Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 363 of 433
Found at i:113993352 original size:248 final size:248
Alignment explanation
Indices: 113992911--113993390 Score: 800
Period size: 248 Copynumber: 1.9 Consensus size: 248
113992901 GTAATTTTTC
* * * *
113992911 CATAATATGATTTTTGGGTCATATTGAATAATGTGACTAATATTTGAGCTAAATTTGATATTATA
1 CATAATATGATTTTTGCGCCACATTGAATAATGTGACTAATAATTGAGCTAAATTTGATATTATA
* * *
113992976 GATCAAGAAAAACGAAGTTCGAGTCTAGATCAGGGGGAAAACAAATATTGGACAAATAGGTCTTT
66 GATCAAGAAAAACGAAGTTCGAGTCTAGATCAGGGGAAAAACAAATATTAGACAAATAGGTCCTT
* *
113993041 TTTGCCATTGTCGCATTCGAGGTAAGTTCGTATGTTAATAATGCAATATTATAGTTATATTTTAA
131 TTCGCCATTGTCGCATTCGAGGTAACTTCGTATGTTAATAATGCAATATTATAGTTATATTTTAA
*
113993106 TGTTATGATATTGTATGAAATGTATGATTATTTCCATAATATTGCATTATTTA
196 TATTATGATATTGTATGAAATGTATGATTATTTCCATAATATTGCATTATTTA
*
113993159 CATAATATGATTTTTGCGCCACATTGAATAATGTGACTAATAATTGGGCTAAATTTGATATTATA
1 CATAATATGATTTTTGCGCCACATTGAATAATGTGACTAATAATTGAGCTAAATTTGATATTATA
*
113993224 GATCAAGAAAAACGAAGTTCGAGTCTAGATTAGGGGAAAAACAAATATTAGACAAATAGGTCCTT
66 GATCAAGAAAAACGAAGTTCGAGTCTAGATCAGGGGAAAAACAAATATTAGACAAATAGGTCCTT
* * *
113993289 TTCGCCGTTGTCGCATTCGAGGTTACTTCGTAT-TTAAATAATGCAATATTATAGTTGTATTTTA
131 TTCGCCATTGTCGCATTCGAGGTAACTTCGTATGTT-AATAATGCAATATTATAGTTATATTTTA
*
113993353 ATATTTTGATATTGTATGAAATGTATGATTATTTCCAT
195 ATATTATGATATTGTATGAAATGTATGATTATTTCCAT
113993391 GAGCATAATT
Statistics
Matches: 215, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
247 2 0.01
248 213 0.99
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (248 bp):
CATAATATGATTTTTGCGCCACATTGAATAATGTGACTAATAATTGAGCTAAATTTGATATTATA
GATCAAGAAAAACGAAGTTCGAGTCTAGATCAGGGGAAAAACAAATATTAGACAAATAGGTCCTT
TTCGCCATTGTCGCATTCGAGGTAACTTCGTATGTTAATAATGCAATATTATAGTTATATTTTAA
TATTATGATATTGTATGAAATGTATGATTATTTCCATAATATTGCATTATTTA
Found at i:113993615 original size:43 final size:42
Alignment explanation
Indices: 113993483--113993646 Score: 195
Period size: 42 Copynumber: 3.9 Consensus size: 42
113993473 TTAGGGTTAC
113993483 TGAGATTACGTGTAAGACCATATCTAGGATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTAGGATATGGCATCGATA
* * * * * *
113993525 TGAGACTT-TGTATAAGACTATATCTTGGATATGGCATCAATG
1 TGAGA-TTACGTGTAAGACCATATCTAGGATATGGCATCGATA
* * * *
113993567 TGAGATTTCGTGTAAGACCATAACTGGGCTATTGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTAGGATA-TGGCATCGATA
* *
113993610 CGAGATTACATGTAAGACCATATCTAGGATATGGCAT
1 TGAGATTACGTGTAAGACCATATCTAGGATATGGCAT
113993647 TGGTACGGTA
Statistics
Matches: 99, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
41 2 0.02
42 61 0.62
43 36 0.36
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTAGGATATGGCATCGATA
Found at i:113993633 original size:85 final size:84
Alignment explanation
Indices: 113993483--113993646 Score: 213
Period size: 85 Copynumber: 1.9 Consensus size: 84
113993473 TTAGGGTTAC
* * ** *
113993483 TGAGATTACGTGTAAGACCATATCTAGGATATGGCATCGATATGAGACTTTGTATAAGACTATAT
1 TGAGATTACGTGTAAGACCATAACTAGGATATGGCATCGATACGAGACTTCATATAAGACCATAT
*
113993548 CTTGGATATGGCATCAATG
66 CTAGGATATGGCATCAATG
* * * *
113993567 TGAGATTTCGTGTAAGACCATAACTGGGCTATTGGCATCGATACGAGA-TTACATGTAAGACCAT
1 TGAGATTACGTGTAAGACCATAACTAGGATA-TGGCATCGATACGAGACTT-CATATAAGACCAT
113993631 ATCTAGGATATGGCAT
64 ATCTAGGATATGGCAT
113993647 TGGTACGGTA
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
84 29 0.43
85 39 0.57
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (84 bp):
TGAGATTACGTGTAAGACCATAACTAGGATATGGCATCGATACGAGACTTCATATAAGACCATAT
CTAGGATATGGCATCAATG
Found at i:113998483 original size:23 final size:23
Alignment explanation
Indices: 113998456--113998499 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
113998446 TAATTATATA
113998456 GTTTATGAATG-CATGATAATTGC
1 GTTTATGAATGACATGA-AATTGC
*
113998479 GTTTATGGATGACATGAAATT
1 GTTTATGAATGACATGAAATT
113998500 ACATGAAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.39
Consensus pattern (23 bp):
GTTTATGAATGACATGAAATTGC
Found at i:114003310 original size:28 final size:28
Alignment explanation
Indices: 114003276--114003357 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
114003266 GTAATCATCA
* * *
114003276 AATTAAGGCTTGTGTAATCCATTTGATT
1 AATTAAGGCTTGTGTGAGCCATTTCATT
* *
114003304 AATTAAGGCTTATGTGAGCCATTACATT
1 AATTAAGGCTTGTGTGAGCCATTTCATT
**
114003332 ACCTAAGGCTTGTGTGAGCCATTTCA
1 AATTAAGGCTTGTGTGAGCCATTTCA
114003358 AAAATGCCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.37
Consensus pattern (28 bp):
AATTAAGGCTTGTGTGAGCCATTTCATT
Found at i:114007025 original size:39 final size:40
Alignment explanation
Indices: 114006970--114007054 Score: 100
Period size: 39 Copynumber: 2.1 Consensus size: 40
114006960 TCAAATACAT
114006970 TTAAAACAAATATTAAAACAAAAAACAAA-TAAAAATATA
1 TTAAAACAAATATTAAAACAAAAAACAAATTAAAAATATA
* * * * * *
114007009 TTAAAACAATTTTTAAAATAATACACAAATTGAAAATATA
1 TTAAAACAAATATTAAAACAAAAAACAAATTAAAAATATA
*
114007049 ATAAAA
1 TTAAAA
114007055 ATTAATTATA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 24 0.63
40 14 0.37
ACGTcount: A:0.66, C:0.07, G:0.01, T:0.26
Consensus pattern (40 bp):
TTAAAACAAATATTAAAACAAAAAACAAATTAAAAATATA
Found at i:114007099 original size:29 final size:27
Alignment explanation
Indices: 114007052--114007106 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 27
114007042 AAATATAATA
* *
114007052 AAAATTAATTATATTAAAATTAAAAAT
1 AAAATTAAATATATTAAAAATAAAAAT
114007079 AAAATATAAATATGATTAAAAATAAAAA
1 AAAAT-TAAATAT-ATTAAAAATAAAAA
114007107 ATATATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 5 0.21
28 6 0.25
29 13 0.54
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (27 bp):
AAAATTAAATATATTAAAAATAAAAAT
Found at i:114007116 original size:25 final size:23
Alignment explanation
Indices: 114007070--114007114 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
114007060 TTATATTAAA
114007070 ATTAAAAATAAAATATAAATATG
1 ATTAAAAATAAAATATAAATATG
* *
114007093 ATTAAAAATAAAAAATATATAT
1 ATTAAAAATAAAATATAAATAT
114007115 ATATTTAGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (23 bp):
ATTAAAAATAAAATATAAATATG
Found at i:114010010 original size:6 final size:6
Alignment explanation
Indices: 114009999--114010029 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
114009989 ATTGATGTAT
*
114009999 CTGCTC CTGCTC CTGCTC CTGCTT CTGCTC C
1 CTGCTC CTGCTC CTGCTC CTGCTC CTGCTC C
114010030 CACTGGCTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.16, T:0.35
Consensus pattern (6 bp):
CTGCTC
Found at i:114012427 original size:113 final size:113
Alignment explanation
Indices: 114012229--114012464 Score: 454
Period size: 113 Copynumber: 2.1 Consensus size: 113
114012219 ACATCATATG
**
114012229 ATCTTTCGGATATTATCAATATTCATATATTGTAATTTACCTTCAAATGATCAATCATAGTACTA
1 ATCTTTCTCATATTATCAATATTCATATATTGTAATTTACCTTCAAATGATCAATCATAGTACTA
114012294 ATCCAATTCATATTTCATTTAACCTAATCATATGTTATTATTTTATTA
66 ATCCAATTCATATTTCATTTAACCTAATCATATGTTATTATTTTATTA
114012342 ATCTTTCTCATATTATCAATATTCATATATTGTAATTTACCTTCAAATGATCAATCATAGTACTA
1 ATCTTTCTCATATTATCAATATTCATATATTGTAATTTACCTTCAAATGATCAATCATAGTACTA
114012407 ATCCAATTCATATTTCATTTAACCTAATCATATGTTATTATTTTATTA
66 ATCCAATTCATATTTCATTTAACCTAATCATATGTTATTATTTTATTA
114012455 ATCTTTCTCA
1 ATCTTTCTCA
114012465 GACTCAAGCC
Statistics
Matches: 121, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
113 121 1.00
ACGTcount: A:0.34, C:0.16, G:0.04, T:0.46
Consensus pattern (113 bp):
ATCTTTCTCATATTATCAATATTCATATATTGTAATTTACCTTCAAATGATCAATCATAGTACTA
ATCCAATTCATATTTCATTTAACCTAATCATATGTTATTATTTTATTA
Found at i:114027902 original size:29 final size:30
Alignment explanation
Indices: 114027870--114027932 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
114027860 AATAAAATTT
114027870 TAAAT-TAGTATTGAACCTTTTAAAAATGA
1 TAAATATAGTATTGAACCTTTTAAAAATGA
* * **
114027899 TAAATATTGTATTTAATTTTTTAAAAATGA
1 TAAATATAGTATTGAACCTTTTAAAAATGA
114027929 TAAA
1 TAAA
114027933 AATTTCTAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 5 0.17
30 24 0.83
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.43
Consensus pattern (30 bp):
TAAATATAGTATTGAACCTTTTAAAAATGA
Found at i:114030517 original size:21 final size:23
Alignment explanation
Indices: 114030470--114030523 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
114030460 CATTCAAGAT
**
114030470 AAAATAATATATAAAACTCTTTA
1 AAAATAATATATAAAACTAATTA
*
114030493 AAAATAATATAT-AAAC-AATTC
1 AAAATAATATATAAAACTAATTA
114030514 AAAAT-ATATA
1 AAAATAATATA
114030524 ATGTGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 7 0.25
22 4 0.14
23 12 0.43
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:114030767 original size:29 final size:29
Alignment explanation
Indices: 114030682--114030767 Score: 81
Period size: 28 Copynumber: 3.0 Consensus size: 29
114030672 AATAAGAGTG
*
114030682 AAAAATAT-ATATA-AGAAAAATAATAAT
1 AAAAATATAATATATAGAAATATAATAAT
* * *
114030709 GAAAAAAATATTAGTATATAAATA-AA-AAT
1 -AAAAATATAATA-TATAGAAATATAATAAT
*
114030738 AAAAATATAATAAATAGAAATATAATAAT
1 AAAAATATAATATATAGAAATATAATAAT
114030767 A
1 A
114030768 GTAGAAATAT
Statistics
Matches: 45, Mismatches: 8, Indels: 9
0.73 0.13 0.15
Matches are distributed among these distances:
27 8 0.18
28 19 0.42
29 9 0.20
30 4 0.09
31 5 0.11
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.27
Consensus pattern (29 bp):
AAAAATATAATATATAGAAATATAATAAT
Found at i:114030799 original size:15 final size:14
Alignment explanation
Indices: 114030726--114030854 Score: 79
Period size: 15 Copynumber: 8.9 Consensus size: 14
114030716 ATATTAGTAT
114030726 ATAAATAAAAATA-
1 ATAAATAAAAATAG
*
114030739 AAAATATAATAAATAG
1 ATAA-ATAA-AAATAG
*
114030755 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
114030769 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
114030784 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
*
114030799 ATAAATAATAATAG
1 ATAAATAAAAATAG
*
114030813 TATTAGAATAACAA-A-
1 -A-TA-AATAAAAATAG
*
114030828 ATAAATATAAATAG
1 ATAAATAAAAATAG
114030842 A-AACATAAAAATA
1 ATAA-ATAAAAATA
114030855 ATAGCAATAA
Statistics
Matches: 93, Mismatches: 11, Indels: 23
0.73 0.09 0.18
Matches are distributed among these distances:
12 6 0.06
13 8 0.09
14 31 0.33
15 35 0.38
16 6 0.06
17 7 0.08
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.26
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:114030812 original size:58 final size:59
Alignment explanation
Indices: 114030726--114030853 Score: 138
Period size: 58 Copynumber: 2.2 Consensus size: 59
114030716 ATATTAGTAT
* * **
114030726 ATAAATAAAAA-TAAAAATATAATAAATAGAAATATAATAATAGTAGAAATATAAATAG
1 ATAAATAAAAATTAAAAATATAATAAATAGAAATAGAATAACAAAAGAAATATAAATAG
* * * *
114030784 ATAAATAAAAATTAGATAA-ATAAT-AATAGTATTAGAATAACAAAATAAATATAAATAG
1 ATAAATAAAAATTA-AAAATATAATAAATAGAAATAGAATAACAAAAGAAATATAAATAG
114030842 A-AACATAAAAAT
1 ATAA-ATAAAAAT
114030854 AATAGCAATA
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
57 2 0.03
58 47 0.80
59 7 0.12
60 3 0.05
ACGTcount: A:0.66, C:0.02, G:0.06, T:0.26
Consensus pattern (59 bp):
