Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 353 of 433
Found at i:111027489 original size:215 final size:219
Alignment explanation
Indices: 111027111--111027547 Score: 774
Period size: 215 Copynumber: 2.0 Consensus size: 219
111027101 ATCACATATA
*
111027111 TACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
111027176 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
66 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
*
111027241 GCCTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGCC-T-T-ATATAT-A
131 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATAA
111027302 CACTTTCACATTCATCACATCGGC
196 CACTTTCACATTCATCACATCGGC
*
111027326 TACACTTTCGCATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
1 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
*
111027391 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAG
66 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
111027456 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
131 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CATATAT
*
111027521 AGACACTTTCGCATTCATCACATCGGC
194 A-ACACTTTCACATTCATCACATCGGC
111027548 CATTAGGCCT
Statistics
Matches: 210, Mismatches: 5, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
215 178 0.85
216 1 0.00
217 1 0.00
220 6 0.03
222 24 0.11
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (219 bp):
TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATAA
CACTTTCACATTCATCACATCGGC
Found at i:111031079 original size:15 final size:15
Alignment explanation
Indices: 111031038--111031088 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
111031028 TTTGAAAAAA
*
111031038 ATTTAATTATATTGAAT
1 ATTTAA-TAT-TTAAAT
* *
111031055 AATTATTATTTAAAT
1 ATTTAATATTTAAAT
111031070 ATTTAATATTTAAAT
1 ATTTAATATTTAAAT
111031085 -TTTA
1 ATTTA
111031089 GGTAAATCAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
14 4 0.14
15 18 0.62
16 3 0.10
17 4 0.14
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
ATTTAATATTTAAAT
Found at i:111032734 original size:41 final size:41
Alignment explanation
Indices: 111032538--111032890 Score: 426
Period size: 41 Copynumber: 8.7 Consensus size: 41
111032528 AACTTTTTGC
* *
111032538 GGCGTTTGGACCAAAAATGTCGCTATTGATCAG-TTTTAGT
1 GGCGTTTGGGCCAAAAATGCCGCTATTGATCAGTTTTTAGT
* * *
111032578 GGCGTTTGGACCAAAAACGCCACTATTGATCAGTTTTTAGT
1 GGCGTTTGGGCCAAAAATGCCGCTATTGATCAGTTTTTAGT
* * * *
111032619 AGCG-TTGGGCCAACAACGCCGCTATTTATCAGTTTTTAGT
1 GGCGTTTGGGCCAAAAATGCCGCTATTGATCAGTTTTTAGT
* * * * *
111032659 GGCGTTT-GGCTAAAAACGCTGCTATTCATAAGTTTTTAGT
1 GGCGTTTGGGCCAAAAATGCCGCTATTGATCAGTTTTTAGT
* *
111032699 GGCCTTTGGGCCAAAAATGCCGATATTGATCAGTTTTTAGT
1 GGCGTTTGGGCCAAAAATGCCGCTATTGATCAGTTTTTAGT
* *
111032740 GGCATTTTGGCCAAAAATGCCGCTATTGATCAGTTTTTAGT
1 GGCGTTTGGGCCAAAAATGCCGCTATTGATCAGTTTTTAGT
* *
111032781 GGCGTTTGGGCGAAAAATACCGCTATTGATCTA-TTTTTAGT
1 GGCGTTTGGGCCAAAAATGCCGCTATTGATC-AGTTTTTAGT
** * * *
111032822 GGCACTTGGGCGAAAAACGCCGCTATTAATCAGTTTTTAGT
1 GGCGTTTGGGCCAAAAATGCCGCTATTGATCAGTTTTTAGT
* *
111032863 GGTGTTTTGGCCAAAAATGCCGCTATTG
1 GGCGTTTGGGCCAAAAATGCCGCTATTG
111032891 TTTAGTCTTT
Statistics
Matches: 268, Mismatches: 40, Indels: 9
0.85 0.13 0.03
Matches are distributed among these distances:
40 100 0.37
41 167 0.62
42 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.34
Consensus pattern (41 bp):
GGCGTTTGGGCCAAAAATGCCGCTATTGATCAGTTTTTAGT
Found at i:111034379 original size:42 final size:42
Alignment explanation
Indices: 111034248--111034392 Score: 177
Period size: 42 Copynumber: 3.4 Consensus size: 42
111034238 CAGATAACAG
111034248 GGTCTTACAGGAAATCAAGTACGATGCCAACGTCCCAGACGC
1 GGTCTTACAGGAAATCAAGTACGATGCCAACGTCCCAGACGC
* * * * **
111034290 TGTCTTACATGTAATCAAATATCGATGCC-ACTGTCTTAGACAG-
1 GGTCTTACAGGAAATCAAGTA-CGATGCCAAC-GTCCCAGAC-GC
111034333 GGTCTTACAGGAAATCAAGTACGATGCCAACGTCCCAGACGC
1 GGTCTTACAGGAAATCAAGTACGATGCCAACGTCCCAGACGC
*
111034375 GGTCTTACACGTAAATCA
1 GGTCTTACA-GGAAATCA
111034393 TAAATTAATA
Statistics
Matches: 84, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
41 1 0.01
42 42 0.50
43 40 0.48
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.23
Consensus pattern (42 bp):
GGTCTTACAGGAAATCAAGTACGATGCCAACGTCCCAGACGC
Found at i:111041751 original size:18 final size:18
Alignment explanation
Indices: 111041728--111041766 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
111041718 ATTAAACATA
* *
111041728 AAATAAATGAAATGAAAT
1 AAATAAATAAAATAAAAT
111041746 AAATAAATAAAATAAAAT
1 AAATAAATAAAATAAAAT
111041764 AAA
1 AAA
111041767 GAATAGATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAATAAAATAAAAT
Found at i:111042671 original size:44 final size:44
Alignment explanation
Indices: 111042621--111042708 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 44
111042611 TTCGACCTTA
*
111042621 AGTCGATGAGGCACTATAAGTGTCGTACTGTTACT-TTGACTTCG
1 AGTCGATGAGGCACCATAAGTGTCGTACTGTTACTGTT-ACTTCG
* **
111042665 AGTCGATGTGGCACCATGTGTGTCGTACTGTTACTGTTACTTCG
1 AGTCGATGAGGCACCATAAGTGTCGTACTGTTACTGTTACTTCG
111042709 GTTTAATCTG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 37 0.95
45 2 0.05
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.35
Consensus pattern (44 bp):
AGTCGATGAGGCACCATAAGTGTCGTACTGTTACTGTTACTTCG
Found at i:111053905 original size:19 final size:19
Alignment explanation
Indices: 111053881--111053921 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
111053871 CATGGCCATA
111053881 TACAAAATGAATCAAATAT
1 TACAAAATGAATCAAATAT
111053900 TACAAAATGAATCAAATAT
1 TACAAAATGAATCAAATAT
111053919 TAC
1 TAC
111053922 CATAAGCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.56, C:0.12, G:0.05, T:0.27
Consensus pattern (19 bp):
TACAAAATGAATCAAATAT
Found at i:111054251 original size:19 final size:19
Alignment explanation
Indices: 111054227--111054266 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
111054217 TGTTTCATCA
*
111054227 TAAATTCATAGGCATAACT
1 TAAATTCATAGACATAACT
**
111054246 TAAATTTGTAGACATAACT
1 TAAATTCATAGACATAACT
111054265 TA
1 TA
111054267 CACATTTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGACATAACT
Found at i:111055346 original size:29 final size:28
Alignment explanation
Indices: 111055299--111055365 Score: 98
Period size: 29 Copynumber: 2.4 Consensus size: 28
111055289 GTTTGCAGGT
* *
111055299 AAAATATTTTCTGGAAAATGATTTCTGG
1 AAAATAATTTCTGAAAAATGATTTCTGG
111055327 AAAATAATTTCTTGAAAAATGATTTCTGG
1 AAAATAATTTC-TGAAAAATGATTTCTGG
*
111055356 AAAATGATTT
1 AAAATAATTT
111055366 ACTTTTCTGG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
28 10 0.29
29 25 0.71
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.39
Consensus pattern (28 bp):
AAAATAATTTCTGAAAAATGATTTCTGG
Found at i:111055351 original size:15 final size:14
Alignment explanation
Indices: 111055306--111055365 Score: 93
Period size: 14 Copynumber: 4.2 Consensus size: 14
111055296 GGTAAAATAT
111055306 TTTCTGGAAAATGA
1 TTTCTGGAAAATGA
*
111055320 TTTCTGGAAAATAA
1 TTTCTGGAAAATGA
*
111055334 TTTCTTGAAAAATGA
1 TTTC-TGGAAAATGA
111055349 TTTCTGGAAAATGA
1 TTTCTGGAAAATGA
111055363 TTT
1 TTT
111055366 ACTTTTCTGG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
14 29 0.71
15 12 0.29
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.40
Consensus pattern (14 bp):
TTTCTGGAAAATGA
Found at i:111055518 original size:2 final size:2
Alignment explanation
Indices: 111055511--111055545 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
111055501 GAGTTTACTT
111055511 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
111055546 TAATAAATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:111055868 original size:22 final size:22
Alignment explanation
Indices: 111055843--111055891 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
111055833 ATCCAAGTGC
* *
111055843 ATAACTAATATTACACCATATG
1 ATAACTAATATTACACCACAAG
111055865 ATAACTAATATTACACCACAAG
1 ATAACTAATATTACACCACAAG
111055887 ATAAC
1 ATAAC
111055892 AACAATATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.49, C:0.20, G:0.04, T:0.27
Consensus pattern (22 bp):
ATAACTAATATTACACCACAAG
Found at i:111056946 original size:27 final size:30
Alignment explanation
Indices: 111056880--111056952 Score: 89
Period size: 32 Copynumber: 2.5 Consensus size: 30
111056870 GTCAATCATT
*
111056880 TCAATATCCAACAAGCTTAAAACATAATAAAC
1 TCAATATCTAACAAGCTTAAAAC--AATAAAC
*
111056912 TCAATATCTAACAAGCTTGAAAC-AT-AA-
1 TCAATATCTAACAAGCTTAAAACAATAAAC
111056939 TCAATATCTAACAA
1 TCAATATCTAACAA
111056953 AATCAAGACA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 14 0.36
