Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 358 of 433
Found at i:112466815 original size:17 final size:17
Alignment explanation
Indices: 112466788--112466887 Score: 61
Period size: 17 Copynumber: 5.9 Consensus size: 17
112466778 AAATAGAATG
112466788 TTTATATATTAAATTAAA
1 TTTA-ATATTAAATTAAA
112466806 TTTAATATTAAGA-TAATCA
1 TTTAATATTAA-ATTAA--A
112466825 CTTTAATATTAAATT-AA
1 -TTTAATATTAAATTAAA
* * *
112466842 -TAAATACT--GTTAAGA
1 TTTAATATTAAATTAA-A
112466857 --TAAGTATTAAATTAAA
1 TTTAA-TATTAAATTAAA
112466873 TTTAATATTAAATTA
1 TTTAATATTAAATTA
112466888 TTAAAATAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 25
0.67 0.06 0.26
Matches are distributed among these distances:
13 2 0.03
14 3 0.05
15 10 0.16
16 1 0.02
17 25 0.39
18 8 0.12
19 3 0.05
20 12 0.19
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.44
Consensus pattern (17 bp):
TTTAATATTAAATTAAA
Found at i:112466842 original size:20 final size:18
Alignment explanation
Indices: 112466788--112466843 Score: 62
Period size: 20 Copynumber: 3.0 Consensus size: 18
112466778 AAATAGAATG
112466788 TTTATATATTAAATTAA-A
1 TTTA-ATATTAAATTAATA
112466806 TTTAATATTAAGA-TAATCA
1 TTTAATATTAA-ATTAAT-A
112466825 CTTTAATATTAAATTAATA
1 -TTTAATATTAAATTAATA
112466844 AATACTGTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
17 10 0.30
18 5 0.15
19 3 0.09
20 15 0.45
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (18 bp):
TTTAATATTAAATTAATA
Found at i:112467636 original size:17 final size:18
Alignment explanation
Indices: 112467604--112467638 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
112467594 GATATGATAC
*
112467604 TAAAATTATTAAAAAAAT
1 TAAAATTATAAAAAAAAT
112467622 TAAAA-TATAAAAAAAAT
1 TAAAATTATAAAAAAAAT
112467639 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAAATTATAAAAAAAAT
Found at i:112467927 original size:22 final size:21
Alignment explanation
Indices: 112467892--112467967 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
112467882 AAAAGGTATC
* *
112467892 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
112467913 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
112467936 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
112467955 TGC-AATCATATCT
1 TACAAATCATATCT
112467968 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:112467952 original size:19 final size:19
Alignment explanation
Indices: 112467928--112468018 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
112467918 AATCATATCT
112467928 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
112467947 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
112467965 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
112467982 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
112468001 TCTAAGATTGCCTATCAT
1 TCTAAGATTGCATATCAT
112468019 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:112467984 original size:35 final size:37
Alignment explanation
Indices: 112467921--112468010 Score: 143
Period size: 35 Copynumber: 2.5 Consensus size: 37
112467911 ATTACAAAAT
112467921 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
112467957 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
112467992 CATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
112468011 CCTATCATTG
Statistics
Matches: 51, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
35 22 0.43
36 19 0.37
37 10 0.20
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:112467997 original size:14 final size:15
Alignment explanation
Indices: 112467942--112467997 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
112467932 AGATTGCATA
112467942 TCATATCTAAGATTG
1 TCATATCTAAGATTG
112467957 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
112467975 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
112467992 -CATATC
1 TCATATC
112467998 ATATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:112468432 original size:45 final size:45
Alignment explanation
Indices: 112468366--112468565 Score: 249
Period size: 45 Copynumber: 4.5 Consensus size: 45
112468356 GGAAGGCGAT
* * * *
112468366 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACACCAA
1 ATCTGTTATCTTCGATTTGCTCCCCGTCTAATACAGAGACGCCAA
112468411 ATCTGTTATCTTCGATTTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATTTGCTCCCCGTCTAATACAGAGACGCCAA
** * * * * *
112468456 ATCTACT-TCTTCAATCTGTTCCCCGTCTAATACAGAGATGCTAA
1 ATCTGTTATCTTCGATTTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
112468500 ATCTGTTATCTCCGATTTGCTCCCTGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATTTGCTCCCCGTCTAATACAGAGACGCCAA
* *
112468545 ATCTGTCATCTTGGATTTGCT
1 ATCTGTTATCTTCGATTTGCT
112468566 TCGATGTAAA
Statistics
Matches: 132, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
44 37 0.28
45 95 0.72
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (45 bp):
ATCTGTTATCTTCGATTTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:112468502 original size:89 final size:89
Alignment explanation
Indices: 112468380--112468548 Score: 275
Period size: 89 Copynumber: 1.9 Consensus size: 89
112468370 GCTATCTTTG
*
112468380 ATCTGCTCCCCGTCTAATACAGAGACACCAAATCTGTTATCTTCGATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGACACCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATAC
112468445 AGAGACGCCAAATCTACTTCTTCA
66 AGAGACGCCAAATCTACTTCTTCA
* ** * *
112468469 ATCTGTTCCCCGTCTAATACAGAGATGCTAAATCTGTTATCTCCGATTTGCTCCCTGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGACACCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATAC
*
112468534 AGAGATGCCAAATCT
66 AGAGACGCCAAATCT
112468549 GTCATCTTGG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
89 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.31
Consensus pattern (89 bp):
ATCTGCTCCCCGTCTAATACAGAGACACCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATAC
AGAGACGCCAAATCTACTTCTTCA
Found at i:112468708 original size:78 final size:78
Alignment explanation
Indices: 112468579--112468848 Score: 454
Period size: 78 Copynumber: 3.5 Consensus size: 78
112468569 ATGTAAACAC
* * *
112468579 ATGAAGGTCAGATCTACTATGTCTTCGATTTGCTCCCCGTCTAATACAGAGATGTCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
112468644 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
112468657 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCATATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
112468721 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
112468735 ATGAAGGTCAGATCTG-TAGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGTCAGATCTGCTA-TGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
112468799 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
112468813 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCC
112468849 TTGTCAACGC
Statistics
Matches: 180, Mismatches: 8, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
77 4 0.02
78 172 0.96
79 4 0.02
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:112480843 original size:22 final size:21
Alignment explanation
Indices: 112480808--112480883 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
112480798 AAAAGGTATC
* *
112480808 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
112480829 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
112480852 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
112480871 TGC-AATCATATCT
1 TACAAATCATATCT
112480884 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:112480868 original size:19 final size:19
Alignment explanation
Indices: 112480844--112480934 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
112480834 AATCATATCT
112480844 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
112480863 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
112480881 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
112480898 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
112480917 TCTAAGATTGCCTATCAT
1 TCTAAGATTGCATATCAT
112480935 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:112480900 original size:35 final size:37
Alignment explanation
Indices: 112480837--112480926 Score: 143
Period size: 35 Copynumber: 2.5 Consensus size: 37
112480827 ATTACAAAAT
112480837 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
112480873 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
112480908 CATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
112480927 CCTATCATTG
Statistics
Matches: 51, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
35 22 0.43
36 19 0.37
37 10 0.20
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:112480913 original size:14 final size:15
Alignment explanation
Indices: 112480858--112480913 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
112480848 AGATTGCATA
112480858 TCATATCTAAGATTG
1 TCATATCTAAGATTG
112480873 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
112480891 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
112480908 -CATATC
1 TCATATC
112480914 ATATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:112482210 original size:14 final size:15
Alignment explanation
Indices: 112482176--112482205 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
112482166 AAAGCCATGC
*
112482176 AAAATATAAAAGACA
1 AAAATAAAAAAGACA
112482191 AAAATAAAAAAGACA
1 AAAATAAAAAAGACA
112482206 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.07, G:0.07, T:0.10
Consensus pattern (15 bp):
AAAATAAAAAAGACA
Found at i:112483266 original size:45 final size:45
Alignment explanation
Indices: 112483174--112483347 Score: 278
Period size: 45 Copynumber: 3.9 Consensus size: 45
112483164 CCGAATTCAT
* * *
112483174 TCACCGGCATTATAGCCTGCTAGGCTC-GAGGCCCGAATAATGTC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
112483218 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
112483263 TCACCAGCATTATAGCCTGCTAGGGTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
112483308 TCACCGGCATTATAGCCTGCTAGGCTCAAAGACCTGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
112483348 CAATATTCAA
Statistics
Matches: 120, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
44 27 0.22
45 93 0.77
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:112492410 original size:43 final size:43
Alignment explanation
Indices: 112492344--112492429 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 43
112492334 AAGTTGTACA
*
112492344 ATGCCAACGTCCCAGACGTGGTCTTACAT-GTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTAC-TCGTAAACACATATCG