ATAAATAAAAATTAAAAATATAATAAATAGAAATAGAATAACAAAAGAAATATAAATAG
Found at i:114031270 original size:35 final size:34
Alignment explanation
Indices: 114031216--114031287 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 34
114031206 AATTGAAAGA
*
114031216 GAAAAGAAAATAATTCAATTCC-AATGGAAATAG
1 GAAAAGAAAATAATCCAATTCCGAATGGAAATAG
*
114031249 GAAAAGAGAGAATAATCCAATTCCGAATTGAAATAG
1 GAAAAGA-A-AATAATCCAATTCCGAATGGAAATAG
114031285 GAA
1 GAA
114031288 TCCCAAAGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
33 7 0.21
34 1 0.03
35 13 0.38
36 13 0.38
ACGTcount: A:0.53, C:0.10, G:0.18, T:0.19
Consensus pattern (34 bp):
GAAAAGAAAATAATCCAATTCCGAATGGAAATAG
Found at i:114031425 original size:6 final size:5
Alignment explanation
Indices: 114031388--114031423 Score: 54
Period size: 5 Copynumber: 6.8 Consensus size: 5
114031378 AAATAATTAA
114031388 AAAAT AAAAT AAAAT AAAAT AAAAT CAAAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT --AAAAT AAAA
114031424 ATCACATCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 24 0.83
7 5 0.17
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:114032002 original size:88 final size:84
Alignment explanation
Indices: 114031791--114032196 Score: 242
Period size: 84 Copynumber: 4.8 Consensus size: 84
114031781 ATCTGATCCG
* * * * * *
114031791 CTACTGCTTAGGGAGATATGATTTGTAATCTTC-AGCCCGTTTCCGTGCTACTTAGGAGGATAAG
1 CTACTGCTTAGGGAGATAAGATCTGTAAT-TTCTAGCCTGTTTCC-TACTGCTTAGGGGGATAAG
*
114031855 GCTAGTCTTCAATCCGCTCCA
64 GCTAGTCTACAATCCGCTCCA
* *
114031876 CTACT-CTTAGGGAGATAAAATCTGTAATTT-TCAACCTGTTTACCTACTGCTTAGGGGGATAAG
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTCT-AGCCTGTTT-CCTACTGCTTAGGGGGATAAG
* **
114031939 GCTCACCGTCTACGATCTTC-CCTA
64 GCT-A--GTCTACAATCCGCTCC-A
* * *
114031963 CTACTGCTTAGGGAGATAAGATCTATAATTTCTAGCCTGTTTCCCTCCTGCTTAGGGGGTTAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTCTAGCCTGTTT-CCTACTGCTTAGGGGGATAAGG
* * * *
114032028 CTTATGATCTTCGATCTGTTCCA
65 C-TA-G-TCTACAATCCGCTCCA
* * * * * * * *
114032051 GTACTGTTTAGGG-G---GGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGA
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTCTAGCCTGTT-TCCTACTGCTTAGGGGGATAAGG
* * **
114032112 CTTGGGTCTTCAATCTACTCCA
65 C-T-AGTCTACAATCCGCTCCA
* * * * * * *
114032134 CTACTGTTTAAGG-G---AGATCTGTATTTTCCAGCCTGTTACCCTACTACTTAGGGGGTTAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTCTAGCCTGTT-TCCTACTGCTTAGGGGGATAAGG
114032195 CT
65 CT
114032197 TGCTGTCTTT
Statistics
Matches: 267, Mismatches: 40, Indels: 31
0.79 0.12 0.09
Matches are distributed among these distances:
82 1 0.00
83 72 0.27
84 89 0.33
85 8 0.03
86 2 0.01
87 17 0.06
88 74 0.28
89 4 0.01
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.34
Consensus pattern (84 bp):
CTACTGCTTAGGGAGATAAGATCTGTAATTTCTAGCCTGTTTCCTACTGCTTAGGGGGATAAGGC
TAGTCTACAATCCGCTCCA
Found at i:114032109 original size:84 final size:84
Alignment explanation
Indices: 114031902--114032876 Score: 1307
Period size: 84 Copynumber: 11.6 Consensus size: 84
114031892 AAAATCTGTA
* * ** * * *
114031902 ATTTT-CAACCTGTTTA-CCTACTGCTTAGGGGGATAAGGCTCACCGTCTACGATCTTC-CCTAC
1 ATTTTCCAGCCTG-TTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCC-AC
*
114031964 TACTGCTTAGGGAGATAAGATCTAT
64 TACTGTTTAGGG-G---AGATCTAT
* * * * * * *
114031989 AATTTCTAGCCTGTTTCCCTCCTGCTTAGGGGGTTAAGGCTT-ATGATCTTCGATCTGTTCCAGT
1 ATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTG-TCTTCGATCTGCTCCACT
* *
114032053 ACTGTTTAGGGGGGATCTGT
65 ACTGTTTAGGGGAGATCTAT
* * * *
114032073 ATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGACTTG-GGTCTTCAATCTACTCCACTA
1 ATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTA
* *
114032137 CTGTTTAAGGGAGATCTGT
66 CTGTTTAGGGGAGATCTAT
* *
114032156 ATTTTCCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTGTCTTTGATCTGCTCCACTA
1 ATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTA
* * *
114032221 CTGTTTAGGGGAAATTTAC
66 CTGTTTAGGGGAGATCTAT
* * *
114032240 ATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTATCTTAGATCTGTTCCACTA
1 ATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTA
*
114032305 CTGTTTAGGGGAGATCTGT
66 CTGTTTAGGGGAGATCTAT
** * * *
114032324 ATTTTCCAGCCTGTTACCCTACTGCTTAAAGGGTTAAGACTTGCTGTCTTAGATCTGCTCCACCA
1 ATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTA
114032389 CTGTTTA-GGGAGATCTAT
66 CTGTTTAGGGGAGATCTAT
* * *
114032407 ATTTTCCAGCCTGTTACCCTACTACTTAGAGGGTTAAGGCTTGCTGTCTTCGATTTGCTCCACTA
1 ATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTA
114032472 CTGTTTAGGGGAGATCTAT
66 CTGTTTAGGGGAGATCTAT
*
114032491 ATTTTCCAGCCTGTTACCCTACTGCTTA-GGGGTTAAGGCTTGCTGTCTTCGATCTTCTCCACTA
1 ATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTA
114032555 CTGTTTAGGGGAGATCTAT
66 CTGTTTAGGGGAGATCTAT
* *
114032574 ATTTTCCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTACTCCACTA
1 ATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTA
*
114032639 CTGTTTAGGGGAGATTTAT
66 CTGTTTAGGGGAGATCTAT
* * * *
114032658 ATTTTTCAACCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTGTCTTTGATCTGCTCCACTA
1 ATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTA
* * *
114032723 CTATCTAGGGGAAATCTAT
66 CTGTTTAGGGGAGATCTAT
* * * *
114032742 ATTTTCCAGCCTGTTACCCTACTGCCTAGGGGGTTAAGGCTTGTTATCTTCGATCTACTCCACTA
1 ATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTA
*
114032807 CTGTTTAGGGGAGATCTGT
66 CTGTTTAGGGGAGATCTAT
* * *
114032826 ATTTTCTAGCCTGTTACCCTACTGCTTAAGGGGTTAAGGCTTGCTATCTTC
1 ATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTC
114032877 AACCTGTTCT
Statistics
Matches: 789, Mismatches: 91, Indels: 19
0.88 0.10 0.02
Matches are distributed among these distances:
83 228 0.29
84 503 0.64
87 8 0.01
88 48 0.06
89 2 0.00
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (84 bp):
ATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTA
CTGTTTAGGGGAGATCTAT
Found at i:114032306 original size:44 final size:44
Alignment explanation
Indices: 114032166--114032315 Score: 109
Period size: 44 Copynumber: 3.5 Consensus size: 44
114032156 ATTTTCCAGC
* * *
114032166 CTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTGTCTTTGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTATCTTAGAT
* * ** * * *
114032210 CTGCT-CCACTACTGTTTA-GGGG--AA-ATTTAC-ATTTTCCAG-C
1 CTGTTACC-CTACTGCTTAGGGGGTTAAGGCTTGCTATCTT--AGAT
114032250 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTATCTTAGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTATCTTAGAT
*
114032294 CTGTT-CCACTACTGTTTAGGGG
1 CTGTTACC-CTACTGCTTAGGGG
114032316 AGATCTGTAT
Statistics
Matches: 77, Mismatches: 18, Indels: 22
0.66 0.15 0.19
Matches are distributed among these distances:
39 3 0.04
40 16 0.21
41 9 0.12
43 12 0.16
44 33 0.43
45 4 0.05
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTATCTTAGAT
Found at i:114032309 original size:251 final size:252
Alignment explanation
Indices: 114031983--114032878 Score: 1372
Period size: 251 Copynumber: 3.6 Consensus size: 252
114031973 GGGAGATAAG
* * * * *
114031983 ATCTATAATTTCTAGCCTGTTTCCCTCCTGCTTAGGGGGTTAAGGCTT-ATGATCTTCGATCTGT
1 ATCTATATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCT-ATCTTCGATCTGT
* * *
114032047 TCCAGTACTGTTTAGGGGGGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGA
65 TCCACTACTGTTTAGGGGAGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAAGGGGTTAAGA
* *
114032112 CTTG-GGTCTTCAATCTACTCCACTACTGTTTAAGGGAGATCTGTATTTTCCAGCCTGTTACCCT
130 CTTGCTGTCTTCAATCTACTCCACTACTGTTTAAGGGAGATCTATATTTTCCAGCCTGTTACCCT
114032176 ACTACTTAGGGGGTTAAGGCTTGCTGTCTTTGATCTGCTCCACTACTGTTTAGGGGAA
195 ACTACTTAGGGGGTTAAGGCTTGCTGTCTTTGATCTGCTCCACTACTGTTTAGGGGAA
* * *
114032234 ATTTACATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTATCTTAGATCTGTT
1 ATCTATATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTATCTTCGATCTGTT
*
114032299 CCACTACTGTTTAGGGGAGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAAAGGGTTAAGAC
66 CCACTACTGTTTAGGGGAGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAAGGGGTTAAGAC
* *
114032364 TTGCTGTCTT-AGATCTGCTCCACCACTGTTT-AGGGAGATCTATATTTTCCAGCCTGTTACCCT
131 TTGCTGTCTTCA-ATCTACTCCACTACTGTTTAAGGGAGATCTATATTTTCCAGCCTGTTACCCT
* * * *
114032427 ACTACTTAGAGGGTTAAGGCTTGCTGTCTTCGATTTGCTCCACTACTGTTTAGGGGAG
195 ACTACTTAGGGGGTTAAGGCTTGCTGTCTTTGATCTGCTCCACTACTGTTTAGGGGAA
*
114032485 ATCTATATTTTCCAGCCTGTTACCCTACTGCTTA-GGGGTTAAGGCTTGCTGTCTTCGATCT-TC
1 ATCTATATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTATCTTCGATCTGT-
* * * *
114032548 TCCACTACTGTTTAGGGGAGATCTATATTTTCCAACCTGTTACCCTACTGCTTAGGGGGTTAAGG
65 TCCACTACTGTTTAGGGGAGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAAGGGGTTAAGA
* * * * *
114032613 CTTGCTGTCTTCGATCTACTCCACTACTGTTTAGGGGAGATTTATATTTTTCAACCTGTTACCCT
130 CTTGCTGTCTTCAATCTACTCCACTACTGTTTAAGGGAGATCTATATTTTCCAGCCTGTTACCCT
* *
114032678 ACTACTTAGGGGGTTAAGGCTTGCTGTCTTTGATCTGCTCCACTACTATCTAGGGGAA
195 ACTACTTAGGGGGTTAAGGCTTGCTGTCTTTGATCTGCTCCACTACTGTTTAGGGGAA
* * **
114032736 ATCTATATTTTCCAGCCTGTTACCCTACTGCCTAGGGGGTTAAGGCTTGTTATCTTCGATCTACT
1 ATCTATATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTATCTTCGATCTGTT
* *
114032801 CCACTACTGTTTAGGGGAGATCTGTATTTTCTAGCCTGTTACCCTACTGCTTAAGGGGTTAAGGC
66 CCACTACTGTTTAGGGGAGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAAGGGGTTAAGAC
*
114032866 TTGCTATCTTCAA
131 TTGCTGTCTTCAA
114032879 CCTGTTCTCT
Statistics
Matches: 585, Mismatches: 52, Indels: 15
0.90 0.08 0.02
Matches are distributed among these distances:
249 1 0.00
250 113 0.19
251 350 0.60
252 121 0.21
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (252 bp):
ATCTATATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTATCTTCGATCTGTT
CCACTACTGTTTAGGGGAGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAAGGGGTTAAGAC
TTGCTGTCTTCAATCTACTCCACTACTGTTTAAGGGAGATCTATATTTTCCAGCCTGTTACCCTA
CTACTTAGGGGGTTAAGGCTTGCTGTCTTTGATCTGCTCCACTACTGTTTAGGGGAA
Found at i:114032514 original size:40 final size:39
Alignment explanation
Indices: 114032469--114032605 Score: 102
Period size: 40 Copynumber: 3.4 Consensus size: 39
114032459 ATTTGCTCCA
*
114032469 CTACTGTTTAGGGGAGATCTATATTTTCCAGCCTGTTACC
1 CTACTGCTTAGGGGAGATCTATATTTTCCA-CCTGTTACC
* * * *
114032509 CTACTGCTTAGGGGTTA-AGGCT-TGCTGTCTTCGATCT-TCT-CC
1 CTACTGCTTAGGGG--AGA-TCTAT-AT-T-TTCCACCTGT-TACC
*
114032551 ACTACTGTTTAGGGGAGATCTATATTTTCCAACCTGTTACC
1 -CTACTGCTTAGGGGAGATCTATATTTTCC-ACCTGTTACC
114032592 CTACTGCTTAGGGG
1 CTACTGCTTAGGGG
114032606 GTTAAGGCTT
Statistics
Matches: 73, Mismatches: 11, Indels: 26
0.66 0.10 0.24
Matches are distributed among these distances:
39 3 0.04
40 31 0.42
41 9 0.12
42 9 0.12
43 17 0.23
44 4 0.05
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.36
Consensus pattern (39 bp):
CTACTGCTTAGGGGAGATCTATATTTTCCACCTGTTACC
Found at i:114032758 original size:418 final size:419
Alignment explanation
Indices: 114031981--114032876 Score: 1332
Period size: 418 Copynumber: 2.1 Consensus size: 419
114031971 TAGGGAGATA
* * * * *
114031981 AGATCTATAATTTCTAGCCTGTTTCCCTCCTGCTTAGGGGGTTAAGGCTT-ATGATCTTCGATCT