28 2 0.05
29 2 0.05
32 21 0.54
ACGTcount: A:0.51, C:0.21, G:0.04, T:0.25
Consensus pattern (30 bp):
TCAATATCTAACAAGCTTAAAACAATAAAC
Found at i:111064923 original size:22 final size:22
Alignment explanation
Indices: 111064897--111064948 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
111064887 AAATGAAAAT
111064897 GAAAATGAAATTGGAATACTTA
1 GAAAATGAAATTGGAATACTTA
111064919 GAAAATGAAATTGGAATACTTA
1 GAAAATGAAATTGGAATACTTA
*
111064941 TAAAATGA
1 GAAAATGA
111064949 TGGAAGAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.52, C:0.04, G:0.17, T:0.27
Consensus pattern (22 bp):
GAAAATGAAATTGGAATACTTA
Found at i:111076463 original size:36 final size:38
Alignment explanation
Indices: 111076376--111076466 Score: 100
Period size: 43 Copynumber: 2.4 Consensus size: 38
111076366 AATTACTTAA
111076376 AAAATATT-TAA-AAATTATTTTTTATATATCAAAATATT
1 AAAATATTATAATAAATTATTTTTTATATATC--AATATT
*
111076414 AACAATAAATTATAATAAATTATTTTTTATAT-TC-TTATT
1 AA-AAT--ATTATAATAAATTATTTTTTATATATCAATATT
111076453 AAAATATTATAATA
1 AAAATATTATAATA
111076467 TTAATTAAGT
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
36 9 0.19
38 5 0.11
39 9 0.19
41 3 0.06
42 5 0.11
43 16 0.34
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.47
Consensus pattern (38 bp):
AAAATATTATAATAAATTATTTTTTATATATCAATATT
Found at i:111076655 original size:13 final size:12
Alignment explanation
Indices: 111076588--111076656 Score: 59
Period size: 13 Copynumber: 5.3 Consensus size: 12
111076578 AATTTTAAAC
111076588 AAACTTTTTCAA
1 AAACTTTTTCAA
* *
111076600 AAAATATTTCTTAA
1 AAACT-TTT-TCAA
111076614 AATCACTTTTTCAA
1 AA--ACTTTTTCAA
111076628 AATACTTTTT-AA
1 AA-ACTTTTTCAA
111076640 AAACTCTTTTCAA
1 AAACT-TTTTCAA
111076653 AAAC
1 AAAC
111076657 AATGTTAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
11 3 0.07
12 12 0.26
13 16 0.35
14 10 0.22
15 3 0.07
16 2 0.04
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (12 bp):
AAACTTTTTCAA
Found at i:111076655 original size:26 final size:25
Alignment explanation
Indices: 111076588--111076655 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 25
111076578 AATTTTAAAC
111076588 AAACTTTTTCAAAAAATATTTCTTAA
1 AAACTTTTTC-AAAAATATTTCTTAA
111076614 AATCACTTTTTC-AAAATACTTT-TTAA
1 AA--ACTTTTTCAAAAATA-TTTCTTAA
111076640 AAACTCTTTTCAAAAA
1 AAACT-TTTTCAAAAA
111076656 CAATGTTAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
24 3 0.08
25 5 0.14
26 18 0.49
27 3 0.08
28 8 0.22
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (25 bp):
AAACTTTTTCAAAAATATTTCTTAA
Found at i:111085277 original size:16 final size:16
Alignment explanation
Indices: 111085256--111085289 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
111085246 CCAATATCCA
* *
111085256 ATTATCATATTTGCAC
1 ATTATCACATTTACAC
111085272 ATTATCACATTTACAC
1 ATTATCACATTTACAC
111085288 AT
1 AT
111085290 ATATATTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
ATTATCACATTTACAC
Found at i:111086082 original size:4 final size:4
Alignment explanation
Indices: 111086073--111086113 Score: 57
Period size: 4 Copynumber: 10.0 Consensus size: 4
111086063 GTGCTTCTGC
111086073 TTCT TTCT TTCT TTCT CTT-T TTCT TTCT TTCTT TTCT TTCT
1 TTCT TTCT TTCT TTCT -TTCT TTCT TTCT TTC-T TTCT TTCT
111086114 AATTTTGGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 2 0.06
4 26 0.76
5 6 0.18
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTCT
Found at i:111086098 original size:20 final size:19
Alignment explanation
Indices: 111086073--111086111 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
111086063 GTGCTTCTGC
111086073 TTCTTTCTTTCTTTCTCTTT
1 TTCTTTCTTTCTTT-TCTTT
111086093 TTCTTTCTTTCTTTTCTTT
1 TTCTTTCTTTCTTTTCTTT
111086112 CTAATTTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (19 bp):
TTCTTTCTTTCTTTTCTTT
Found at i:111086242 original size:39 final size:40
Alignment explanation
Indices: 111086170--111086247 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 40
111086160 TTATTTGTTT
*
111086170 TATTATTATATAATATATATATACTTAACAATTAAGATTTCA
1 TATTATAATATAATATATATATAC-TAACAATTAA-ATTTCA
111086212 TATTATAATATAATATA-ATATA-TATA-AATTAAATTT
1 TATTATAATATAATATATATATACTA-ACAATTAAATTT
111086248 ACACATAAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
38 4 0.12
39 8 0.24
40 1 0.03
41 5 0.15
42 16 0.47
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (40 bp):
TATTATAATATAATATATATATACTAACAATTAAATTTCA
Found at i:111095256 original size:29 final size:28
Alignment explanation
Indices: 111095224--111095326 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
111095214 GTGACGAGAT
* *
111095224 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
111095253 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
111095282 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
111095311 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
111095327 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:111101703 original size:2 final size:2
Alignment explanation
Indices: 111101698--111101727 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
111101688 TATATATATA
111101698 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
111101728 CAAGTGCCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:111106039 original size:6 final size:6
Alignment explanation
Indices: 111106022--111106055 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
111106012 GGATAAAAAG
* *
111106022 GATGAT GATGGT GGTGGT GATGGT GATGGT GATG
1 GATGGT GATGGT GATGGT GATGGT GATGGT GATG
111106056 AACTTGACTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.18, C:0.00, G:0.50, T:0.32
Consensus pattern (6 bp):
GATGGT
Found at i:111108304 original size:23 final size:23
Alignment explanation
Indices: 111108270--111108315 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
111108260 AATTGATTAT
* *
111108270 ATTAAAATTAAAATATAAATATA
1 ATTAAAAATAAAAAATAAATATA
*
111108293 ATTAAAAATAAAAAATATATATA
1 ATTAAAAATAAAAAATAAATATA
111108316 TTTATTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
ATTAAAAATAAAAAATAAATATA
Found at i:111114330 original size:16 final size:16
Alignment explanation
Indices: 111114309--111114350 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
111114299 ATTTTAAGAT
111114309 TTTTAAAATGTTTATA
1 TTTTAAAATGTTTATA
*
111114325 TTTT-AAAT-TTTATT
1 TTTTAAAATGTTTATA
111114339 TATTTAAAATGT
1 T-TTTAAAATGT
111114351 CAGTTATTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
14 6 0.27
15 7 0.32
16 8 0.36
17 1 0.05
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (16 bp):
TTTTAAAATGTTTATA
Found at i:111114408 original size:24 final size:24
Alignment explanation
Indices: 111114380--111114434 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
111114370 GTTTGGAATT
*
111114380 AAAATTTTATAAATTAAA-AATAAA
1 AAAATTTTA-AAAATAAATAATAAA
* *
111114404 AAAATATTAAAAATAAATAATATA
1 AAAATTTTAAAAATAAATAATAAA
111114428 AAAATTT
1 AAAATTT
111114435 AATATGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 7 0.27
24 19 0.73
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (24 bp):
AAAATTTTAAAAATAAATAATAAA
Found at i:111114414 original size:17 final size:16
Alignment explanation
Indices: 111114392--111114432 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
111114382 AATTTTATAA
111114392 ATTAAAAATAAAAAAAT
1 ATTAAAAAT-AAAAAAT
*
111114409 ATTAAAAATAAATAAT
1 ATTAAAAATAAAAAAT
111114425 A-TAAAAAT
1 ATTAAAAAT
111114433 TTAATATGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.30
16 7 0.30
17 9 0.39
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
ATTAAAAATAAAAAAT
Found at i:111114438 original size:16 final size:16
Alignment explanation
Indices: 111114388--111114432 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
111114378 TTAAAATTTT
111114388 ATAA-ATTAAAAATAAA
1 ATAATATTAAAAAT-AA
*
111114404 AAAATATTAAAAATAA
1 ATAATATTAAAAATAA
111114420 ATAATA-TAAAAAT
1 ATAATATTAAAAAT
111114433 TTAATATGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 7 0.27
16 10 0.38
17 9 0.35
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
ATAATATTAAAAATAA
Found at i:111117262 original size:40 final size:39
Alignment explanation
Indices: 111117097--111117280 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
111117087 AAATTGAATG
* * *
111117097 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
111117137 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
111117177 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
111117217 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