112492387 ATGCC-ACTGTCCCAGACAG-GGTCTTACTCGTAAACACATATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACTCGTAAACACATATCG
112492430 GAATCACATA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
42 3 0.08
43 35 0.90
44 1 0.03
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACTCGTAAACACATATCG
Found at i:112493618 original size:15 final size:15
Alignment explanation
Indices: 112493598--112493630 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
112493588 TAAATCACGA
112493598 AAATTT-CACAAATAT
1 AAATTTACACAAA-AT
112493613 AAATTTACACAAAAT
1 AAATTTACACAAAAT
112493628 AAA
1 AAA
112493631 CATAGAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.61, C:0.12, G:0.00, T:0.27
Consensus pattern (15 bp):
AAATTTACACAAAAT
Found at i:112495371 original size:58 final size:56
Alignment explanation
Indices: 112495222--112495372 Score: 146
Period size: 57 Copynumber: 2.6 Consensus size: 56
112495212 ATCGTATAAC
* *
112495222 AGGATTAGTAGTCCAGGCTAAATCCTTTATATAACATATGCTCAGAGGAGCTTGATT
1 AGGATTACTAGTCCAGGATAAATCCTTTATATAACATATGCTCAGAGGA-CTTGATT
* * * *
112495279 AGGATTACTAGTCCAGGCTAAA-CCCTAATCATAACGTATGCTCGAGAGGTA-TT-ATAT
1 AGGATTACTAGTCCAGGATAAATCCTTTAT-ATAACATATGCTC-AGAGG-ACTTGAT-T
* * *
112495336 CAGGATTACTTGTTCGGGATAAATCCTTTATATAACA
1 -AGGATTACTAGTCCAGGATAAATCCTTTATATAACA
112495373 AGGTCAATGG
Statistics
Matches: 77, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
56 7 0.09
57 36 0.47
58 28 0.36
59 6 0.08
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31
Consensus pattern (56 bp):
AGGATTACTAGTCCAGGATAAATCCTTTATATAACATATGCTCAGAGGACTTGATT
Found at i:112498282 original size:35 final size:35
Alignment explanation
Indices: 112498086--112498264 Score: 207
Period size: 35 Copynumber: 5.1 Consensus size: 35
112498076 CATGATTCAC
* * * *
112498086 AACTCAGTATGGTTAATACCATACCTACGTTTTAC
1 AACTCAGTATGGATAATACCATACCTACGTATCAT
* *
112498121 AACTCAGTTTGGGA-AATACCATACCTACGTATTAT
1 AACTCAGTAT-GGATAATACCATACCTACGTATCAT
* * * ** *
112498156 AGCTCGGTATAGAGGATACCATTCCTACGTATCAT
1 AACTCAGTATGGATAATACCATACCTACGTATCAT
* *
112498191 AACTCAATATGGAAAATACCATACCTACGTATCAT
1 AACTCAGTATGGATAATACCATACCTACGTATCAT
*
112498226 AACTCAGTATGGATAATACCATACCTACGTGTCAT
1 AACTCAGTATGGATAATACCATACCTACGTATCAT
112498261 AACT
1 AACT
112498265 TTTCCATGGA
Statistics
Matches: 121, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
34 2 0.02
35 117 0.97
36 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (35 bp):
AACTCAGTATGGATAATACCATACCTACGTATCAT
Found at i:112503791 original size:22 final size:22
Alignment explanation
Indices: 112503766--112503810 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
112503756 GTAGAATATG
112503766 AAAGGTTGTTGACAAATAAACT
1 AAAGGTTGTTGACAAATAAACT
112503788 AAAGGTTGTTGACAAATAAACT
1 AAAGGTTGTTGACAAATAAACT
112503810 A
1 A
112503811 CTTTTACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.09, G:0.18, T:0.27
Consensus pattern (22 bp):
AAAGGTTGTTGACAAATAAACT
Found at i:112507893 original size:28 final size:28
Alignment explanation
Indices: 112507861--112507917 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
112507851 CACTGGTAGG
*
112507861 CACATGGACGTGT-GTCTTGGCCGTGTGT
1 CACATGGACATGTGGT-TTGGCCGTGTGT
*
112507889 CACATGGGCATGTGGTTTGGCCGTGTGT
1 CACATGGACATGTGGTTTGGCCGTGTGT
112507917 C
1 C
112507918 CCTTGCATCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 24 0.92
29 2 0.08
ACGTcount: A:0.11, C:0.21, G:0.37, T:0.32
Consensus pattern (28 bp):
CACATGGACATGTGGTTTGGCCGTGTGT
Found at i:112508475 original size:14 final size:14
Alignment explanation
Indices: 112508458--112508487 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
112508448 ATACATGAAA
112508458 ATCAAGCTCCCAAG
1 ATCAAGCTCCCAAG
112508472 ATCAAGCTCCCAAG
1 ATCAAGCTCCCAAG
112508486 AT
1 AT
112508488 TAAATTTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.33, G:0.13, T:0.17
Consensus pattern (14 bp):
ATCAAGCTCCCAAG
Found at i:112513439 original size:18 final size:18
Alignment explanation
Indices: 112513393--112513440 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
112513383 TGTAGGTGAG
112513393 CCCCCTTGCATG-CAAAC
1 CCCCCTTGCATGTCAAAC
*
112513410 CCCCCTTTCATGTACAAA-
1 CCCCCTTGCATGT-CAAAC
*
112513428 CCTCCTTGCATGT
1 CCCCCTTGCATGT
112513441 GCAAGCCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 11 0.42
18 11 0.42
19 4 0.15
ACGTcount: A:0.21, C:0.42, G:0.10, T:0.27
Consensus pattern (18 bp):
CCCCCTTGCATGTCAAAC
Found at i:112513640 original size:23 final size:23
Alignment explanation
Indices: 112513570--112513650 Score: 83
Period size: 23 Copynumber: 3.6 Consensus size: 23
112513560 CTGTTAGGAT
*
112513570 ATGCGAACCCTATCTACTATTAC
1 ATGCGAACCCTATCTACTATGAC
* * * ** *
112513593 ATACAAACCCTAACTGTTTTG-C
1 ATGCGAACCCTATCTACTATGAC
*
112513615 ATGCGAACCATATCTACTATGAC
1 ATGCGAACCCTATCTACTATGAC
112513638 ATGCGAACCCTAT
1 ATGCGAACCCTAT
112513651 ATGTATACGC
Statistics
Matches: 42, Mismatches: 15, Indels: 2
0.71 0.25 0.03
Matches are distributed among these distances:
22 15 0.36
23 27 0.64
ACGTcount: A:0.32, C:0.28, G:0.11, T:0.28
Consensus pattern (23 bp):
ATGCGAACCCTATCTACTATGAC
Found at i:112513806 original size:15 final size:15
Alignment explanation
Indices: 112513770--112513867 Score: 96
Period size: 14 Copynumber: 6.8 Consensus size: 15
112513760 TAAACATGCA
*
112513770 AACCC-ATATATGCG
1 AACCCTATATGTGCG
*
112513784 AA-CCTATATGTACG
1 AACCCTATATGTGCG
*
112513798 AACCCTATATGTGCA
1 AACCCTATATGTGCG
*
112513813 AACCTTATATGTGCG
1 AACCCTATATGTGCG
* **
112513828 AACCC-CTATGTGTA
1 AACCCTATATGTGCG
*
112513842 AACCC-ATATGTGTG
1 AACCCTATATGTGCG
112513856 AACCCTATATGT
1 AACCCTATATGT
112513868 TAATTAAAAC
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
13 2 0.03
14 34 0.49
15 33 0.48
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (15 bp):
AACCCTATATGTGCG
Found at i:112513858 original size:28 final size:29
Alignment explanation
Indices: 112513770--112513860 Score: 87
Period size: 29 Copynumber: 3.2 Consensus size: 29
112513760 TAAACATGCA
* * * *
112513770 AACCCATATATGCGAACCT-ATATGTACG
1 AACCCCTATGTGCAAACCTCATATGTGCG
* *
112513798 AACCCTATATGTGCAAACCTTATATGTGCG
1 AACCC-CTATGTGCAAACCTCATATGTGCG
* *
112513828 AACCCCTATGTGTAAACC-CATATGTGTG
1 AACCCCTATGTGCAAACCTCATATGTGCG
112513856 AACCC
1 AACCC
112513861 TATATGTTAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
28 18 0.33
29 23 0.43
30 13 0.24
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (29 bp):
AACCCCTATGTGCAAACCTCATATGTGCG
Found at i:112516621 original size:49 final size:49
Alignment explanation
Indices: 112516548--112516684 Score: 154
Period size: 49 Copynumber: 2.8 Consensus size: 49
112516538 TTTTATTTAT
*
112516548 AGGTTGAAAAACCTTA-TTATAATCAATGTCAAATATAAAG-AGCGTAGTA
1 AGGTTGAAAAACCTTATTTA-AATCAATATCAAATA-AAAGAAGCGTAGTA
* * * * *
112516597 AGGTTGAAACACCTTATTTAAATCACTATCAAATAGATGAAGTGTAGTA
1 AGGTTGAAAAACCTTATTTAAATCAATATCAAATAAAAGAAGCGTAGTA
* *
112516646 AGGTTGAAAAACCTTATTCT-AATCAAAATAAAATAAAAG
1 AGGTTGAAAAACCTTATT-TAAATCAATATCAAATAAAAG
112516685 TGTAGTTCTA
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
48 2 0.03
49 67 0.92
50 4 0.05
ACGTcount: A:0.46, C:0.11, G:0.15, T:0.28
Consensus pattern (49 bp):
AGGTTGAAAAACCTTATTTAAATCAATATCAAATAAAAGAAGCGTAGTA
Found at i:112521137 original size:49 final size:49
Alignment explanation
Indices: 112521065--112521234 Score: 234
Period size: 49 Copynumber: 3.5 Consensus size: 49
112521055 TATTTATAGT
112521065 TTGAAAAACCTTATTCTAATCAACGTAAAATAGAATGAGTCTAGTAAGG
1 TTGAAAAACCTTATTCTAATCAACGTAAAATAGAATGAGTCTAGTAAGG
* *
112521114 TTGAAACACCTTATTCTAATCAACGTAAAATAGAGTGAGTCTAGTAAGG
1 TTGAAAAACCTTATTCTAATCAACGTAAAATAGAATGAGTCTAGTAAGG
* * * ** * *
112521163 TCGAAACACCTTAGTCTAATCAATATTAAATAG-ATGAAGTGTAGTAAGG
1 TTGAAAAACCTTATTCTAATCAACGTAAAATAGAATG-AGTCTAGTAAGG
*
112521212 TTGAAAAACCATATTCTAATCAA
1 TTGAAAAACCTTATTCTAATCAA
112521235 AATAAAAGAA
Statistics
Matches: 107, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
48 2 0.02
49 105 0.98
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.29
Consensus pattern (49 bp):
TTGAAAAACCTTATTCTAATCAACGTAAAATAGAATGAGTCTAGTAAGG
Found at i:112523355 original size:40 final size:40
Alignment explanation
Indices: 112523262--112523458 Score: 263
Period size: 40 Copynumber: 5.0 Consensus size: 40
112523252 CGGAATTTAG
* ** *
112523262 CCGGATATAACCACAAGCACAATTGCCTTC-GGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* * *
112523301 CCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
112523341 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* *
112523381 CCGGATATAGCAACTCGCAAAAATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* * *
112523421 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGGCTTA
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTA
112523459 GCTCGGGTAT
Statistics
Matches: 140, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 24 0.17
40 115 0.82
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
Found at i:112524160 original size:38 final size:38
Alignment explanation
Indices: 112524109--112524201 Score: 186
Period size: 38 Copynumber: 2.4 Consensus size: 38
112524099 GGCTACCTAA
112524109 GGCCGAACATACACATCAACATATGTACTCATTCATGT
1 GGCCGAACATACACATCAACATATGTACTCATTCATGT
112524147 GGCCGAACATACACATCAACATATGTACTCATTCATGT
1 GGCCGAACATACACATCAACATATGTACTCATTCATGT
112524185 GGCCGAACATACACATC
1 GGCCGAACATACACATC
112524202 TATGTTGAGG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 55 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (38 bp):
GGCCGAACATACACATCAACATATGTACTCATTCATGT
Found at i:112529362 original size:29 final size:29
Alignment explanation
Indices: 112529305--112529361 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
112529295 GATTTTTTAC
112529305 AATATTTACAAAAAGAGATAGTTAATTTT
1 AATATTTACAAAAAGAGATAGTTAATTTT
*
112529334 AATATTTATAAAAAGA-ATAGTTAATTTT
1 AATATTTACAAAAAGAGATAGTTAATTTT
112529362 TGTAAATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 12 0.44
29 15 0.56
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (29 bp):
AATATTTACAAAAAGAGATAGTTAATTTT
Found at i:112536073 original size:46 final size:46
Alignment explanation
Indices: 112536006--112536098 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
112535996 TCATCATGAA
112536006 ACACTTCATCGGGAAATCCAGAATCATTCAAGACATAAATCTATTT
