTAT-A
9138766 AAATAAAT
1 AAATAAAT
9138774 AAATAAATCT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (17 bp):
AAATAAATTAATTTATA
Found at i:9139243 original size:19 final size:19
Alignment explanation
Indices: 9139219--9139256 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
9139209 GTGTGATTAT
9139219 TGTGAATCTTGTATTTGAA
1 TGTGAATCTTGTATTTGAA
9139238 TGTGAATCTTGTATTTGAA
1 TGTGAATCTTGTATTTGAA
9139257 AATTGACATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.21, T:0.47
Consensus pattern (19 bp):
TGTGAATCTTGTATTTGAA
Found at i:9139400 original size:20 final size:20
Alignment explanation
Indices: 9139375--9139412 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
9139365 TATTTGTTAT
9139375 AAATG-TTTAACAAGAATGGA
1 AAATGTTTTAA-AAGAATGGA
9139395 AAATGTTTTAAAAGAATG
1 AAATGTTTTAAAAGAATG
9139413 TTTAATAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.50, C:0.03, G:0.18, T:0.29
Consensus pattern (20 bp):
AAATGTTTTAAAAGAATGGA
Found at i:9139876 original size:24 final size:24
Alignment explanation
Indices: 9139849--9139917 Score: 90
Period size: 23 Copynumber: 2.9 Consensus size: 24
9139839 TTCCATTATT
*
9139849 TATAATTTTTAT-ATTTTTAGAT-
1 TATAATTTTTATAATTTTTAAATA
9139871 TATATATTTTTATGAATTTTTAAATA
1 TATA-ATTTTTAT-AATTTTTAAATA
9139897 T-TAATTTTTATAATTTTTAAA
1 TATAATTTTTATAATTTTTAAA
9139918 AGTTCACGTA
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
22 4 0.10
23 18 0.43
24 8 0.19
25 11 0.26
26 1 0.02
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (24 bp):
TATAATTTTTATAATTTTTAAATA
Found at i:9140643 original size:31 final size:29
Alignment explanation
Indices: 9140608--9140669 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
9140598 TCTTAATATT
* *
9140608 TGTTATTTGTATTTTTATAAAATATTTAATA
1 TGTTATTTGTA-CTTT-GAAAATATTTAATA
*
9140639 TGTTATTTTTACTTTGAAAATATTTAATA
1 TGTTATTTGTACTTTGAAAATATTTAATA
9140668 TG
1 TG
9140670 GTACATGAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 15 0.54
30 3 0.11
31 10 0.36
ACGTcount: A:0.34, C:0.02, G:0.08, T:0.56
Consensus pattern (29 bp):
TGTTATTTGTACTTTGAAAATATTTAATA
Found at i:9143080 original size:46 final size:43
Alignment explanation
Indices: 9142964--9143116 Score: 171
Period size: 46 Copynumber: 3.4 Consensus size: 43
9142954 TACATGTTTG
* * *
9142964 GGTTAAACCTACACAAATCGGATAATAGTGTCCGGTCACCCGTAA
1 GGTTGAACCTACACAAATCGGATAATAGTG-CCGGACA-CCGTTA
9143009 GGTTGAACCTACACAAATCGGATAATAGTGCCTGGACAGCCGTTA
1 GGTTGAACCTACACAAATCGGATAATAGTGCC-GGACA-CCGTTA
** * *
9143054 GGATTGAACCTACACAAATCATATAATAATGCCCGATCACCTGTTA
1 GG-TTGAACCTACACAAATCGGATAATAGTGCCGGA-CACC-GTTA
9143100 GGGTTGAACCTACACAA
1 -GGTTGAACCTACACAA
9143117 CATATAGCCT
Statistics
Matches: 95, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
44 2 0.02
45 44 0.46
46 47 0.49
47 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.23
Consensus pattern (43 bp):
GGTTGAACCTACACAAATCGGATAATAGTGCCGGACACCGTTA
Found at i:9153905 original size:41 final size:43
Alignment explanation
Indices: 9153840--9153923 Score: 111
Period size: 41 Copynumber: 2.0 Consensus size: 43
9153830 TCTTCTAGGG
* *
9153840 TTTTCATAGTTTTAGGTTAGGTTTTC-C-TTTCTTTTTCTTTTTT
1 TTTTCATA-TTTTAGATTAAGTTTTCTCTTTTC-TTTTCTTTTTT
9153883 TTTTCAT-TTTTAGATTAAGTTTTCTCTTTTCTTTTCTTTTT
1 TTTTCATATTTTAGATTAAGTTTTCTCTTTTCTTTTCTTTTT
9153924 AAATTAGATT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
41 15 0.41
42 11 0.30
43 11 0.30
ACGTcount: A:0.11, C:0.12, G:0.08, T:0.69
Consensus pattern (43 bp):
TTTTCATATTTTAGATTAAGTTTTCTCTTTTCTTTTCTTTTTT
Found at i:9153923 original size:30 final size:30
Alignment explanation
Indices: 9153872--9153929 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
9153862 TTTCCTTTCT
* *
9153872 TTTTCTTTTTTTTTTCATTTTTAGATTAAG
1 TTTTCTTTTTCTTTTCATTTTTAAATTAAG
9153902 TTTTCTCTTTTCTTTTC-TTTTTAAATTA
1 TTTTCT-TTTTCTTTTCATTTTTAAATTA
9153930 GATTTTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 16 0.64
31 9 0.36
ACGTcount: A:0.16, C:0.10, G:0.03, T:0.71
Consensus pattern (30 bp):
TTTTCTTTTTCTTTTCATTTTTAAATTAAG
Found at i:9156660 original size:19 final size:18
Alignment explanation
Indices: 9156638--9156681 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
9156628 AATTACAAAA
* *
9156638 AAAAATTCAAATAATTTTT
1 AAAAATTAAAAT-ATTTAT
*
9156657 AAAATTTAAAATATTTAT
1 AAAAATTAAAATATTTAT
9156675 AAAAATT
1 AAAAATT
9156682 TTAATTTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
AAAAATTAAAATATTTAT
Found at i:9156687 original size:25 final size:24
Alignment explanation
Indices: 9156659--9156705 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
9156649 TAATTTTTAA
9156659 AATTTAAAATATTTATAAAAATTTT
1 AATTTAAAAT-TTTATAAAAATTTT
** *
9156684 AATTTTTAATTTTTTAAAAATT
1 AATTTAAAATTTTATAAAAATT
9156706 CTAAAAAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
AATTTAAAATTTTATAAAAATTTT
Found at i:9156741 original size:46 final size:42
Alignment explanation
Indices: 9156652--9156744 Score: 105
Period size: 46 Copynumber: 2.1 Consensus size: 42
9156642 ATTCAAATAA
* * * *
9156652 TTTTTAAAATTTAAAATATTTATAAAAATTTTAATTTTTAAT
1 TTTTTAAAATTTAAAAAATATATAAAAATTATAATTTTAAAT
*
9156694 TTTTTAAAAATTCTAAAAAATATATAAAAAACTTATGATTTTAAAT
1 TTTTT-AAAATT-TAAAAAATATAT-AAAAA-TTATAATTTTAAAT
9156740 TTTTT
1 TTTTT
9156745 CTAAAATAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
42 5 0.12
43 6 0.14
44 10 0.24
45 5 0.12
46 16 0.38
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (42 bp):
TTTTTAAAATTTAAAAAATATATAAAAATTATAATTTTAAAT
Found at i:9158124 original size:23 final size:23
Alignment explanation
Indices: 9158098--9158155 Score: 82
Period size: 23 Copynumber: 2.5 Consensus size: 23
9158088 ATACAACAAA
9158098 TAATAACACAT-AAAATTTGAAAC
1 TAATAACA-ATAAAAATTTGAAAC
*
9158121 TAATAATAATAAAAATTTGAAAC
1 TAATAACAATAAAAATTTGAAAC
*
9158144 TAATAATAATAA
1 TAATAACAATAA
9158156 CAGGTAAAGC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
22 2 0.06
23 31 0.94
ACGTcount: A:0.60, C:0.07, G:0.03, T:0.29
Consensus pattern (23 bp):
TAATAACAATAAAAATTTGAAAC
Found at i:9158477 original size:20 final size:23
Alignment explanation
Indices: 9158455--9158496 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
9158445 ATTAAAAACC
9158455 TTTAAAAAATT-TAT-ATTTACT
1 TTTAAAAAATTATATAATTTACT
*
9158476 TTTTAAAAATTATATAATTTA
1 TTTAAAAAATTATATAATTTA
9158497 TATTTACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
22 3 0.17
23 5 0.28
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
TTTAAAAAATTATATAATTTACT
Found at i:9158502 original size:22 final size:21
Alignment explanation
Indices: 9158459--9158502 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
9158449 AAAACCTTTA
*
9158459 AAAAATTTATATTTACTTTTT
1 AAAAATTTATATTTACTATTT
9158480 AAAAATTATATAATTTA-TATTT
1 AAAAATT-TAT-ATTTACTATTT
9158502 A
1 A
9158503 CTTTCTCATC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 7 0.35
22 8 0.40
23 5 0.25
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (21 bp):
AAAAATTTATATTTACTATTT
Found at i:9182329 original size:2 final size:2
Alignment explanation
Indices: 9182322--9182356 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
9182312 ACTCCTGCTT
9182322 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9182357 TCTTTTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:9182854 original size:7 final size:7
Alignment explanation
Indices: 9182842--9182867 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
9182832 ATATATATAA
9182842 AAAAAAG
1 AAAAAAG
9182849 AAAAAAG
1 AAAAAAG
9182856 AAAAAAG
1 AAAAAAG
9182863 AAAAA
1 AAAAA
9182868 CAAGAAGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:9184834 original size:36 final size:37
Alignment explanation
Indices: 9184789--9184862 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
9184779 GATTACCTAA
9184789 AAATAAAGTTAACT-AACAAATCGATACTTAAACTAT
1 AAATAAAGTTAACTAAACAAATCGATACTTAAACTAT
*
9184825 AAATAAAGTTAACTAAACAAATTGATACTTAAACTAT
1 AAATAAAGTTAACTAAACAAATCGATACTTAAACTAT
9184862 A
1 A
9184863 CTCTTTTTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 14 0.39
37 22 0.61
ACGTcount: A:0.54, C:0.12, G:0.05, T:0.28
Consensus pattern (37 bp):
AAATAAAGTTAACTAAACAAATCGATACTTAAACTAT
Found at i:9191129 original size:40 final size:40
Alignment explanation
Indices: 9191021--9191230 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
9191011 CGGGATTTAA
* * * * *
9191021 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
9191061 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
9191101 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
9191141 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
9191181 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
9191221 CCGGATATAT
1 CCGGATATAT
9191231 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:9199262 original size:40 final size:40
Alignment explanation
Indices: 9199154--9199363 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
9199144 CGGGATTTAA
* * * * *
9199154 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
9199194 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