111117256 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
111117281 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:111117305 original size:80 final size:81
Alignment explanation
Indices: 111117137--111117325 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
111117127 GCTGGAAATT
* * * *
111117137 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
111117202 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
111117218 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
111117281 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
111117297 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
111117326 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:111125381 original size:40 final size:39
Alignment explanation
Indices: 111125216--111125399 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
111125206 AAATTGAATG
* * *
111125216 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
111125256 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
111125296 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
111125336 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
111125375 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
111125400 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:111125424 original size:80 final size:81
Alignment explanation
Indices: 111125256--111125444 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
111125246 GCTGGAAATT
* * * *
111125256 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
111125321 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
111125337 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
111125400 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
111125416 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
111125445 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:111136448 original size:17 final size:18
Alignment explanation
Indices: 111136418--111136452 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
111136408 ATTTAGGCTC
111136418 TATATATCATCCATTACA
1 TATATATCATCCATTACA
111136436 TATATAT-ATCCATTACA
1 TATATATCATCCATTACA
111136453 CATTCTTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (18 bp):
TATATATCATCCATTACA
Found at i:111136811 original size:41 final size:41
Alignment explanation
Indices: 111136737--111136945 Score: 213
Period size: 41 Copynumber: 5.1 Consensus size: 41
111136727 TACCTAAAAT
*
111136737 AATACACCGGCACGAAGCCTGCTAGGCTCAAGGCCTGATAC
1 AATACACCAGCACGAAGCCTGCTAGGCTCAAGGCCTGATAC
* * * *
111136778 AACACACTAGCATGAAGCCTGCTAGGCTTAAGGCCTGATAC
1 AATACACCAGCACGAAGCCTGCTAGGCTCAAGGCCTGATAC
* *
111136819 AATACACCAGCACAAAGCCTGCTAGGCTCAAAGCCTGATAC
1 AATACACCAGCACGAAGCCTGCTAGGCTCAAGGCCTGATAC
* * * * * *
111136860 AATACACC-GACAAGATGCCTACTAGGCTCAAAGCCTGTTAT
1 AATACACCAG-CACGAAGCCTGCTAGGCTCAAGGCCTGATAC
** ** * * * *
111136901 GGTACACTTGCTCGAAGCCTGCTTGGCTCAAGACCCGATAC
1 AATACACCAGCACGAAGCCTGCTAGGCTCAAGGCCTGATAC
111136942 AATA
1 AATA
111136946 TCTCCAGTAT
Statistics
Matches: 134, Mismatches: 32, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
40 1 0.01
41 132 0.99
42 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.19
Consensus pattern (41 bp):
AATACACCAGCACGAAGCCTGCTAGGCTCAAGGCCTGATAC
Found at i:111139121 original size:31 final size:31
Alignment explanation
Indices: 111139086--111139149 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
111139076 AAGCTCATTG
*
111139086 TCGAGTTTGTCTCTACTTAACAAATGACCCT
1 TCGAGTTTGTCTCTACTCAACAAATGACCCT
111139117 TCGAGTTTGTCTCTACTCAACAAATGACCCT
1 TCGAGTTTGTCTCTACTCAACAAATGACCCT
111139148 TC
1 TC
111139150 ATATCTTCGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.34
Consensus pattern (31 bp):
TCGAGTTTGTCTCTACTCAACAAATGACCCT
Found at i:111139765 original size:13 final size:13
Alignment explanation
Indices: 111139747--111139773 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
111139737 AGAGTAATTG
111139747 CACATGAGCGTGT
1 CACATGAGCGTGT
111139760 CACATGAGCGTGT
1 CACATGAGCGTGT
111139773 C
1 C
111139774 CCTTCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (13 bp):
CACATGAGCGTGT
Found at i:111152887 original size:18 final size:19
Alignment explanation
Indices: 111152853--111152889 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
111152843 TAGCTACGGA
111152853 ATTAAAACAATTAAAATTT
1 ATTAAAACAATTAAAATTT
*
111152872 ATTAATACAA-TAAAATTT
1 ATTAAAACAATTAAAATTT
111152890 CAATTTCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTAAAACAATTAAAATTT
Found at i:111153360 original size:14 final size:15
Alignment explanation
Indices: 111153327--111153367 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
111153317 CCATGTGTGA
*
111153327 CTTTCTTTTCCTCTTT
1 CTTTCTTTT-CTCGTT
111153343 CTTTCTTTT-TCGTT
1 CTTTCTTTTCTCGTT
111153357 CTTTCTTTTCT
1 CTTTCTTTTCT
111153368 TTCTAATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 13 0.57
15 1 0.04
16 9 0.39
ACGTcount: A:0.00, C:0.27, G:0.02, T:0.71
Consensus pattern (15 bp):
CTTTCTTTTCTCGTT
Found at i:111153433 original size:18 final size:20
Alignment explanation
Indices: 111153412--111153455 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
111153402 TTTTTTTTTG
111153412 TTATAC-TAACTT-TTATTA
1 TTATACTTAACTTATTATTA
*
111153430 TTATACTTTAATTTATTATTA
1 TTATAC-TTAACTTATTATTA
111153451 TTATA
1 TTATA
111153456 ATATATATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 6 0.27
20 5 0.23
21 11 0.50
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (20 bp):
TTATACTTAACTTATTATTA
Found at i:111153500 original size:10 final size:10
Alignment explanation
Indices: 111153485--111153523 Score: 51
Period size: 10 Copynumber: 3.6 Consensus size: 10
111153475 ATTATTAAGA
111153485 TAACATATTT
1 TAACATATTT
111153495 TAACATATTTTT
1 TAACATA--TTT
111153507 ATAACATATTT
1 -TAACATATTT
111153518 TAACAT
1 TAACAT
111153524 TTACTTAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 13 0.50
11 3 0.12
12 3 0.12
13 7 0.27
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (10 bp):
TAACATATTT
Found at i:111153503 original size:23 final size:23
Alignment explanation
Indices: 111153477--111153523 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
111153467 TTTACTTAAT
111153477 TATTAAGATAACATATTTTAACA
1 TATTAAGATAACATATTTTAACA
***
111153500 TATTTTTATAACATATTTTAACA
1 TATTAAGATAACATATTTTAACA
111153523 T
1 T
111153524 TTACTTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.47
Consensus pattern (23 bp):
TATTAAGATAACATATTTTAACA
Found at i:111153522 original size:33 final size:32
Alignment explanation
Indices: 111153485--111153561 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 32
111153475 ATTATTAAGA
***
111153485 TAACATATTTTAACATATTTTTATAACATATTT
1 TAACATATTTTAA-ATATTAAGATAACATATTT
*
111153518 TAACAT-TTACTTAATTATTAAGATAACATATTT
1 TAACATATT--TTAAATATTAAGATAACATATTT
111153551 TAACATATTTT
1 TAACATATTTT
111153562 TATAACATAG
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
32 4 0.11
33 27 0.73
34 6 0.16
ACGTcount: A:0.40, C:0.09, G:0.01, T:0.49
Consensus pattern (32 bp):
TAACATATTTTAAATATTAAGATAACATATTT
Found at i:111153525 original size:56 final size:56
Alignment explanation
Indices: 111153464--111153570 Score: 214
Period size: 56 Copynumber: 1.9 Consensus size: 56
111153454 TAATATATAT
111153464 ACATTTACTTAATTATTAAGATAACATATTTTAACATATTTTTATAACATATTTTA
1 ACATTTACTTAATTATTAAGATAACATATTTTAACATATTTTTATAACATATTTTA
111153520 ACATTTACTTAATTATTAAGATAACATATTTTAACATATTTTTATAACATA
1 ACATTTACTTAATTATTAAGATAACATATTTTAACATATTTTTATAACATA
111153571 GGTATAATTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.42, C:0.09, G:0.02, T:0.47
Consensus pattern (56 bp):
ACATTTACTTAATTATTAAGATAACATATTTTAACATATTTTTATAACATATTTTA
Found at i:111158721 original size:12 final size:12
Alignment explanation
Indices: 111158704--111158734 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
111158694 GAAGCATGGG
111158704 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
111158716 AGAAAAAGGGAA
1 AGAAAAAGAGAA
111158728 AGAAAAA
1 AGAAAAA
111158735 TAAAAGGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:111159769 original size:41 final size:41
Alignment explanation
Indices: 111159723--111159827 Score: 101
Period size: 38 Copynumber: 2.6 Consensus size: 41
111159713 CAACCTCGAG
*
111159723 TCGATGAGACACTGGGTGTCACTATTTTACTTCGGATAAAT
1 TCGATGAGACACTGGGTGTCACTATTTTACTTCGGATAAAC
** * * * * *
111159764 TCGATGAGGTACT-AG-GT-ACCACTTTACTTCGGCTAAGC
1 TCGATGAGACACTGGGTGTCACTATTTTACTTCGGATAAAC
111159802 T-GATGAGACACTGGGTGTCAACTATT
1 TCGATGAGACACTGGGTGTC-ACTATT