1 AGATCTATATTTTCTAGCCTGTTACCCTACTGCTTAGAGGGTTAAGGCTTGCTG-TCTTCGATCT
* * * *
114032045 GTTCCAGTACTGTTTAGGGGGGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAA
65 GCTCCACTACTGTTTAGGGGAGATCTATATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAA
* *
114032110 GACTTGGGTCTTCAATCTACTCCACTACTGTTTAAGGGAGATCTGTATTTTCCAGCCTGTTACCC
130 GACTTGGGTCTTCAATCTACTCCACTACTGTTTAAGGGAGATCTATATTTTCCAACCTGTTACCC
* *
114032175 TACTACTTAGGGGGTTAAGGCTTGCTGTCTTTGATCTGCTCCACTACTGTTTAGGGGAAATTTAC
195 TACTACTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTACTCCACTACTGTTTAGGGGAAATTTAC
* * *
114032240 ATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTATCTTAGATCTGTTCCACTA
260 ATTTTCCAACCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTATCTTAGATCTGCTCCACTA
* * * * * *
114032305 CTGTTTAGGGGAGATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAAAGGGTTAAGACTTGCTG
325 CTATCTAGGGGAAATCTATATTTTCCAGCCTGTTACCCTACTGCCTAAAGGGTTAAGACTTGCTA
*
114032370 TCTTAGATCTGCTCCACCACTGTTTA-GGG
390 TCTTAGATCTACTCCACCACTGTTTAGGGG
* * *
114032399 AGATCTATATTTTCCAGCCTGTTACCCTACTACTTAGAGGGTTAAGGCTTGCTGTCTTCGATTTG
1 AGATCTATATTTTCTAGCCTGTTACCCTACTGCTTAGAGGGTTAAGGCTTGCTGTCTTCGATCTG
114032464 CTCCACTACTGTTTAGGGGAGATCTATATTTTCCAGCCTGTTACCCTACTGCTTA-GGGGTTAAG
66 CTCCACTACTGTTTAGGGGAGATCTATATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAG
* * * * *
114032528 GCTTGCTGTCTTCGATCTTCTCCACTACTGTTTAGGGGAGATCTATATTTTCCAACCTGTTACCC
131 ACTTG-GGTCTTCAATCTACTCCACTACTGTTTAAGGGAGATCTATATTTTCCAACCTGTTACCC
* * *
114032593 TACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTACTCCACTACTGTTTAGGGGAGATTTAT
195 TACTACTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTACTCCACTACTGTTTAGGGGAAATTTAC
* * *
114032658 ATTTTTCAACCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTGTCTTTGATCTGCTCCACTA
260 ATTTTCCAACCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTATCTTAGATCTGCTCCACTA
** * *
114032723 CTATCTAGGGGAAATCTATATTTTCCAGCCTGTTACCCTACTGCCTAGGGGGTTAAGGCTTGTTA
325 CTATCTAGGGGAAATCTATATTTTCCAGCCTGTTACCCTACTGCCTAAAGGGTTAAGACTTGCTA
* *
114032788 TCTTCGATCTACTCCACTACTGTTTAGGGG
390 TCTTAGATCTACTCCACCACTGTTTAGGGG
* *
114032818 AGATCTGTATTTTCTAGCCTGTTACCCTACTGCTTA-AGGGGTTAAGGCTTGCTATCTTC
1 AGATCTATATTTTCTAGCCTGTTACCCTACTGCTTAGA-GGGTTAAGGCTTGCTGTCTTC
114032877 AACCTGTTCT
Statistics
Matches: 427, Mismatches: 47, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
417 13 0.03
418 356 0.83
419 58 0.14
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (419 bp):
AGATCTATATTTTCTAGCCTGTTACCCTACTGCTTAGAGGGTTAAGGCTTGCTGTCTTCGATCTG
CTCCACTACTGTTTAGGGGAGATCTATATTTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAG
ACTTGGGTCTTCAATCTACTCCACTACTGTTTAAGGGAGATCTATATTTTCCAACCTGTTACCCT
ACTACTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTACTCCACTACTGTTTAGGGGAAATTTACA
TTTTCCAACCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTATCTTAGATCTGCTCCACTAC
TATCTAGGGGAAATCTATATTTTCCAGCCTGTTACCCTACTGCCTAAAGGGTTAAGACTTGCTAT
CTTAGATCTACTCCACCACTGTTTAGGGG
Found at i:114034716 original size:11 final size:11
Alignment explanation
Indices: 114034684--114034717 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
114034674 CCCCACGATC
114034684 TTTTTTCCTTT
1 TTTTTTCCTTT
*
114034695 TTTCTTCCTTT
1 TTTTTTCCTTT
*
114034706 TTTTTTGCTTT
1 TTTTTTCCTTT
114034717 T
1 T
114034718 GTTGTGCCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (11 bp):
TTTTTTCCTTT
Found at i:114039134 original size:24 final size:26
Alignment explanation
Indices: 114039106--114039156 Score: 88
Period size: 24 Copynumber: 2.0 Consensus size: 26
114039096 ATTTTAATTT
114039106 AAGAAAACATGGACA-AA-ATTTCAA
1 AAGAAAACATGGACACAACATTTCAA
114039130 AAGAAAACATGGACACAACATTTCAA
1 AAGAAAACATGGACACAACATTTCAA
114039156 A
1 A
114039157 CCCTCGATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 15 0.60
25 2 0.08
26 8 0.32
ACGTcount: A:0.57, C:0.16, G:0.12, T:0.16
Consensus pattern (26 bp):
AAGAAAACATGGACACAACATTTCAA
Found at i:114039288 original size:207 final size:207
Alignment explanation
Indices: 114038933--114039341 Score: 809
Period size: 207 Copynumber: 2.0 Consensus size: 207
114038923 CAGCTTGATA
114038933 GGACACAACATTTCAAACCCTCGATACAAGATCATCTTATAATTTCCAAAACTCATGCATTTAAA
1 GGACACAACATTTCAAACCCTCGATACAAGATCATCTTATAATTTCCAAAACTCATGCATTTAAA
*
114038998 ATTTCAAAAGGATATTTGGCTATCTGGTGACACGGTAAGTCGAAACCCAGCACGATTGGGCACGA
66 ATTTCAAAAGGATATTTGGCTATCTGGTGACACGGTAAGTCGAAACCCAGCACAATTGGGCACGA
114039063 TTTCTCGAATTTATAAGCACAAAATATTGCCTCATTTTAATTTAAGAAAACATGGACAAAATTTC
131 TTTCTCGAATTTATAAGCACAAAATATTGCCTCATTTTAATTTAAGAAAACATGGACAAAATTTC
114039128 AAAAGAAAACAT
196 AAAAGAAAACAT
114039140 GGACACAACATTTCAAACCCTCGATACAAGATCATCTTATAATTTCCAAAACTCATGCATTTAAA
1 GGACACAACATTTCAAACCCTCGATACAAGATCATCTTATAATTTCCAAAACTCATGCATTTAAA
114039205 ATTTCAAAAGGATATTTGGCTATCTGGTGACACGGTAAGTCGAAACCCAGCACAATTGGGCACGA
66 ATTTCAAAAGGATATTTGGCTATCTGGTGACACGGTAAGTCGAAACCCAGCACAATTGGGCACGA
114039270 TTTCTCGAATTTATAAGCACAAAATATTGCCTCATTTTAATTTAAGAAAACATGGACAAAATTTC
131 TTTCTCGAATTTATAAGCACAAAATATTGCCTCATTTTAATTTAAGAAAACATGGACAAAATTTC
114039335 AAAAGAA
196 AAAAGAA
114039342 TATTCAGTTA
Statistics
Matches: 201, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
207 201 1.00
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (207 bp):
GGACACAACATTTCAAACCCTCGATACAAGATCATCTTATAATTTCCAAAACTCATGCATTTAAA
ATTTCAAAAGGATATTTGGCTATCTGGTGACACGGTAAGTCGAAACCCAGCACAATTGGGCACGA
TTTCTCGAATTTATAAGCACAAAATATTGCCTCATTTTAATTTAAGAAAACATGGACAAAATTTC
AAAAGAAAACAT
Found at i:114039565 original size:23 final size:23
Alignment explanation
Indices: 114039518--114039582 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 23
114039508 CATTCAAGAT
* *
114039518 AAAATAATATATAAAACTCTTAA
1 AAAATAATATATAAAAATCTCAA
114039541 AAAATAATATATAAACAAT-TCAA
1 AAAATAATATATAAA-AATCTCAA
*
114039564 AATATATAATATGTAAAAA
1 AA-A-ATAATATATAAAAA
114039583 AAAGTTTGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
23 20 0.56
24 5 0.14
25 11 0.31
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (23 bp):
AAAATAATATATAAAAATCTCAA
Found at i:114039816 original size:23 final size:23
Alignment explanation
Indices: 114039750--114039816 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 23
114039740 TATAAGAAAA
*
114039750 ATAAT-AAT-GAAA-ATAATATT
1 ATAATAAATAGAAATATAATAAT
114039770 AGTATATAAATAGAAATA-AA-AAT
1 A-TA-ATAAATAGAAATATAATAAT
114039793 ATAATAAATAGAAATATAATAAT
1 ATAATAAATAGAAATATAATAAT
114039816 A
1 A
114039817 GTAGAAATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
20 1 0.03
21 15 0.38
22 6 0.15
23 10 0.26
24 6 0.15
25 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (23 bp):
ATAATAAATAGAAATATAATAAT
Found at i:114039831 original size:44 final size:44
Alignment explanation
Indices: 114039777--114039863 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
114039767 ATTAGTATAT
114039777 AAATAGAAATA-A-AAATATAATAAATAGA-AATATAATAATAGTAG
1 AAATAGAAATAGATAAATA-AA-AAATAGATAA-ATAATAATAGTAG
* *
114039821 AAATATAAATAGATAAATAAAAATTAGATAAATAATAATAGTA
1 AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTA
114039864 TTAGAATAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
44 28 0.74
45 5 0.13
46 5 0.13
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (44 bp):
AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTAG
Found at i:114039848 original size:15 final size:14
Alignment explanation
Indices: 114039775--114039903 Score: 70
Period size: 15 Copynumber: 8.9 Consensus size: 14
114039765 ATATTAGTAT
*
114039775 ATAAATAGAAATA-
1 ATAAATAAAAATAG
*
114039788 AAAATATAATAAATAG
1 ATAA-ATAA-AAATAG
*
114039804 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
114039818 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
114039833 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
*
114039848 ATAAATAATAATAG
1 ATAAATAAAAATAG
*
114039862 TATTAGAATAACAA-A-
1 -A-TA-AATAAAAATAG
*
114039877 ATAAATATAAATAG
1 ATAAATAAAAATAG
114039891 A-AACATAAAAATA
1 ATAA-ATAAAAATA
114039904 ATAGCAATAA
Statistics
Matches: 92, Mismatches: 12, Indels: 23
0.72 0.09 0.18
Matches are distributed among these distances:
12 6 0.07
13 8 0.09
14 30 0.33
15 35 0.38
16 6 0.07
17 7 0.08
ACGTcount: A:0.66, C:0.02, G:0.07, T:0.26
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:114039853 original size:29 final size:28
Alignment explanation
Indices: 114039796--114039903 Score: 73
Period size: 29 Copynumber: 3.8 Consensus size: 28
114039786 TAAAAATATA
* * *
114039796 ATAAATAGAAATATAATAATAGTAGAAAT
1 ATAAATAGAAACATAAAAATAG-ATAAAT
114039825 ATAAATAGATAA-ATAAAAATTAGATAAAT
1 ATAAATAGA-AACATAAAAA-TAGATAAAT
*
114039854 A-ATAATAGTATTAGA-ATAACAA-A-ATAAAT
1 ATA-AATAG-A--A-ACATAAAAATAGATAAAT
114039883 ATAAATAGAAACATAAAAATA
1 ATAAATAGAAACATAAAAATA
114039904 ATAGCAATAA
Statistics
Matches: 66, Mismatches: 4, Indels: 20
0.73 0.04 0.22
Matches are distributed among these distances:
25 1 0.02
26 7 0.11
27 1 0.02
28 2 0.03
29 38 0.58
30 8 0.12
31 2 0.03
32 7 0.11
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (28 bp):
ATAAATAGAAACATAAAAATAGATAAAT
Found at i:114040454 original size:15 final size:15
Alignment explanation
Indices: 114040436--114040464 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
114040426 AATAATTTGA
114040436 TAATAAAATAAAATG
1 TAATAAAATAAAATG
114040451 TAATAAAATAAAAT
1 TAATAAAATAAAAT
114040465 AAAATCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (15 bp):
TAATAAAATAAAATG
Found at i:114040482 original size:6 final size:5
Alignment explanation
Indices: 114040437--114040480 Score: 52
Period size: 5 Copynumber: 8.4 Consensus size: 5
114040427 ATAATTTGAT
**
114040437 AATAA AATAA AATGT AATAA AATAA AATAA AATCAAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AATAA AAT--AA AATAA AA
114040481 ATCATATCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 28 0.85
7 5 0.15
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:114040703 original size:9 final size:10
Alignment explanation
Indices: 114040679--114040703 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
114040669 CTATTACAAT
114040679 GAAAAAATAA
1 GAAAAAATAA
114040689 GAAAAAATAA
1 GAAAAAATAA
114040699 GAAAA
1 GAAAA
114040704 TATTTTGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.08
Consensus pattern (10 bp):
GAAAAAATAA
Found at i:114043726 original size:41 final size:42
Alignment explanation
Indices: 114043644--114043876 Score: 200
Period size: 41 Copynumber: 5.5 Consensus size: 42
114043634 TCAACATCCT
* * ** *
114043644 AGACATGGTCTTACATGTTATCTCATATCGATGCCACTGTCCC
1 AGACATGGTCTTACACGTAATCAAATA-CGATGCCAATGTCCC
* *
114043687 AGACAAGGTCTTACTCG-AATCAAATACGATGCCAATGTCCC
1 AGACATGGTCTTACACGTAATCAAATACGATGCCAATGTCCC
* * * ** *
114043728 AGACATGGTCTTACACGTAACCACATGGAATGATGCCAACATTCC
1 AGACATGGTCTTACACGTAATCAAAT---ACGATGCCAATGTCCC
* * * ** *
114043773 AGACGTTGTCTTACACGTTATCTCATATCGATGCCACTGTCCC
1 AGACATGGTCTTACACGTAATCAAATA-CGATGCCAATGTCCC
* * *
114043816 AGACATGGTCTTACTCG-AATCAAATATGACGCCAATGTCCC
1 AGACATGGTCTTACACGTAATCAAATACGATGCCAATGTCCC