9199234 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
9199274 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
9199314 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
9199354 CCGGATATAT
1 CCGGATATAT
9199364 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:9205298 original size:40 final size:40
Alignment explanation
Indices: 9205190--9205399 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
9205180 CGGGATTTAA
* * * * *
9205190 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
9205230 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
9205270 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
9205310 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
9205350 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
9205390 CCGGATATAT
1 CCGGATATAT
9205400 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:9207715 original size:18 final size:18
Alignment explanation
Indices: 9207675--9207737 Score: 72
Period size: 18 Copynumber: 3.5 Consensus size: 18
9207665 TATCAATATC
*
9207675 ATTCAGTAACGATCAATT
1 ATTCAGTAACAATCAATT
* * *
9207693 GTTCAGTAACAATTAGTT
1 ATTCAGTAACAATCAATT
* *
9207711 ATTCAGTATCAGTCAATT
1 ATTCAGTAACAATCAATT
9207729 ATTCAGTAA
1 ATTCAGTAA
9207738 TAGTCAGTCA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.37
Consensus pattern (18 bp):
ATTCAGTAACAATCAATT
Found at i:9207742 original size:18 final size:19
Alignment explanation
Indices: 9207675--9207754 Score: 62
Period size: 18 Copynumber: 4.4 Consensus size: 19
9207665 TATCAATATC
9207675 ATTCAGTAA-C-GATCAATT
1 ATTCAGTAATCAG-TCAATT
* * * *
9207693 GTTCAGTAA-CAATTAGTT
1 ATTCAGTAATCAGTCAATT
9207711 ATTCAGT-ATCAGTCAATT
1 ATTCAGTAATCAGTCAATT
* *
9207729 ATTCAGTAAT-AGTCAGTC
1 ATTCAGTAATCAGTCAATT
9207747 ATTCAGTA
1 ATTCAGTA
9207755 CTTTTATTTA
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
17 1 0.02
18 46 0.94
19 2 0.04
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (19 bp):
ATTCAGTAATCAGTCAATT
Found at i:9207751 original size:36 final size:36
Alignment explanation
Indices: 9207673--9207754 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 36
9207663 TTTATCAATA
* *
9207673 TCATTCAGTAACGATCAATTGTTCAGTAACAATTAG
1 TCATTCAGTAACGATCAATTATTCAGTAACAATCAG
* * * *
9207709 TTATTCAGTATC-AGTCAATTATTCAGTAATAGTCAG
1 TCATTCAGTAACGA-TCAATTATTCAGTAACAATCAG
9207745 TCATTCAGTA
1 TCATTCAGTA
9207755 CTTTTATTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
35 1 0.03
36 37 0.97
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (36 bp):
TCATTCAGTAACGATCAATTATTCAGTAACAATCAG
Found at i:9209884 original size:20 final size:20
Alignment explanation
Indices: 9209838--9209885 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
9209828 AGTCTTTTTT
*
9209838 CCTAATTACTCTTAATTAAG
1 CCTAATTACACTTAATTAAG
9209858 -CTAAATT-CACTTAATTAAAG
1 CCT-AATTACACTTAATT-AAG
9209878 CCTAATTA
1 CCTAATTA
9209886 ACCACTCGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
19 10 0.43
20 11 0.48
21 2 0.09
ACGTcount: A:0.40, C:0.19, G:0.04, T:0.38
Consensus pattern (20 bp):
CCTAATTACACTTAATTAAG
Found at i:9212821 original size:26 final size:26
Alignment explanation
Indices: 9212783--9212896 Score: 165
Period size: 26 Copynumber: 4.2 Consensus size: 26
9212773 CATGAAATTC
*
9212783 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
9212809 TTATCATGGAACATTTACTTACCTAACCCA
1 TTATCATGGAACA--T--TTACCTAACCCA
*
9212839 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
9212865 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
9212891 TTATCA
1 TTATCA
9212897 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 8
0.89 0.02 0.09
Matches are distributed among these distances:
26 55 0.67
28 2 0.02
30 25 0.30
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:9212833 original size:30 final size:30
Alignment explanation
Indices: 9212797--9212882 Score: 135
Period size: 30 Copynumber: 3.0 Consensus size: 30
9212787 CATGAAACAT
9212797 TTACCTAACCCATTATCATGGAACATTTAC
1 TTACCTAACCCATTATCATGGAACATTTAC
9212827 TTACCTAACCCATTATCATGGAACA--T--
1 TTACCTAACCCATTATCATGGAACATTTAC
*
9212853 TTACCTAACCTATTATCATGGAACATTTAC
1 TTACCTAACCCATTATCATGGAACATTTAC
9212883 CTAACCTATT
Statistics
Matches: 51, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
26 24 0.47
28 2 0.04
30 25 0.49
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.34
Consensus pattern (30 bp):
TTACCTAACCCATTATCATGGAACATTTAC
Found at i:9215721 original size:42 final size:42
Alignment explanation
Indices: 9215615--9215729 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 42
9215605 TCTGAGACAT
*
9215615 CGTGTAAGACCATGTCTGGGACACAGGCCTTGATTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACACAGGCATTGATT-AGATTTA
*
9215658 CGTATAAGACCATGTCTGGGACATC-GGCATTGTATCT-GATTT-
1 CGTGTAAGACCATGTCTGGGACA-CAGGCATTG-AT-TAGATTTA
* *
9215700 TGTGTAAGACCATGTCTGGGACAAAGGCAT
1 CGTGTAAGACCATGTCTGGGACACAGGCAT
9215730 CTATATTGAA
Statistics
Matches: 63, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
42 26 0.41
43 33 0.52
44 3 0.05
45 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACACAGGCATTGATTAGATTTA
Found at i:9215751 original size:85 final size:84
Alignment explanation
Indices: 9215616--9215776 Score: 195
Period size: 85 Copynumber: 1.9 Consensus size: 84
9215606 CTGAGACATC
* * * *
9215616 GTGTAAGACCATGTCTGGGACACAGGCCTTGATTGAGATTTACGTATAAGACCATGTCTGGGACA
1 GTGTAAGACCATGTCTGGGACAAAGGCCTTGATTGAGATTCACG-ATAAGACCACGTCTAGGA-A
9215681 -TCGGCATTGTATCTGATTTT
64 GTCGGCATTGTATCTGATTTT
9215701 GTGTAAGACCATGTCTGGGACAAAGGCATCTAT-ATTGA-ATTACACG-TAAGACCACGTCTAGG
1 GTGTAAGACCATGTCTGGGACAAAGGC--CT-TGATTGAGATT-CACGATAAGACCACGTCTAGG
*
9215763 AAGTCGGTATTGTA
62 AAGTCGGCATTGTA
9215777 CTTGTTTATG
Statistics
Matches: 66, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
84 1 0.02
85 51 0.77
86 3 0.05
87 10 0.15
88 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (84 bp):
GTGTAAGACCATGTCTGGGACAAAGGCCTTGATTGAGATTCACGATAAGACCACGTCTAGGAAGT
CGGCATTGTATCTGATTTT
Found at i:9216947 original size:14 final size:15
Alignment explanation
Indices: 9216930--9216958 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9216920 TTATATCACG
9216930 AATCA-TATAAAATT
1 AATCATTATAAAATT
9216944 AATCATTATAAAATT
1 AATCATTATAAAATT
9216959 CAGTAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (15 bp):
AATCATTATAAAATT
Found at i:9219254 original size:5 final size:5
Alignment explanation
Indices: 9219244--9219282 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
9219234 TTTCTTTTAT
9219244 TATTA TATTA TATTA TATTA -A-TA TATTA TTATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA -TATTA TATTA
9219283 ATTTCTTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 22 0.71
6 5 0.16
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:9225937 original size:115 final size:115
Alignment explanation
Indices: 9225795--9226023 Score: 404
Period size: 115 Copynumber: 2.0 Consensus size: 115
9225785 TGAAGCTTAG
9225795 TAACCCAAGAAGCACTCCGGTAAATTATAGTTATCAAGTTAATATGTAGTCCTAAGGATAAGATA
1 TAACCCAAGAAGCACTCCGGTAAATTATAGTTATCAAGTTAATATGTAGTCCTAAGGATAAGATA
*
9225860 ATAGAAAGTTCAAATTCCTTATGACTCTACCTTATAGATAGCTTTGAATA
66 ATAGAAAGTTCAAATTCCTTACGACTCTACCTTATAGATAGCTTTGAATA
* ** *
9225910 TAACCCAATAAGCACTTTGGTAAATTATAGTTATCAAGTTAATTTGTAGTCCTAAGGATAAGATA
1 TAACCCAAGAAGCACTCCGGTAAATTATAGTTATCAAGTTAATATGTAGTCCTAAGGATAAGATA
*
9225975 ATAGAAAGTTCAAATTCCTTACGACTCTATCTTATAGATAGCTTTGAAT
66 ATAGAAAGTTCAAATTCCTTACGACTCTACCTTATAGATAGCTTTGAAT
9226024 GTAATTCCAT
Statistics
Matches: 108, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
115 108 1.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (115 bp):
TAACCCAAGAAGCACTCCGGTAAATTATAGTTATCAAGTTAATATGTAGTCCTAAGGATAAGATA
ATAGAAAGTTCAAATTCCTTACGACTCTACCTTATAGATAGCTTTGAATA
Found at i:9227636 original size:29 final size:29
Alignment explanation
Indices: 9227604--9227661 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
9227594 GATTGAGATT
9227604 AAATTTGAGCCATTAGATGTATTTATAAC
1 AAATTTGAGCCATTAGATGTATTTATAAC
9227633 AAATTTGAGCCATTAGATGTATTTATAAC
1 AAATTTGAGCCATTAGATGTATTTATAAC
9227662 TTGGTGATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (29 bp):
AAATTTGAGCCATTAGATGTATTTATAAC
Found at i:9234290 original size:12 final size:12
Alignment explanation
Indices: 9234275--9234305 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
9234265 TTCTCTTTTA
9234275 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
9234287 TTTTTCTTTCTC
1 TTTTTCTTTCCC
9234299 TTTTTCT
1 TTTTTCT
9234306 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:9234406 original size:16 final size:16
Alignment explanation
Indices: 9234385--9234415 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9234375 TTTATTATTT
9234385 TATTAACATAATATAA
1 TATTAACATAATATAA
*
9234401 TATTAATATAATATA
1 TATTAACATAATATA
9234416 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:9234625 original size:21 final size:21
Alignment explanation
Indices: 9234597--9234642 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