111159828 GCTTCGAACT
Statistics
Matches: 47, Mismatches: 13, Indels: 8
0.69 0.19 0.12
Matches are distributed among these distances:
37 9 0.19
38 18 0.38
39 4 0.09
40 1 0.02
41 15 0.32
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (41 bp):
TCGATGAGACACTGGGTGTCACTATTTTACTTCGGATAAAC
Found at i:111177483 original size:15 final size:15
Alignment explanation
Indices: 111177457--111177496 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
111177447 TTATAAAATT
* *
111177457 ATAAAAACAATTTTTA
1 ATAAAAA-AATTATAA
111177473 ATAAAAAAATTATAA
1 ATAAAAAAATTATAA
111177488 ATAAAAAAA
1 ATAAAAAAA
111177497 AAGTTCGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 15 0.68
16 7 0.32
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (15 bp):
ATAAAAAAATTATAA
Found at i:111179828 original size:31 final size:31
Alignment explanation
Indices: 111179793--111179873 Score: 126
Period size: 31 Copynumber: 2.6 Consensus size: 31
111179783 ATGTTTACAC
*
111179793 TTTCATTTTAGTCACTCAACCTTTAGGACGA
1 TTTCATTTTAGTCACCCAACCTTTAGGACGA
* *
111179824 TTTCATTTTAGTCACCCAACTTTTAGGTCGA
1 TTTCATTTTAGTCACCCAACCTTTAGGACGA
*
111179855 TTTCATTTTGGTCACCCAA
1 TTTCATTTTAGTCACCCAA
111179874 AAAATATTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.41
Consensus pattern (31 bp):
TTTCATTTTAGTCACCCAACCTTTAGGACGA
Found at i:111197969 original size:146 final size:146
Alignment explanation
Indices: 111197705--111197998 Score: 561
Period size: 146 Copynumber: 2.0 Consensus size: 146
111197695 GTATAAACAA
111197705 TTGTATATCAAAATATAACCTCAAACACAACTTATCAATTCATCAAATCCACACTTAACCAATGC
1 TTGTATATCAAAATATAACCTCAAACACAACTTATCAATTCATCAAATCCACACTTAACCAATGC
* *
111197770 ACCTATCATAGGTACCTCAAATACACATATCATTAACACATACCATTTCTATTTGCATTGAAATA
66 ACCTATCATAGGCACCTCAAATACACATATCATTAACACATACCATTTATATTTGCATTGAAATA
111197835 TCTACCTCATTCACAT
131 TCTACCTCATTCACAT
*
111197851 TTGTATATCAAAATATAACTTCAAACACAACTTATCAATTCATCAAATCCACACTTAACCAATGC
1 TTGTATATCAAAATATAACCTCAAACACAACTTATCAATTCATCAAATCCACACTTAACCAATGC
111197916 ACCTATCATAGGCACCTCAAATACACATATCATTAACACATACCATTTATATTTGCATTGAAATA
66 ACCTATCATAGGCACCTCAAATACACATATCATTAACACATACCATTTATATTTGCATTGAAATA
111197981 TCTACCTCATTCACAT
131 TCTACCTCATTCACAT
111197997 TT
1 TT
111197999 ATCTTAAGGT
Statistics
Matches: 145, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
146 145 1.00
ACGTcount: A:0.39, C:0.26, G:0.04, T:0.31
Consensus pattern (146 bp):
TTGTATATCAAAATATAACCTCAAACACAACTTATCAATTCATCAAATCCACACTTAACCAATGC
ACCTATCATAGGCACCTCAAATACACATATCATTAACACATACCATTTATATTTGCATTGAAATA
TCTACCTCATTCACAT
Found at i:111201322 original size:24 final size:24
Alignment explanation
Indices: 111201290--111201484 Score: 345
Period size: 24 Copynumber: 8.1 Consensus size: 24
111201280 GAATGTGACT
*
111201290 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
111201314 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
111201338 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
111201362 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
111201386 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
111201410 ACAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
111201434 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
111201458 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
111201482 ATA
1 ATA
111201485 TGGTCTTTGC
Statistics
Matches: 162, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 162 1.00
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:111205295 original size:31 final size:31
Alignment explanation
Indices: 111205259--111205323 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
111205249 TAAAGTGTAC
*
111205259 CCATCACCTAAGGAGGCATACTCTAAGTGTT
1 CCATCACCTAAGAAGGCATACTCTAAGTGTT
*
111205290 CCATCACCTAAGAAGGCATACTTTAAGTGTT
1 CCATCACCTAAGAAGGCATACTCTAAGTGTT
111205321 CCA
1 CCA
111205324 GTAACGGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (31 bp):
CCATCACCTAAGAAGGCATACTCTAAGTGTT
Found at i:111210598 original size:43 final size:43
Alignment explanation
Indices: 111210549--111210634 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
111210539 TCATATTTCA
* **
111210549 TTTCTCATCTCCTATTCATTTCTCATCTTTG-ACATTTCAATAT
1 TTTCTCATCTCATAACCATTTCTCATCTTTGCA-ATTTCAATAT
*
111210592 TTTCTCATCTCATAACCATTTCTTATCTTTGCAATTTCAATAT
1 TTTCTCATCTCATAACCATTTCTCATCTTTGCAATTTCAATAT
111210635 CAATCACATA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 37 0.97
44 1 0.03
ACGTcount: A:0.23, C:0.24, G:0.02, T:0.50
Consensus pattern (43 bp):
TTTCTCATCTCATAACCATTTCTCATCTTTGCAATTTCAATAT
Found at i:111210742 original size:114 final size:115
Alignment explanation
Indices: 111210581--111210801 Score: 383
Period size: 114 Copynumber: 1.9 Consensus size: 115
111210571 TCATCTTTGA
*
111210581 CATTTCAATATTTTCTCATCTCATAACCATTTCTTATCTTTGCAATTTCAATATCAATCACATAG
1 CATTTCAATATTTTCTCATCTCATAACCATTTCTTATCTTTGCAATTTCAATATCAATCACATAA
111210646 ATTATTAATTTA-TTTTCCCTATTAACACGACT-AGGACTCGAACGACTGT
66 ATTATTAATTTATTTTTCCCTATTAACACGACTCA-GACTCGAACGACTGT
* * *
111210695 CATTTTAATATTTTCTCATCTCATAATCATTTCTTATCTTTGCAATTTCAATATCTATCACATAA
1 CATTTCAATATTTTCTCATCTCATAACCATTTCTTATCTTTGCAATTTCAATATCAATCACATAA
111210760 ATTATTAATTTATTTTTCCCTATTAACACGACTCAGACTCGA
66 ATTATTAATTTATTTTTCCCTATTAACACGACTCAGACTCGA
111210802 TCTATACATG
Statistics
Matches: 101, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
114 73 0.72
115 27 0.27
116 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.43
Consensus pattern (115 bp):
CATTTCAATATTTTCTCATCTCATAACCATTTCTTATCTTTGCAATTTCAATATCAATCACATAA
ATTATTAATTTATTTTTCCCTATTAACACGACTCAGACTCGAACGACTGT
Found at i:111212293 original size:29 final size:30
Alignment explanation
Indices: 111212253--111212317 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
111212243 TCAATAACCC
*
111212253 TTTGTTTTTTTTC-TTTTTTTTCTTTTGCT
1 TTTGTATTTTTTCTTTTTTTTTCTTTTGCT
111212282 TTTGTATTTTTTCTTTTTTTTTCTTTTGCT
1 TTTGTATTTTTTCTTTTTTTTTCTTTTGCT
111212312 TTTGTA
1 TTTGTA
111212318 CCAGCAGTAC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 12 0.35
30 22 0.65
ACGTcount: A:0.03, C:0.09, G:0.08, T:0.80
Consensus pattern (30 bp):
TTTGTATTTTTTCTTTTTTTTTCTTTTGCT
Found at i:111222228 original size:21 final size:21
Alignment explanation
Indices: 111222202--111222250 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
111222192 ATACTTAAAT
111222202 ATTTAAAAAATAAAATAAAAA
1 ATTTAAAAAATAAAATAAAAA
* * *
111222223 ATTTAAAAAATATAATCATAA
1 ATTTAAAAAATAAAATAAAAA
111222244 ATTTAAA
1 ATTTAAA
111222251 TTTTATATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (21 bp):
ATTTAAAAAATAAAATAAAAA
Found at i:111234309 original size:22 final size:23
Alignment explanation
Indices: 111234260--111234333 Score: 71
Period size: 23 Copynumber: 3.3 Consensus size: 23
111234250 CAACTCATTG
** *
111234260 GAGCTTACCTTTTCGGCTCGTATA
1 GAGCTTACAATTTCAGCTCG-ATA
111234284 -AGCTTACAATTT-AGCTCGATA
1 GAGCTTACAATTTCAGCTCGATA
* * *
111234305 GAGCTTACCATTTCAACTCAATA
1 GAGCTTACAATTTCAGCTCGATA
111234328 GAGCTT
1 GAGCTT
111234334 GCTGTCTATT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
21 3 0.07
22 16 0.38
23 23 0.55
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (23 bp):
GAGCTTACAATTTCAGCTCGATA
Found at i:111234332 original size:23 final size:23
Alignment explanation
Indices: 111234235--111234333 Score: 67
Period size: 23 Copynumber: 4.3 Consensus size: 23
111234225 TCAGCTCGTA
** *
111234235 AGAGCTTACTGTTATCAACTCATT
1 AGAGCTTACCATT-TCAACTCAAT
* * ** *
111234259 GGAGCTTACCTTTTCGGCTCGTAT
1 AGAGCTTACCATTTCAACTC-AAT
* * *
111234283 A-AGCTTACAATTT-AGCTCGAT
1 AGAGCTTACCATTTCAACTCAAT
111234304 AGAGCTTACCATTTCAACTCAAT
1 AGAGCTTACCATTTCAACTCAAT
111234327 AGAGCTT
1 AGAGCTT
111234334 GCTGTCTATT
Statistics
Matches: 57, Mismatches: 15, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
21 3 0.05
22 15 0.26
23 28 0.49
24 11 0.19
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.34
Consensus pattern (23 bp):
AGAGCTTACCATTTCAACTCAAT
Found at i:111237799 original size:17 final size:18
Alignment explanation
Indices: 111237777--111237811 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
111237767 AATCTAGATG
111237777 TGTGGGCC-ACACAAGCA
1 TGTGGGCCTACACAAGCA
*
111237794 TGTGGGCCTACACGAGCA
1 TGTGGGCCTACACAAGCA
111237812 AGCCACACGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.26, C:0.29, G:0.31, T:0.14
Consensus pattern (18 bp):
TGTGGGCCTACACAAGCA
Found at i:111238262 original size:13 final size:12
Alignment explanation
Indices: 111238240--111238283 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 12