*
114043857 AGACATGGTCTTACATGTAA
1 AGACATGGTCTTACACGTAA
114043877 CCACATATCA
Statistics
Matches: 148, Mismatches: 36, Indels: 13
0.75 0.18 0.07
Matches are distributed among these distances:
41 56 0.38
42 21 0.14
43 38 0.26
45 33 0.22
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (42 bp):
AGACATGGTCTTACACGTAATCAAATACGATGCCAATGTCCC
Found at i:114050479 original size:17 final size:19
Alignment explanation
Indices: 114050441--114050482 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
114050431 CGCTTTTAAA
*
114050441 ATTTGTCTATTTATTATTT
1 ATTTGTATATTTATTATTT
114050460 ATTTGTATA-TTATT-TTT
1 ATTTGTATATTTATTATTT
114050477 ATTTGT
1 ATTTGT
114050483 TCTTTGTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.41
18 5 0.23
19 8 0.36
ACGTcount: A:0.21, C:0.02, G:0.07, T:0.69
Consensus pattern (19 bp):
ATTTGTATATTTATTATTT
Found at i:114050996 original size:22 final size:22
Alignment explanation
Indices: 114050954--114050999 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
114050944 TATTTTATAC
114050954 ATTTTACATTTTAATTAATTTA
1 ATTTTACATTTTAATTAATTTA
*
114050976 ATTTTA-ATTTTAATATTATTTA
1 ATTTTACATTTTAAT-TAATTTA
114050998 AT
1 AT
114051000 AAAAAAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (22 bp):
ATTTTACATTTTAATTAATTTA
Found at i:114058034 original size:60 final size:60
Alignment explanation
Indices: 114057966--114058085 Score: 240
Period size: 60 Copynumber: 2.0 Consensus size: 60
114057956 TTAGCCATCA
114057966 TCAAAATTGGTAATCTTTTCGATTCATATTTTAGAATTTTTTTCATTGTAAAGATGCTTT
1 TCAAAATTGGTAATCTTTTCGATTCATATTTTAGAATTTTTTTCATTGTAAAGATGCTTT
114058026 TCAAAATTGGTAATCTTTTCGATTCATATTTTAGAATTTTTTTCATTGTAAAGATGCTTT
1 TCAAAATTGGTAATCTTTTCGATTCATATTTTAGAATTTTTTTCATTGTAAAGATGCTTT
114058086 ACTTCAACTT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (60 bp):
TCAAAATTGGTAATCTTTTCGATTCATATTTTAGAATTTTTTTCATTGTAAAGATGCTTT
Found at i:114061705 original size:14 final size:14
Alignment explanation
Indices: 114061686--114061712 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
114061676 ATTACCTATA
114061686 AAACAATTTCTCTT
1 AAACAATTTCTCTT
114061700 AAACAATTTCTCT
1 AAACAATTTCTCT
114061713 ATTAAGTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (14 bp):
AAACAATTTCTCTT
Found at i:114063548 original size:18 final size:18
Alignment explanation
Indices: 114063520--114063555 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
114063510 AACAAAACAA
114063520 AAAATTCTGGAAAAATATG
1 AAAATTCTGG-AAAATATG
114063539 AAAATT-TGGAAAATATG
1 AAAATTCTGGAAAATATG
114063556 GGTTACACAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 3 0.18
19 6 0.35
ACGTcount: A:0.53, C:0.03, G:0.17, T:0.28
Consensus pattern (18 bp):
AAAATTCTGGAAAATATG
Found at i:114064897 original size:20 final size:20
Alignment explanation
Indices: 114064872--114064939 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 20
114064862 GATGCATAAT
114064872 AGAGGCACCGAAGTGCAGAA
1 AGAGGCACCGAAGTGCAGAA
* * *
114064892 AGAGGCACGGATGTGCA-ATC
1 AGAGGCACCGAAGTGCAGA-A
* * * *
114064912 GGAGGAACCGAAGTGTAGAT
1 AGAGGCACCGAAGTGCAGAA
114064932 AGAGGCAC
1 AGAGGCAC
114064940 TAAAGTGCAA
Statistics
Matches: 35, Mismatches: 11, Indels: 4
0.70 0.22 0.08
Matches are distributed among these distances:
19 1 0.03
20 33 0.94
21 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.37, T:0.10
Consensus pattern (20 bp):
AGAGGCACCGAAGTGCAGAA
Found at i:114064948 original size:40 final size:40
Alignment explanation
Indices: 114064873--114064949 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
114064863 ATGCATAATA
* * *
114064873 GAGGCACCGAAGTGCAGAAAGAGGCACGGATGTGCAATCG
1 GAGGAACCGAAGTGCAGAAAGAGGCACGAAAGTGCAATCG
* * *
114064913 GAGGAACCGAAGTGTAGATAGAGGCACTAAAGTGCAA
1 GAGGAACCGAAGTGCAGAAAGAGGCACGAAAGTGCAA
114064950 ACCCATGCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.36, C:0.17, G:0.35, T:0.12
Consensus pattern (40 bp):
GAGGAACCGAAGTGCAGAAAGAGGCACGAAAGTGCAATCG
Found at i:114069037 original size:76 final size:76
Alignment explanation
Indices: 114068911--114069062 Score: 286
Period size: 76 Copynumber: 2.0 Consensus size: 76
114068901 TCAGTTTCCT
* *
114068911 TATAATGGAACTTACATAGAGCTTTCATAGCTCACCCCCCTTATGTTCCTTTTCTATAGAGAACT
1 TATAATGGAACTCACATAGAGCTTTCATAACTCACCCCCCTTATGTTCCTTTTCTATAGAGAACT
114068976 CACAAGGTTAG
66 CACAAGGTTAG
114068987 TATAATGGAACTCACATAGAGCTTTCATAACTCACCCCCCTTATGTTCCTTTTCTATAGAGAACT
1 TATAATGGAACTCACATAGAGCTTTCATAACTCACCCCCCTTATGTTCCTTTTCTATAGAGAACT
114069052 CACAAGGTTAG
66 CACAAGGTTAG
114069063 GATGCGGATG
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (76 bp):
TATAATGGAACTCACATAGAGCTTTCATAACTCACCCCCCTTATGTTCCTTTTCTATAGAGAACT
CACAAGGTTAG
Found at i:114070353 original size:20 final size:20
Alignment explanation
Indices: 114070307--114070346 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
114070297 ATTAATTCCA
* *
114070307 AATTTGTATATTATTTTAAT
1 AATTTATATATTAATTTAAT
114070327 AATTTATATATTAATTTAAT
1 AATTTATATATTAATTTAAT
114070347 TTTTTATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (20 bp):
AATTTATATATTAATTTAAT
Found at i:114070664 original size:31 final size:30
Alignment explanation
Indices: 114070607--114070675 Score: 84
Period size: 31 Copynumber: 2.3 Consensus size: 30
114070597 GATACATGAC
*
114070607 TTTGATTTGGTGTAATTGTATACATAAAAT
1 TTTGATTTGGTGTAAATGTATACATAAAAT
* * *
114070637 TTTGATTGTGGTTTAAATGTATTCATAAAAC
1 TTTGATT-TGGTGTAAATGTATACATAAAAT
*
114070668 ATTGATTT
1 TTTGATTT
114070676 TGATTTAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
30 8 0.24
31 25 0.76
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.48
Consensus pattern (30 bp):
TTTGATTTGGTGTAAATGTATACATAAAAT
Found at i:114070683 original size:31 final size:31
Alignment explanation
Indices: 114070623--114070692 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
114070613 TTGGTGTAAT
** *
114070623 TGTATACATAAAATTTTGATTGTGGTTTAAA
1 TGTATACATAAAACATTGATTGTGATTTAAA
* *
114070654 TGTATTCATAAAACATTGATTTTGATTT-AA
1 TGTATACATAAAACATTGATTGTGATTTAAA
114070684 T-TATACATA
1 TGTATACATA
114070693 TTTAAAGAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 7 0.21
30 3 0.09
31 23 0.70
ACGTcount: A:0.37, C:0.06, G:0.11, T:0.46
Consensus pattern (31 bp):
TGTATACATAAAACATTGATTGTGATTTAAA
Found at i:114071568 original size:3 final size:3
Alignment explanation
Indices: 114071554--114071991 Score: 81
Period size: 3 Copynumber: 146.3 Consensus size: 3
114071544 AATAAGACGG
* * * * *
114071554 ATA ATA AAA ATA ATA GTA ATA ATA A-A AAA AT- ATA ATG GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * *
114071600 TTA A-A AAA AGTA A-A TATA ATG ATG ATA ATA GTG TTA AAA ATA ATA
1 ATA ATA ATA A-TA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
114071645 ATA ATA A-A A-A ACA A-A CA-A CATA TTA ATG ATA ATA GAAA ATA ATG
1 ATA ATA ATA ATA ATA ATA -ATA -ATA ATA ATA ATA ATA -ATA ATA ATA
* *
114071689 ATG ATA ATA ATGGA AGTA ATGA A-A ATA ATA ATA ATA GA-A ACA ATA
1 ATA ATA ATA AT--A A-TA AT-A ATA ATA ATA ATA ATA -ATA ATA ATA
* * * *
114071734 GTA ATA A-A AGTA ATA ATA A-A ATA GAAA ATA ACA ATG ATA CATTA ATA
1 ATA ATA ATA A-TA ATA ATA ATA ATA -ATA ATA ATA ATA ATA -A-TA ATA
* * * * * *
114071781 ATA ATA AT- ATA TGTG CTA ATA ATA ATA ACA AT- ATA A-A AAA AGA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
114071824 GAAA ATA ATA CT- ATA TTA ATA AAA ATA ATA ATA GTA GGTTA ATA ATA
1 -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA ATA
* * * *
114071871 ATA GTA ATA AAA AGGTA A-A ATA ATA ATA A-A ATA ATA A-A ACA CT-
1 ATA ATA ATA ATA A--TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * *
114071914 ATT ATG TTA CTA CTA ATA ATA A-A AAA ACA GTA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
114071961 ATA ATA ATA ACA ACA ATA ATA TTA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
114071992 CATTCTCTCC
Statistics
Matches: 318, Mismatches: 79, Indels: 76
0.67 0.17 0.16
Matches are distributed among these distances:
2 35 0.11
3 254 0.80
4 20 0.06
5 8 0.03
6 1 0.00
ACGTcount: A:0.61, C:0.04, G:0.08, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:114071594 original size:22 final size:21
Alignment explanation
Indices: 114071554--114071608 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
114071544 AATAAGACGG
*
114071554 ATAATAAAAATAATAGTAATA
1 ATAAAAAAAATAATAGTAATA
*
114071575 ATAAAAAAATATAATGGTAATA
1 ATAAAAAAA-ATAATAGTAATA
114071597 ATATTAAAAAAA
1 ATA--AAAAAAA
114071609 GTAAATATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 8 0.28
22 14 0.48
23 1 0.03
24 6 0.21
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.27
Consensus pattern (21 bp):
ATAAAAAAAATAATAGTAATA
Found at i:114071853 original size:23 final size:23
Alignment explanation
Indices: 114071827--114071879 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
114071817 AAAAAGAGAA
*
114071827 AATAATACTATATTAATAAAAAT
1 AATAATACTAGATTAATAAAAAT
* * *
114071850 AATAATAGTAGGTTAATAATAAT
1 AATAATACTAGATTAATAAAAAT
*
114071873 AGTAATA
1 AATAATA
114071880 AAAAGGTAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.57, C:0.02, G:0.08, T:0.34
Consensus pattern (23 bp):
AATAATACTAGATTAATAAAAAT
Found at i:114071908 original size:19 final size:19
Alignment explanation
Indices: 114071863--114071909 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
114071853 AATAGTAGGT
*
114071863 TAATAATAATAGTAATAAAA
1 TAATAA-AATAATAATAAAA
*
114071883 -AGGTAAAATAATAATAAAA
1 TA-ATAAAATAATAATAAAA
114071902 TAATAAAA
1 TAATAAAA
114071910 CACTATTATG
Statistics
Matches: 22, Mismatches: 3, Indels: 5
0.73 0.10 0.17
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (19 bp):
TAATAAAATAATAATAAAA
Found at i:114072970 original size:45 final size:47
Alignment explanation
Indices: 114072915--114073009 Score: 126
Period size: 45 Copynumber: 2.1 Consensus size: 47
114072905 TTAATATTTA
114072915 AAAATAAAAAATAATAAAATTT-AT-TTTTAAAAATT-AAA-ATTAATT
1 AAAATAAAAAAT-AT-AAATTTAATATTTTAAAAATTAAAATATTAATT
* *
114072960 AAAATAAAAAATATAATTTTAATATTTTAAAATTTAAAATATTAATT
1 AAAATAAAAAATATAAATTTAATATTTTAAAAATTAAAATATTAATT
114073007 AAA
1 AAA
114073010 TACCAATATG
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
43 5 0.11
44 4 0.09
45 22 0.50
46 3 0.07
47 10 0.23
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (47 bp):
AAAATAAAAAATATAAATTTAATATTTTAAAAATTAAAATATTAATT
Found at i:114073011 original size:28 final size:28
Alignment explanation
Indices: 114072958--114073011 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
114072948 TTAAAATTAA
*
114072958 TTAAAATAAAAAATATAATTTTAATATT
1 TTAAAATAAAAAATATAATTTAAATATT
**
114072986 TTAAAATTTAAAATATTAA-TTAAATA
1 TTAAAATAAAAAATA-TAATTTAAATA
114073012 CCAATATGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 19 0.86
29 3 0.14
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (28 bp):
TTAAAATAAAAAATATAATTTAAATATT
Found at i:114073059 original size:28 final size:27
Alignment explanation
Indices: 114073028--114073085 Score: 91
Period size: 26 Copynumber: 2.1 Consensus size: 27
114073018 TGATATTTAC