9234587 TAAATATTTA
9234597 AATT-ACAAATGTACCAATAC
1 AATTCACAAATGTACCAATAC
9234617 AATTCACAAATGTACCAATAC
1 AATTCACAAATGTACCAATAC
9234638 AATTC
1 AATTC
9234643 TTACACATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.16
21 21 0.84
ACGTcount: A:0.48, C:0.22, G:0.04, T:0.26
Consensus pattern (21 bp):
AATTCACAAATGTACCAATAC
Found at i:9237259 original size:17 final size:18
Alignment explanation
Indices: 9237237--9237270 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
9237227 ACAATGAGTC
*
9237237 TTCAAACAATG-GATCAT
1 TTCAAAAAATGTGATCAT
9237254 TTCAAAAAATGTGATCA
1 TTCAAAAAATGTGATCA
9237271 CGTGAATCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.29
Consensus pattern (18 bp):
TTCAAAAAATGTGATCAT
Found at i:9238466 original size:26 final size:26
Alignment explanation
Indices: 9238437--9238490 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
9238427 ACGAGCAAAA
9238437 AAATATGAGTTATAACTGAATTTGTT
1 AAATATGAGTTATAACTGAATTTGTT
9238463 AAATATGAGTTATAACTGAATTTGTT
1 AAATATGAGTTATAACTGAATTTGTT
9238489 AA
1 AA
9238491 CTTGAAAGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.41, C:0.04, G:0.15, T:0.41
Consensus pattern (26 bp):
AAATATGAGTTATAACTGAATTTGTT
Found at i:9241743 original size:21 final size:21
Alignment explanation
Indices: 9241717--9241757 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9241707 ATCTGCTCAA
* *
9241717 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
9241738 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
9241758 TCGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:9260420 original size:2 final size:2
Alignment explanation
Indices: 9260413--9260438 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
9260403 CACTAAATTC
9260413 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
9260439 TATCAGAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9266094 original size:21 final size:22
Alignment explanation
Indices: 9266056--9266105 Score: 84
Period size: 21 Copynumber: 2.3 Consensus size: 22
9266046 AGAAAGTGGA
*
9266056 ATATGCATGATAAAAATAATAG
1 ATATGAATGATAAAAATAATAG
9266078 ATATGAATGAT-AAAATAATAG
1 ATATGAATGATAAAAATAATAG
9266099 ATATGAA
1 ATATGAA
9266106 AGTATCAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 17 0.63
22 10 0.37
ACGTcount: A:0.56, C:0.02, G:0.14, T:0.28
Consensus pattern (22 bp):
ATATGAATGATAAAAATAATAG
Found at i:9266116 original size:24 final size:22
Alignment explanation
Indices: 9266064--9266116 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
9266054 GAATATGCAT
*
9266064 GATAAAAATAATAGATATGAAT
1 GATAAAAATAATAGATATGAAA
9266086 GAT-AAAATAATAGATATGAAA
1 GATAAAAATAATAGATATGAAA
9266107 GTATCAAAAA
1 G-AT-AAAAA
9266117 AAAGGGAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 18 0.67
22 5 0.19
24 4 0.15
ACGTcount: A:0.60, C:0.02, G:0.13, T:0.25
Consensus pattern (22 bp):
GATAAAAATAATAGATATGAAA
Found at i:9267307 original size:22 final size:23
Alignment explanation
Indices: 9267273--9267320 Score: 55
Period size: 22 Copynumber: 2.1 Consensus size: 23
9267263 AAAGGTAACC
9267273 TTTTTTCAT-TCTTGATTTTTCGTA
1 TTTTTTCATCT-TTG-TTTTTCGTA
*
9267297 TTTTTTC-TCTTTGTTTTTTGTA
1 TTTTTTCATCTTTGTTTTTCGTA
9267319 TT
1 TT
9267321 CAATTCTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 10 0.45
23 4 0.18
24 8 0.36
ACGTcount: A:0.08, C:0.10, G:0.08, T:0.73
Consensus pattern (23 bp):
TTTTTTCATCTTTGTTTTTCGTA
Found at i:9268435 original size:3 final size:3
Alignment explanation
Indices: 9268427--9268466 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
9268417 GACCTACAAT
9268427 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
9268467 ACAAGAAACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:9275180 original size:2 final size:2
Alignment explanation
Indices: 9275173--9275210 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
9275163 TCTTGGAGCA
* *
9275173 AT AT AT AT AT TT AT GT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9275211 TTATTTGCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (2 bp):
AT
Found at i:9277009 original size:23 final size:24
Alignment explanation
Indices: 9276983--9277035 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
9276973 CTGAATGTCT
*
9276983 TTTTTTA-TTATTAATTTAATTAA
1 TTTTTTATTTATTAATTTAAATAA
* * *
9277006 TTTTTAATTTTTTAATTTAAATAT
1 TTTTTTATTTATTAATTTAAATAA
9277030 TTTTTT
1 TTTTTT
9277036 TCACATTGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (24 bp):
TTTTTTATTTATTAATTTAAATAA
Found at i:9286383 original size:23 final size:23
Alignment explanation
Indices: 9286332--9286437 Score: 96
Period size: 22 Copynumber: 4.6 Consensus size: 23
9286322 GGTTTTTGGT
*
9286332 TTTTTTGGAGAAGGATTGTTCTTTG
1 TTTTTTGGAGAAGG-TT-TTTTTTG
*
9286357 --TTTTGGAGGAGGTTTTTTTTG
1 TTTTTTGGAGAAGGTTTTTTTTG
9286378 TTTTTTGGAG--GTGTTTTTTTTG
1 TTTTTTGGAGAAG-GTTTTTTTTG
*
9286400 TTTTTTGGAAAGAAGGTTATTTTTG
1 TTTTTTGG--AGAAGGTTTTTTTTG
*
9286425 TTTCTTGGA-AAGG
1 TTTTTTGGAGAAGG
9286438 CTAGTTTTTG
Statistics
Matches: 70, Mismatches: 4, Indels: 17
0.77 0.04 0.19
Matches are distributed among these distances:
21 7 0.10
22 24 0.34
23 20 0.29
24 2 0.03
25 16 0.23
26 1 0.01
ACGTcount: A:0.15, C:0.02, G:0.28, T:0.55
Consensus pattern (23 bp):
TTTTTTGGAGAAGGTTTTTTTTG
Found at i:9286393 original size:22 final size:23
Alignment explanation
Indices: 9286332--9286433 Score: 93
Period size: 23 Copynumber: 4.4 Consensus size: 23
9286322 GGTTTTTGGT
* *
9286332 TTTTTTGGAGAAGGATTGTTCTTTG
1 TTTTTTGGAGGAGG-TT-TTTTTTG
9286357 --TTTTGGAGGAGGTTTTTTTTG
1 TTTTTTGGAGGAGGTTTTTTTTG
*
9286378 TTTTTTGGAGG-TGTTTTTTTTG
1 TTTTTTGGAGGAGGTTTTTTTTG
* *
9286400 TTTTTTGGAAAGAAGGTTATTTTTG
1 TTTTTTGG--AGGAGGTTTTTTTTG
*
9286425 TTTCTTGGA
1 TTTTTTGGA
9286434 AAGGCTAGTT
Statistics
Matches: 65, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
21 6 0.09
22 20 0.31
23 21 0.32
24 2 0.03
25 16 0.25
ACGTcount: A:0.14, C:0.02, G:0.27, T:0.57
Consensus pattern (23 bp):
TTTTTTGGAGGAGGTTTTTTTTG
Found at i:9286422 original size:25 final size:24
Alignment explanation
Indices: 9286357--9286436 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 24
9286347 TTGTTCTTTG
*
9286357 TTTTGG-AGGAGGTTTTTTTTGTT
1 TTTTGGAAAGAGGTTTTTTTTGTT
9286380 TTTTGG--AG-GTGTTTTTTTTGTT
1 TTTTGGAAAGAG-GTTTTTTTTGTT
*
9286402 TTTTGGAAAGAAGGTTATTTTTGTT
1 TTTTGGAAAG-AGGTTTTTTTTGTT
*
9286427 TCTTGGAAAG
1 TTTTGGAAAG
9286437 GCTAGTTTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
21 1 0.02
22 19 0.39
23 6 0.12
24 2 0.04
25 20 0.41
26 1 0.02
ACGTcount: A:0.15, C:0.01, G:0.28, T:0.56
Consensus pattern (24 bp):
TTTTGGAAAGAGGTTTTTTTTGTT
Found at i:9286749 original size:3 final size:3
Alignment explanation
Indices: 9286735--9286820 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
9286725 GAGCTTCGTT
* *
9286735 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
9286779 TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
9286821 ATATGCCCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 7 0.10
3 52 0.76
4 7 0.10
5 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:9286773 original size:27 final size:27
Alignment explanation
Indices: 9286734--9286820 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
9286724 AGAGCTTCGT
9286734 TTTATTATT-TTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTTTTACTATTA
*
9286761 TTTATATTATTATTATTATTT-C--TCA
1 TTTATATTATTATTATT-TTTACTATTA
* * *
9286786 TGTATA-TATTATTATTTATATTATTA
1 TTTATATTATTATTATTTTTACTATTA
9286812 -TTATATTAT
1 TTTATATTAT
9286821 ATATGCCCTC
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 9 0.19
27 13 0.27
28 3 0.06
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (27 bp):
TTTATATTATTATTATTTTTACTATTA
Found at i:9286795 original size:21 final size:18
Alignment explanation
Indices: 9286735--9286824 Score: 92
Period size: 18 Copynumber: 4.7 Consensus size: 18
9286725 GAGCTTCGTT
*
9286735 TTATTATTTTATTATTTTTA
1 TTATTA-TTTA-TATTATTA
*
9286755 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
*
9286773 TTATTATTTCTCATGTATATA
1 TTATTATTTAT-AT-TAT-TA
9286794 TTATTATTTATATTATTA
1 TTATTATTTATATTATTA
9286812 TTA-TATTATATAT
1 TTATTATT-TATAT
9286825 GCCCTCTCCA
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
17 4 0.07
18 26 0.43
19 9 0.15
20 10 0.16
21 12 0.20
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:9291541 original size:15 final size:16
Alignment explanation
Indices: 9291521--9291556 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
9291511 TTTAAGACCA
9291521 AAAAAAG-AAAACAAG
1 AAAAAAGAAAAACAAG
*
9291536 AAAAAAGAAAAAGAAG
1 AAAAAAGAAAAACAAG
9291552 AAAAA
1 AAAAA
9291557 GGAGAGGCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.83, C:0.03, G:0.14, T:0.00
Consensus pattern (16 bp):
AAAAAAGAAAAACAAG
Found at i:9291541 original size:16 final size:17
Alignment explanation
Indices: 9291520--9291556 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
9291510 CTTTAAGACC
9291520 AAAAAAAG-AAAACAAG
1 AAAAAAAGAAAAACAAG
*
9291536 -AAAAAAGAAAAAGAAG
1 AAAAAAAGAAAAACAAG
9291552 AAAAA
1 AAAAA