111238230 GGGGTAGGAT
111238240 TCTGATTATCTGA
1 TCTG-TTATCTGA
111238253 TCTGTATATCTGA
1 TCTGT-TATCTGA
111238266 CTCTGTTATCTGAA
1 -TCTGTTATCTG-A
111238280 TCTG
1 TCTG
111238284 AAATGGGCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 21 0.75
14 6 0.21
ACGTcount: A:0.20, C:0.18, G:0.16, T:0.45
Consensus pattern (12 bp):
TCTGTTATCTGA
Found at i:111242832 original size:27 final size:28
Alignment explanation
Indices: 111242802--111242935 Score: 125
Period size: 27 Copynumber: 5.0 Consensus size: 28
111242792 AGTGGATAAG
* *
111242802 TTGTAAAATTACCAAAATACCCCTAG-T
1 TTGTAAAATTACCAAAATACCCCTCGAC
* * *
111242829 TTGTAAAATTACCAAAATGCTCCT-GAT
1 TTGTAAAATTACCAAAATACCCCTCGAC
* **
111242856 TTGTGAAATTACTGAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCTCGAC
* **
111242883 CTGTAAAATTACTGAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCTCGAC
*
111242910 TTGTAAAATTACCAAAGTA-CCCTCGA
1 TTGTAAAATTACCAAAATACCCCTCGA
111242936 TTTACAAAAT
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 4 0.04
27 87 0.96
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.29
Consensus pattern (28 bp):
TTGTAAAATTACCAAAATACCCCTCGAC
Found at i:111242944 original size:27 final size:26
Alignment explanation
Indices: 111242887--111242988 Score: 78
Period size: 27 Copynumber: 3.8 Consensus size: 26
111242877 CTCGACCTGT
* * **
111242887 AAAATTACTGAAATACCCTCGACTTGT
1 AAAATTAC-CAAATACCCTCGATTTAC
111242914 AAAATTACCAAAGTACCCTCGATTTAC
1 AAAATTACCAAA-TACCCTCGATTTAC
****
111242941 AAAATTATCGTTTTACCCTCGATTTAC
1 AAAATTA-CCAAATACCCTCGATTTAC
**
111242968 AAAATTATAGAAATACCCTCG
1 AAAATTA-CCAAATACCCTCG
111242989 TAAGGTAGAA
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
26 3 0.05
27 57 0.93
28 1 0.02
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (26 bp):
AAAATTACCAAATACCCTCGATTTAC
Found at i:111243693 original size:2 final size:2
Alignment explanation
Indices: 111243686--111243721 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
111243676 GCTTCGCCAC
111243686 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
111243722 CTGTTATGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:111249413 original size:27 final size:27
Alignment explanation
Indices: 111249383--111249565 Score: 206
Period size: 27 Copynumber: 6.8 Consensus size: 27
111249373 AGTGGATAAG
**
111249383 TTGTAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTAAT
*
111249410 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAAT
*
111249437 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAAT
*
111249464 TTGTAAAATTACCAAAATACTCCTAAT
1 TTGTAAAATTACCAAAATACCCCTAAT
* ** * * *
111249491 TTGTGAAATTACTGAAATACCCTTGAC
1 TTGTAAAATTACCAAAATACCCCTAAT
* ** * *
111249518 CTGTAAAATTACTGAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCT-AAT
111249545 TTGTAAAATTACCAAAATACC
1 TTGTAAAATTACCAAAATACC
111249566 TTTGATTTAC
Statistics
Matches: 138, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
26 3 0.02
27 134 0.97
28 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAAT
Found at i:111249643 original size:27 final size:26
Alignment explanation
Indices: 111249613--111249666 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
111249603 AAAATTACAA
111249613 AAAT-ACCCTTGTAAGGTAGAATTACCG
1 AAATAACCC-TGTAAGGTAG-ATTACCG
* *
111249640 AAATAACCCTGTAGGGTAGGTTACCG
1 AAATAACCCTGTAAGGTAGATTACCG
111249666 A
1 A
111249667 TTTACCCCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 7 0.29
27 13 0.54
28 4 0.17
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (26 bp):
AAATAACCCTGTAAGGTAGATTACCG
Found at i:111250357 original size:27 final size:26
Alignment explanation
Indices: 111250313--111250364 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
111250303 CTCGTTGTAA
*
111250313 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
111250340 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
111250365 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:111250401 original size:2 final size:2
Alignment explanation
Indices: 111250394--111250421 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
111250384 GTGGCTTCGC
111250394 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
111250422 TATATATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:111254661 original size:68 final size:67
Alignment explanation
Indices: 111254589--111254738 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
111254579 CATCATGTGT
* * * *
111254589 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
111254651 ATGTAG
62 ATGTAG
** * *
111254657 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
111254722 AG
66 AG
111254724 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
111254739 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:111254694 original size:64 final size:64
Alignment explanation
Indices: 111254613--111254796 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
111254603 AGACATTATG
* *
111254613 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
111254677 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
111254742 AA
63 AA
* * * *
111254744 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
111254797 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:111255892 original size:2 final size:2
Alignment explanation
Indices: 111255885--111255909 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
111255875 ATGACATGTG
111255885 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
111255910 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:111257327 original size:12 final size:12
Alignment explanation
Indices: 111257312--111257340 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
111257302 CTTTTTCTTC
111257312 TTTTTTTTTCAA
1 TTTTTTTTTCAA
111257324 TTTTTTTTTCAA
1 TTTTTTTTTCAA
111257336 TTTTT
1 TTTTT
111257341 CGATTAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTTTTTCAA
Found at i:111257339 original size:20 final size:19
Alignment explanation
Indices: 111257316--111257359 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
111257306 TTCTTCTTTT
**
111257316 TTTTTCAATTTTTTTTTCAA
1 TTTTTCAATTAGTTTTTC-A
*
111257336 TTTTTCGATTAGTTTTTCA
1 TTTTTCAATTAGTTTTTCA
111257355 TTTTT
1 TTTTT
111257360 TGATATATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.16, C:0.09, G:0.05, T:0.70
Consensus pattern (19 bp):
TTTTTCAATTAGTTTTTCA
Found at i:111265289 original size:44 final size:44
Alignment explanation
Indices: 111265239--111265444 Score: 162
Period size: 44 Copynumber: 4.4 Consensus size: 44
111265229 TGCTCCTCTA
*
111265239 CAACTTCAAGGAGATAAGACTTGTGGCTTCAATCTACTCCACTG
1 CAACTTCAGGGAGATAAGACTTGTGGCTTCAATCTACTCCACTG
* * * **
111265283 CAACTTCAGGAAGATAAGATTTGTCATAATTTATAGCTTCAATCTGTTCCACTG
1 CAACTTCAGGGAGATAAGA-----C-----TTGTGGCTTCAATCTACTCCACTG
* * * * *
111265337 CCACTTCAGGGAAATAAGA-TTCGCTGTCTTCAGTCTGCTCCACTG
1 CAACTTCAGGGAGATAAGACTT-G-TGGCTTCAATCTACTCCACTG
* * * *
111265382 TAACTTCAGGGAGATAAGACTTGTGGCTTTAATCGACTCCACTA
1 CAACTTCAGGGAGATAAGACTTGTGGCTTCAATCTACTCCACTG
111265426 CAACTTCAGGGAGATAAGA
1 CAACTTCAGGGAGATAAGA
111265445 TTCGTCATTA
Statistics
Matches: 125, Mismatches: 24, Indels: 26
0.71 0.14 0.15
Matches are distributed among these distances:
43 2 0.02
44 50 0.40
45 34 0.27
46 2 0.02
49 1 0.01
54 36 0.29
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGACTTGTGGCTTCAATCTACTCCACTG
Found at i:111265348 original size:143 final size:143
Alignment explanation
Indices: 111265174--111265452 Score: 425
Period size: 143 Copynumber: 2.0 Consensus size: 143
111265164 GTGTATTTGC
* *
111265174 AGCTTCAATCTGTTCCACTGCAGCTTCAGGGAAAAAAGATTCGTTATATTCAGTCTGCTCCTCTA
1 AGCTTCAATCTGTTCCACTGCAGCTTCAGGGAAAAAAGATTCGCTATATTCAGTCTGCTCCACTA
* *
111265239 CAACTTCAAGGAGATAAGACTTGTGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATT
66 CAACTTCAAGGAGATAAGACTTGTGGCTTCAATCGACTCCACTACAACTTCAGGAAGATAAGATT
*
111265304 TGTCATAATTTAT
131 CGTCATAATTTAT
* * *
111265317 AGCTTCAATCTGTTCCACTGCCA-CTTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCACT
1 AGCTTCAATCTGTTCCACTG-CAGCTTCAGGGAAAAAAGATTCGCTATATTCAGTCTGCTCCACT
** * * *
111265381 GTAACTTCAGGGAGATAAGACTTGTGGCTTTAATCGACTCCACTACAACTTCAGGGAGATAAGAT
65 ACAACTTCAAGGAGATAAGACTTGTGGCTTCAATCGACTCCACTACAACTTCAGGAAGATAAGAT
111265446 TCGTCAT
130 TCGTCAT
111265453 TATGACTTAA
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
143 120 0.98
144 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (143 bp):
AGCTTCAATCTGTTCCACTGCAGCTTCAGGGAAAAAAGATTCGCTATATTCAGTCTGCTCCACTA