114073028 ATGACAATAATAAAAAAATATAAATTGA
1 ATGA-AATAATAAAAAAATATAAATTGA
*
114073056 ATG-ATTAATAAAAAAATATAAATTGA
1 ATGAAATAATAAAAAAATATAAATTGA
114073082 ATGA
1 ATGA
114073086 TTAAAAGAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 25 0.89
28 3 0.11
ACGTcount: A:0.62, C:0.02, G:0.09, T:0.28
Consensus pattern (27 bp):
ATGAAATAATAAAAAAATATAAATTGA
Found at i:114073067 original size:26 final size:26
Alignment explanation
Indices: 114073035--114073089 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
114073025 TACATGACAA
114073035 TAATAAAAAAATATAAATTGAATGAT
1 TAATAAAAAAATATAAATTGAATGAT
114073061 TAATAAAAAAATATAAATTGAATGAT
1 TAATAAAAAAATATAAATTGAATGAT
114073087 TAA
1 TAA
114073090 AAGAGGTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (26 bp):
TAATAAAAAAATATAAATTGAATGAT
Found at i:114073885 original size:19 final size:19
Alignment explanation
Indices: 114073861--114073901 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
114073851 TAAGAGTCTA
* *
114073861 AAAAAAATGTTAATAATGG
1 AAAAAAATATTAATAATAG
114073880 AAAAAAATATTAATAATAG
1 AAAAAAATATTAATAATAG
114073899 AAA
1 AAA
114073902 CCTTTCGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.66, C:0.00, G:0.10, T:0.24
Consensus pattern (19 bp):
AAAAAAATATTAATAATAG
Found at i:114092030 original size:31 final size:31
Alignment explanation
Indices: 114091963--114092030 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
114091953 TCCTAATTGG
* *
114091963 TTTATTGATTTAGTTCATTTCTTTATTTCTC
1 TTTATTGATTTAGTTCATTTATTTATTTATC
* * *
114091994 GTTATTTATTTAGTT-ATGTTATTTATTTATT
1 TTTATTGATTTAGTTCAT-TTATTTATTTATC
114092025 TTTATT
1 TTTATT
114092031 CCTTTTAATC
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
30 2 0.07
31 28 0.93
ACGTcount: A:0.19, C:0.06, G:0.07, T:0.68
Consensus pattern (31 bp):
TTTATTGATTTAGTTCATTTATTTATTTATC
Found at i:114096572 original size:26 final size:26
Alignment explanation
Indices: 114096503--114096579 Score: 84
Period size: 26 Copynumber: 2.9 Consensus size: 26
114096493 ACATATTTTC
***
114096503 TCAAAATTTTATCATTGGTAAAATCG
1 TCAAAATTTTATCGGGGGTAAAATCG
* *
114096529 TCAAAAAATTTA-CTGGGGGTAAAATTG
1 TC-AAAATTTTATC-GGGGGTAAAATCG
114096556 TCAAAATTTTATCGGGGGTAAAAT
1 TCAAAATTTTATCGGGGGTAAAAT
114096580 AGGGATAAGA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 22 0.52
27 20 0.48
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (26 bp):
TCAAAATTTTATCGGGGGTAAAATCG
Found at i:114098837 original size:40 final size:40
Alignment explanation
Indices: 114098756--114098944 Score: 170
Period size: 40 Copynumber: 4.8 Consensus size: 40
114098746 GCTGATCGTT
* * * * * *
114098756 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAGCCT-GCA
1 CAAAGGCCTTCGGGACTTAGCCCGGATATCGCA-ACTAGCA
* *
114098796 CAAAGGCCTTCGGGACTTAACCCGGATATCGCAACTCGCA
1 CAAAGGCCTTCGGGACTTAGCCCGGATATCGCAACTAGCA
** * * *
114098836 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAATTTGCA
1 CAAAGGCCTTCGGGACTTAGCCCGGATATCGCAACTAGCA
* * * *
114098875 CAAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCA
1 CAAAGGCCTTCGGGACTTAGCCCGGATATCG-CAACTAGCA
114098915 CAAAGGTCC-TCGGGACTTAGCCCGGATATC
1 CAAAGG-CCTTCGGGACTTAGCCCGGATATC
114098945 ATTCAATTGC
Statistics
Matches: 122, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 36 0.30
40 83 0.68
41 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (40 bp):
CAAAGGCCTTCGGGACTTAGCCCGGATATCGCAACTAGCA
Found at i:114098875 original size:79 final size:80
Alignment explanation
Indices: 114098792--114098945 Score: 197
Period size: 79 Copynumber: 1.9 Consensus size: 80
114098782 TATGGTAGCC
* * **
114098792 TGCACAAAGGCCTTCGGGACTTAACCCGGATATCG-CAACTCGCACAATTG-CCTTCGGG-CTTA
1 TGCACAAAGGCCTTCGGGACTTAACCCGGATATAGTC-ACTAGCACAAAGGTCC-TCGGGACTTA
114098854 GCCCGGATATCACAATT
64 GCCCGGATATCACAATT
* * * *
114098871 TGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTAGCACAAAGGTCCTCGGGACTTAGC
1 TGCACAAAGGCCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAAGGTCCTCGGGACTTAGC
114098936 CCGGATATCA
66 CCGGATATCA
114098946 TTCAATTGCT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
79 45 0.70
80 19 0.30
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (80 bp):
TGCACAAAGGCCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAAGGTCCTCGGGACTTAGC
CCGGATATCACAATT
Found at i:114106987 original size:40 final size:40
Alignment explanation
Indices: 114106907--114107095 Score: 177
Period size: 40 Copynumber: 4.8 Consensus size: 40
114106897 GCTGATCGTT
* * * * * * *
114106907 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAGCCCGCA
1 CAAAGGCCTTCGGGACTTAGCCCGGATATCGCAACTCGCA
*
114106947 CAAAGGCCTTCGGGACTTAACCCGGATATCGCAACTCGCA
1 CAAAGGCCTTCGGGACTTAGCCCGGATATCGCAACTCGCA
** * * *
114106987 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAATTTGCA
1 CAAAGGCCTTCGGGACTTAGCCCGGATATCGCAACTCGCA
* * * * *
114107026 CAAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCA
1 CAAAGGCCTTCGGGACTTAGCCCGGATATCG-CAACTCGCA
114107066 CAAAGGTCC-TCGGGACTTAGCCCGGATATC
1 CAAAGG-CCTTCGGGACTTAGCCCGGATATC
114107096 ATTCAATTGC
Statistics
Matches: 122, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
39 34 0.28
40 85 0.70
41 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (40 bp):
CAAAGGCCTTCGGGACTTAGCCCGGATATCGCAACTCGCA
Found at i:114107027 original size:79 final size:80
Alignment explanation
Indices: 114106944--114107096 Score: 195
Period size: 79 Copynumber: 1.9 Consensus size: 80
114106934 ATGGTAGCCC
* * **
114106944 GCACAAAGGCCTTCGGGACTTAACCCGGATATCG-CAACTCGCACAATTG-CCTTCGGG-CTTAG
1 GCACAAAGGCCTTCGGGACTTAACCCGGATATAGTC-ACTAGCACAAAGGTCC-TCGGGACTTAG
114107006 CCCGGATATCACAATTT
64 CCCGGATATCACAATTT
* * * *
114107023 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTAGCACAAAGGTCCTCGGGACTTAGCC
1 GCACAAAGGCCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAAGGTCCTCGGGACTTAGCC
114107088 CGGATATCA
66 CGGATATCA
114107097 TTCAATTGCT
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
79 44 0.70
80 19 0.30
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (80 bp):
GCACAAAGGCCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAAGGTCCTCGGGACTTAGCC
CGGATATCACAATTT
Found at i:114110749 original size:31 final size:31
Alignment explanation
Indices: 114110707--114110770 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
114110697 CCTGTTCATA
114110707 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
* *
114110738 TTTCATGTTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
114110769 TT
1 TT
114110771 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:114111007 original size:24 final size:24
Alignment explanation
Indices: 114110961--114111079 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
114110951 GCTTTATCAT
*
114110961 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
114110986 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
114111010 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
114111033 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
114111057 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
114111080 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
23 24 0.28
24 48 0.56
25 13 0.15
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:114111040 original size:47 final size:48
Alignment explanation
Indices: 114110961--114111079 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
114110951 GCTTTATCAT
*
114110961 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
114111010 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
114111057 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
114111080 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 2 0.03
47 43 0.65
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:114111155 original size:20 final size:20
Alignment explanation
Indices: 114111130--114111189 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
114111120 TATGATTACC
114111130 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
114111150 TCATGTTCATATCATACATT
1 TCATGTGCATATCATACATA
114111170 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
114111190 CCATCTTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.38
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:114132947 original size:15 final size:15
Alignment explanation
Indices: 114132929--114132965 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
114132919 ATTTTACTTT
*
114132929 TTTTGTTTTTTTTTA
1 TTTTGTTTTTTTGTA
114132944 TTTTGTTTTTTTGTA
1 TTTTGTTTTTTTGTA
*
114132959 TGTTGTT
1 TTTTGTT
114132966 GTTTATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.05, C:0.00, G:0.14, T:0.81
Consensus pattern (15 bp):
TTTTGTTTTTTTGTA
Found at i:114134069 original size:91 final size:90
Alignment explanation
Indices: 114133934--114134237 Score: 312
Period size: 91 Copynumber: 3.3 Consensus size: 90
114133924 AATTTACCAT
* * * * * *
114133934 TTTCAAACATCATTTTAATCGCCTTTAAACATCATCAAAGCATACAATCAGACACTATAATTTTC
1 TTTCGAACATCATTTAAATCACATTTAAGCATCATCAAAGCATACAATCAGACACCATAATTTTC
*
114133999 AGAAATTAAAATTTACATTTAACAAC
66 AGAAATTAAAATATA-ATTTAACAAC
*
114134025 TTTCGAACATCATTTAAATCACATTTAAGCATCATCAACA-CATACATTC-GAACACCATAA-TT
1 TTTCGAACATCATTTAAATCACATTTAAGCATCATCAA-AGCATACAATCAG-ACACCATAATTT
* * *
114134087 TCTGACAATTAAAATGATAAATTAACATAT
64 TCAGA-AATTAAAAT-ATAATTTAACA-AC
* * * * *
114134117 TTTAG-ACATCATTTAAATCATC-TTTGAGTATCATTAAAGAATACAATCAGACACCATAATTTT
1 TTTCGAACATCATTTAAATCA-CATTTAAGCATCATCAAAGCATACAATCAGACACCATAATTTT
* * * *
114134180 TAGCAATTAAAACTGTAATTTAACCAC
65 CAGAAATTAAAA-TATAATTTAACAAC
*
114134207 TTTCGAACATCACTTAAATCACATTTAAGCA
1 TTTCGAACATCATTTAAATCACATTTAAGCA
114134238 ACACATTTCG
Statistics
Matches: 173, Mismatches: 28, Indels: 24
0.77 0.12 0.11
Matches are distributed among these distances:
90 14 0.08
91 144 0.83
92 15 0.09
ACGTcount: A:0.42, C:0.19, G:0.06, T:0.33
Consensus pattern (90 bp):
TTTCGAACATCATTTAAATCACATTTAAGCATCATCAAAGCATACAATCAGACACCATAATTTTC
AGAAATTAAAATATAATTTAACAAC
Found at i:114134941 original size:96 final size:96
Alignment explanation
Indices: 114134833--114135109 Score: 307
Period size: 96 Copynumber: 3.0 Consensus size: 96
114134823 TATTTAGTAA
114134833 ATCATAATCAAATATCAATTCACTAAATATATCAAATTATAATTTATCATATTCAATTTATAAAT
1 ATCATAATCAAATATCAATTCACTAAATATATCAAATTATAATTTATCATATTCAATTTATAAAT
*
114134898 CACTTTATCATTTCTTTATGATTTAGTCCAT
66 CAATTTATCATTTCTTTATGATTTAGTCCAT
* * * *
114134929 ATCATAATCAAATATC---T--C-AAA-CTAT-AATTTATCAA-AT-TCA-ATT---TAT--AAA
1 ATCATAATCAAATATCAATTCACTAAATATATCAAATTAT-AATTTATCATATTCAATTTATAAA
* * * *
114134978 TGAATTTATCGTTTCTTTATGATTTAATCTAT
65 TCAATTTATCATTTCTTTATGATTTAGTCCAT
* * * *
114135010 ATCATAAGCAAATATTAATTCACTAAATATCTCAAATTGTAATTTATCATATTCAATTTATAAAT
1 ATCATAATCAAATATCAATTCACTAAATATATCAAATTATAATTTATCATATTCAATTTATAAAT
*
114135075 CAATTTATCATTTCTTTATGGTTTAGTCCAT
66 CAATTTATCATTTCTTTATGATTTAGTCCAT
114135106 ATCA
1 ATCA
114135110 CACCTTTTTG
Statistics
Matches: 142, Mismatches: 22, Indels: 34
0.72 0.11 0.17
Matches are distributed among these distances:
81 44 0.31