1 ACACTTCATCGGGAAATCCAGAATCATTCAAGACATAAATCTATTT
112536052 ACACTTCATCGGGAAATCCAGAATCATTCAAGACATAAATCTATTT
1 ACACTTCATCGGGAAATCCAGAATCATTCAAGACATAAATCTATTT
112536098 A
1 A
112536099 TCTTATTATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.28
Consensus pattern (46 bp):
ACACTTCATCGGGAAATCCAGAATCATTCAAGACATAAATCTATTT
Found at i:112555805 original size:16 final size:16
Alignment explanation
Indices: 112555786--112555820 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
112555776 AATAAAACTC
*
112555786 CAACTAAATATAGTAT
1 CAACTAAATATAATAT
112555802 CAACTAAATATAATAT
1 CAACTAAATATAATAT
112555818 CAA
1 CAA
112555821 TGGTATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.54, C:0.14, G:0.03, T:0.29
Consensus pattern (16 bp):
CAACTAAATATAATAT
Found at i:112559121 original size:2 final size:2
Alignment explanation
Indices: 112559114--112559158 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
112559104 ATTCATTTAC
112559114 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
112559156 TA T
1 TA T
112559159 TCATATTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:112560747 original size:3 final size:3
Alignment explanation
Indices: 112560739--112560788 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
112560729 CTACTTTTTA
112560739 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
112560787 AT
1 AT
112560789 TATTATTATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:112569895 original size:2 final size:2
Alignment explanation
Indices: 112569888--112569914 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
112569878 ATTAACTGGA
112569888 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
112569915 GAGAGAGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:112569919 original size:2 final size:2
Alignment explanation
Indices: 112569914--112569940 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
112569904 ATATATATAT
112569914 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
112569941 AACAAAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:112570397 original size:14 final size:15
Alignment explanation
Indices: 112570378--112570410 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
112570368 TTATTTGCAT
112570378 GTTTAGA-GCTTAGG
1 GTTTAGATGCTTAGG
*
112570392 GTTTAGATGTTTAGG
1 GTTTAGATGCTTAGG
112570407 GTTT
1 GTTT
112570411 TGGGGTTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.18, C:0.03, G:0.33, T:0.45
Consensus pattern (15 bp):
GTTTAGATGCTTAGG
Found at i:112570419 original size:22 final size:22
Alignment explanation
Indices: 112570376--112570419 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
112570366 GGTTATTTGC
*
112570376 ATGTTTAGAGCTTAGGGTTTAG
1 ATGTTTAGAGCTTAGGGGTTAG
* * *
112570398 ATGTTTAGGGTTTTGGGGTTAG
1 ATGTTTAGAGCTTAGGGGTTAG
112570420 GATTTTTATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.18, C:0.02, G:0.36, T:0.43
Consensus pattern (22 bp):
ATGTTTAGAGCTTAGGGGTTAG
Found at i:112570519 original size:28 final size:28
Alignment explanation
Indices: 112570454--112570617 Score: 90
Period size: 28 Copynumber: 5.6 Consensus size: 28
112570444 TTTTATATAT
112570454 TTAGTGTTTAGGATTTTGAAGAAAATAAA
1 TTAGTGTTTAGGATTTT-AAGAAAATAAA
*
112570483 TTAGGGTTTTAGGATTTT-A-AAAATCAAA
1 TTAGTG-TTTAGGATTTTAAGAAAAT-AAA
* *
112570511 TTAGTGTTTATGATTTTTTTAAAAATAAATTAAA
1 TTAGTGTTTAGGA---TTTT-AAGA-AAA-TAAA
112570545 TTA-TGATTT-GTTG-TTTATAA-AAAATAAA
1 TTAGTG-TTTAG--GATTT-TAAGAAAATAAA
* *
112570573 TTAGGGTTTAGGGATTTTTA-AAAATAAA
1 TTAGTGTTTA-GGATTTTAAGAAAATAAA
* *
112570601 TTTGTGTTTAGGGTTTT
1 TTAGTGTTTAGGATTTT
112570618 TGTAAGTCTT
Statistics
Matches: 108, Mismatches: 9, Indels: 38
0.70 0.06 0.25
Matches are distributed among these distances:
27 17 0.16
28 38 0.35
29 12 0.11
30 17 0.16
31 5 0.05
32 2 0.02
33 3 0.03
34 12 0.11
35 2 0.02
ACGTcount: A:0.37, C:0.01, G:0.17, T:0.45
Consensus pattern (28 bp):
TTAGTGTTTAGGATTTTAAGAAAATAAA
Found at i:112570986 original size:125 final size:124
Alignment explanation
Indices: 112570687--112571324 Score: 640
Period size: 125 Copynumber: 5.1 Consensus size: 124
112570677 GTTCAGTCAA
* * * * * *
112570687 CAAAAGTACTAAAACAAGCTCTCAGACGGATGCTATTTTTATACAGTAATTTCTG-AAAAATAAT
1 CAAAAGTACTAAAA-AAGCTCTCACATGGACGCTCTTTTTCTACAGTAGTTTCTGAAAAAATAAT
* * * *
112570751 TTTAAGAAGATGGTTCTGAAAAATAGGGT-AAAAACGCTTTAAGCAGGATGCACTATCAG
65 TTTGAGAAGATGATTCTGAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTATCAG
* * * * ** * *
112570810 CAAAAGTAGTGAAAAAAGCTC-CTACCTGGACTCTCGTTTTCTACAACAGTTTTTGAAAAGATAA
1 CAAAAGTACT-AAAAAAGCTCTC-ACATGGACGCTCTTTTTCTACAGTAGTTTCTGAAAAAATAA
** * * * * * * * *
112570874 TTTTTTGAGGATGATTATGAAAAAATAGGGCCAAAAACGCTTCAAACAGGATGCCCTTTTAG
64 TTTTGAGAAGATGATTCTG-AAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTATCAG
* * * *
112570936 CAAAAGTACTTAAAAAGCTCTCACATGGAAGCTATTTTTCTACAGTAGTTTCTGAAAATATAATT
1 CAAAAGTACTAAAAAAGCTCTCACATGGACGCTCTTTTTCTACAGTAGTTTCTGAAAAAATAATT
* * * * * * *
112571001 TCGAGAAGATGGTTTTGAAAAATAGTGTAAAAAACGCTTCAAGCAGGATTCACTGTCAA
66 TTGAGAAGATGATTCTGAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTATCAG
* * * * *
112571060 CAAAAATACTGAAAAAAAGCT-TCCACCTAGACGCTCTTTTTTTACAATAGTTTCTGAAAAAATA
1 CAAAAGTACT--AAAAAAGCTCT-CACATGGACGCTCTTTTTCTACAGTAGTTTCTGAAAAAATA
* * *
112571124 ATTTTGAGAAAATGATTCTGAAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTTAG
63 ATTTTGAGAAGATGATTCTG-AAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTATCAG
* * * *
112571187 CAAAAGTACTGAAAAAGCTC-CA-AGTTGGATGCTCTTTTTCCATAGTAGTTTCTGAAAAAATAA
1 CAAAAGTACTAAAAAAGCTCTCACA--TGGACGCTCTTTTTCTACAGTAGTTTCTGAAAAAATAA
* * * *
112571250 TTCTGAGAAGATGATTTTGAAAAATAGTGTCAAAAACGCTTTAAACAGGATGCACTATCAG
64 TTTTGAGAAGATGATTCTGAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTATCAG
*
112571311 TAAAAGTACTAAAA
1 CAAAAGTACTAAAA
112571325 TTATGAAAAC
Statistics
Matches: 416, Mismatches: 86, Indels: 25
0.79 0.16 0.05
Matches are distributed among these distances:
122 1 0.00
123 35 0.08
124 119 0.29
125 121 0.29
126 93 0.22
127 47 0.11
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (124 bp):
CAAAAGTACTAAAAAAGCTCTCACATGGACGCTCTTTTTCTACAGTAGTTTCTGAAAAAATAATT
TTGAGAAGATGATTCTGAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTATCAG
Found at i:112571149 original size:14 final size:14
Alignment explanation
Indices: 112571111--112571151 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
112571101 TTACAATAGT
112571111 TTCTGAAAAAATAA
1 TTCTGAAAAAATAA
* * *
112571125 TTTTGAGAAAATGA
1 TTCTGAAAAAATAA
112571139 TTCTGAAAAAATA
1 TTCTGAAAAAATA
112571152 GTGTCAAAAA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.51, C:0.05, G:0.12, T:0.32
Consensus pattern (14 bp):
TTCTGAAAAAATAA
Found at i:112571189 original size:251 final size:247
Alignment explanation
Indices: 112570687--112571309 Score: 775
Period size: 251 Copynumber: 2.5 Consensus size: 247
112570677 GTTCAGTCAA
* * *
112570687 CAAAAGTACTAAAACAAGCTCTCAGACGGATGCTATTTTTATACAGTAATTTCTGAAAAATAATT
1 CAAAAGTACTAAAA-AAGCTCTCA-ATGGATGCTATTTTTCTACAGTAGTTTCTGAAAAATAATT
** * * * *
112570752 TTAAGAAGATGGTTCTGAAAAATAGGGTAAAAACGCTTTAAGCAGGATGCACTATCAGCAAAAGT
64 TCGAGAAGATGGTTTTGAAAAATAGTGTAAAAACGCTTTAAGCAGGATGCACTATCAACAAAAAT
* * * * * **
112570817 AGTGAAAAAAGCTCCTACCTGGACTCTCGTTTTCTACAACAGTTTTTGAAAAGATAATTTTTTGA
129 ACTGAAAAAAGCTCCTACCTAGACGCTCGTTTTCTACAACAGTTTCTGAAAAAATAATTTTGAGA
** * *
112570882 GGATGATTATGAAAAAATAGGGCCAAAAACGCTTCAAACAGGATGCCCTTTTAG
194 AAATGATTATGAAAAAATAGGGCCAAAAACGCTTCAAACAGGATGCACTGTTAG
* *
112570936 CAAAAGTACTTAAAAAGCTCTCACATGGAAGCTATTTTTCTACAGTAGTTTCTGAAAATATAATT
1 CAAAAGTACTAAAAAAGCTCTCA-ATGGATGCTATTTTTCTACAGTAGTTTCTGAAAA-ATAATT
* * *
112571001 TCGAGAAGATGGTTTTGAAAAATAGTGTAAAAAACGCTTCAAGCAGGATTCACTGTCAACAAAAA
64 TCGAGAAGATGGTTTTGAAAAATAGTGT-AAAAACGCTTTAAGCAGGATGCACTATCAACAAAAA
* * *
112571066 TACTGAAAAAAAGCTTCC-ACCTAGACGCTCTTTTTTTACAATAGTTTCTGAAAAAATAATTTTG
128 TACTG-AAAAAAGC-TCCTACCTAGACGCTCGTTTTCTACAACAGTTTCTGAAAAAATAATTTTG
* * * *
112571130 AGAAAATGATTCTGAAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTTAG
191 AGAAAATGATTATGAAAAAATAGGGCCAAAAACGCTTCAAACAGGATGCACTGTTAG
* * * *
112571187 CAAAAGTACTGAAAAAGCTC-CAAGTTGGATGCTCTTTTTCCATAGTAGTTTCTGAAAAAATAA-
1 CAAAAGTACTAAAAAAGCTCTCAA--TGGATGCTATTTTTCTACAGTAGTTTCTG-AAAAATAAT
* *
112571250 TTCTGAGAAGATGATTTTGAAAAATAGTGTCAAAAACGCTTTAAACAGGATGCACTATCA
63 TTC-GAGAAGATGGTTTTGAAAAATAGTGT-AAAAACGCTTTAAGCAGGATGCACTATCA
112571310 GTAAAAGTAC
Statistics
Matches: 322, Mismatches: 44, Indels: 14
0.85 0.12 0.04
Matches are distributed among these distances:
248 39 0.12
249 44 0.14
250 40 0.12
251 192 0.60
252 7 0.02
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (247 bp):
CAAAAGTACTAAAAAAGCTCTCAATGGATGCTATTTTTCTACAGTAGTTTCTGAAAAATAATTTC
GAGAAGATGGTTTTGAAAAATAGTGTAAAAACGCTTTAAGCAGGATGCACTATCAACAAAAATAC
TGAAAAAAGCTCCTACCTAGACGCTCGTTTTCTACAACAGTTTCTGAAAAAATAATTTTGAGAAA
ATGATTATGAAAAAATAGGGCCAAAAACGCTTCAAACAGGATGCACTGTTAG
Found at i:112575038 original size:40 final size:40
Alignment explanation
Indices: 112574930--112575139 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
112574920 CGGGATTTAA
* * * * *
112574930 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
112574970 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
112575010 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
112575050 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
112575090 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
112575130 CCGGATATAT
1 CCGGATATAT
112575140 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:112581610 original size:29 final size:29
Alignment explanation
Indices: 112581578--112581680 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
112581568 GTGACGAGAT
* *
112581578 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
112581607 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
112581636 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
112581665 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
112581681 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:112589598 original size:29 final size:29
Alignment explanation
Indices: 112589566--112589668 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
112589556 ATGACGAGAT
* *
112589566 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
112589595 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