CAACTTCAAGGAGATAAGACTTGTGGCTTCAATCGACTCCACTACAACTTCAGGAAGATAAGATT
CGTCATAATTTAT
Found at i:111283739 original size:14 final size:15
Alignment explanation
Indices: 111283711--111283741 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
111283701 TAGGTGTTGA
111283711 CATTAAAATATTAAT
1 CATTAAAATATTAAT
111283726 CATTAAAA-ATTAAT
1 CATTAAAATATTAAT
111283740 CA
1 CA
111283742 ACCAAATACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (15 bp):
CATTAAAATATTAAT
Found at i:111284214 original size:3 final size:3
Alignment explanation
Indices: 111284206--111284231 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
111284196 CATATTCCCA
111284206 CAT CAT CAT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CA
111284232 CAATAATTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.31
Consensus pattern (3 bp):
CAT
Found at i:111302001 original size:3 final size:3
Alignment explanation
Indices: 111301993--111302027 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
111301983 TTCAATTTGT
111301993 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
111302028 TGGGTTAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:111302820 original size:52 final size:52
Alignment explanation
Indices: 111302742--111302846 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
111302732 AAACCAAACT
111302742 TAGCTAAATGACCTTGACCACCGCTCTAGCCACCGCAACGCCACCGCTATAG
1 TAGCTAAATGACCTTGACCACCGCTCTAGCCACCGCAACGCCACCGCTATAG
*
111302794 TAGCTAAATGACCTTGACCACCGCTCTAGCCACCGCAGCGCCACCGCTATAG
1 TAGCTAAATGACCTTGACCACCGCTCTAGCCACCGCAACGCCACCGCTATAG
111302846 T
1 T
111302847 CATCGCTTCT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.26, C:0.38, G:0.18, T:0.18
Consensus pattern (52 bp):
TAGCTAAATGACCTTGACCACCGCTCTAGCCACCGCAACGCCACCGCTATAG
Found at i:111328044 original size:34 final size:34
Alignment explanation
Indices: 111328001--111328103 Score: 206
Period size: 34 Copynumber: 3.0 Consensus size: 34
111327991 AGAAATTGAA
111328001 ATAATGTTTCTAGTCAAGCCTGGCACAAAATAAC
1 ATAATGTTTCTAGTCAAGCCTGGCACAAAATAAC
111328035 ATAATGTTTCTAGTCAAGCCTGGCACAAAATAAC
1 ATAATGTTTCTAGTCAAGCCTGGCACAAAATAAC
111328069 ATAATGTTTCTAGTCAAGCCTGGCACAAAATAAC
1 ATAATGTTTCTAGTCAAGCCTGGCACAAAATAAC
111328103 A
1 A
111328104 ATCCTCCAAA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 69 1.00
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (34 bp):
ATAATGTTTCTAGTCAAGCCTGGCACAAAATAAC
Found at i:111337584 original size:17 final size:17
Alignment explanation
Indices: 111337546--111337584 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
111337536 AATTGGGTTG
111337546 AAAAAATAATTTAATTA
1 AAAAAATAATTTAATTA
*
111337563 GAAAAATCAATTTAA-TA
1 AAAAAAT-AATTTAATTA
111337580 AAAAA
1 AAAAA
111337585 TTAACTAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (17 bp):
AAAAAATAATTTAATTA
Found at i:111342936 original size:96 final size:96
Alignment explanation
Indices: 111342747--111342927 Score: 256
Period size: 96 Copynumber: 1.9 Consensus size: 96
111342737 AGGTTGCATG
* * * * *
111342747 TTGATTGAATTGAGAAAACCATTATTGTTGAACAATTTAGGATGGTTTTATAAATCGTTATAGAA
1 TTGATTGAATTGAGAAAACCATTACTGTGGAACAATCTAAGATGGTATTATAAATCGTTATAGAA
111342812 TCATCGTTGTCGAGCAACCCAAGGTGACATA
66 TCATCGTTGTCGAGCAACCCAAGGTGACATA
* * *
111342843 TTGATTGAATTGAGAAAACCATTGCTGTCGGGA-AATCTAAGATGGTATTATAAATCGTTATAGT
1 TTGATTGAATTGAGAAAACCATTACTGT-GGAACAATCTAAGATGGTATTATAAATCGTTATAGA
* *
111342907 GTCATCGTTGTCGTGCAACCC
65 ATCATCGTTGTCGAGCAACCC
111342928 GGGATGACAG
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
96 72 0.97
97 2 0.03
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (96 bp):
TTGATTGAATTGAGAAAACCATTACTGTGGAACAATCTAAGATGGTATTATAAATCGTTATAGAA
TCATCGTTGTCGAGCAACCCAAGGTGACATA
Found at i:111353549 original size:19 final size:18
Alignment explanation
Indices: 111353527--111353570 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
111353517 ATTTTTAAAA
111353527 ATTAAAAACTATTAAAATT
1 ATTAAAAACTA-TAAAATT
* *
111353546 ATTAAAAAGTATAAATTT
1 ATTAAAAACTATAAAATT
111353564 A-TAAAAA
1 ATTAAAAA
111353571 ATATGTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 6 0.26
18 7 0.30
19 10 0.43
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (18 bp):
ATTAAAAACTATAAAATT
Found at i:111356563 original size:96 final size:96
Alignment explanation
Indices: 111356388--111356569 Score: 231
Period size: 96 Copynumber: 1.9 Consensus size: 96
111356378 GCTCCTCTTA
* * * * * *
111356388 GCCCTTTTGGCTTCAGCTTTTCTCTTGCTCGAACCAAGCGTCTTGGGATCCTTGTCTGCTCCATT
1 GCCCTCTTGGCTTCAGCTTTTCCCTTGCTCGAACCAAGCGTCGTGGGATCCATGTCTACTCCATC
* * * *
111356453 TTTCCCTTCGATGACAGACTTGCTCCCCATT
66 GTTCACATCAATGACAGACTTGCTCCCCATT
* * *
111356484 GCCCTCTTGGCTTC-GACTTTTCCCTTGCTTGAACCAAGCTTCGTGGGCTCCATGTCTACTCCAT
1 GCCCTCTTGGCTTCAG-CTTTTCCCTTGCTCGAACCAAGCGTCGTGGGATCCATGTCTACTCCAT
111356548 CGTTCACATCAATGACAGACTT
65 CGTTCACATCAATGACAGACTT
111356570 TTTCAGACAC
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
95 1 0.01
96 71 0.99
ACGTcount: A:0.15, C:0.32, G:0.18, T:0.35
Consensus pattern (96 bp):
GCCCTCTTGGCTTCAGCTTTTCCCTTGCTCGAACCAAGCGTCGTGGGATCCATGTCTACTCCATC
GTTCACATCAATGACAGACTTGCTCCCCATT
Found at i:111366695 original size:20 final size:19
Alignment explanation
Indices: 111366665--111366719 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
111366655 AATGGGACCA
111366665 TTAACTTAATTAATTTAAGGT
1 TTAA-TTAATTAATTT-AGGT
* *
111366686 TTAATTAATTAAATTATGT
1 TTAATTAATTAATTTAGGT
*
111366705 TTGATTAACTTAATT
1 TTAATTAA-TTAATT
111366720 ATATATAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 10 0.34
20 15 0.52
21 4 0.14
ACGTcount: A:0.38, C:0.04, G:0.07, T:0.51
Consensus pattern (19 bp):
TTAATTAATTAATTTAGGT
Found at i:111366711 original size:19 final size:19
Alignment explanation
Indices: 111366665--111366721 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
111366655 AATGGGACCA
* *
111366665 TTAACTTAATTAATTTAAGGT
1 TTAA-TTAATTAAATT-ATGT
111366686 TTAATTAATTAAATTATGT
1 TTAATTAATTAAATTATGT
*
111366705 TTGATTAACTT-AATTAT
1 TTAATTAA-TTAAATTAT
111366722 ATATAATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 16 0.50
20 12 0.38
21 4 0.12
ACGTcount: A:0.39, C:0.04, G:0.07, T:0.51
Consensus pattern (19 bp):
TTAATTAATTAAATTATGT
Found at i:111368765 original size:2 final size:2
Alignment explanation
Indices: 111368758--111368791 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
111368748 AGGGTGAAGG
111368758 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
111368792 TTATGCCTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:111376304 original size:39 final size:39
Alignment explanation
Indices: 111376223--111376385 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
111376213 TATGGTAACC
* *
111376223 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
111376263 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
111376302 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
111376341 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
111376380 CGCACA
1 CGCACA
111376386 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:111384291 original size:39 final size:39
Alignment explanation
Indices: 111384209--111384371 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
111384199 TATGGTAACC
* *
111384209 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
111384249 CGCACAATTGCCTTCGGGCTTAGCCCCGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
111384288 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
111384327 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
111384366 CGCACA
1 CGCACA
111384372 TTCATACACA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.34, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:111386931 original size:20 final size:19
Alignment explanation
Indices: 111386908--111386973 Score: 80
Period size: 20 Copynumber: 3.3 Consensus size: 19
111386898 CGTACAAACT
111386908 GTAATTCATTCATATAACCA
1 GTAATTCA-TCATATAACCA
*
111386928 GTAATTCATCTGTATAACCA
1 GTAATTCATC-ATATAACCA
111386948 GTAATTCATCAGTAATAA-CA
1 GTAATTCATCA-T-ATAACCA
111386968 GTAATT
1 GTAATT
111386974 TATCCATATC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
19 2 0.05
20 35 0.85
21 4 0.10
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (19 bp):
GTAATTCATCATATAACCA
Found at i:111387206 original size:46 final size:47
Alignment explanation
Indices: 111387139--111387266 Score: 174
Period size: 46 Copynumber: 2.8 Consensus size: 47
111387129 TTGAGCTGAT
* * * *
111387139 AAACAGTAAGCTCTATTGAGCTGAAAACGGTAAGCTCTATTAAGCTG