83 2 0.01
84 1 0.01
86 4 0.03
87 6 0.04
88 11 0.08
89 11 0.08
90 6 0.04
91 4 0.03
93 1 0.01
94 2 0.01
96 50 0.35
ACGTcount: A:0.39, C:0.14, G:0.04, T:0.44
Consensus pattern (96 bp):
ATCATAATCAAATATCAATTCACTAAATATATCAAATTATAATTTATCATATTCAATTTATAAAT
CAATTTATCATTTCTTTATGATTTAGTCCAT
Found at i:114134955 original size:81 final size:81
Alignment explanation
Indices: 114134857--114135024 Score: 255
Period size: 81 Copynumber: 2.1 Consensus size: 81
114134847 TCAATTCACT
* * *
114134857 AAATATATCAAATTATAATTTATCATATTCAATTTATAAATCACTTTATCATTTCTTTATGATTT
1 AAATATATCAAACTATAATTTATCAAATTCAATTTATAAATCAATTTATCATTTCTTTATGATTT
* *
114134922 AGTCCATATCATAATC
66 AATCCATATCATAAGC
* * *
114134938 AAATATCTCAAACTATAATTTATCAAATTCAATTTATAAATGAATTTATCGTTTCTTTATGATTT
1 AAATATATCAAACTATAATTTATCAAATTCAATTTATAAATCAATTTATCATTTCTTTATGATTT
*
114135003 AATCTATATCATAAGC
66 AATCCATATCATAAGC
114135019 AAATAT
1 AAATAT
114135025 TAATTCACTA
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 78 1.00
ACGTcount: A:0.40, C:0.12, G:0.04, T:0.44
Consensus pattern (81 bp):
AAATATATCAAACTATAATTTATCAAATTCAATTTATAAATCAATTTATCATTTCTTTATGATTT
AATCCATATCATAAGC
Found at i:114138869 original size:21 final size:21
Alignment explanation
Indices: 114138843--114138885 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
114138833 ACATGTTGCA
114138843 TAGTTTGCAAATGAACTTACC
1 TAGTTTGCAAATGAACTTACC
114138864 TAGTTTGCAAATGAACTTACC
1 TAGTTTGCAAATGAACTTACC
114138885 T
1 T
114138886 CGGTACAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (21 bp):
TAGTTTGCAAATGAACTTACC
Found at i:114139435 original size:36 final size:36
Alignment explanation
Indices: 114139395--114139463 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
114139385 CTTCATGGAT
114139395 CTCAAAAAAATAAAGAACATTAAAAATAGGGCTAGG
1 CTCAAAAAAATAAAGAACATTAAAAATAGGGCTAGG
114139431 CTCAAAAAAATAAAGAACATTAAAAATAGGGCT
1 CTCAAAAAAATAAAGAACATTAAAAATAGGGCT
114139464 GGGGAACACT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.57, C:0.12, G:0.14, T:0.17
Consensus pattern (36 bp):
CTCAAAAAAATAAAGAACATTAAAAATAGGGCTAGG
Found at i:114141518 original size:21 final size:22
Alignment explanation
Indices: 114141477--114141518 Score: 52
Period size: 23 Copynumber: 1.9 Consensus size: 22
114141467 GGATTGCTTT
114141477 TGATTTTTCTTTAAAGTTTTACA
1 TGATTTTTCTTTAAAG-TTTACA
114141500 TGATTTCTT-TTTAAA-TTTA
1 TGATTT-TTCTTTAAAGTTTA
114141519 TTTGATTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
21 4 0.22
23 12 0.67
24 2 0.11
ACGTcount: A:0.26, C:0.07, G:0.07, T:0.60
Consensus pattern (22 bp):
TGATTTTTCTTTAAAGTTTACA
Found at i:114152950 original size:221 final size:222
Alignment explanation
Indices: 114152544--114152984 Score: 548
Period size: 221 Copynumber: 2.0 Consensus size: 222
114152534 TCACAGATAG
* * *
114152544 AATTGTGCATGTTTGTAAGATATCCAAAGGGAGCAAAAGGTGGTTTGTTTTATAACCTAAAAGAG
1 AATTGTGCATGTTTGTAAGATATCCAAAGGGAGAAAAAGGTGGTTTATTTTATAACCCAAAAGAG
*** * * * *
114152609 AAAAATTGTTATAGTGTCAACTCATGCTACTTTCCTTAAAGATATTTACATGAATAAATTCTAAC
66 AAAAACCATTATAGTGTCAACTCATGCTACTTTCCTTAAAGAAAGTTACATGAATAAATTCAAAA
*
114152674 CTCAGAGTAAAAAGGTACTTGAGGAACTTTCGGGAAATATACAAAACCCTAATGAAACAGTTCCA
131 CTCAGAGTAAAAAGGTACTTGAAGAACTTTCGGGAAATATACAAAACCCTAATGAAACAGTTCCA
* *
114152739 AAACTAACTCTTAATAGTAGACCTGTA
196 AAACCAACTCTTAATAGCAGACCTGTA
* * *
114152766 AATTGTAG-ATGTTTTTAGGATATCCAAAGGGA-AAAAAGGGTGGTTTATTTTATAACCCGAAAG
1 AATTGT-GCATGTTTGTAAGATATCCAAAGGGAGAAAAA-GGTGGTTTATTTTATAACCCAAAAG
* * * * * *
114152829 AG-CAAACCATTATAGTTTCAACTCATGCTACTTTTCTTGAAGAAAGTTACATGGATGAATTCAA
64 AGAAAAACCATTATAGTGTCAACTCATGCTACTTTCCTTAAAGAAAGTTACATGAATAAATTCAA
* * * * **
114152893 AACTCGGAGTAAAAATGTACTCT-AAGAACTTTCGGGAAATATATAAAACCTTAATGAAATGGTT
129 AACTCAGAGTAAAAAGGTACT-TGAAGAACTTTCGGGAAATATACAAAACCCTAATGAAACAGTT
* * *
114152957 CTAGAACCAACTTTTAATAGCAGACCTG
193 CCAAAACCAACTCTTAATAGCAGACCTG
114152985 CAAACGGTCA
Statistics
Matches: 185, Mismatches: 31, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
221 131 0.71
222 53 0.29
223 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (222 bp):
AATTGTGCATGTTTGTAAGATATCCAAAGGGAGAAAAAGGTGGTTTATTTTATAACCCAAAAGAG
AAAAACCATTATAGTGTCAACTCATGCTACTTTCCTTAAAGAAAGTTACATGAATAAATTCAAAA
CTCAGAGTAAAAAGGTACTTGAAGAACTTTCGGGAAATATACAAAACCCTAATGAAACAGTTCCA
AAACCAACTCTTAATAGCAGACCTGTA
Found at i:114156008 original size:26 final size:26
Alignment explanation
Indices: 114155986--114156046 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
114155976 AATTTTATCG
114155986 GGGGTAAAATCGTTAAAACTTTACTA
1 GGGGTAAAATCGTTAAAACTTTACTA
* *
114156012 GGGGTAAAATTGTTAAAATTTTACT-
1 GGGGTAAAATCGTTAAAACTTTACTA
*
114156037 GGAGTAAAAT
1 GGGGTAAAAT
114156047 TAGGATGAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 9 0.28
26 23 0.72
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (26 bp):
GGGGTAAAATCGTTAAAACTTTACTA
Found at i:114157460 original size:22 final size:22
Alignment explanation
Indices: 114157429--114157487 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 22
114157419 CTGATATTTC
114157429 AAAAT-TATCGATACTTAACCA
1 AAAATGTATCGATACTTAACCA
***
114157450 AAAATGTATCGAT-CTTGGGCA
1 AAAATGTATCGATACTTAACCA
*
114157471 AAAAGGTATCGATACTT
1 AAAATGTATCGATACTT
114157488 TTGATCTAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 22 0.69
22 10 0.31
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (22 bp):
AAAATGTATCGATACTTAACCA
Found at i:114157878 original size:20 final size:19
Alignment explanation
Indices: 114157841--114157877 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
114157831 GCCTAAATAA
114157841 AAAATTGACATACATTTTC
1 AAAATTGACATACATTTTC
*
114157860 AAAATTGACATTCATTTT
1 AAAATTGACATACATTTT
114157878 TACTTTGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.41
Consensus pattern (19 bp):
AAAATTGACATACATTTTC
Found at i:114164239 original size:45 final size:45
Alignment explanation
Indices: 114164188--114164273 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
114164178 ATGTAATCTA
*
114164188 AACTCATTGAGTTGTGGTTTGAGTTCAAGATATATGTGACATCCG
1 AACTCATTGAGTTGTGGTCTGAGTTCAAGATATATGTGACATCCG
**
114164233 AACTCATTGAGTTGTGGTCTGAGTTCGTGATATATGTGACA
1 AACTCATTGAGTTGTGGTCTGAGTTCAAGATATATGTGACA
114164274 CATGTTTTGG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.36
Consensus pattern (45 bp):
AACTCATTGAGTTGTGGTCTGAGTTCAAGATATATGTGACATCCG
Found at i:114165880 original size:13 final size:13
Alignment explanation
Indices: 114165862--114165896 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
114165852 AGCCGTTTGA
*
114165862 AGGACACGGCCCT
1 AGGACACGGCCCC
114165875 AGGACACGGCCCC
1 AGGACACGGCCCC
114165888 AGGACACGG
1 AGGACACGG
114165897 GTGTGTGACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.26, C:0.37, G:0.34, T:0.03
Consensus pattern (13 bp):
AGGACACGGCCCC
Found at i:114174771 original size:30 final size:31
Alignment explanation
Indices: 114174735--114174797 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
114174725 CCTTTTCATA
*
114174735 TTTCATATTTCATAACACTGGGCCGAA-CCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
**
114174765 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
114174796 TT
1 TT
114174798 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:114174880 original size:42 final size:42
Alignment explanation
Indices: 114174821--114174910 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
114174811 TGGCCCATAG
* * *
114174821 GCCCATTTCAGTATCACAT-ATAATGTCAATGAAAGAATGCAA
1 GCCCATCTCAATATCACATGA-AATATCAATGAAAGAATGCAA
* *
114174863 GCCCATCTCAATATCACATGAAATATCAATGAATGTATGCAA
1 GCCCATCTCAATATCACATGAAATATCAATGAAAGAATGCAA
*
114174905 ACCCAT
1 GCCCAT
114174911 TTGGGGAGAC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 40 0.98
43 1 0.02
ACGTcount: A:0.40, C:0.22, G:0.12, T:0.26
Consensus pattern (42 bp):
GCCCATCTCAATATCACATGAAATATCAATGAAAGAATGCAA
Found at i:114175084 original size:23 final size:23
Alignment explanation
Indices: 114175054--114175218 Score: 260
Period size: 23 Copynumber: 7.1 Consensus size: 23
114175044 CCTTGCCTCT
*
114175054 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
114175077 TTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
114175100 TTTTGATCACT-GGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
114175123 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
114175146 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
114175170 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
114175193 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
114175216 TTT
1 TTT
114175219 TGCGCTTCCT
Statistics
Matches: 130, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
22 8 0.06
23 92 0.71
24 30 0.23
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:114175190 original size:70 final size:70
Alignment explanation
Indices: 114175054--114175220 Score: 266
Period size: 70 Copynumber: 2.4 Consensus size: 70
114175044 CCTTGCCTCT
* * * * *
114175054 TTTAATAACTGGGGCAAAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTTGATCACTGGGCATA
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATA
114175118 AGCCC
66 AGCCC
114175123 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCAT
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACT-GGGCAT
114175187 AAGCCC
65 AAGCCC
114175193 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
114175221 CGCTTCCTCC
Statistics
Matches: 91, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
69 30 0.33
70 61 0.67
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (70 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATA
AGCCC
Found at i:114175291 original size:9 final size:9
Alignment explanation
Indices: 114175277--114175333 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
114175267 ATCTCATGTG
114175277 CATATCATA
1 CATATCATA
*
114175286 CATATCATGTG
1 CATATCA--TA
114175297 CATATCATA
1 CATATCATA
* *
114175306 CATGTCATGTG
1 CATATCA--TA
114175317 CATATCATA
1 CATATCATA
114175326 CATATCAT
1 CATATCAT
114175334 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:114175293 original size:20 final size:20
Alignment explanation
Indices: 114175265--114175335 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
114175255 GCATTTATGA
*
114175265 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
114175285 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
114175305 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
114175325 ACATATCATGT
1 ACATATCATGT
114175336 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:114175300 original size:11 final size:11
Alignment explanation
Indices: 114175270--114175324 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
114175260 TATGAACATC
114175270 TCATGTGCATA
1 TCATGTGCATA
*
114175281 TCA--TACATA
1 TCATGTGCATA
114175290 TCATGTGCATA
1 TCATGTGCATA
* *
114175301 TCA--TACATG
1 TCATGTGCATA
114175310 TCATGTGCATA
1 TCATGTGCATA
114175321 TCAT
1 TCAT
114175325 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:114175410 original size:24 final size:24
Alignment explanation