112589624 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
112589653 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
112589669 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:112595302 original size:21 final size:21
Alignment explanation
Indices: 112595278--112595343 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 21
112595268 GTCTTGAATT
*
112595278 TGTTAGATATTGAATTTATTA
1 TGTTAGATGTTGAATTTATTA
*
112595299 TGTTTTAAGCTTGTTGAATTTATTA
1 TG--TT-AG-ATGTTGAATTTATTA
112595324 TGTTAGATGTTGAATTTATT
1 TGTTAGATGTTGAATTTATT
112595344 TGGTTGGATA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
21 15 0.39
22 2 0.05
23 4 0.11
24 2 0.05
25 15 0.39
ACGTcount: A:0.27, C:0.02, G:0.17, T:0.55
Consensus pattern (21 bp):
TGTTAGATGTTGAATTTATTA
Found at i:112596635 original size:26 final size:26
Alignment explanation
Indices: 112596599--112596651 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
112596589 GCAATATATG
* *
112596599 TAAAAACAATTTAAAGTATAAATTTA
1 TAAAAAAAATTTAAAATATAAATTTA
112596625 TAAAAAAAATTTAAAATATAAATTTA
1 TAAAAAAAATTTAAAATATAAATTTA
112596651 T
1 T
112596652 TAATATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (26 bp):
TAAAAAAAATTTAAAATATAAATTTA
Found at i:112604206 original size:21 final size:21
Alignment explanation
Indices: 112604180--112604230 Score: 86
Period size: 21 Copynumber: 2.4 Consensus size: 21
112604170 CCAAGCAGAG
112604180 CAGGCCAAGACCAGAAGCTGC
1 CAGGCCAAGACCAGAAGCTGC
112604201 CAGGCCAAGACCAGAAGCTGC
1 CAGGCCAAGACCAGAAGCTGC
112604222 C-GAGCCAAG
1 CAG-GCCAAG
112604231 TGCAGCAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 1 0.03
21 28 0.97
ACGTcount: A:0.33, C:0.33, G:0.29, T:0.04
Consensus pattern (21 bp):
CAGGCCAAGACCAGAAGCTGC
Found at i:112610618 original size:2 final size:2
Alignment explanation
Indices: 112610611--112610635 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
112610601 TGCCATTAGC
112610611 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
112610636 GAATACAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:112611903 original size:20 final size:22
Alignment explanation
Indices: 112611864--112611903 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
112611854 AACACTAGGT
*
112611864 AATTTGAACATTTTATGACTAA
1 AATTTGAACATTTTACGACTAA
112611886 AATTT-AACA-TTTACGACT
1 AATTTGAACATTTTACGACT
112611904 TATTAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 4 0.24
22 5 0.29
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.40
Consensus pattern (22 bp):
AATTTGAACATTTTACGACTAA
Found at i:112616683 original size:40 final size:40
Alignment explanation
Indices: 112616610--112616817 Score: 186
Period size: 40 Copynumber: 5.2 Consensus size: 40
112616600 CAATTGAATG
* * * * * *
112616610 ATATTCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * * *
112616650 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* **
112616690 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
* * * **
112616730 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * **
112616770 CTATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
112616810 ATATCCGG
1 ATATCCGG
112616818 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
39 5 0.04
40 133 0.95
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
Found at i:112616749 original size:80 final size:80
Alignment explanation
Indices: 112616615--112616817 Score: 239
Period size: 80 Copynumber: 2.5 Consensus size: 80
112616605 GAATGATATT
* * ** * * *
112616615 CGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAATTGT
1 CGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAATTGT
*
112616680 GCTAGT-G-ACTACATC
66 GCAAGTCGTACT--ATC
* * * *
112616695 CGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATTTGT
1 CGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAATTGT
*
112616760 GCAAGTCGTTCTATC
66 GCAAGTCGTACTATC
* *
112616775 CGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 CGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
112616818 TTGTATTCCG
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 102 0.97
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAATTGT
GCAAGTCGTACTATC
Found at i:112620731 original size:80 final size:80
Alignment explanation
Indices: 112620647--112620795 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
112620637 TATGGTAACC
* * * *
112620647 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
112620711 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
112620727 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
112620792 CCGG
66 CCGG
112620796 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:112620737 original size:40 final size:38
Alignment explanation
Indices: 112620688--112620795 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
112620678 ATCACGATTT
*
112620688 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
112620728 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
112620768 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
112620796 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:112628837 original size:80 final size:80
Alignment explanation
Indices: 112628753--112628901 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
112628743 TATGGTAACC
* * * *
112628753 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
112628817 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
112628833 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
112628898 CCGG
66 CCGG
112628902 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:112628843 original size:40 final size:38
Alignment explanation
Indices: 112628794--112628901 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
112628784 ATCACGATTT
*
112628794 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
112628834 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
112628874 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
112628902 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:112639656 original size:80 final size:80
Alignment explanation
Indices: 112639572--112639720 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
112639562 TATGGTAACC
* * * *
112639572 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
112639636 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
112639652 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
112639717 CCGG
66 CCGG
112639721 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:112639662 original size:40 final size:38
Alignment explanation
Indices: 112639613--112639720 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
112639603 ATCACGATTT
*
112639613 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
112639653 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
112639693 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
112639721 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:112644960 original size:33 final size:33
Alignment explanation
Indices: 112644901--112644979 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 33
112644891 GGACCAGGCC
* *
112644901 GTGTGGGCCACA-CGGCAAGGGACAATCTGGGA
1 GTGTGGGCCACATGGGCAAAGGACAATCTGGGA
* *
112644933 GTGTGGGCCACATGGGCAAAGGCCAATCTGGGC
1 GTGTGGGCCACATGGGCAAAGGACAATCTGGGA
* *
112644966 TTGTGGGCTACATG
1 GTGTGGGCCACATG
112644980 AGCGTGTAGG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
32 12 0.30
33 28 0.70
ACGTcount: A:0.22, C:0.22, G:0.39, T:0.18
Consensus pattern (33 bp):
GTGTGGGCCACATGGGCAAAGGACAATCTGGGA
Found at i:112649488 original size:20 final size:20
Alignment explanation
Indices: 112649463--112649500 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
112649453 GTTTATTCGC
*
112649463 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
112649483 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
112649501 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:112657803 original size:11 final size:10
Alignment explanation
Indices: 112657774--112657807 Score: 52
Period size: 11 Copynumber: 3.4 Consensus size: 10
112657764 GATGAAATAC
112657774 AAATTATGTT
1 AAATTATGTT
112657784 -AATTATGTT
1 AAATTATGTT
112657793 AAATGTATGTT
1 AAAT-TATGTT
112657804 AAAT
1 AAAT
112657808 ACTTGTTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.41
10 3 0.14
11 10 0.45
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (10 bp):
AAATTATGTT
Found at i:112662336 original size:51 final size:50
Alignment explanation
Indices: 112662251--112662351 Score: 193
Period size: 51 Copynumber: 2.0 Consensus size: 50
112662241 ACTTTGCCAC
112662251 ATAGATGGCCAGCCAAGGGTGGCTCCTTGGCTGCTATTTTTAGTAAATTT
1 ATAGATGGCCAGCCAAGGGTGGCTCCTTGGCTGCTATTTTTAGTAAATTT
112662301 ATAGATGGCCAGCCAAGGGGTGGCTCCTTGGCTGCTATTTTTAGTAAATTT
1 ATAGATGGCCAGCCAA-GGGTGGCTCCTTGGCTGCTATTTTTAGTAAATTT
112662352 TAGCTGCCAC
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 16 0.32
51 34 0.68
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.34
Consensus pattern (50 bp):
ATAGATGGCCAGCCAAGGGTGGCTCCTTGGCTGCTATTTTTAGTAAATTT
Found at i:112669715 original size:46 final size:46
Alignment explanation
Indices: 112669607--112669773 Score: 158
Period size: 46 Copynumber: 3.6 Consensus size: 46
112669597 TTATCAACGC
* * * ** *
112669607 CATGTCCCAGACAGGTCTTACACTAGCTTGTCTATCGCGA-GGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGC-T-CCCATC-TAATGGCCGATG
* * *
112669655 CATGTCCTAGACATGTCTTACATTAGCTCCCGTCTCAAT-GCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCCCATCT-AATGGCCGATG
* * * **
112669701 CATGTCCCAGACATGTCTTCCACTGGCTCTCATCTTGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCCCATCTAATGGCCGATG
112669747 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
112669774 ACACAATCAT
Statistics
Matches: 97, Mismatches: 19, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
45 1 0.01
46 71 0.73
47 1 0.01
48 24 0.25
ACGTcount: A:0.20, C:0.31, G:0.20, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCCCATCTAATGGCCGATG
Found at i:112676033 original size:21 final size:21
Alignment explanation
Indices: 112676007--112676053 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
112675997 CCTGTGGCAC
112676007 ACACGACCTAAGCACCTAAGG
1 ACACGACCTAAGCACCTAAGG
112676028 ACACGACCTAAGCACCTAAGG
1 ACACGACCTAAGCACCTAAGG
112676049 ACACG
1 ACACG
112676054 CCCTTATCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.38, C:0.34, G:0.19, T:0.09