1 AAACAGTAAGCTCTATCGAGCTGAAATCGGTAAGCTCCAATAAGCTG
*
111387186 -AACAGCAAGCTCTATCGAGCTG-AATCGGTAAGCTCCAATAAGCTG
1 AAACAGTAAGCTCTATCGAGCTGAAATCGGTAAGCTCCAATAAGCTG
111387231 AAACAGTAAGCTCT-TACGAGCT-AAATCGGTAAGCTC
1 AAACAGTAAGCTCTAT-CGAGCTGAAATCGGTAAGCTC
111387267 ATACGAGCTG
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
45 21 0.29
46 51 0.71
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (47 bp):
AAACAGTAAGCTCTATCGAGCTGAAATCGGTAAGCTCCAATAAGCTG
Found at i:111387271 original size:23 final size:23
Alignment explanation
Indices: 111387192--111387275 Score: 77
Period size: 23 Copynumber: 3.7 Consensus size: 23
111387182 GCTGAACAGC
*
111387192 AAGCTC-TATCGAGCTGAATCGGT
1 AAGCTCATA-CGAGCTAAATCGGT
*
111387215 AAGCTCCAATA--AGCTGAAA-CAGT
1 AAGCT-C-ATACGAGCT-AAATCGGT
*
111387238 AAGCTCTTACGAGCTAAATCGGT
1 AAGCTCATACGAGCTAAATCGGT
111387261 AAGCTCATACGAGCT
1 AAGCTCATACGAGCT
111387276 GTGGTGAGTC
Statistics
Matches: 49, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
21 2 0.04
22 4 0.08
23 38 0.78
24 3 0.06
26 2 0.04
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (23 bp):
AAGCTCATACGAGCTAAATCGGT
Found at i:111388096 original size:21 final size:21
Alignment explanation
Indices: 111388049--111388098 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
111388039 AAATCACTTT
*
111388049 ATAAAAC-TTATTAATCTAGC
1 ATAAAACATTAATAATCTAGC
* * *
111388069 TTCAAACATTAATAATCTATC
1 ATAAAACATTAATAATCTAGC
111388090 ATAAAACAT
1 ATAAAACAT
111388099 ATAAAAAACC
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34
Consensus pattern (21 bp):
ATAAAACATTAATAATCTAGC
Found at i:111391916 original size:29 final size:29
Alignment explanation
Indices: 111391882--111392013 Score: 102
Period size: 29 Copynumber: 4.6 Consensus size: 29
111391872 TACTCGATTT
* *
111391882 CGCACACTTAGTGCCATGCAATTTAAGCC
1 CGCACACTTAGTGCCATACAATTCAAGCC
* ** * *
111391911 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACAATTCAAGCC
* * * *
111391940 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACAATTCAAGCC
* * * * * *
111391969 TGCACACTTAATGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACAATTCAAGCC
*
111391998 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
111392014 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 87 1.00
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACAATTCAAGCC
Found at i:111391974 original size:58 final size:58
Alignment explanation
Indices: 111391881--111392013 Score: 137
Period size: 58 Copynumber: 2.3 Consensus size: 58
111391871 ATACTCGATT
* * * *
111391881 TCGCACACTTAGTGCCATGCAATTTAAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-CAATTTAAGCACGCACACATAATGCCATACACTTCCAGCA
* * * * *
111391939 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAATGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATCA-ATTT-AAGCACGCACACATAATGCCATACACTTCCAGCA
111391998 T-GCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
111392014 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
56 1 0.02
57 4 0.06
58 57 0.90
59 1 0.02
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATCAATTTAAGCACGCACACATAATGCCATACACTTCCAGCA
Found at i:111399785 original size:54 final size:56
Alignment explanation
Indices: 111399720--111399875 Score: 192
Period size: 58 Copynumber: 2.8 Consensus size: 56
111399710 ATTTAAGCCC
* * *
111399720 GCACACATAGTGCCATACCCTTCGAGC-TCGCACAC-AGTGCCATATATTTCC-CAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACTAGTGCCATATATTTCCACAT
* *
111399774 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACAC-TAGTGCCATATATTTCCA-CAT
* *
111399832 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
1 GCACACTTAGTGCCATACACTTCCAGCATGCACAC-TAGTGCCA
111399876 ATCTCGTCAC
Statistics
Matches: 92, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
54 28 0.30
55 1 0.01
56 16 0.17
58 47 0.51
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.28
Consensus pattern (56 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACTAGTGCCATATATTTCCACAT
Found at i:111399804 original size:29 final size:29
Alignment explanation
Indices: 111399755--111399875 Score: 228
Period size: 29 Copynumber: 4.2 Consensus size: 29
111399745 GCTCGCACAC
111399755 AGTGCCATATATTTCC--CATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
111399782 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
111399811 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
111399840 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
111399869 AGTGCCA
1 AGTGCCA
111399876 ATCTCGTCAC
Statistics
Matches: 92, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
27 16 0.17
29 76 0.83
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:111403210 original size:27 final size:29
Alignment explanation
Indices: 111403178--111403240 Score: 112
Period size: 28 Copynumber: 2.2 Consensus size: 29
111403168 GCTCGCACAC
111403178 AGTGCCATATA-TTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
111403206 A-TGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
111403234 AGTGCCA
1 AGTGCCA
111403241 ATCTCGTCAC
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
27 9 0.27
28 19 0.58
29 5 0.15
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:111410989 original size:54 final size:56
Alignment explanation
Indices: 111410924--111411080 Score: 178
Period size: 57 Copynumber: 2.8 Consensus size: 56
111410914 ATTTAAGCCC
* * *
111410924 GCACACATAGTGCCATACCCTTCGAGC-TCGCACAC-AGTGCC-ATATTTCCAACAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACTAGTGCCAATATTTCCAACAT
* * *
111410978 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACAC-TAGTGCCA-ATATTTCCAACAT
* *
111411036 GCACACTTA-TGCCATATATTTCCAGCATGCACACTTAGTGCCAAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACAC-TAGTGCCAAT
111411081 CTCGTCACCG
Statistics
Matches: 92, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
54 28 0.30
55 1 0.01
56 8 0.09
57 34 0.37
58 21 0.23
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.27
Consensus pattern (56 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACTAGTGCCAATATTTCCAACAT
Found at i:111411007 original size:29 final size:29
Alignment explanation
Indices: 111410965--111411078 Score: 212
Period size: 29 Copynumber: 4.0 Consensus size: 29
111410955 ACACAGTGCC
*
111410965 ATATTTCCAACATGCACACTTAGTGCCAT
1 ATATTTCCAGCATGCACACTTAGTGCCAT
111410994 ATATTTCCAGCATGCACACTTAGTGCCAT
1 ATATTTCCAGCATGCACACTTAGTGCCAT
111411023 ATATTTCCAGCATGCACACTTA-TGCCAT
1 ATATTTCCAGCATGCACACTTAGTGCCAT
111411051 ATATTTCCAGCATGCACACTTAGTGCCA
1 ATATTTCCAGCATGCACACTTAGTGCCA
111411079 ATCTCGTCAC
Statistics
Matches: 83, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
28 28 0.34
29 55 0.66
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (29 bp):
ATATTTCCAGCATGCACACTTAGTGCCAT
Found at i:111411065 original size:57 final size:58
Alignment explanation
Indices: 111410965--111411078 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 58
111410955 ACACAGTGCC
111410965 ATATTTCCAACATGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCAT
1 ATATTTCCAACATGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCAT
*
111411023 ATATTTCCAGCATGCACACTTA-TGCCATATATTTCCAGCATGCACACTTAGTGCCA
1 ATATTTCCAACATGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
111411079 ATCTCGTCAC
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
57 34 0.62
58 21 0.38
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (58 bp):
ATATTTCCAACATGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCAT
Found at i:111411583 original size:2 final size:2
Alignment explanation
Indices: 111411576--111411603 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
111411566 AATGTATGTG
111411576 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
111411604 CAATGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:111420237 original size:20 final size:20
Alignment explanation
Indices: 111420212--111420250 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
111420202 ATGGACTAAA
* *
111420212 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTATAAAATTTG
111420232 ATGAAAAATTATAAAATTT
1 ATGAAAAATTATAAAATTT
111420251 TATGGATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:111424416 original size:2 final size:2
Alignment explanation
Indices: 111424409--111424443 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
111424399 AAGTATGTCC
111424409 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
111424444 CATGCATATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:111429586 original size:18 final size:18