Indices: 114175372--114175418 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
114175362 ATATATAAAC
* *
114175372 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAATGGTCATTTTA
114175396 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
114175419 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (24 bp):
CCTAGGGGCAAAATGGTCATTTTA
Found at i:114176681 original size:27 final size:27
Alignment explanation
Indices: 114176585--114176672 Score: 133
Period size: 27 Copynumber: 3.3 Consensus size: 27
114176575 ATATTCGTCA
* *
114176585 TTTTACCATACAGGGG-TATTACGGTCA
1 TTTTACCCTACAGGGGCT-TTACGGTCT
*
114176612 CTTTACCCTACAGGGGCTTTACGGTCT
1 TTTTACCCTACAGGGGCTTTACGGTCT
114176639 TTTTACCCTACAGGGGCTTTACGGTCT
1 TTTTACCCTACAGGGGCTTTACGGTCT
114176666 TTTTACC
1 TTTTACC
114176673 TTTTAGGGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.36
Consensus pattern (27 bp):
TTTTACCCTACAGGGGCTTTACGGTCT
Found at i:114176874 original size:54 final size:54
Alignment explanation
Indices: 114176788--114176955 Score: 196
Period size: 54 Copynumber: 3.1 Consensus size: 54
114176778 TAGAAAGTCA
* * ** * *
114176788 AGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAAATTTACAAACCAAGGGTATTTTGGTAATTTTACAAATTG
*
114176842 AGGGTATTTCGGT-AATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAACT-
1 AGGGTATTTCGGTAAATTT-ACAAACCAAGGGTATTTTGGTAATTTTACAAATTG
* * ** *
114176895 AGGGGTATTTTGGTAAATTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCG
1 A-GGGTATTTCGGTAAATTTACAAACCAAGGGTATTTTGGTAATTTTACAAATTG
114176950 AGGGTA
1 AGGGTA
114176956 AAACAGTAAT
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
53 5 0.05
54 86 0.89
55 6 0.06
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (54 bp):
AGGGTATTTCGGTAAATTTACAAACCAAGGGTATTTTGGTAATTTTACAAATTG
Found at i:114176953 original size:27 final size:27
Alignment explanation
Indices: 114176703--114176955 Score: 170
Period size: 27 Copynumber: 9.3 Consensus size: 27
114176693 TTTCATCCTA
* * ** *
114176703 CAAGGGTGTTTTGGTAAATCAACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** ** *
114176730 CAAAGGTATTTCCGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
114176757 CAATGGTATTTCT-ATAAGTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-T
* **
114176786 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
*
114176813 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * * *
114176840 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
114176867 CAAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
114176893 CTAGGGGTATTTTGGTAAATTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* **
114176921 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
114176948 CGAGGGTA
1 CAAGGGTA
114176956 AAACAGTAAT
Statistics
Matches: 177, Mismatches: 43, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
26 2 0.01
27 146 0.82
28 14 0.08
29 15 0.08
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:114176963 original size:27 final size:27
Alignment explanation
Indices: 114176933--114177171 Score: 291
Period size: 27 Copynumber: 8.9 Consensus size: 27
114176923 AGGGTATTTT
*
114176933 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
114176960 AGTAATCCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
114176987 AGTAATTCTATAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
114177014 AGTAATTCAGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
114177041 AGTAATTCAGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
114177068 GGTAATTCTGTAAGTCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
114177095 AATAATTATGTAAATC-AGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * **
114177122 GGTAATTATGTAAATTAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
114177149 GGTAATTCTGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
114177172 CTTTGGTAAT
Statistics
Matches: 184, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 182 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:114177182 original size:81 final size:81
Alignment explanation
Indices: 114176932--114177171 Score: 324
Period size: 81 Copynumber: 3.0 Consensus size: 81
114176922 AAGGGTATTT
* ** * *
114176932 TAGTAATTTTGTAAATCGAGGGTAAAACAGTAATCCTGTAAATCAAGGGTAAAACAGTAATTCTA
1 TAGTAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTG
*
114176997 TAAATCAAGGGTAAAA
66 TAAATCGAGGGTAAAA
*
114177013 TAGTAATTCA-GTAAATCGAGGGTAAAACAGTAATTCA-GTAAATCGAGGGTAAAACGGTAATTC
1 TAGTAATT-ATGTAAATCGAGGGTAAAACAGTAATT-ATGTAAATCAAGGGTAAAACGGTAATTC
*
114177076 TGTAAGTCGAGGGTAAAA
64 TGTAAATCGAGGGTAAAA
* * *
114177094 TAATAATTATGTAAATC-AGGGGTAAAACGGTAATTATGTAAATTAAGGGTAAAACGGTAATTCT
1 TAGTAATTATGTAAATCGA-GGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACGGTAATTCT
*
114177158 GTAAATCGGGGGTA
65 GTAAATCGAGGGTA
114177172 CTTTGGTAAT
Statistics
Matches: 140, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
80 3 0.02
81 137 0.98
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.27
Consensus pattern (81 bp):
TAGTAATTATGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTG
TAAATCGAGGGTAAAA
Found at i:114177273 original size:28 final size:27
Alignment explanation
Indices: 114177167--114177276 Score: 91
Period size: 27 Copynumber: 4.0 Consensus size: 27
114177157 TGTAAATCGG
* *
114177167 GGGTACTTT-GGTAATTTTACAAGTCGAA
1 GGGTA-TTTCGGTAATTTTACAA-ACTAA
* *
114177195 -GGTATTTCGGTAAATTTACAAA-TCGA
1 GGGTATTTCGGTAATTTTACAAACT-AA
* *
114177221 GGGTATTTCAGTATTTTTTACAAACTAA
1 GGGTATTTCGGTA-ATTTTACAAACTAA
*
114177249 GGGTATTTCGGTAATTTTAGTAAACTAA
1 GGGTATTTCGGTAATTTTA-CAAACTAA
114177277 AGTATTCTAA
Statistics
Matches: 65, Mismatches: 11, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
26 4 0.06
27 32 0.49
28 28 0.43
29 1 0.02
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAACTAA
Found at i:114180095 original size:30 final size:31
Alignment explanation
Indices: 114180059--114180121 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
114180049 CCTTTTCATA
*
114180059 TTTCATATTTCATAACACTGGGCCGAA-CCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
**
114180089 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
114180120 TT
1 TT
114180122 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:114180217 original size:42 final size:42
Alignment explanation
Indices: 114180145--114180234 Score: 101
Period size: 42 Copynumber: 2.1 Consensus size: 42
114180135 TGGCCCATAG
* * **
114180145 GCCCATTTCAGTATCACATATAATGTCAATGAAAGAATGCAA
1 GCCCATCTCAATATCACATATAATACCAATGAAAGAATGCAA
* *
114180187 GCCCATCTCAATATCACATGA-AATACCAATGAATGTATGCAA
1 GCCCATCTCAATATCACAT-ATAATACCAATGAAAGAATGCAA
*
114180229 ACCCAT
1 GCCCAT
114180235 TTGGGGAGAC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
42 39 0.98
43 1 0.03
ACGTcount: A:0.40, C:0.23, G:0.12, T:0.24
Consensus pattern (42 bp):
GCCCATCTCAATATCACATATAATACCAATGAAAGAATGCAA
Found at i:114180408 original size:23 final size:23
Alignment explanation
Indices: 114180378--114180543 Score: 269
Period size: 23 Copynumber: 7.1 Consensus size: 23
114180368 CCTTGCCTCT
*
114180378 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
114180401 TTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
114180424 TTTTGATCACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
114180448 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
114180471 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
114180495 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
114180518 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
114180541 TTT
1 TTT
114180544 TGCGCTTCCT
Statistics
Matches: 132, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
23 90 0.68
24 42 0.32
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:114180436 original size:47 final size:47
Alignment explanation
Indices: 114180376--114180543 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
114180366 GGCCTTGCCT
* *
114180376 CTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
* *
114180423 CTTTTGATCACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
114180470 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
114180517 C-TTTAATAACTGGGGCATAAGCCCTTT
1 CTTTTAATAACTGGGGCATAAGCCCTTT
114180544 TGCGCTTCCT
Statistics
Matches: 115, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
46 25 0.22
47 90 0.78
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (47 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:114180544 original size:70 final size:71
Alignment explanation
Indices: 114180378--114180545 Score: 277
Period size: 70 Copynumber: 2.4 Consensus size: 71
114180368 CCTTGCCTCT
* * * * *
114180378 TTTAATAACTGGGGCAAAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTTGATCACTGGGGCAT
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAT
114180442 AAGCCC
66 AAGCCC
114180448 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCAT
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAT
114180512 AAGCCC
66 AAGCCC
114180518 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
114180546 CGCTTCCTCC
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
70 71 0.77
71 21 0.23
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (71 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAT
AAGCCC
Found at i:114180616 original size:9 final size:9
Alignment explanation
Indices: 114180602--114180658 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
114180592 ATCTCATGTG
114180602 CATATCATA
1 CATATCATA
*
114180611 CATATCATGTG
1 CATATCA--TA
114180622 CATATCATA
1 CATATCATA
* *
114180631 CATGTCATGTG
1 CATATCA--TA
114180642 CATATCATA
1 CATATCATA
114180651 CATATCAT
1 CATATCAT
114180659 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:114180618 original size:20 final size:20
Alignment explanation
Indices: 114180590--114180660 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
114180580 GCATTTATGA
*
114180590 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
114180610 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
114180630 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
114180650 ACATATCATGT
1 ACATATCATGT
114180661 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:114180625 original size:11 final size:11
Alignment explanation
Indices: 114180595--114180649 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
114180585 TATGAACATC
114180595 TCATGTGCATA
1 TCATGTGCATA
*
114180606 TCA--TACATA
1 TCATGTGCATA
114180615 TCATGTGCATA
1 TCATGTGCATA
* *
114180626 TCA--TACATG
1 TCATGTGCATA
114180635 TCATGTGCATA
1 TCATGTGCATA
114180646 TCAT
1 TCAT
114180650 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:114180725 original size:25 final size:25
Alignment explanation
Indices: 114180697--114180744 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
114180687 ATATATAAAC
* *
114180697 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
114180722 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
114180745 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:114182009 original size:27 final size:27