9291557 GGAGAGGCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 7 0.39
16 7 0.39
17 4 0.22
ACGTcount: A:0.84, C:0.03, G:0.14, T:0.00
Consensus pattern (17 bp):
AAAAAAAGAAAAACAAG
Found at i:9292775 original size:66 final size:66
Alignment explanation
Indices: 9292675--9292801 Score: 218
Period size: 66 Copynumber: 1.9 Consensus size: 66
9292665 CATTCATATA
*
9292675 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACACATT
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
9292740 C
66 C
* * *
9292741 ATAACATATCTGGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACA
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
9292802 TAAGCATAGA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 57 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (66 bp):
ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
C
Found at i:9292929 original size:45 final size:44
Alignment explanation
Indices: 9292869--9293583 Score: 392
Period size: 45 Copynumber: 16.3 Consensus size: 44
9292859 ACAAGCCTTA
9292869 AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTT
1 AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTT
* * * ** *
9292913 AACTCCCTAAGCAGTAGGGAAATA-GATCGAAGA-CGA-AGGGTCTT
1 AAC-CCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACA-GATCTT
* * * * *
9292957 AAACCCCTAATCGGTAGGGTAACAGACCG-A-A-TTGCAGATCTT
1 -AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTT
* * * * * **
9292999 ATCCCCCTAAGCAGTAGGGAAACA-GATCGAAGA-TGA-TGGCCTTT
1 A-ACCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGATC-TT
** * *
9293043 AACCCCCTAAGCAGTAGGGTAACAATCCG-A-ATTTACA-AGCCTT
1 AA-CCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGA-TCTT
* *
9293086 AAACCCCTAAGCAGTAGGATAACAGACTGAAGATTTACAGATCTT
1 -AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTT
* * * * * * **
9293131 AACCCCCTAAGCAGTCGGGAAACA-GATCAAAGA-TGA-TGGGCTTT
1 AA-CCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGATC-TT
* * *
9293175 AACCCCTAAGCAGTAGGGTAACAAG-TCG-A-ATTTACAAACCTT
1 AACCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGATCTT
9293217 AAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTT
1 -AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTT
* * * * * **
9293262 AACCCCTTAAGCAGTAGGGAAACA-GATCAAAGA-TGA-TGGGCTTT
1 AACCCC-TAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGATC-TT
* * *
9293306 AACCCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACA-AGCCTT
1 AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGA-TCTT
* *
9293348 AAACCCCTAAGTAGTAGGGTAAGAGGCTGAAGATTTACAGATCTT
1 -AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTT
* * * * * * * **
9293393 AACCCCCTAAGCAGTAGGGAAACA-GATAAAAAAATGA-TGGGCTTT
1 AA-CCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGATC-TT
* * * *
9293438 AACCCCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACAAACCTT
1 AA-CCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTT
* *
9293481 AAACCCCTAAGCAGTAGGGTAATAGGCTGAAGATTTACAAATCTT
1 -AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTT
* * *
9293526 AACCCCCTAACCAGTAGGGTAACAGGTTG-A-ATTTACAAATCTT
1 AA-CCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTT
9293569 AACCCCTTAAGCAGT
1 AACCCC-TAAGCAGT
9293584 TGGGAAATAG
Statistics
Matches: 508, Mismatches: 112, Indels: 103
0.70 0.15 0.14
Matches are distributed among these distances:
41 3 0.01
42 40 0.08
43 175 0.34
44 105 0.21
45 182 0.36
46 3 0.01
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (44 bp):
AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTT
Found at i:9293109 original size:43 final size:43
Alignment explanation
Indices: 9292853--9293583 Score: 273
Period size: 43 Copynumber: 16.7 Consensus size: 43
9292843 TAGAATCAGT
* ** *
9292853 GAATTCACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCT
1 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAATCC
* * *
9292896 GAAGATTTAC-AGATCTT-AACTCCCTAAGCAGTAGGGAAATAGAT-C
1 G-A-ATTTACAAG-CCTTAAAC-CCCTAAGCAGTAGGGTAACA-ATCC
* * * *
9292941 GAA--GACGAAGGGTCTTAAACCCCTAATCGGTAGGGTAACAGA-CC
1 GAATTTAC-AA--GCCTTAAACCCCTAAGCAGTAGGGTAACA-ATCC
* * ** *
9292985 GAA-TTGC-AGATCTTATCCCCCTAAGCAGTAGGGAAACAGAT-C
1 GAATTTACAAG-CCTTAAACCCCTAAGCAGTAGGGTAACA-ATCC
* * ** *
9293027 GAAGATGA-TGGCCTTTAACCCCCTAAGCAGTAGGGTAACAATCC
1 GAA-TTTACAAGCC-TTAAACCCCTAAGCAGTAGGGTAACAATCC
* *
9293071 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGATAACAGA-CT
1 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACA-ATCC
* * * *
9293114 GAAGATTTAC-AGATCTTAACCCCCTAAGCAGTCGGGAAACAGAT-C
1 G-A-ATTTACAAG-CCTTAAACCCCTAAGCAGTAGGGTAACA-ATCC
* * * ** * *
9293159 AAAGATGA-TGGGCTTTAACCCCTAAGCAGTAGGGTAACAAGT-C
1 GAA-TTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAA-TCC
* ** *
9293202 GAATTTACAAACCTTAAACCCCTAAGCAGTAGGGTAACAGGCT
1 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAATCC
* *
9293245 GAAGATTTAC-AGATCTT-AACCCCTTAAGCAGTAGGGAAACAGAT-C
1 G-A-ATTTACAAG-CCTTAAACCCC-TAAGCAGTAGGGTAACA-ATCC
* * * ** * * *
9293290 AAAGATGA-TGGGCTTTAACCCCTAAGCAGTAGGGTAACAAGCC
1 GAA-TTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAATCC
* * ** *
9293333 GAATTTACAAGCCTTAAACCCCTAAGTAGTAGGGTAAGAGGCT
1 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAATCC
* * * **
9293376 GAAGATTTAC-AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATAAA
1 G-A-ATTTACAAG-CCTTAAACCCCTAAGCAGTAGGGTAACA-AT-CC
* * * *** * * *
9293423 AAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCC
1 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAATCC
* * ** *
9293466 GAATTTACAAACCTTAAACCCCTAAGCAGTAGGGTAATAGGCT
1 GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAATCC
** * * * *
9293509 GAAGATTTACAAATCTTAACCCCCTAACCAGTAGGGTAACAGGT-T
1 G-A-ATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACA-ATCC
**
9293554 GAATTTACAAATCTT-AACCCCTTAAGCAGT
1 GAATTTACAAGCCTTAAACCCC-TAAGCAGT
9293584 TGGGAAATAG
Statistics
Matches: 517, Mismatches: 121, Indels: 100
0.70 0.16 0.14
Matches are distributed among these distances:
41 3 0.01
42 40 0.08
43 193 0.37
44 98 0.19
45 180 0.35
46 3 0.01
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (43 bp):
GAATTTACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAATCC
Found at i:9293184 original size:88 final size:86
Alignment explanation
Indices: 9293087--9293653 Score: 332
Period size: 88 Copynumber: 6.5 Consensus size: 86
9293077 ACAAGCCTTA
* * *
9293087 AACCCCTAAGCAGTAGGATAACAGACTGAAGATTTACAGATCTTAACCCCCTAAGCAGTCGGGAA
1 AACCCCTAAGCAGTAGGGTAACAGACTG-A-ATTTACAAATCTTAACCCCCTAAGCAGTAGGGAA
*
9293152 ACAGATCAAAGATGATGGGCTTT
64 ACAGATCGAAGATGATGGGCTTT
* * * *
9293175 AACCCCTAAGCAGTAGGGTAACA-AGTCGAATTTACAAACCTTAAACCCCTAAGCAGTAGGGTAA
1 AACCCCTAAGCAGTAGGGTAACAGACT-GAATTTACAAATCTTAACCCCCTAAGCAGTAGGGAAA
* * ** *
9293239 CAG-GCTGAAGAT-TTACAGATCTT
65 CAGATC-GAAGATGAT-GGGCT-TT
* * * *
9293262 AACCCCTTAAGCAGTAGGGAAACAGA-TCAA---AGATGATGGGCTTTAA-CCCCTAAGCAGTAG
1 AACCCC-TAAGCAGTAGGGTAACAGACTGAATTTACA-AAT---C-TTAACCCCCTAAGCAGTAG
* * * * ** * *
9293322 GGTAACA-AGCCGAA-TTTACAAGCCTTA
60 GGAAACAGA-TCGAAGATGA-TGGGCTTT
* * * *
9293349 AACCCCTAAGTAGTAGGGTAAGAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAA
1 AACCCCTAAGCAGTAGGGTAACAGACTG-A-ATTTACAAATCTTAACCCCCTAAGCAGTAGGGAA
** *
9293414 ACAGATAAAAAAATGATGGGCTTT
64 ACAGAT-CGAAGATGATGGGCTTT
* * * *
9293438 AACCCCCTAAGCAGTAGGGTAACA-AGCCGAATTTACAAACCTTAAACCCCTAAGCAGTAGGGTA
1 AA-CCCCTAAGCAGTAGGGTAACAGA-CTGAATTTACAAATCTTAACCCCCTAAGCAGTAGGGAA
* * * ****
9293502 ATAG-GCTGAAGAT-TTACAAATCTT
64 ACAGATC-GAAGATGAT-GGGCT-TT
* ** * *
9293526 AACCCCCTAACCAGTAGGGTAACAGGTTGAATTTACAAATCTTAACCCCTTAAGCAGTTGGGAAA
1 AA-CCCCTAAGCAGTAGGGTAACAGACTGAATTTACAAATCTTAACCCCCTAAGCAGTAGGGAAA
* *
9293591 TAGATCGAAGATGATGGGCCTTA
65 CAGATCGAAGATGATGGG-CTTT
** * *
9293614 AACCCCTAAATAGTAGGGTAACAGGCTGGAAATTACAAAT
1 AACCCCTAAGCAGTAGGGTAACAGACT-GAATTTACAAAT
9293654 TTCTTTTTCC
Statistics
Matches: 363, Mismatches: 81, Indels: 70
0.71 0.16 0.14
Matches are distributed among these distances:
84 2 0.01
85 3 0.01
86 56 0.15
87 53 0.15
88 201 0.55
89 20 0.06
90 23 0.06
91 3 0.01
92 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (86 bp):
AACCCCTAAGCAGTAGGGTAACAGACTGAATTTACAAATCTTAACCCCCTAAGCAGTAGGGAAAC
AGATCGAAGATGATGGGCTTT
Found at i:9293233 original size:131 final size:132
Alignment explanation
Indices: 9292954--9293550 Score: 934
Period size: 131 Copynumber: 4.6 Consensus size: 132
9292944 GACGAAGGGT
* * * * * *
9292954 CTTAAACCCCTAATCGGTAGGGTAACAGACCG-A-A-TTGCAGATCTTATCCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
* * *
9293016 GGAAACAGATCGAAGATGATGGCCTTTAACCCCCTAAGCAGTAGGGTAACAATCCGAATTTACAA
66 GGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
*
9293081 GC
131 AC
* * *
9293083 CTTAAACCCCTAAGCAGTAGGATAACAGACTGAAGATTTACAGATCTTAACCCCCTAAGCAGTCG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
*
9293148 GGAAACAGATCAAAGATGATGGGCTTTAA-CCCCTAAGCAGTAGGGTAACAAGTCGAATTTACAA
66 GGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
9293212 AC
131 AC
*