Alignment explanation
Indices: 111429565--111429610 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
111429555 TGCAATAGAG
*
111429565 GTAGCAGGTGGAACAGAA
1 GTAGCAGGTAGAACAGAA
* *
111429583 GTAGCAGATAGAACAGAG
1 GTAGCAGGTAGAACAGAA
111429601 GTAGCTAGGT
1 GTAGC-AGGT
111429611 TGAGAGTTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.37, C:0.11, G:0.37, T:0.15
Consensus pattern (18 bp):
GTAGCAGGTAGAACAGAA
Found at i:111431175 original size:2 final size:2
Alignment explanation
Indices: 111431168--111431203 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
111431158 CCGATCAGAA
111431168 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
111431204 TCTTTTAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:111434683 original size:35 final size:35
Alignment explanation
Indices: 111434637--111434708 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
111434627 GTTTGGTATC
111434637 TTGAGACGGGGTTAGCCATTATCTTGAATTTATTG
1 TTGAGACGGGGTTAGCCATTATCTTGAATTTATTG
*
111434672 TTGAGATGGGGTTAGCCATTATCTTGAATTTATTG
1 TTGAGACGGGGTTAGCCATTATCTTGAATTTATTG
111434707 TT
1 TT
111434709 TACTTATGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.22, C:0.10, G:0.25, T:0.43
Consensus pattern (35 bp):
TTGAGACGGGGTTAGCCATTATCTTGAATTTATTG
Found at i:111437801 original size:9 final size:10
Alignment explanation
Indices: 111437774--111437798 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
111437764 TTTTTTTTTT
111437774 ATAAAATTAC
1 ATAAAATTAC
111437784 ATAAAATTAC
1 ATAAAATTAC
111437794 ATAAA
1 ATAAA
111437799 TTATATTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (10 bp):
ATAAAATTAC
Found at i:111437888 original size:30 final size:29
Alignment explanation
Indices: 111437837--111437898 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 29
111437827 GTATAATTTT
* *
111437837 AAAATTTAATCTCATAATTTATAACTATAAA
1 AAAATTTAATCTAAAAATTTATAA-T-TAAA
111437868 AAAATTTAAT-TAAAAATTTATAATTAAA
1 AAAATTTAATCTAAAAATTTATAATTAAA
111437896 AAA
1 AAA
111437899 TGCTAATGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 7 0.24
29 1 0.03
30 11 0.38
31 10 0.34
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (29 bp):
AAAATTTAATCTAAAAATTTATAATTAAA
Found at i:111438430 original size:20 final size:20
Alignment explanation
Indices: 111438407--111438454 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
111438397 CAAATTAACA
111438407 ATTAATATTAATTATTAATT
1 ATTAATATTAATTATTAATT
* *
111438427 ATTAA-ATAAAATTGTTAATT
1 ATTAATAT-TAATTATTAATT
111438447 -TTAATATT
1 ATTAATATT
111438455 TTTGAAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 5
0.74 0.10 0.16
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
ATTAATATTAATTATTAATT
Found at i:111439132 original size:2 final size:2
Alignment explanation
Indices: 111439125--111439152 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
111439115 CCAATTTCAA
111439125 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
111439153 CAATTTTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:111439779 original size:16 final size:15
Alignment explanation
Indices: 111439758--111439787 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
111439748 CTTTAAAAGT
111439758 TATAAAAAATATAAAC
1 TATAAAAAAT-TAAAC
111439774 TATAAAAAATTAAA
1 TATAAAAAATTAAA
111439788 ATTTCATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (15 bp):
TATAAAAAATTAAAC
Found at i:111440747 original size:26 final size:26
Alignment explanation
Indices: 111440700--111440750 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
111440690 TAAGCGAACC
* *
111440700 CTAGGTAGTAAGTTTAATATGCGAGT
1 CTAGGTAGTAAGTATAACATGCGAGT
* *
111440726 CTAGGTAGTATGTATGACATGCGAG
1 CTAGGTAGTAAGTATAACATGCGAG
111440751 CCCTAAGTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.29, T:0.31
Consensus pattern (26 bp):
CTAGGTAGTAAGTATAACATGCGAGT
Found at i:111441167 original size:18 final size:19
Alignment explanation
Indices: 111441137--111441172 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
111441127 AGGATTTTTA
111441137 CATGTGAAACCCTAGGTAT
1 CATGTGAAACCCTAGGTAT
111441156 CATGTG-AACCCTAGGTA
1 CATGTGAAACCCTAGGTA
111441173 ATATGCGAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (19 bp):
CATGTGAAACCCTAGGTAT
Found at i:111441182 original size:18 final size:18
Alignment explanation
Indices: 111441144--111441182 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
111441134 TTACATGTGA
*
111441144 AACCCTAGGTATCATGTG
1 AACCCTAGGTATCATGCG
111441162 AACCCTAGGTAAT-ATGCG
1 AACCCTAGGT-ATCATGCG
111441180 AAC
1 AAC
111441183 ATTGTATACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (18 bp):
AACCCTAGGTATCATGCG
Found at i:111443577 original size:26 final size:24
Alignment explanation
Indices: 111443532--111443589 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 24
111443522 TGTTAATAAA
*
111443532 TTTTA-TTTCTTTTAGTTTTATTTT
1 TTTTATTTTCTTTTAGCTTTA-TTT
*
111443556 GTTTTATTTTCTTTTTGCTTTATTT
1 -TTTTATTTTCTTTTAGCTTTATTT
111443581 TTTTATTTT
1 TTTTATTTT
111443590 TCTTGTCCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 9 0.30
25 8 0.27
26 13 0.43
ACGTcount: A:0.10, C:0.05, G:0.05, T:0.79
Consensus pattern (24 bp):
TTTTATTTTCTTTTAGCTTTATTT
Found at i:111452750 original size:26 final size:26
Alignment explanation
Indices: 111452714--111452849 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
111452704 TGATACAAAG
111452714 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
111452740 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
111452766 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
111452792 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
111452818 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
111452844 TGATAA
1 TGATAA
111452850 GAATTTCATG
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 107 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:111454510 original size:27 final size:27
Alignment explanation
Indices: 111454469--111454581 Score: 147
Period size: 27 Copynumber: 4.2 Consensus size: 27
111454459 GAGGAAGCGT
*
111454469 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
111454496 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
111454523 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
111454551 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
111454577 TCTGG
1 TCTGG
111454582 CAGCCATGCT
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 16 0.20
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:111458816 original size:25 final size:27
Alignment explanation
Indices: 111458788--111458844 Score: 66
Period size: 25 Copynumber: 2.2 Consensus size: 27
111458778 CAAAAATTTA
*
111458788 AAAATTATT-AATGATTTAAT-AAATT
1 AAAATTATTAAATGATTAAATAAAATT
* *
111458813 AAAA-AATTAAATTATTAAATAAAATT
1 AAAATTATTAAATGATTAAATAAAATT
111458839 AAAATT
1 AAAATT
111458845 TAGGAGAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
24 3 0.12
25 13 0.52
26 9 0.36
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.39
Consensus pattern (27 bp):
AAAATTATTAAATGATTAAATAAAATT
Found at i:111458837 original size:26 final size:27
Alignment explanation
Indices: 111458780--111458842 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
111458770 TATTTTCTCA
* *
111458780 AAAATTTAAAAATTATTAATGATTTAAT
1 AAAATTAAAAAATTA-TAATGATTAAAT
*
111458808 -AAATTAAAAAATTA-AATTATTAAAT
1 AAAATTAAAAAATTATAATGATTAAAT
111458833 AAAATTAAAA
1 AAAATTAAAA
111458843 TTTAGGAGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
25 9 0.29
26 9 0.29
27 13 0.42
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (27 bp):
AAAATTAAAAAATTATAATGATTAAAT
Found at i:111459420 original size:17 final size:18
Alignment explanation
Indices: 111459393--111459426 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
111459383 AATTAAATAT
111459393 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
111459411 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
111459427 TAAACAAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:111459634 original size:28 final size:24
Alignment explanation
Indices: 111459609--111459659 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
111459599 CTATATAAGG
111459609 TTGATAATAATTAATATATATTATAA
1 TTGAT-ATAATT-ATATATATTATAA
*
111459635 TTGATATAATTATATAT-TAATAA
1 TTGATATAATTATATATATTATAA
111459658 TT
1 TT
111459660 ATTATCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 7 0.29
24 6 0.25
25 6 0.25
26 5 0.21
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (24 bp):
TTGATATAATTATATATATTATAA
Done.