Consensus pattern (21 bp):
ACACGACCTAAGCACCTAAGG
Found at i:112678547 original size:46 final size:46
Alignment explanation
Indices: 112678497--112678672 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
112678487 TGGTTGAGCA
112678497 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
112678543 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
112678588 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
112678636 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
112678673 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:112678653 original size:93 final size:93
Alignment explanation
Indices: 112678494--112678665 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
112678484 GGATGGTTGA
* *
112678494 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
112678559 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
112678587 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
112678652 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
112678666 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:112680177 original size:48 final size:44
Alignment explanation
Indices: 112680111--112680277 Score: 154
Period size: 46 Copynumber: 3.6 Consensus size: 44
112680101 AAGCTGACGC
* * *
112680111 CATGTCCCAGACAGGTCTTACACTAGCTTGTCTATCGCGAGGCTGATG
1 CATGTCCCAAACATGTCTTACACTAGC-T-TC-ATCTCGAGGC-GATG
* * *
112680159 CATGTCCCAAACATGTCTTACACTAGCTCCCATCTCAATGACGATG
1 CATGTCCCAAACATGTCTTACACTAGCT-TCATCTCGA-GGCGATG
* * * *
112680205 CATGTCCCAAACATATCTTCCACTAGCTCTCATCTTGTGGCCGATG
1 CATGTCCCAAACATGTCTTACACTAGCT-TCATCTCGAGG-CGATG
* *
112680251 CACGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAAACATGTCTTACACTAGC
112680278 ACACAATCAC
Statistics
Matches: 99, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
45 1 0.01
46 69 0.70
47 4 0.04
48 25 0.25
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (44 bp):
CATGTCCCAAACATGTCTTACACTAGCTTCATCTCGAGGCGATG
Found at i:112680215 original size:46 final size:46
Alignment explanation
Indices: 112680155--112680277 Score: 158
Period size: 46 Copynumber: 2.7 Consensus size: 46
112680145 TCGCGAGGCT
112680155 GATGCATGTCCCAAACATGTCTTACACTAGCTCCCATCTCAAT-GAC
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCCCATCT-AATGGAC
* * * ** *
112680201 GATGCATGTCCCAAACATATCTTCCACTAGCTCTCATCTTGTGGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCCCATCTAATGGAC
* *
112680247 GATGCACGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAAACATGTCTTACACTAGC
112680278 ACACAATCAC
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
45 1 0.02
46 65 0.98
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCTCCCATCTAATGGAC
Found at i:112685012 original size:138 final size:143
Alignment explanation
Indices: 112684794--112685127 Score: 374
Period size: 138 Copynumber: 2.4 Consensus size: 143
112684784 ATGTGAGTAT
* * * * * * * * *
112684794 TGAGATCTCATGTAAGACCATGTATGGGACATGGAATCGGCATCAAGATGTGATCTCATATAAGA
1 TGAGATCCCATGTAAGACCATATCTGGGATATGGCATCGGCATCAATATGAGATCCCATATAACA
* * * * ** *
112684859 CCATATCAGGGATATGGC-TTCGGCATCGTTAAGTGATTTCATGTAAGACCATGTCTGGGACATG
66 CCATATCAGGGATATGGCATT-GGCATCGATAAGAGATCTCATGTAAGACCATATCTAAGACAAG
*
112684923 GCAT-TG-AT-A-A
130 GCATCGGCATCAGA
* * *
112684933 -GAGATCCCGTGTAAGATCATATCTGGGATATGGCATCGGCATCAATATGAGATCCCATGTAACA
1 TGAGATCCCATGTAAGACCATATCTGGGATATGGCATCGGCATCAATATGAGATCCCATATAACA
* * *
112684997 CCATATCTGGGATATGGCATTGGCATCGATAAGAGATCTCGTGTAAGACCATATCTAAGATAAGG
66 CCATATCAGGGATATGGCATTGGCATCGATAAGAGATCTCATGTAAGACCATATCTAAGACAAGG
112685062 CATCGGCATCAGTA
131 CATCGGCATCAG-A
* * *
112685076 TGAGATCCCATATAAGACCATATCTGGGATATGGCATTGGCATCGATATGAG
1 TGAGATCCCATGTAAGACCATATCTGGGATATGGCATCGGCATCAATATGAG
112685128 GTCCTGTATA
Statistics
Matches: 160, Mismatches: 28, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
138 107 0.67
139 3 0.02
140 2 0.01
141 1 0.01
143 1 0.01
144 46 0.29
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.27
Consensus pattern (143 bp):
TGAGATCCCATGTAAGACCATATCTGGGATATGGCATCGGCATCAATATGAGATCCCATATAACA
CCATATCAGGGATATGGCATTGGCATCGATAAGAGATCTCATGTAAGACCATATCTAAGACAAGG
CATCGGCATCAGA
Found at i:112685049 original size:48 final size:48
Alignment explanation
Indices: 112684794--112685257 Score: 348
Period size: 48 Copynumber: 9.9 Consensus size: 48
112684784 ATGTGAGTAT
* * * * * * *
112684794 TGAGATCTCATGTAAGACCATGTATGGGACATGGAATCGGCATCAAGA
1 TGAGATCTCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
* * * *
112684842 TGTGATCTCATATAAGACCATATCAGGGATATGGC-TTCGGCATCGTTA
1 TGAGATCTCATGTAAGACCATATCTGGGATATGGCATT-GGCATCGATA
* * * * *
112684890 AGTGATTTCATGTAAGACCATGTCTGGGACATGGCATT-G-AT--A-A
1 TGAGATCTCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
* * * * *
112684933 -GAGATCCCGTGTAAGATCATATCTGGGATATGGCATCGGCATCAATA
1 TGAGATCTCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
* *
112684980 TGAGATCCCATGTAACACCATATCTGGGATATGGCATTGGCATCGATA
1 TGAGATCTCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
* * ** * *
112685028 AGAGATCTCGTGTAAGACCATATCTAAGATAAGGCATCGGCATC-AGTA
1 TGAGATCTCATGTAAGACCATATCTGGGATATGGCATTGGCATCGA-TA
* *
112685076 TGAGATCCCATATAAGACCATATCTGGGATATGGCATTGGCATCGATA
1 TGAGATCTCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
* * * * ** * *
112685124 TGAGGTC-C-TGTATAAGACCATGTCTAGGACATGGCATCAGCACCGTTA
1 TGAGATCTCATG--TAAGACCATATCTGGGATATGGCATTGGCATCGATA
* * * *
112685172 TGAGA-CTTCGTATAAGACCATAGCTGGG-T-T-G--TTGGCATCGATG
1 TGAGATC-TCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
* * * *
112685215 TGAGATCCCATGTAAGACCACATCTAGGACATGGCATTGGCAT
1 TGAGATCTCATGTAAGACCATATCTGGGATATGGCATTGGCAT
112685258 ATTTTCATGT
Statistics
Matches: 321, Mismatches: 74, Indels: 42
0.73 0.17 0.10
Matches are distributed among these distances:
42 29 0.09
43 29 0.09
44 3 0.01
45 2 0.01
46 6 0.02
47 6 0.02
48 241 0.75
49 4 0.01
50 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (48 bp):
TGAGATCTCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
Found at i:112686703 original size:55 final size:55
Alignment explanation
Indices: 112686573--112686720 Score: 201
Period size: 55 Copynumber: 2.7 Consensus size: 55
112686563 CTGACTTATC
* *
112686573 AACACGGCCATGGAACACGCCTGTGCTGCCTGCCCGTGGATGAAACTATCATTCT
1 AACACGGCCATGGAACACGCCCGTGCTGCCTGCCCGTGGACGAAACTATCATTCT
* * *
112686628 AACACGACCATGGAAAACGCCCGTGCTGCCTGCCCGTGGACGAAACTATCATTTT
1 AACACGGCCATGGAACACGCCCGTGCTGCCTGCCCGTGGACGAAACTATCATTCT
* *
112686683 AACACGGCCAT-GATGCACGCCCGTG-TGGCCTACCCGTG
1 AACACGGCCATGGA-ACACGCCCGTGCT-GCCTGCCCGTG
112686721 TACAACTTTG
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
54 3 0.04
55 79 0.96
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.20
Consensus pattern (55 bp):
AACACGGCCATGGAACACGCCCGTGCTGCCTGCCCGTGGACGAAACTATCATTCT
Found at i:112688005 original size:46 final size:46
Alignment explanation
Indices: 112687921--112688040 Score: 183
Period size: 46 Copynumber: 2.7 Consensus size: 46
112687911 TTCAAGGAAC
* *
112687921 ACCCGTCCGGGCTAGATTCCTT--T-CCATATTTGAGATCATGGATT
1 ACCCGTCCGGGCTA-AATCCTTACTGCAATATTTGAGATCATGGATT
112687965 ACCCGTCCGGGCTAAATCCTTACTGCAATATTTGAGATCATGGATT
1 ACCCGTCCGGGCTAAATCCTTACTGCAATATTTGAGATCATGGATT
*
112688011 ACCCGCCCGGGCTAAATCCTTACTGCAATA
1 ACCCGTCCGGGCTAAATCCTTACTGCAATA
112688041 CATACAAGAT
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
43 6 0.09
44 14 0.20
45 1 0.01
46 49 0.70
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
ACCCGTCCGGGCTAAATCCTTACTGCAATATTTGAGATCATGGATT
Found at i:112691772 original size:11 final size:11
Alignment explanation
Indices: 112691756--112691785 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
112691746 GAGTATTACC
112691756 AAAATTTACAA
1 AAAATTTACAA
112691767 AAAATTTACAA
1 AAAATTTACAA
*
112691778 ATAATTTA
1 AAAATTTA
112691786 TACTAGTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (11 bp):
AAAATTTACAA
Found at i:112698032 original size:12 final size:11
Alignment explanation
Indices: 112698002--112698066 Score: 53
Period size: 12 Copynumber: 5.8 Consensus size: 11
112697992 TTTACAAATA
*
112698002 AAATATAT-AC
1 AAATATATAAT
112698012 AAATCATATAAT
1 AAAT-ATATAAT
112698024 AAATAATATAA-
1 AAAT-ATATAAT
*
112698035 AAATATAAAAT
1 AAATATATAAT
*
112698046 AAAATCTATAAT
1 -AAATATATAAT
*
112698058 ATATATATA
1 AAATATATA
112698067 TATATAAGAA
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
10 9 0.20
11 15 0.34
12 20 0.45
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (11 bp):
AAATATATAAT
Found at i:112698046 original size:22 final size:23
Alignment explanation
Indices: 112697997--112698056 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
112697987 CATAATTTAC
*
112697997 AAATAAAATATATACAAATCATA
1 AAATAAAATATATAAAAATCATA
*
112698020 TAAT-AAATAATATAAAAAT-ATA
1 AAATAAAAT-ATATAAAAATCATA
*
112698042 AAATAAAATCTATAA
1 AAATAAAATATATAA
112698057 TATATATATA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
22 15 0.48
23 16 0.52
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (23 bp):
AAATAAAATATATAAAAATCATA
Found at i:112699605 original size:19 final size:19
Alignment explanation
Indices: 112699583--112699622 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
112699573 GAGCAAAGAC
112699583 TCATAGAAGGACCAAATTT
1 TCATAGAAGGACCAAATTT
112699602 TCATAGAAGGACCAAATTT
1 TCATAGAAGGACCAAATTT
112699621 TC
1 TC
112699623 TCGGTCTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (19 bp):
TCATAGAAGGACCAAATTT
Found at i:112700343 original size:207 final size:207
Alignment explanation
Indices: 112699989--112700872 Score: 1320
Period size: 207 Copynumber: 4.3 Consensus size: 207
112699979 GTAAAATCTA
* *
112699989 CTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATC-TGCTTCAGTC
1 CTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTTGCTTCAGTA
* * * *
112700053 TAATCATCTGTAGGCTAGATCTACTATGTGTCTCCTCTCCGTCGAATATGGAGACGCCAAACTTC
66 TAAACATCTGAAGGCCAGATCTACTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTTC
*
112700118 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGCAAGCACGTGA
131 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
*
112700183 AAGCCAAATTAG
196 AAGCCAAATCAG
*
112700195 CTATGTCTTCGATTTGTTCCCTGTAAGCACAAGAATGCCAAATCATCTTGGATCTTGCTTCAGTA
1 CTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTTGCTTCAGTA
* * *
112700260 TAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTTCGTCGAATATGGAGACGTCAAACTTC