9293214 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCTTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
9293279 GGAAACAGATCAAAGATGATGGGCTTTAA-CCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
66 GGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
*
9293343 GC
131 AC
* *
9293345 CTTAAACCCCTAAGTAGTAGGGTAAGAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
* *
9293410 GGAAACAGATAAAAAAATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
66 GGAAACAGAT-CAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
9293475 AAC
130 AAC
* * *
9293478 CTTAAACCCCTAAGCAGTAGGGTAATAGGCTGAAGATTTACAAATCTTAACCCCCTAACCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
*
9293543 GGTAACAG
66 GGAAACAG
9293551 GTTGAATTTA
Statistics
Matches: 434, Mismatches: 29, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
129 28 0.06
130 1 0.00
131 232 0.53
132 69 0.16
133 104 0.24
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (132 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAG
GGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAA
AC
Found at i:9293381 original size:86 final size:86
Alignment explanation
Indices: 9292869--9293366 Score: 356
Period size: 86 Copynumber: 5.7 Consensus size: 86
9292859 ACAAGCCTTA
* *
9292869 AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTT-AACTCCCTAAGCAGTAGGGA
1 AACCCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACAGATCTTAAAC-CCCTAAGCAGTAGGGA
* * * *
9292933 AATAGATCGAAGACGAAGGGTCTTA
63 AACAGATCGAAGATGATGGG-CTTT
* * * **
9292958 AACCCCTAATCGGTAGGGTAAC-AGACCGAA-TTGCAGATCTTATCCCCCTAAGCAGTAGGGAAA
1 AACCCCTAAGCAGTAGGGTAACAAG-CCGAATTTACAGATCTTAAACCCCTAAGCAGTAGGGAAA
*
9293021 CAGATCGAAGATGATGGCCTTT
65 CAGATCGAAGATGATGGGCTTT
* *
9293043 AACCCCCTAAGCAGTAGGGTAACAATCCGAATTTACA-AGCCTTAAACCCCTAAGCAGTA-GGAT
1 AA-CCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGA-TCTTAAACCCCTAAGCAGTAGGGA-
* ** *
9293106 AACAGA-CTGAAGAT-TTACAGATCTT
63 AACAGATC-GAAGATGAT-GGGCT-TT
* * * * * * * ** * *
9293131 AACCCCCTAAGCAGTCGGGAAAC-AGATCAAAGATGA-TGGGCTTTAACCCCTAAGCAGTAGGGT
1 AA-CCCCTAAGCAGTAGGGTAACAAG-CCGAA-TTTACAGATCTTAAACCCCTAAGCAGTAGGGA
* * **** *
9293194 AACA-AGTCGAA-TTTACAAACCTTA
63 AACAGA-TCGAAGATGA-TGGGCTTT
* *
9293218 AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTT-AACCCCTTAAGCAGTAGGGA
1 AACCCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACAGATCTTAAACCCC-TAAGCAGTAGGGA
*
9293282 AACAGATCAAAGATGATGGGCTTT
63 AACAGATCGAAGATGATGGGCTTT
* *
9293306 AACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA-AGCCTTAAACCCCTAAGTAGTAGGG
1 AACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGA-TCTTAAACCCCTAAGCAGTAGGG
9293367 TAAGAGGCTG
Statistics
Matches: 315, Mismatches: 67, Indels: 57
0.72 0.15 0.13
Matches are distributed among these distances:
85 6 0.02
86 110 0.35
87 60 0.19
88 109 0.35
89 30 0.10
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (86 bp):
AACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGATCTTAAACCCCTAAGCAGTAGGGAAAC
AGATCGAAGATGATGGGCTTT
Found at i:9293748 original size:68 final size:68
Alignment explanation
Indices: 9293670--9293853 Score: 262
Period size: 68 Copynumber: 2.7 Consensus size: 68
9293660 TTCCCTGAAG
* * * * * *
9293670 TGGCACTGGAGCGGCTAAAAGCCATAGCAGATCTCCTTGAAGTTTCAG-AGGATCTTTTCTTCCT
1 TGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCA-AACCTCTTCTTCCA
9293734 GAAA
65 GAAA
* *
9293738 TGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGCAAACCTCTTCTTCCAG
1 TGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCAAACCTCTTCTTCCAG
9293803 AAA
66 AAA
* *
9293806 TGGCATTGGAGAGGCTAAAAGCCACAGTAGATCTCCTTGAAGTTTCAG
1 TGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
9293854 TGGAAGAAGA
Statistics
Matches: 103, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
68 102 0.99
69 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (68 bp):
TGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCAAACCTCTTCTTCCAG
AAA
Found at i:9294013 original size:44 final size:44
Alignment explanation
Indices: 9293965--9294605 Score: 620
Period size: 44 Copynumber: 14.6 Consensus size: 44
9293955 GATTTCAGCA
9293965 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
* * *
9294009 TGGCATCCCCGTGTTTATAGGGAACAAGTTGAAAACAACAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
* * * * * *
9294053 TGGCATCCCTGTGCTTATAGGAAACAAATCT-AAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGT-TGAAAACATCAGATT
* * * * * * **
9294097 TGACATTCCTGTGCTTACAGTGAA-ACAGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAACA-AGTTGAAA-ACATCAG-ATT
9294141 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
*
9294185 TGGCATCCCTGTGCTTATAGGAAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
9294229 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
* * * * ** *
9294273 TGGCATCCCTGTGCTTATAGGGAAC-GGATCGAAGATAGGAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAACATCAGATT
* * * * * * **
9294317 TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ACATCAG-ATT
*
9294361 TGGTATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
* *
9294405 TGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
* * * * * *
9294449 TGGCATCCCTGTGCTTATAGGGAAC-GGATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAACATCAGATT
* * * * ** * * **
9294493 TGACATTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAACATCAG-ATT
* *
9294537 TGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
9294581 TGGCATCCCTGTGCTTATAGGGAAC
1 TGGCATCCCTGTGCTTATAGGGAAC
9294606 GGATCGAAGA
Statistics
Matches: 489, Mismatches: 88, Indels: 40
0.79 0.14 0.06
Matches are distributed among these distances:
42 3 0.01
43 23 0.05
44 434 0.89
45 26 0.05
46 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (44 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
Found at i:9294205 original size:176 final size:175
Alignment explanation
Indices: 9293907--9294664 Score: 794
Period size: 176 Copynumber: 4.3 Consensus size: 175
9293897 GGAGCAGACC
* * * ** *
9293907 GAAGATAGCAGATTTGATATTCCTGTGCTTACAGTGAAGCAGATCCAAGATTTCAG-CATGGCAT
1 GAAGATAGCAGATTTGACATTCCTGTGCTTACAGTGAAACAGATCAAAGATAGCAGAC-TGACAT
* * *
9293971 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAG-ATTTGGCATCCCCGTGTTTATAGGGAACA
65 CCCTGTGCTTACAGGGAACAAGTTGAAAACATCAGCA--TGGCATCCCTGTGCTTATAGGGAACA
* *
9294035 AGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGAAACAAATCT
128 AGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAAAT-T
* ** *
9294084 -AAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAACAGATCAAAGATTTCAG-CATGGCAT
1 GAAGATAGCAGATTTGACATTCCTGTGCTTACAGTGAAACAGATCAAAGATAGCAGAC-TGACAT
* *
9294147 CCCTGTGCTTATAGGGAACAAGTTGAAAACATCAG-ATTTGGCATCCCTGTGCTTATAGGAAACA
65 CCCTGTGCTTACAGGGAACAAGTTGAAAACATCAGCA--TGGCATCCCTGTGCTTATAGGGAACA
*
9294211 AGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAAGTT
128 AGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATT
* * * * * * * * * *
9294259 GAAAACATCAGATTTGGCATCCCTGTGCTTATAG-GGAACGGATCGAAGATAGGAGATCTGACAT
1 GAAGATAGCAGATTTGACATTCCTGTGCTTACAGTGAAACAGATCAAAGATAGCAGA-CTGACAT
* * * * ** *
9294323 TCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCATGGTATCCCTGTGCTTATAGGGAACA
65 CCCTGTGCTTACAGGGAA-CAAGTTGAAA-ACATCAGCATGGCATCCCTGTGCTTATAGGGAACA
* *
9294387 AGTTGAAAACATCAGATTTGACATCCCTGTGCTTATAGGGAACAAGTT
128 AGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATT
* * * * * * * * *
9294435 GAAAACAACAGATTTGGCATCCCTGTGCTTATAG-GGAACGGATCGAAGATAGCAGATCTGACAT
1 GAAGATAGCAGATTTGACATTCCTGTGCTTACAGTGAAACAGATCAAAGATAGCAGA-CTGACAT
* * ** * * ** *
9294499 TCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAGCATGACATCCCTGTGCTTATAGGGAACAA
65 CCCTGTGCTTACAGGGAACAAG-TTGAAAACATCAGCATGGCATCCCTGTGCTTATAGGGAACAA
* ** *
9294564 GTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACGGATC
129 GTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATT
* * *
9294611 GAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATAGC
1 GAAGATAGCAGATTTGACATTCCTGTGCTTACAGTGAAACAGATCAAAGATAGC
9294665 GGATATCGCC
Statistics
Matches: 511, Mismatches: 61, Indels: 18
0.87 0.10 0.03
Matches are distributed among these distances:
175 16 0.03
176 470 0.92
177 24 0.05
178 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (175 bp):
GAAGATAGCAGATTTGACATTCCTGTGCTTACAGTGAAACAGATCAAAGATAGCAGACTGACATC
CCTGTGCTTACAGGGAACAAGTTGAAAACATCAGCATGGCATCCCTGTGCTTATAGGGAACAAGT
TGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATT
Found at i:9294310 original size:220 final size:220
Alignment explanation
Indices: 9293965--9294473 Score: 901
Period size: 220 Copynumber: 2.3 Consensus size: 220
9293955 GATTTCAGCA
* *
9293965 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCCGTGTTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
*
9294030 GAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGAAACAAATCTAAGATAGCAGA
66 GAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGAAACAAATCGAAGATAGCAGA
9294095 TCTGACATTCCTGTGCTTACAGTGAAACAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATA
131 TCTGACATTCCTGTGCTTACAGTGAAACAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATA
9294160 GGGAACAAGTTGAAAACATCAGATT
196 GGGAACAAGTTGAAAACATCAGATT
*
9294185 TGGCATCCCTGTGCTTATAGGAAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
* * ** *
9294250 GAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACGGATCGAAGATAGGAGA
66 GAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGAAACAAATCGAAGATAGCAGA
* *
9294315 TCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGTATCCCTGTGCTTATA
131 TCTGACATTCCTGTGCTTACAGTGAAACAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATA
9294380 GGGAACAAGTTGAAAACATCAGATT
196 GGGAACAAGTTGAAAACATCAGATT
* *
9294405 TGACATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
9294470 GAAC
66 GAAC
9294474 GGATCGAAGA
Statistics
Matches: 275, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
220 275 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (220 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
GAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGAAACAAATCGAAGATAGCAGA
TCTGACATTCCTGTGCTTACAGTGAAACAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATA
GGGAACAAGTTGAAAACATCAGATT
Found at i:9294550 original size:220 final size:218
Alignment explanation
Indices: 9293968--9294553 Score: 854
Period size: 220 Copynumber: 2.7 Consensus size: 218
9293958 TTCAGCATGG
* *
9293968 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCCGTGTTTATAGGGAA
1 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAA
* * *
9294033 CAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGAAACAAATCTAAGATAGCAGATCT
66 CAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGG-AAGAGATCGAAGATAGCAGA-CT
9294098 GACATTCCTGTGCTTACAGTGAAACAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGG
129 GACATTCCTGTGCTTACAGTGAAACAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGG
*
9294163 AACAAGTTGAAAACATCAGATTTGG
194 AACAAGTTGAAAACATCAGATTTGA
*
9294188 CATCCCTGTGCTTATAGGAAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAA
* *
9294253 CAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACG-GATCGAAGATAGGAGATC
66 CAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATA-GGAA-GAGATCGAAGATAGCAGA-C
* *
9294317 TGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGTATCCCTGTGCTTATAGG
128 TGACATTCCTGTGCTTACAGTGAAACAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGG
9294382 GAACAAGTTGAAAACATCAGATTTGA
193 GAACAAGTTGAAAACATCAGATTTGA
*
9294408 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * * * * * * * **
9294473 C-GGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAG-C
66 CAAG-TTGAAAACAACAGATTTGGCATCCCTGTGCTTATAG-GAAG-AGATCGAAGATAGCAGAC
*
9294536 ATGACATCCCTGTGCTTA
128 -TGACATTCCTGTGCTTA
9294554 TAGGGAACAA
Statistics
Matches: 333, Mismatches: 26, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
219 4 0.01
220 315 0.95
221 14 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (218 bp):
CATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAA
CAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGAAGAGATCGAAGATAGCAGACTGA
CATTCCTGTGCTTACAGTGAAACAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAA
CAAGTTGAAAACATCAGATTTGA
Found at i:9294636 original size:44 final size:44
Alignment explanation
Indices: 9293906--9294664 Score: 337
Period size: 44 Copynumber: 17.2 Consensus size: 44
9293896 AGGAGCAGAC
* * * * * *
9293906 CGAAGATAGCAGATTTGATATTCCTGTGCTTACAGTGAAGCAGAT
1 CGAAGATAGCAGATCTGACATCCCTGTGCTTATAGGGAA-CGGAT
* ** * *
9293951 CCAAGATTTCAG--CATGGCATCCCTGTGCTTATAGGGAAC-AAGT
1 CGAAGATAGCAGATC-TGACATCCCTGTGCTTATAGGGAACGGA-T
* * * * * * * * *
9293994 TGAAAACATCAGATTTGGCATCCCCGTGTTTATAGGGAAC-AAGT
1 CGAAGATAGCAGATCTGACATCCCTGTGCTTATAGGGAACGGA-T
* * * * * * * **
9294038 TGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGAAACAAAT
1 CGAAGATAGCAGATCTGACATCCCTGTGCTTATAGGGAACGGAT
* * * * *
9294082 CTAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAACAGAT
1 CGAAGATAGCAGATCTGACATCCCTGTGCTTATAG-GGAACGGAT
* ** * *
9294127 CAAAGATTTCAG--CATGGCATCCCTGTGCTTATAGGGAAC-AAGT
1 CGAAGATAGCAGATC-TGACATCCCTGTGCTTATAGGGAACGGA-T
* * * * * * * *
9294170 TGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGAAAC-AAGT
1 CGAAGATAGCAGATCTGACATCCCTGTGCTTATAGGGAACGGA-T
* * * * * * *
9294214 TGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAAC-AAGT
1 CGAAGATAGCAGATCTGACATCCCTGTGCTTATAGGGAACGGA-T
* * * * * *
9294258 TGAAAACATCAGATTTGGCATCCCTGTGCTTATAGGGAACGGAT
1 CGAAGATAGCAGATCTGACATCCCTGTGCTTATAGGGAACGGAT
* * * * *
9294302 CGAAGATAGGAGATCTGACATTCCTGTGCTTACAGTGAAGCAGAT
1 CGAAGATAGCAGATCTGACATCCCTGTGCTTATAGGGAA-CGGAT
* ** ** *
9294347 CAAAGATTTCAG--CATGGTATCCCTGTGCTTATAGGGAAC-AAGT
1 CGAAGATAGCAGATC-TGACATCCCTGTGCTTATAGGGAACGGA-T
* * * * * *
9294390 TGAAAACATCAGATTTGACATCCCTGTGCTTATAGGGAAC-AAGT
1 CGAAGATAGCAGATCTGACATCCCTGTGCTTATAGGGAACGGA-T
* * * * * *
9294434 TGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAACGGAT
1 CGAAGATAGCAGATCTGACATCCCTGTGCTTATAGGGAACGGAT
* * *
9294478 CGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAA-GTAGAT
1 CGAAGATAGCAGATCTGACATCCCTGTGCTTATAGGGAACG--GAT
** *
9294523 CGAAGATTTCAG--CATGACATCCCTGTGCTTATAGGGAAC-AAGT
1 CGAAGATAGCAGATC-TGACATCCCTGTGCTTATAGGGAACGGA-T
* * * * *
9294566 TGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACGGAT
1 CGAAGATAGCAGATCTGACATCCCTGTGCTTATAGGGAACGGAT
* * * * *
9294610 CGAAGATAGCAAATCTGACATTCCTGTGCTTACAGTGAAGCAGAT
1 CGAAGATAGCAGATCTGACATCCCTGTGCTTATAGGGAA-CGGAT
*
9294655 CAAAGATAGC
1 CGAAGATAGC
9294665 GGATATCGCC
Statistics
Matches: 573, Mismatches: 115, Indels: 52
0.77 0.16 0.07
Matches are distributed among these distances:
42 4 0.01
43 42 0.07
44 458 0.80
45 69 0.12
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (44 bp):
CGAAGATAGCAGATCTGACATCCCTGTGCTTATAGGGAACGGAT
Found at i:9294953 original size:4 final size:4
Alignment explanation
Indices: 9294944--9294970 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
9294934 CCAAACACAA
9294944 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
9294971 AACCTTGGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:9295038 original size:34 final size:36
Alignment explanation
Indices: 9294972--9295042 Score: 92
Period size: 37 Copynumber: 2.0 Consensus size: 36
9294962 ATAAATAAAA
* *
9294972 ACCTTGGCCACCTACTCCACCACCTTTGTTGGCCACCC
1 ACCTTGGCCACCAACTCCACCACC--TCTTGGCCACCC
9295010 ACCTTGG-CACCAACTCCACCACC-CTTGGCCACC
1 ACCTTGGCCACCAACTCCACCACCTCTTGGCCACC
9295043 TAAACCACCC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
34 9 0.29
37 15 0.48
38 7 0.23
ACGTcount: A:0.18, C:0.49, G:0.13, T:0.20
Consensus pattern (36 bp):
ACCTTGGCCACCAACTCCACCACCTCTTGGCCACCC
Found at i:9295149 original size:23 final size:21
Alignment explanation
Indices: 9295123--9295170 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 21
9295113 GTTTTTGGTT
9295123 TTTTGGAGAAGGATTGTTCTTTG
1 TTTTGGAGAAGG-TT-TTCTTTG
* *
9295146 TTTTGGAGGAGGTTTTTTTTG
1 TTTTGGAGAAGGTTTTCTTTG
9295167 TTTT
1 TTTT
9295171 TTGGAGGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 10 0.43
22 2 0.09
23 11 0.48
ACGTcount: A:0.12, C:0.02, G:0.29, T:0.56
Consensus pattern (21 bp):
TTTTGGAGAAGGTTTTCTTTG
Found at i:9295172 original size:23 final size:23
Alignment explanation
Indices: 9295114--9295225 Score: 92
Period size: 21 Copynumber: 4.9 Consensus size: 23
9295104 TAGGGGTGGG
*
9295114 TTTTTGGTTTTTTGGAGAAGGATT
1 TTTTTTGTTTTTTGGAGAAGG-TT
* *
9295138 GTTCTTTG--TTTTGGAGGAGGTT
1 -TTTTTTGTTTTTTGGAGAAGGTT
9295160 TTTTTTGTTTTTT-G-G-AGGTGT
1 TTTTTTGTTTTTTGGAGAAGGT-T
9295181 TTTTTTGTTTTTTGGAAAGAAGGTT
1 TTTTTTGTTTTTTGG--AGAAGGTT
* *
9295206 ATTTTTGTTTCTTGGA-AAGG
1 TTTTTTGTTTTTTGGAGAAGG
9295226 CTAGTTTTTG
Statistics
Matches: 73, Mismatches: 6, Indels: 19
0.74 0.06 0.19
Matches are distributed among these distances:
20 4 0.05
21 21 0.29
22 8 0.11
23 16 0.22
25 20 0.27
26 4 0.05
ACGTcount: A:0.14, C:0.02, G:0.29, T:0.55
Consensus pattern (23 bp):
TTTTTTGTTTTTTGGAGAAGGTT
Found at i:9295210 original size:25 final size:23
Alignment explanation
Indices: 9295146--9295224 Score: 76
Period size: 25 Copynumber: 3.4 Consensus size: 23
9295136 TTGTTCTTTG
*
9295146 TTTTGG-AGGAGGTTTTTTTTGTT
1 TTTTGGAAAGAGG-TTTTTTTGTT
9295169 TTTTGG--AG-GTGTTTTTTTGTT
1 TTTTGGAAAGAG-GTTTTTTTGTT
9295190 TTTTGGAAAGAAGGTTATTTTTGTT
1 TTTTGGAAAG-AGGTT-TTTTTGTT
*
9295215 TCTTGGAAAG
1 TTTTGGAAAG
9295225 GCTAGTTTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
21 17 0.35
22 2 0.04
23 8 0.17
24 3 0.06
25 18 0.38
ACGTcount: A:0.15, C:0.01, G:0.28, T:0.56
Consensus pattern (23 bp):
TTTTGGAAAGAGGTTTTTTTGTT
Found at i:9295538 original size:3 final size:3
Alignment explanation
Indices: 9295524--9295609 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
9295514 GAGCTTCGTT
* *
9295524 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
9295568 TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
9295610 ATATGCCCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 7 0.10
3 52 0.76
4 7 0.10
5 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:9295562 original size:27 final size:27