66 TAAACATCTGAAGGCCAGATCTACTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTTC
* **
112700325 GATTTGTTCTCTGACAATACAGATATGCCAAATCATCTTAGATTTGCTTTTTCGTAAGCACGTGA
131 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
112700390 AAGCCAAATCAG
196 AAGCCAAATCAG
* * *
112700402 CTATGAT-TTTGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATC-----TC-TGCTTCAGT
1 CTATG-TCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTTGCTTCAGT
* * * *
112700460 CTAATCATCTGAAGGCTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTT
65 ATAAACATCTGAAGGCCAGATCTACTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTT
*
112700525 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTGAGCACGTG
130 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTG
112700590 AAAGCCAAATCAG
195 AAAGCCAAATCAG
* * *
112700603 CTATGTCCTCGATATGTTCCTTGTAAGCACAATG-ATGCCAAATTATCTTGGATCTTGCTTCAGT
1 CTATGTCTTCGATTTGTTCCTTGTAAGCACAA-GAATGCCAAATCATCTTGGATCTTGCTTCAGT
* * **
112700667 ATAAACATCTGAAGGTCAGATCTACTATGTGTCTGCTCTCCATCGAATATGGAGACGGTAAACTT
65 ATAAACATCTGAAGGCCAGATCTACTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTT
* * * * *
112700732 TGATTTGTTCTTTGACAATACAGATATGCCAAATCATCTTAGATTTGCTTCATCATAAGTACGTG
130 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTG
112700797 AAAGCCAAATCAG
195 AAAGCCAAATCAG
* * * *
112700810 CTATGAT-TTCGATTTTTTCCTTGTAAGCACAAGGATGTCAAATCATCTTGGATCTTACTTCAG
1 CTATG-TCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTTGCTTCAG
112700873 CCAGATCTGC
Statistics
Matches: 613, Mismatches: 53, Indels: 23
0.89 0.08 0.03
Matches are distributed among these distances:
200 1 0.00
201 181 0.30
202 3 0.00
206 55 0.09
207 371 0.61
208 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.33
Consensus pattern (207 bp):
CTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTTGCTTCAGTA
TAAACATCTGAAGGCCAGATCTACTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTTC
GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
AAGCCAAATCAG
Found at i:112700798 original size:408 final size:408
Alignment explanation
Indices: 112699996--112700857 Score: 1422
Period size: 408 Copynumber: 2.1 Consensus size: 408
112699986 CTACTATGTC
*
112699996 TTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTCTAATCATC
1 TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATC-----TCTGCTTCAGTCTAATCATC
*
112700061 TGTAGGCTAGATCTACTATGTGTCTCCTCTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTT
61 TGAAGGCTAGATCTACTATGTGTCTCCTCTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTT
112700126 CTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGCAAGCACGTGAAAGCCAAA
126 CTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGCAAGCACGTGAAAGCCAAA
* * *
112700191 TTAGCTATGTCTTCGATTTGTTCCCTGTAAGCACAAGAATGCCAAATCATCTTGGATCTTGCTTC
191 TCAGCTATGTCCTCGATATGTTCCCTGTAAGCACAAGAATGCCAAATCATCTTGGATCTTGCTTC
* * *
112700256 AGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTTCGTCGAATATGGAGACGTCAAA
256 AGTATAAACATCTGAAGGCCAGATCTACTATGTGTCTGCTCTCCATCGAATATGGAGACGTCAAA
** *
112700321 CTTCGATTTGTTCTCTGACAATACAGATATGCCAAATCATCTTAGATTTGCTTTTTCGTAAGCAC
321 CTTCGATTTGTTCTCTGACAATACAGATATGCCAAATCATCTTAGATTTGCTTCATCATAAGCAC
112700386 GTGAAAGCCAAATCAGCTATGAT
386 GTGAAAGCCAAATCAGCTATGAT
*
112700409 TTTGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTCTGCTTCAGTCTAATCATCTGAAG
1 TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTCTGCTTCAGTCTAATCATCTGAAG
* *
112700474 GCTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTG
66 GCTAGATCTACTATGTGTCTCCTCTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTG
**
112700539 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTGAGCACGTGAAAGCCAAATCAGC
131 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGCAAGCACGTGAAAGCCAAATCAGC
* *
112700604 TATGTCCTCGATATGTTCCTTGTAAGCACAATG-ATGCCAAATTATCTTGGATCTTGCTTCAGTA
196 TATGTCCTCGATATGTTCCCTGTAAGCACAA-GAATGCCAAATCATCTTGGATCTTGCTTCAGTA
*
112700668 TAAACATCTGAAGGTCAGATCTACTATGTGTCTGCTCTCCATCGAATATGGAGACGGT-AAACTT
260 TAAACATCTGAAGGCCAGATCTACTATGTGTCTGCTCTCCATCGAATATGGAGAC-GTCAAACTT
* * *
112700732 TGATTTGTTCTTTGACAATACAGATATGCCAAATCATCTTAGATTTGCTTCATCATAAGTACGTG
324 CGATTTGTTCTCTGACAATACAGATATGCCAAATCATCTTAGATTTGCTTCATCATAAGCACGTG
112700797 AAAGCCAAATCAGCTATGAT
389 AAAGCCAAATCAGCTATGAT
* * *
112700817 TTCGATTTTTTCCTTGTAAGCACAAGGATGTCAAATCATCT
1 TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
112700858 TGGATCTTAC
Statistics
Matches: 421, Mismatches: 26, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
408 380 0.90
409 3 0.01
413 38 0.09
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (408 bp):
TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTCTGCTTCAGTCTAATCATCTGAAG
GCTAGATCTACTATGTGTCTCCTCTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTG
ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGCAAGCACGTGAAAGCCAAATCAGC
TATGTCCTCGATATGTTCCCTGTAAGCACAAGAATGCCAAATCATCTTGGATCTTGCTTCAGTAT
AAACATCTGAAGGCCAGATCTACTATGTGTCTGCTCTCCATCGAATATGGAGACGTCAAACTTCG
ATTTGTTCTCTGACAATACAGATATGCCAAATCATCTTAGATTTGCTTCATCATAAGCACGTGAA
AGCCAAATCAGCTATGAT
Found at i:112712852 original size:12 final size:11
Alignment explanation
Indices: 112712822--112712897 Score: 59
Period size: 12 Copynumber: 6.9 Consensus size: 11
112712812 TTTACAAATA
*
112712822 AAATATAT-AC
1 AAATATATAAT
112712832 AAATCATATAAT
1 AAAT-ATATAAT
112712844 AAATAATATAA-
1 AAAT-ATATAAT
*
112712855 AAATATAAAAT
1 AAATATATAAT
*
112712866 AAAATCTATAAT
1 -AAATATATAAT
*
112712878 ATATATAT-AT
1 AAATATATAAT
*
112712888 ATATATATAA
1 AAATATATAA
112712898 GAAAGATTGA
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
10 19 0.35
11 15 0.28
12 20 0.37
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (11 bp):
AAATATATAAT
Found at i:112712866 original size:22 final size:23
Alignment explanation
Indices: 112712817--112712876 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
112712807 CATAATTTAC
*
112712817 AAATAAAATATATACAAATCATA
1 AAATAAAATATATAAAAATCATA
*
112712840 TAAT-AAATAATATAAAAAT-ATA
1 AAATAAAAT-ATATAAAAATCATA
*
112712862 AAATAAAATCTATAA
1 AAATAAAATATATAA
112712877 TATATATATA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
22 15 0.48
23 16 0.52
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (23 bp):
AAATAAAATATATAAAAATCATA
Found at i:112716209 original size:3 final size:3
Alignment explanation
Indices: 112716203--112716245 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
112716193 TATCTTTATT
112716203 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
112716246 AACTAAAAGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:112719120 original size:17 final size:17
Alignment explanation
Indices: 112719100--112719136 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
112719090 TCAATAAATG
112719100 ATTGTGATAAATTGCTT
1 ATTGTGATAAATTGCTT
112719117 ATTGTGATAAATTGCTT
1 ATTGTGATAAATTGCTT
112719134 ATT
1 ATT
112719137 CGAGAACAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.49
Consensus pattern (17 bp):
ATTGTGATAAATTGCTT
Found at i:112727184 original size:26 final size:24
Alignment explanation
Indices: 112727155--112727203 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
112727145 TTAAATAAAA
* *
112727155 ATTTTAAAATATAATAAATCAAATAC
1 ATTTCAAAACATAA-AAA-CAAATAC
112727181 ATTTCAAAACATAAAAACAAATA
1 ATTTCAAAACATAAAAACAAATA
112727204 TTAAAACAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.61, C:0.10, G:0.00, T:0.29
Consensus pattern (24 bp):
ATTTCAAAACATAAAAACAAATAC
Found at i:112727338 original size:24 final size:23
Alignment explanation
Indices: 112727293--112727338 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
112727283 TTATATTAAA
*
112727293 ATTAAAAATAAAATGTAAATATG
1 ATTAAAAATAAAATATAAATATG
*
112727316 ATTAAAAATAAAAATATATATAT
1 ATTAAAAAT-AAAATATAAATAT
112727339 TTAGTATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (23 bp):
ATTAAAAATAAAATATAAATATG
Found at i:112739916 original size:31 final size:31
Alignment explanation
Indices: 112739878--112739938 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
112739868 TAGCTCAATA
112739878 ATTTAAATAAAAACTTTT-GAATAATTTAATC
1 ATTTAAATAAAAA-TTTTCGAATAATTTAATC
*
112739909 ATTTAAATAAGAATTTTCGAATAATTTAAT
1 ATTTAAATAAAAATTTTCGAATAATTTAAT
112739939 AATCATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 4 0.14
31 24 0.86
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.43
Consensus pattern (31 bp):
ATTTAAATAAAAATTTTCGAATAATTTAATC
Found at i:112742818 original size:27 final size:27
Alignment explanation
Indices: 112742808--112743186 Score: 297
Period size: 27 Copynumber: 14.0 Consensus size: 27
112742798 GTACTCTCGA
*
112742808 TTTACAGAATTACCGTTTTACCCTCAG
1 TTTACAGAATTACCATTTTACCCTCAG
112742835 TTTACAGAATTACCATTTTACCCTCAG
1 TTTACAGAATTACCATTTTACCCTCAG
*
112742862 TTTACAGAATTACTATTTTACCCTC-G
1 TTTACAGAATTACCATTTTACCCTCAG
* *
112742888 ATTTACAGAATTACCGTGTTTTACCCTCAA
1 -TTTACAGAATTACC--ATTTTACCCTCAG
** * ***
112742918 TTTGTAAAATTATTGTTTTACCCTC-G
1 TTTACAGAATTACCATTTTACCCTCAG
*
112742944 ATTTACAGAATTACCGTTTTACCCTCAG
1 -TTTACAGAATTACCATTTTACCCTCAG
112742972 TTTACAGAATTACCATTTTACCCTC-G
1 TTTACAGAATTACCATTTTACCCTCAG
** * **
112742998 ATTTACAGAATTTTCGTTTTACTTTCAG
1 -TTTACAGAATTACCATTTTACCCTCAG
**
112743026 TTTACAGAATTACTGTTTTACCCTC-G
1 TTTACAGAATTACCATTTTACCCTCAG
*** *
112743052 ATTTACAGAATTATTGTTTTACCCTCGAT
1 -TTTACAGAATTACCATTTTACCCTC-AG
* *
112743081 TTGTA-A-AATTATCGTTTTACCCTC-G
1 TT-TACAGAATTACCATTTTACCCTCAG
* ***** *
112743106 ATTTATAGAATTTTTGGTTTACCCTCGG
1 -TTTACAGAATTACCATTTTACCCTCAG
* *
112743134 TTTACAAAATTATCATTTTACCCTC-G
1 TTTACAGAATTACCATTTTACCCTCAG
* *
112743160 ATTTATAGAATTACTATTTTACCCTCA
1 -TTTACAGAATTACCATTTTACCCTCA
112743187 ATTGTGAAAT
Statistics
Matches: 290, Mismatches: 44, Indels: 35
0.79 0.12 0.09
Matches are distributed among these distances:
25 2 0.01
26 7 0.02
27 254 0.88
28 6 0.02
29 21 0.07
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
TTTACAGAATTACCATTTTACCCTCAG
Found at i:112742846 original size:54 final size:54
Alignment explanation
Indices: 112742808--112743186 Score: 381
Period size: 54 Copynumber: 7.0 Consensus size: 54
112742798 GTACTCTCGA
*
112742808 TTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACCATTTTACCCTCAG
1 TTTACAGAATTACTGTTTTACCCTCGA-TTTACAGAATTACCATTTTACCCTCAG
* * *
112742862 TTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTGTTTTACCCTCAA
1 TTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACC--ATTTTACCCTCAG
** * * *
112742918 TTTGTAAAATTATTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
1 TTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAG
** ** * **
112742972 TTTACAGAATTACCATTTTACCCTCGATTTACAGAATTTTCGTTTTACTTTCAG
1 TTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAG
*** *
112743026 TTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATTGTTTTACCCTCGAT
1 TTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTC-AG
* ***** *
112743081 TTGTA-A-AATTA-TCGTTTTACCCTCGATTTATAGAATTTTTGGTTTACCCTCGG
1 TT-TACAGAATTACT-GTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAG
* * * *
112743134 TTTACAAAATTA-TCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCA
1 TTTACAGAATTACT-GTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCA
112743187 ATTGTGAAAT
Statistics
Matches: 279, Mismatches: 38, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
52 2 0.01
53 4 0.01
54 219 0.78
55 5 0.02
56 49 0.18
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (54 bp):
TTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAG
Found at i:112742888 original size:81 final size:82
Alignment explanation
Indices: 112742803--112743186 Score: 392
Period size: 81 Copynumber: 4.7 Consensus size: 82
112742793 CCAAAGTACT
* *
112742803 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCAG-TTTAC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTATCGTTTTACCCTCAGATTTAC
*
112742867 AGAATTACTATTTTACC
66 AGAATTACTGTTTTACC
* ** * *
112742884 CTCGATTTACAGAATTACCGTGTTTTACCCTCAATTTGTAAAATTATTGTTTTACCCTC-GATTT
1 CTCGATTTACAGAATTACC--GTTTTACCCTCAGTTTACAGAATTATCGTTTTACCCTCAGATTT
*
112742948 ACAGAATTACCGTTTTACC
64 ACAGAATTACTGTTTTACC
* * **
112742967 CTC-AGTTTACAGAATTACCATTTTACCCTC-GATTTACAGAATTTTCGTTTTACTTTCAG-TTT
1 CTCGA-TTTACAGAATTACCGTTTTACCCTCAG-TTTACAGAATTATCGTTTTACCCTCAGATTT
112743029 ACAGAATTACTGTTTTACC
64 ACAGAATTACTGTTTTACC
** *
112743048 CTCGATTTACAGAATTATTGTTTTACCCTCGATTTGTA-A-AATTATCGTTTTACCCTC-GATTT
1 CTCGATTTACAGAATTACCGTTTTACCCTC-AGTT-TACAGAATTATCGTTTTACCCTCAGATTT
* ** *
112743110 ATAGAATTTTTGGTTTACC
64 ACAGAATTACTGTTTTACC
* * * * * *
112743129 CTCGGTTTACAAAATTATCATTTTACCCTC-GATTTATAGAATTA-CTATTTTACCCTCA
1 CTCGATTTACAGAATTACCGTTTTACCCTCAG-TTTACAGAATTATC-GTTTTACCCTCA
112743187 ATTGTGAAAT
Statistics
Matches: 251, Mismatches: 36, Indels: 31
0.79 0.11 0.10
Matches are distributed among these distances:
79 2 0.01
80 5 0.02
81 167 0.67
82 7 0.03
83 70 0.28
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (82 bp):
CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTATCGTTTTACCCTCAGATTTAC
AGAATTACTGTTTTACC
Found at i:112743224 original size:27 final size:27
Alignment explanation
Indices: 112743202--112743389 Score: 241
Period size: 27 Copynumber: 7.0 Consensus size: 27
112743192 GAAATTACTA
112743202 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * **
112743229 AAATACCCTTATAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
112743256 AAATACCCTTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
112743283 AAATACCCCCGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
112743310 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
112743337 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* ** * *
112743364 AGATACCTTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
112743390 ATTTTGCCCC
Statistics
Matches: 140, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:112743626 original size:27 final size:26
Alignment explanation
Indices: 112743588--112743670 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
112743578 CGGAGGAAGC
*
112743588 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
112743615 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
112743641 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
112743668 GTT
1 GTT
112743671 GATCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:112743790 original size:22 final size:22
Alignment explanation
Indices: 112743758--112743816 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
112743748 CCCGTTATTA
*
112743758 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
112743780 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
112743802 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
112743817 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:112744003 original size:27 final size:27
Alignment explanation
Indices: 112743981--112744081 Score: 127
Period size: 27 Copynumber: 3.8 Consensus size: 27
112743971 TAGGTGGGTT
112743981 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACATTATCTGATTCTGGTGGCTC
112744008 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACATTATCTGATTCTGGTGGCTC
* * *
112744035 TGCCACAATATCTGCA-TCTTGTGACTC
1 TGCCACATTATCTG-ATTCTGGTGGCTC
*
112744062 TGTCACGA-TATCTG-TTCTGG
1 TGCCAC-ATTATCTGATTCTGG
112744082 CAGCCATGCT
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
26 4 0.06
27 60 0.91
28 2 0.03
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.37
Consensus pattern (27 bp):
TGCCACATTATCTGATTCTGGTGGCTC
Found at i:112744031 original size:54 final size:53
Alignment explanation
Indices: 112743956--112744081 Score: 125
Period size: 54 Copynumber: 2.4 Consensus size: 53
112743946 TATGGCTTTG
* * * * *
112743956 TGCCACG-TATTCTGTT-AGGTGGGTTTGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACGATA-TCTGTTCTGGTGGCTCTGCCACAATATCTGCA-TCTGGTGACTC
*
112744008 TGCCAC-ATTATCTGATTCTGGTGGCTCTGCCACAATATCTGCATCTTGTGACTC
1 TGCCACGA-TATCTG-TTCTGGTGGCTCTGCCACAATATCTGCATCTGGTGACTC
*
112744062 TGTCACGATATCTGTTCTGG
1 TGCCACGATATCTGTTCTGG
112744082 CAGCCATGCT
Statistics
Matches: 61, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
52 10 0.16
53 10 0.16
54 39 0.64
55 2 0.03
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (53 bp):
TGCCACGATATCTGTTCTGGTGGCTCTGCCACAATATCTGCATCTGGTGACTC
Found at i:112744208 original size:6 final size:6
Alignment explanation
Indices: 112744199--112744306 Score: 107
Period size: 6 Copynumber: 17.8 Consensus size: 6
112744189 TTGCATTCAC
* * *
112744199 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
112744248 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
112744296 ATTCTG ATTCT
1 ATTCTG ATTCT
112744307 CATTTTGGTT
Statistics
Matches: 85, Mismatches: 8, Indels: 18
0.77 0.07 0.16
Matches are distributed among these distances:
5 6 0.07
6 72 0.85
7 5 0.06
8 2 0.02
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:112744262 original size:30 final size:30
Alignment explanation
Indices: 112744199--112744306 Score: 130
Period size: 30 Copynumber: 3.6 Consensus size: 30
112744189 TTGCATTCAC
*
112744199 ATTCTGATTCTGATTCTGTCACCTAAT-TCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATAT-TG
*
112744230 ATTCTGATTCTAATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATATTG
** *
112744260 ATTCTGATTCTGATTCTGATT-CTGTTACTG
1 ATTCTGATTCTGATTCTG-TTACTAATATTG
112744290 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
112744307 CATTTTGGTT
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
30 47 0.68
31 22 0.32
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATATTG
Found at i:112744270 original size:36 final size:36
Alignment explanation
Indices: 112744224--112744306 Score: 132
Period size: 36 Copynumber: 2.3 Consensus size: 36
112744214 CTGTCACCTA
112744224 ATTCTGATTCTGATTCTAATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTAATTCTGTTACTAAT-TCTG
* *
112744260 ATTCTGATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTAATTCTGTTACTAATTCTG
112744296 ATTCTGATTCT
1 ATTCTGATTCT
112744307 CATTTTGGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
35 1 0.02
36 43 0.98
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.51
Consensus pattern (36 bp):
ATTCTGATTCTGATTCTAATTCTGTTACTAATTCTG
Found at i:112744327 original size:36 final size:34
Alignment explanation
Indices: 112744235--112744327 Score: 79
Period size: 30 Copynumber: 2.7 Consensus size: 34
112744225 TTCTGATTCT
112744235 GATTCTAATTCTGTTACTAATAT-TGATTCTGATTCT
1 GATTCTAATTCTGTT-C-AAT-TCTGATTCTGATTCT
*
112744271 GATTCTGATTCTGTT--A--CTGATTCTGATTCT
1 GATTCTAATTCTGTTCAATTCTGATTCTGATTCT
* *
112744301 GATTCTCATTTTGGTTCCAATTCTGAT
1 GATTCTAATTCT-GTT-CAATTCTGAT
112744328 AATGTTTCTT
Statistics
Matches: 47, Mismatches: 3, Indels: 14
0.73 0.05 0.22
Matches are distributed among these distances:
30 23 0.49
31 3 0.06
32 1 0.02
34 1 0.02
36 19 0.40
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.49
Consensus pattern (34 bp):
GATTCTAATTCTGTTCAATTCTGATTCTGATTCT
Found at i:112746705 original size:6 final size:6
Alignment explanation
Indices: 112746694--112746731 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
112746684 AAATTGTATT
112746694 ATTAGG ATTAGG ATTAGG ATTAGG ATTAGG ATTAGG AT
1 ATTAGG ATTAGG ATTAGG ATTAGG ATTAGG ATTAGG AT
112746732 ACGATGGGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (6 bp):
ATTAGG
Found at i:112748520 original size:3 final size:3
Alignment explanation
Indices: 112748485--112748584 Score: 75
Period size: 3 Copynumber: 33.3 Consensus size: 3
112748475 TTTTTATTTA
* * * *
112748485 TAT TAT TAG TA- TAT TGT TAT TCCT TAGT TAT TAT TAT TA- TAT CAT
1 TAT TAT TAT TAT TAT TAT TAT T-AT TA-T TAT TAT TAT TAT TAT TAT
*
112748530 T-T T-T TAT GTATT TAT CTA- CAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TA-T TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
112748575 TAT TAT TAT T
1 TAT TAT TAT T
112748585 GAACACATCA
Statistics
Matches: 79, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
2 9 0.11
3 58 0.73
4 11 0.14
5 1 0.01
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:112758679 original size:8 final size:8
Alignment explanation
Indices: 112758666--112758697 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
112758656 GGAATTAAGG
112758666 GCAAAATT
1 GCAAAATT
112758674 GCAAAATT
1 GCAAAATT
112758682 GCAAAATT
1 GCAAAATT
112758690 GCAAAATT
1 GCAAAATT
112758698 TACTTAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.25
Consensus pattern (8 bp):
GCAAAATT
Found at i:112761131 original size:28 final size:28
Alignment explanation
Indices: 112761078--112761161 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
112761068 CACTTTGTGC