Alignment explanation
Indices: 9295523--9295609 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
9295513 AGAGCTTCGT
9295523 TTTATTATT-TTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTTTTACTATTA
*
9295550 TTTATATTATTATTATTATTT-C--TCA
1 TTTATATTATTATTATT-TTTACTATTA
* * *
9295575 TGTATA-TATTATTATTTATATTATTA
1 TTTATATTATTATTATTTTTACTATTA
9295601 -TTATATTAT
1 TTTATATTAT
9295610 ATATGCCCTC
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 9 0.19
27 13 0.27
28 3 0.06
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (27 bp):
TTTATATTATTATTATTTTTACTATTA
Found at i:9295584 original size:21 final size:18
Alignment explanation
Indices: 9295524--9295728 Score: 94
Period size: 18 Copynumber: 10.4 Consensus size: 18
9295514 GAGCTTCGTT
*
9295524 TTATTATTTTATTATTTTTA
1 TTATTA-TTTA-TATTATTA
*
9295544 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
*
9295562 TTATTATTTCTCATGTATATA
1 TTATTATTTAT-AT-TAT-TA
9295583 TTATTATTTATATTATTA
1 TTATTATTTATATTATTA
* *
9295601 TTA-TATTATATATGCCCTCTCCA
1 TTATTATT-TATAT----TAT-TA
9295624 -TATTTATTTATATTATTA
1 TTA-TTATTTATATTATTA
9295642 CTATCATTATTGT-TATT-TTA
1 -T-T-ATTATT-TATATTATTA
* * *
9295662 TTATTTTTTATTTCTAACTA
1 TTATTATTTATAT-T-ATTA
*
9295682 CTATTATTATATATATATGTA
1 TTATTATT-TATAT-TAT-TA
* *
9295703 TTATTGTTTGTATTATTA
1 TTATTATTTATATTATTA
9295721 TTATTATT
1 TTATTATT
9295729 ATCACCCCTA
Statistics
Matches: 142, Mismatches: 21, Indels: 46
0.68 0.10 0.22
Matches are distributed among these distances:
16 1 0.01
17 11 0.08
18 38 0.27
19 15 0.11
20 26 0.18
21 35 0.25
22 6 0.04
23 6 0.04
24 4 0.03
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:9295724 original size:6 final size:6
Alignment explanation
Indices: 9295634--9295730 Score: 51
Period size: 6 Copynumber: 16.0 Consensus size: 6
9295624 TATTTATTTA
* * * *
9295634 TATTAT TACTAT CATTAT TGTTAT T-TTAT TATT-T T-TTAT T-TCTAAC
1 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TAT-T-AT
* *
9295680 TACTAT TATTAT ATATATAT GTATTAT TGTT-T GTATTAT TATTAT TATTAT
1 TATTAT TATTAT -TAT-TAT -TATTAT TATTAT -TATTAT TATTAT TATTAT
9295731 CACCCCTATT
Statistics
Matches: 70, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
4 2 0.03
5 11 0.16
6 41 0.59
7 10 0.14
8 6 0.09
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (6 bp):
TATTAT
Found at i:9296700 original size:17 final size:19
Alignment explanation
Indices: 9296674--9296711 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
9296664 AAAATTATCG
9296674 TTTTAGT-AAAT-ATTAAC
1 TTTTAGTAAAATGATTAAC
*
9296691 TTTTATTAAAATGATTAAC
1 TTTTAGTAAAATGATTAAC
9296710 TT
1 TT
9296712 AAGGTGATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 4 0.22
19 8 0.44
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.50
Consensus pattern (19 bp):
TTTTAGTAAAATGATTAAC
Found at i:9298316 original size:3 final size:3
Alignment explanation
Indices: 9298308--9298350 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
9298298 AGACATGATT
9298308 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
9298351 GTTTTTTATC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:9299392 original size:2 final size:2
Alignment explanation
Indices: 9299385--9299417 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
9299375 CTATGTAAGT
9299385 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9299418 TCAAGTAGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9300238 original size:20 final size:20
Alignment explanation
Indices: 9300194--9300231 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
9300184 GAGTAAAGTC
**
9300194 TTAGAAATATTTGCAAATCG
1 TTAGAAATATAGGCAAATCG
9300214 TTAGAAATATAGGCAAAT
1 TTAGAAATATAGGCAAAT
9300232 TTTTAGATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.08, G:0.16, T:0.32
Consensus pattern (20 bp):
TTAGAAATATAGGCAAATCG
Found at i:9301627 original size:29 final size:29
Alignment explanation
Indices: 9301594--9301656 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
9301584 ACAACGTCAT
* *
9301594 TTTTTAGTTACATGATTACCAAGTGAGTA
1 TTTTTAGTTACATGACTACCAAGTAAGTA
9301623 TTTTTAGTTACATGACTACCAAGTAAGTA
1 TTTTTAGTTACATGACTACCAAGTAAGTA
9301652 TTTTT
1 TTTTT
9301657 TTTTTATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.44
Consensus pattern (29 bp):
TTTTTAGTTACATGACTACCAAGTAAGTA
Found at i:9301867 original size:15 final size:15
Alignment explanation
Indices: 9301849--9301914 Score: 55
Period size: 14 Copynumber: 4.3 Consensus size: 15
9301839 TACTAAAAAC
9301849 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
9301864 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
9301883 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
*
9301898 A-TTAATATTAA-AT
1 ATTTATTATTAATAT
9301911 ATTT
1 ATTT
9301915 TCAATAATAC
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
13 3 0.07
14 11 0.26
15 10 0.24
16 1 0.02
17 7 0.17
18 1 0.02
19 9 0.21
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:9304986 original size:5 final size:5
Alignment explanation
Indices: 9304976--9305033 Score: 53
Period size: 5 Copynumber: 11.2 Consensus size: 5
9304966 GCTATATATA
* * * * *
9304976 ATAAT ATAAT ATGAAT AAAAT ATAAG AAAAT ATAAT ATAAA ATAAT AAAAAT
1 ATAAT ATAAT AT-AAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT
9305028 ATAAT A
1 ATAAT A
9305034 AGTATTTTGC
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
5 33 0.80
6 8 0.20
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.29
Consensus pattern (5 bp):
ATAAT
Found at i:9305007 original size:21 final size:20
Alignment explanation
Indices: 9304973--9305034 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 20
9304963 TAAGCTATAT
9304973 ATAATAATATAATATGAATAAAA
1 ATAATAA-A-AATAT-AATAAAA
*
9304996 TATAA-GAAAATATAATATAAA
1 -ATAATAAAAATATAATA-AAA
9305017 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
9305035 GTATTTTGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
20 9 0.26
21 19 0.56
22 1 0.03
23 1 0.03
24 4 0.12
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (20 bp):
ATAATAAAAATATAATAAAA
Found at i:9305095 original size:22 final size:21
Alignment explanation
Indices: 9305059--9305112 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
9305049 AAAATATGGT
* *
9305059 AAAATAATTAGTATAAAAAAA
1 AAAATAAATAATATAAAAAAA
* *
9305080 CAAAATAAATAATATATAATAA
1 -AAAATAAATAATATAAAAAAA
*
9305102 AAAATATATAA
1 AAAATAAATAA
9305113 GAAAGATAGA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (21 bp):
AAAATAAATAATATAAAAAAA
Found at i:9305102 original size:14 final size:14
Alignment explanation
Indices: 9305083--9305112 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9305073 AAAAAAACAA
*
9305083 AATAAATAATATAT
1 AATAAAAAATATAT
9305097 AATAAAAAATATAT
1 AATAAAAAATATAT
9305111 AA
1 AA
9305113 GAAAGATAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AATAAAAAATATAT
Found at i:9305621 original size:18 final size:20
Alignment explanation
Indices: 9305600--9305645 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 20
9305590 ATTTATAGAT
*
9305600 AAAATATAT-GATAATAA-A
1 AAAATATATGGAAAATAATA
9305618 AAAATA-ATGGAAAATAATA
1 AAAATATATGGAAAATAATA
*
9305637 ATAATATAT
1 AAAATATAT
9305646 ATAGCTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 2 0.09
18 13 0.57
19 6 0.26
20 2 0.09
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (20 bp):
AAAATATATGGAAAATAATA
Found at i:9307907 original size:207 final size:206
Alignment explanation
Indices: 9307286--9308246 Score: 1465
Period size: 206 Copynumber: 4.7 Consensus size: 206
9307276 AGATCTGCTT
* * * *
9307286 CTTCGATTTGTTCTTTAATAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * *
9307351 GCGAAAACCAAATCAGCTATGTCTTCGATTTATTCCTTGTAAACACAAGGATACCAAACCATATT
66 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * ** * * *
9307416 GGATCTGCTTCAGTTTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATATA
9307481 GAGACGCCAAA
196 GAGACGCCAAA
* *
9307492 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGT-GTAAGTA
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCA-TCGTAAGCA
* * *
9307556 CGTGAAAGCTAAATCAGCTATGAT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATC
65 CGTGAAAACCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATC
* * * *
9307620 TTGGATCTTCTTCAGTATAAACATATGAATGCCAGATCTACTATGTATCTGCTCTCCGTCGAATA
129 TTGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATA
*
9307685 TGGAGACGCCAAA
194 TAGAGACGCCAAA
*
9307698 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * **
9307763 GTGAAAGCCAAATCAGCCATGTCTTCGATTTTGCTCCTTGTAAGTACAAGGATGCCAAACCATCT
66 GTGAAAACCAAATCAGCTATGTCTTCGA-TTTGTTCCTTGTAAACACAAGGATGCCAAACCATCT
* *
9307828 TGGATATGCTTCAGTATAAACATCTGAAGGCCAGATCTGCCATGTATCTGCTCTCCGTCGAATAT
130 TGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATAT
9307893 AGAGACGCCAAA
195 AGAGACGCCAAA
9307905 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* *
9307970 GTGAAATCCAAATCAGCTATGTCTTCGATTTGTT-C-------CACAAGGATGCCAAATCATCTT
66 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
*