112761078 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
112761107 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
112761135 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
112761162 CTGGTGTGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:112761173 original size:23 final size:24
Alignment explanation
Indices: 112761082--112761175 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 24
112761072 TTGTGCTATT
112761082 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-TATA-TA
*
112761109 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGG---ATAT-ATA
112761139 CTGGTGTGTTTTGGAGGAT-TATA
1 CTGGTGTGTTTTGGAGGATATATA
112761162 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
112761176 TTGGACATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
23 17 0.29
24 1 0.02
25 2 0.03
28 18 0.31
29 14 0.24
30 5 0.08
31 2 0.03
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46
Consensus pattern (24 bp):
CTGGTGTGTTTTGGAGGATATATA
Found at i:112761435 original size:21 final size:21
Alignment explanation
Indices: 112761387--112761438 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
112761377 ATGTATCGTA
*
112761387 TTTCAGGCACCTTGTGTGTCG
1 TTTCAGGCACCTCGTGTGTCG
***
112761408 CAGCAGGCACCTCGTGTGTCG
1 TTTCAGGCACCTCGTGTGTCG
112761429 TTTCAGGCAC
1 TTTCAGGCAC
112761439 TTATGTGTCG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.13, C:0.29, G:0.29, T:0.29
Consensus pattern (21 bp):
TTTCAGGCACCTCGTGTGTCG
Found at i:112775620 original size:49 final size:49
Alignment explanation
Indices: 112775559--112775689 Score: 149
Period size: 49 Copynumber: 2.7 Consensus size: 49
112775549 TGAGGTGTGT
* *
112775559 TAGTGTAAGACCTGTCTAGGACATGGCATCGACACT-GATA-AGCGAGAGC
1 TAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATATA-CGAAAGC
* * * * *
112775608 TAGTGTAAGACCTGTCTGGGAGATGGCTTCGGCCTCGATATATGAAAGT
1 TAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATATACGAAAGC
* *
112775657 TAGTGTAAGGCCTGTTTGGGACATGGCATCGAC
1 TAGTGTAAGACCTGTCTGGGACATGGCATCGAC
112775690 TTAGATGTGA
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
48 2 0.03
49 65 0.96
50 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (49 bp):
TAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATATACGAAAGC
Found at i:112776923 original size:14 final size:14
Alignment explanation
Indices: 112776904--112776931 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
112776894 CTTTTAACAC
112776904 GGCCATATAAAGAA
1 GGCCATATAAAGAA
112776918 GGCCATATAAAGAA
1 GGCCATATAAAGAA
112776932 TTCGTAGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.21, T:0.14
Consensus pattern (14 bp):
GGCCATATAAAGAA
Found at i:112780118 original size:48 final size:48
Alignment explanation
Indices: 112780030--112780140 Score: 141
Period size: 48 Copynumber: 2.3 Consensus size: 48
112780020 TATGTGTGCT
* ** *
112780030 AGTGTAAGACCATATTTGGAACATGGCATTGGCGACATTATGAGATCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCAGCGACATTATGAGAGCC
* * *
112780078 AGTGTAAGACCATGTTTGGAACATGGCATCAGCTATATTATGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCAGCGACATTATGAGAGCC
* *
112780126 AGAGTAAGGCCATGT
1 AGTGTAAGACCATGT
112780141 CCAGGACATG
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCAGCGACATTATGAGAGCC
Found at i:112787773 original size:27 final size:26
Alignment explanation
Indices: 112787709--112787774 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
112787699 AACATGTTCG
* *
112787709 GAAAGAAAGCCTTTGTGGCATAATAT
1 GAAAGAAAGCCTTTGTGACATAATAC
* *
112787735 GAAAGAATGCCTTTGTGACA-AACTCC
1 GAAAGAAAGCCTTTGTGACATAA-TAC
112787761 GTAAAGAAAGCCTT
1 G-AAAGAAAGCCTT
112787775 CGTGGCGCAC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
25 2 0.06
26 20 0.61
27 11 0.33
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (26 bp):
GAAAGAAAGCCTTTGTGACATAATAC
Found at i:112792911 original size:68 final size:69
Alignment explanation
Indices: 112792789--112792923 Score: 173
Period size: 68 Copynumber: 2.0 Consensus size: 69
112792779 TAATTAAACT
* * ** * * * *
112792789 TAATCACTTTAATATTAATTTACTATAATATTTATCAAGATAAATATTAGATTAAATTTAATATT
1 TAATCACTTCAATATTAAATTAAAAAAATATCTATCAAGATAAATATTAAATTAAATTCAATATT
112792854 AAGA
66 AAGA
* *
112792858 TAATCACTTCAATATTAAATTAAAAAAATA-CTATTAAGATAAGTATTAAATTAAATTCAATATT
1 TAATCACTTCAATATTAAATTAAAAAAATATCTATCAAGATAAATATTAAATTAAATTCAATATT
112792922 AA
66 AA
112792924 ACTATTAAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
68 31 0.55
69 25 0.45
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.40
Consensus pattern (69 bp):
TAATCACTTCAATATTAAATTAAAAAAATATCTATCAAGATAAATATTAAATTAAATTCAATATT
AAGA
Found at i:112794096 original size:20 final size:18
Alignment explanation
Indices: 112794051--112794097 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
112794041 CTAAACATGC
112794051 TCACACATACAAAACATT
1 TCACACATACAAAACATT
* *
112794069 T-GCACATACAATCAAGATT
1 TCACACATACAA--AACATT
112794088 TCACACATAC
1 TCACACATAC
112794098 CTAAAATATA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
19 6 0.26
20 7 0.30
ACGTcount: A:0.45, C:0.28, G:0.04, T:0.23
Consensus pattern (18 bp):
TCACACATACAAAACATT
Found at i:112794395 original size:2 final size:2
Alignment explanation
Indices: 112794388--112794415 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
112794378 CAAATGACAA
112794388 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
112794416 GCCAAACTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:112795075 original size:15 final size:13
Alignment explanation
Indices: 112795044--112795068 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
112795034 TATTTAAAAA
112795044 TTATTTTGTGTGT
1 TTATTTTGTGTGT
112795057 TTATTTTGTGTG
1 TTATTTTGTGTG
112795069 AATTTATATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:112798458 original size:30 final size:30
Alignment explanation
Indices: 112798403--112798592 Score: 228
Period size: 30 Copynumber: 6.5 Consensus size: 30
112798393 ATAGTGAATC
*
112798403 CGCACACTTAGTGCTAT-ATATTTTCAGCT
1 CGCACACTTAGTGCTATAAAATTTTCAGCT
112798432 CGCACACTTAGTGCTATAAAATTTTCAGCT
1 CGCACACTTAGTGCTATAAAATTTTCAGCT
* **
112798462 CGCACACTTAGTGCCATGTAATTTTCAGCT
1 CGCACACTTAGTGCTATAAAATTTTCAGCT
*
112798492 CGCACACTTAGTGCTAT-ATATTTTCAGCT
1 CGCACACTTAGTGCTATAAAATTTTCAGCT
* *
112798521 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATAAAATTTTC-AGCT
* * * * *
112798549 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATAAAATTTTCAGCT
112798579 CGCACACTTAGTGC
1 CGCACACTTAGTGC
112798593 CAATCTTGTC
Statistics
Matches: 141, Mismatches: 14, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
27 2 0.01
28 22 0.16
29 44 0.31
30 72 0.51
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATAAAATTTTCAGCT
Found at i:112798515 original size:59 final size:59
Alignment explanation
Indices: 112798403--112798594 Score: 248
Period size: 59 Copynumber: 3.3 Consensus size: 59
112798393 ATAGTGAATC
*
112798403 CGCACACTTAGTGCTATAT-ATTTTCAGCTCGCACACTTAGTGCTATAAAATTTTCAGCT
1 CGCACACTTAGTGCCATATAATTTTCAGCTCGCACACTTAGTGCTAT-AAATTTTCAGCT
* *
112798462 CGCACACTTAGTGCCATGTAATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCCATATAATTTTCAGCTCGCACACTTAGTGCTATAAATTTTCAGCT
* * * * * *
112798521 CGCACACTTAGTGCTATATAA---TCAAACTCGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCCATATAATTTTC-AGCTCGCACACTTAGTGCTATA-AATTTTCAGCT
112798579 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
112798595 ATCTTGTCAC
Statistics
Matches: 118, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.17
58 22 0.19
59 47 0.40
60 27 0.23
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (59 bp):
CGCACACTTAGTGCCATATAATTTTCAGCTCGCACACTTAGTGCTATAAATTTTCAGCT
Found at i:112801833 original size:38 final size:38
Alignment explanation
Indices: 112801773--112801847 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
112801763 GATATAATAC
* *
112801773 ACCGGCACAAAGCCTGCTAGGCAC-GAAGCCCGAATATT
1 ACCGACACAAAGCCTGCGAGGCACAG-AGCCCGAATATT
*
112801811 ACCGACACAAAGCCTGCGAGGCACAGAGCCTGAATAT
1 ACCGACACAAAGCCTGCGAGGCACAGAGCCCGAATAT
112801848 CACTATGTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 32 0.97
39 1 0.03
ACGTcount: A:0.33, C:0.31, G:0.24, T:0.12
Consensus pattern (38 bp):
ACCGACACAAAGCCTGCGAGGCACAGAGCCCGAATATT
Found at i:112807446 original size:9 final size:9
Alignment explanation
Indices: 112807434--112807510 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
112807424 TTTGATAAAC
112807434 ATGATATGT
1 ATGATATGT
*
112807443 ATGATATGCAC
1 ATGATATG--T
112807454 ATGATATGT
1 ATGATATGT
*
112807463 ATGATATGCAC
1 ATGATATG--T
*
112807474 ATGACATGT
1 ATGATATGT
*
112807483 ATGATATGCAC
1 ATGATATG--T
112807494 ATGATATGT
1 ATGATATGT
112807503 ATGATATG
1 ATGATATG
112807511 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:112807457 original size:20 final size:20
Alignment explanation
Indices: 112807432--112807514 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
112807422 ATTTTGATAA
112807432 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
112807452 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
112807472 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
112807492 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
112807512 ACA
1 ACA
112807515 CGAGATGGTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:112807459 original size:11 final size:11
Alignment explanation
Indices: 112807443--112807514 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
112807433 CATGATATGT
112807443 ATGATATGCAC
1 ATGATATGCAC
*
112807454 ATGATATG--T
1 ATGATATGCAC
112807463 ATGATATGCAC
1 ATGATATGCAC
* *
112807474 ATGACATG--T
1 ATGATATGCAC
112807483 ATGATATGCAC
1 ATGATATGCAC
*
112807494 ATGATATG--T
1 ATGATATGCAC
112807503 ATGATATGCAC
1 ATGATATGCAC
112807514 A
1 A
112807515 CGAGATGGTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:112814206 original size:9 final size:9
Alignment explanation
Indices: 112814194--112814270 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
112814184 TTTGATAAAC
112814194 ATGATATGT
1 ATGATATGT
*
112814203 ATGATATGCAC
1 ATGATATG--T
112814214 ATGATATGT
1 ATGATATGT
*
112814223 ATGATATGCAC
1 ATGATATG--T
*
112814234 ATGACATGT
1 ATGATATGT
*
112814243 ATGATATGCAC
1 ATGATATG--T
112814254 ATGATATGT
1 ATGATATGT
112814263 ATGATATG
1 ATGATATG
112814271 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Done.