9308027 GGATCTGCTTCAGTATAAACATCTAAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATATA
131 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATATA
9308092 GAGACGCCAAA
196 GAGACGCCAAA
* *
9308103 CTTTGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
9308168 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
9308233 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
9308247 CCAGATCTGC
Statistics
Matches: 689, Mismatches: 52, Indels: 27
0.90 0.07 0.04
Matches are distributed among these distances:
198 189 0.27
199 1 0.00
205 3 0.00
206 295 0.43
207 201 0.29
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATATA
GAGACGCCAAA
Found at i:9316613 original size:25 final size:27
Alignment explanation
Indices: 9316576--9316625 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
9316566 TCAAACATGC
9316576 ATTTAGGTCAATTTAACT-CTAGGGGT
1 ATTTAGGTCAATTTAACTACTAGGGGT
* *
9316602 ATTTCGGT-AATTTATCTACTAGGG
1 ATTTAGGTCAATTTAACTACTAGGG
9316626 TAAAACTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.26, C:0.12, G:0.22, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTACTAGGGGT
Found at i:9318148 original size:26 final size:26
Alignment explanation
Indices: 9318112--9318219 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
9318102 TGAAATGCCC
* *
9318112 ATCATGAAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
9318138 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
9318164 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
9318190 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
9318216 ATCA
1 ATCA
9318220 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:9322985 original size:5 final size:5
Alignment explanation
Indices: 9322975--9323032 Score: 53
Period size: 5 Copynumber: 11.2 Consensus size: 5
9322965 GCTATATATA
* * * * *
9322975 ATAAT ATAAT ATGAAT AAAAT ATAAG AAAAT ATAAT ATAAA ATAAT AAAAAT
1 ATAAT ATAAT AT-AAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT
9323027 ATAAT A
1 ATAAT A
9323033 AGTATTTTGC
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
5 33 0.80
6 8 0.20
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.29
Consensus pattern (5 bp):
ATAAT
Found at i:9323006 original size:21 final size:20
Alignment explanation
Indices: 9322972--9323033 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 20
9322962 TAAGCTATAT
9322972 ATAATAATATAATATGAATAAAA
1 ATAATAA-A-AATAT-AATAAAA
*
9322995 TATAA-GAAAATATAATATAAA
1 -ATAATAAAAATATAATA-AAA
9323016 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
9323034 GTATTTTGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
20 9 0.26
21 19 0.56
22 1 0.03
23 1 0.03
24 4 0.12
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (20 bp):
ATAATAAAAATATAATAAAA
Found at i:9323094 original size:22 final size:21
Alignment explanation
Indices: 9323058--9323111 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
9323048 AAAATATGGT
* *
9323058 AAAATAATTAGTATAAAAAAA
1 AAAATAAATAATATAAAAAAA
* *
9323079 CAAAATAAATAATATATAATAA
1 -AAAATAAATAATATAAAAAAA
*
9323101 AAAATATATAA
1 AAAATAAATAA
9323112 GAAAGATAGA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (21 bp):
AAAATAAATAATATAAAAAAA
Found at i:9323101 original size:14 final size:14
Alignment explanation
Indices: 9323082--9323111 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9323072 AAAAAAACAA
*
9323082 AATAAATAATATAT
1 AATAAAAAATATAT
9323096 AATAAAAAATATAT
1 AATAAAAAATATAT
9323110 AA
1 AA
9323112 GAAAGATAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AATAAAAAATATAT
Found at i:9323622 original size:18 final size:20
Alignment explanation
Indices: 9323601--9323646 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 20
9323591 ATTTATAGAT
*
9323601 AAAATATAT-GATAATAA-A
1 AAAATATATGGAAAATAATA
9323619 AAAATA-ATGGAAAATAATA
1 AAAATATATGGAAAATAATA
*
9323638 ATAATATAT
1 AAAATATAT
9323647 ATAGCTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 2 0.09
18 13 0.57
19 6 0.26
20 2 0.09
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (20 bp):
AAAATATATGGAAAATAATA
Found at i:9326515 original size:5 final size:5
Alignment explanation
Indices: 9326505--9326529 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
9326495 GTGCCCTTTA
9326505 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
9326530 CTTCTCACTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:9331142 original size:20 final size:20
Alignment explanation
Indices: 9331117--9331160 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
9331107 TTTGTTACAA
9331117 TAAGACCTAGTCTATAGGAC
1 TAAGACCTAGTCTATAGGAC
9331137 TAAGACCTAGTCTATAGGAC
1 TAAGACCTAGTCTATAGGAC
9331157 TAAG
1 TAAG
9331161 TTACTGCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25
Consensus pattern (20 bp):
TAAGACCTAGTCTATAGGAC
Found at i:9342536 original size:56 final size:55
Alignment explanation
Indices: 9342419--9342562 Score: 198
Period size: 56 Copynumber: 2.6 Consensus size: 55
9342409 GAGGGGTGTT
* *
9342419 AGGATATTATTATGGGATATTATTTTTAGCAATTTGATTCCTAATGGGATATTAT
1 AGGATATTATTATGGGATATTATTTTTAGTAATTTGATTCCTAATGGGATATTAG
* **
9342474 AGGATATAATTATGGGATATTATTTCTTAGTAATTTGATTTGTAATGGGATATTAG
1 AGGATATTATTATGGGATATTATTT-TTAGTAATTTGATTCCTAATGGGATATTAG
* **
9342530 ATGATATTATTATAAGATATTATTTTTTAGTAA
1 AGGATATTATTATGGGATATTA-TTTTTAGTAA
9342563 ATTAGTTCCT
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
55 24 0.31
56 51 0.65
57 3 0.04
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.47
Consensus pattern (55 bp):
AGGATATTATTATGGGATATTATTTTTAGTAATTTGATTCCTAATGGGATATTAG
Found at i:9342731 original size:24 final size:24
Alignment explanation
Indices: 9342699--9342746 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
9342689 TAAGGCTTGC
9342699 CAATATATTTTGATTGAAGTTTAG
1 CAATATATTTTGATTGAAGTTTAG
9342723 CAATATATTTTGATTGAAGTTTAG
1 CAATATATTTTGATTGAAGTTTAG
9342747 TATAGTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (24 bp):
CAATATATTTTGATTGAAGTTTAG
Found at i:9342755 original size:21 final size:22
Alignment explanation
Indices: 9342701--9342757 Score: 80
Period size: 24 Copynumber: 2.5 Consensus size: 22
9342691 AGGCTTGCCA
9342701 ATATATTTTGATTGAAGTTTAG
1 ATATATTTTGATTGAAGTTTAG
9342723 CAATATATTTTGATTGAAGTTTAG
1 --ATATATTTTGATTGAAGTTTAG
*
9342747 -TATAGTTTGAT
1 ATATATTTTGAT
9342758 GTAGAGTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
21 10 0.31
24 22 0.69
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.49
Consensus pattern (22 bp):
ATATATTTTGATTGAAGTTTAG
Found at i:9347763 original size:43 final size:47
Alignment explanation
Indices: 9347688--9347773 Score: 117
Period size: 44 Copynumber: 1.9 Consensus size: 47
9347678 AAAATGTTTG
*
9347688 AATATTATATATTCATACTAATTTTGCTTTTTTAATA-TAAAAGTAA
1 AATATTATATATTCATACTAATTTTACTTTTTTAATATTAAAAGTAA
* *
9347734 AATA-TATATATT-ATATTACTTTTAC-TTTTTAATATTAAAA
1 AATATTATATATTCATACTAATTTTACTTTTTTAATATTAAAA
9347774 TTTTGTTTCT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 9 0.25
44 15 0.42
45 8 0.22
46 4 0.11
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (47 bp):
AATATTATATATTCATACTAATTTTACTTTTTTAATATTAAAAGTAA
Found at i:9349414 original size:16 final size:15
Alignment explanation
Indices: 9349368--9349415 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
9349358 TCTAAATTAC
*
9349368 AACTGAAGTAAAACCA
1 AACTGAA-TAAAACTA
*
9349384 AACTTAATAAAAACTA
1 AACTGAAT-AAAACTA
9349400 AACTGAATAACAACTA
1 AACTGAATAA-AACTA
9349416 TTCATAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 3 0.11
16 24 0.89
ACGTcount: A:0.58, C:0.17, G:0.06, T:0.19
Consensus pattern (15 bp):
AACTGAATAAAACTA
Found at i:9355652 original size:35 final size:34
Alignment explanation
Indices: 9355633--9355703 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 34
9355623 TTTAAATGTG
9355633 TTAATGATCCCTATATTCTTTTAAAATTTAAAATT
1 TTAATGATCCCTATATTC-TTTAAAATTTAAAATT
*
9355668 TTAATGATTCCTATATTCTTTTAAAATTTAAAATT
1 TTAATGATCCCTATATTC-TTTAAAATTTAAAATT
9355703 T
1 T
9355704 AGTCATTATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.10, G:0.03, T:0.51
Consensus pattern (34 bp):
TTAATGATCCCTATATTCTTTAAAATTTAAAATT
Found at i:9356005 original size:29 final size:30
Alignment explanation
Indices: 9355973--9356034 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 30
9355963 AAAAGTCGTG
* *
9355973 AAAAAACTC-TTTAAAAT-TTTAAAAAAAT
1 AAAAAAATCATTTAAAATAATTAAAAAAAT
*
9356001 AAAAAAATCATTTTAAAATAATTAAAAATAT
1 AAAAAAATCA-TTTAAAATAATTAAAAAAAT
9356032 AAA
1 AAA
9356035 TTATATTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 8 0.29
30 8 0.29
31 12 0.43
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.31
Consensus pattern (30 bp):
AAAAAAATCATTTAAAATAATTAAAAAAAT
Found at i:9356581 original size:15 final size:16
Alignment explanation
Indices: 9356552--9356589 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
9356542 AAATGGGACC
*
9356552 ATTTTTATATAAAATT
1 ATTTTAATATAAAATT
*
9356568 CTTTTAATAT-AAATT
1 ATTTTAATATAAAATT
9356583 ATTTTAA
1 ATTTTAA
9356590 AAAATAATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTTAATATAAAATT
Done.