Alignment explanation
Indices: 114181913--114182000 Score: 133
Period size: 27 Copynumber: 3.3 Consensus size: 27
114181903 ATATTCGTCA
* *
114181913 TTTTACCATACAGGGG-TATTACGGTCA
1 TTTTACCCTACAGGGGCT-TTACGGTCT
*
114181940 CTTTACCCTACAGGGGCTTTACGGTCT
1 TTTTACCCTACAGGGGCTTTACGGTCT
114181967 TTTTACCCTACAGGGGCTTTACGGTCT
1 TTTTACCCTACAGGGGCTTTACGGTCT
114181994 TTTTACC
1 TTTTACC
114182001 TTTTAGGGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.36
Consensus pattern (27 bp):
TTTTACCCTACAGGGGCTTTACGGTCT
Found at i:114182283 original size:27 final size:27
Alignment explanation
Indices: 114182031--114182269 Score: 194
Period size: 27 Copynumber: 8.8 Consensus size: 27
114182021 TTTCATCCTA
* * **
114182031 CAAGGGTGTTTTGGTAAATCAACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* ** **
114182058 CAAAGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * *
114182085 CAATGGTATTTCT-ATAAGTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-C
* **
114182114 CAAGGGTATTTCT-GTAACTTTGTAAAC
1 CAAGGGTATTT-TGGTAATTTTACAAAC
* *
114182141 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
** * *
114182168 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
114182195 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
114182222 TAGGGGTATTTTGGTAAATTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
114182249 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
114182270 GTAAATCGAG
Statistics
Matches: 165, Mismatches: 43, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
26 1 0.01
27 136 0.82
28 13 0.08
29 15 0.09
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:114182291 original size:27 final size:27
Alignment explanation
Indices: 114182261--114182499 Score: 291
Period size: 27 Copynumber: 8.9 Consensus size: 27
114182251 AGGGTATTTT
*
114182261 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
114182288 AGTAATCCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
114182315 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
**
114182342 AGTAATTCAATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
114182369 AGTAATTCAGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
114182396 GGTAATTCTGTAAGTCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
114182423 AATAATTATGTAAATC-AGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * **
114182450 GGTAATTATGTAAATTAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
114182477 GGTAATTCTGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
114182500 CTTTGGTAAT
Statistics
Matches: 186, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 184 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.26
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:114182526 original size:27 final size:27
Alignment explanation
Indices: 114182496--114182557 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
114182486 GTAAATCGGG
* *
114182496 GGTACTTT-GGTAATTTTACAAGTCGAA
1 GGTA-TTTCGGTAAATTTACAAATCGAA
*
114182523 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTTCGGTAAATTTACAAATCGAA
114182550 GGTATTTC
1 GGTATTTC
114182558 AGTATTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 3 0.10
27 28 0.90
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (27 bp):
GGTATTTCGGTAAATTTACAAATCGAA
Found at i:114184605 original size:43 final size:44
Alignment explanation
Indices: 114184520--114184634 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 44
114184510 GTATAGGATA
* * *
114184520 TGTAAGACCATGTCTGGGACATTGGAAT-TGTATTGAGATTACG
1 TGTAAGACCATGTCTGGGACATTGGCATCTGTAATCAGATTACG
* *
114184563 TTTAAGACCTTGTCTGGGACATTGGCATCAT-TAATCAG-TTACG
1 TGTAAGACCATGTCTGGGACATTGGCATC-TGTAATCAGATTACG
* * *
114184606 TGTAAGACCCTATCTGGGACAGTGGCATC
1 TGTAAGACCATGTCTGGGACATTGGCATC
114184635 GATATGTGAT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
43 55 0.90
44 5 0.08
45 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACATTGGCATCTGTAATCAGATTACG
Found at i:114193269 original size:28 final size:28
Alignment explanation
Indices: 114193238--114193391 Score: 128
Period size: 28 Copynumber: 5.4 Consensus size: 28
114193228 GTGAACATAG
* *
114193238 GCACTGTGTGTGTGAGTTCCGTAACCGA
1 GCACTATGTGTGCGAGTTCCGTAACCGA
* * * * ****
114193266 GCACTGTGTGTACGAGATCGGTTGTTGA
1 GCACTATGTGTGCGAGTTCCGTAACCGA
114193294 CGCACTATGTGTGCGAGTTCCGTAACCGA
1 -GCACTATGTGTGCGAGTTCCGTAACCGA
* * ****
114193323 GCACTATGTGTGCGAGATCGGTTGTTGA
1 GCACTATGTGTGCGAGTTCCGTAACCGA
*
114193351 GGCATTATGTGTGCGAGTTCCGTAACCGA
1 -GCACTATGTGTGCGAGTTCCGTAACCGA
*
114193380 GCACTGTGTGTG
1 GCACTATGTGTG
114193392 TAAGATCGGT
Statistics
Matches: 93, Mismatches: 31, Indels: 4
0.73 0.24 0.03
Matches are distributed among these distances:
28 52 0.56
29 41 0.44
ACGTcount: A:0.18, C:0.19, G:0.33, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCCGTAACCGA
Found at i:114193304 original size:29 final size:28
Alignment explanation
Indices: 114193264--114193418 Score: 112
Period size: 29 Copynumber: 5.4 Consensus size: 28
114193254 TTCCGTAACC
* *
114193264 GAGCACTGTGTGTACGAGATCGGTTGTT
1 GAGCACTATGTGTGCGAGATCGGTTGTT
* * ****
114193292 GACGCACTATGTGTGCGAGTTCCGTAACC
1 GA-GCACTATGTGTGCGAGATCGGTTGTT
114193321 GAGCACTATGTGTGCGAGATCGGTTGTT
1 GAGCACTATGTGTGCGAGATCGGTTGTT
* * * ****
114193349 GAGGCATTATGTGTGCGAGTTCCGTAACC
1 GA-GCACTATGTGTGCGAGATCGGTTGTT
* **
114193378 GAGCACTGTGTGTGTAAGATCGGTTGTT
1 GAGCACTATGTGTGCGAGATCGGTTGTT
*
114193406 GAGGCACTGTGTG
1 GA-GCACTATGTG
114193419 GGAGATATCT
Statistics
Matches: 93, Mismatches: 31, Indels: 5
0.72 0.24 0.04
Matches are distributed among these distances:
28 42 0.45
29 51 0.55
ACGTcount: A:0.19, C:0.17, G:0.34, T:0.30
Consensus pattern (28 bp):
GAGCACTATGTGTGCGAGATCGGTTGTT
Found at i:114193326 original size:57 final size:57
Alignment explanation
Indices: 114193236--114193418 Score: 285
Period size: 57 Copynumber: 3.2 Consensus size: 57
114193226 AAGTGAACAT
* * *
114193236 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTACGAGATCGGTTGTTG
1 AGGCACTATGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
114193293 ACGCACTATGTGTGCGAGTTCCGTAACCGAGCACTATGTGTGCGAGATCGGTTGTTG
1 AGGCACTATGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* **
114193350 AGGCATTATGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGTAAGATCGGTTGTTG
1 AGGCACTATGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
114193407 AGGCACTGTGTG
1 AGGCACTATGTG
114193419 GGAGATATCT
Statistics
Matches: 114, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 114 1.00
ACGTcount: A:0.19, C:0.18, G:0.34, T:0.30
Consensus pattern (57 bp):
AGGCACTATGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:114195635 original size:40 final size:40
Alignment explanation
Indices: 114195591--114195677 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 40
114195581 TATGGCATAT
* * * *
114195591 AGTGTGCGATTTGAGATTA-CTTCGGCTATATGCGGCACTC
1 AGTGTGCGATTCG-GAATAGCTTCGACTATATACGGCACTC
* *
114195631 AGTGTGCGATTCGGAATAGCTTCGACTATATATGGCACTT
1 AGTGTGCGATTCGGAATAGCTTCGACTATATACGGCACTC
114195671 AGTGTGC
1 AGTGTGC
114195678 AAGACTGAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
39 4 0.10
40 36 0.90
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (40 bp):
AGTGTGCGATTCGGAATAGCTTCGACTATATACGGCACTC
Found at i:114195709 original size:41 final size:41
Alignment explanation
Indices: 114195645--114195760 Score: 153
Period size: 41 Copynumber: 2.8 Consensus size: 41
114195635 TGCGATTCGG
* *
114195645 AATAGCTTCGACTATATATGGCACTTAGTGTGCAAGACTG-
1 AATAGCTTCGGCTATGTATGGCACTTAGTGTGCAAGACTGT
* * *
114195685 AGATAGCTTCGGCTGTGTAAGGCACTTAGTGTGCAAGATTGT
1 A-ATAGCTTCGGCTATGTATGGCACTTAGTGTGCAAGACTGT
*
114195727 AATAGCTTCGGCTATGTATTGGCGCTTAGTGTGC
1 AATAGCTTCGGCTATGTA-TGGCACTTAGTGTGC
114195761 GAGATATCGA
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
40 1 0.02
41 50 0.77
42 14 0.22
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (41 bp):
AATAGCTTCGGCTATGTATGGCACTTAGTGTGCAAGACTGT
Found at i:114200126 original size:13 final size:13
Alignment explanation
Indices: 114200108--114200184 Score: 93
Period size: 13 Copynumber: 5.9 Consensus size: 13
114200098 AGTTCTTCAT
114200108 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
114200121 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
114200134 TG-TTGTGAAAAAG
1 TGCTTTTG-AAAAG
*
114200147 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* *
114200160 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
*
114200173 TGCTTTGGAAAA
1 TGCTTTTGAAAA
114200185 ATTTAAGTGT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
12 4 0.07
13 47 0.85
14 4 0.07
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:114202229 original size:137 final size:137
Alignment explanation
Indices: 114201999--114202269 Score: 524
Period size: 137 Copynumber: 2.0 Consensus size: 137
114201989 ATTCAGGCAA
* *
114201999 CAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGAT
1 CAGTGGTACTGGGCCAAAGCCCTCTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGAT
114202064 AACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCCCATT
66 AACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCCCATT
114202129 TGGGTAG
131 TGGGTAG
114202136 CAGTGGTACTGGGCCAAAGCCCTCTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGAT
1 CAGTGGTACTGGGCCAAAGCCCTCTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGAT
114202201 AACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCCCATT
66 AACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCCCATT
114202266 TGGG
131 TGGG
114202270 GAGACTACTC
Statistics
Matches: 132, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 132 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
CAGTGGTACTGGGCCAAAGCCCTCTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGAT
AACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCCCATT
TGGGTAG
Found at i:114204090 original size:26 final size:26
Alignment explanation
Indices: 114204054--114204163 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
114204044 CATGAAATTC
114204054 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
114204080 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
114204106 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
114204132 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
114204158 TTATCA
1 TTATCA
114204164 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:114206190 original size:19 final size:19
Alignment explanation
Indices: 114206153--114206189 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
114206143 TTGAACACTA
*
114206153 ATCTTTGTTTCTTCATTTT
1 ATCTTTCTTTCTTCATTTT
114206172 ATCTTTCTTTCTTC-TTTT
1 ATCTTTCTTTCTTCATTTT
114206190 TCATTTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.08, C:0.19, G:0.03, T:0.70
Consensus pattern (19 bp):
ATCTTTCTTTCTTCATTTT
Found at i:114206634 original size:8 final size:9
Alignment explanation
Indices: 114206598--114206735 Score: 52
Period size: 9 Copynumber: 14.9 Consensus size: 9
114206588 ATTAAAAAAA
*
114206598 TTATATTTT
1 TTATAATTT
*
114206607 TTAATGATTT
1 TT-ATAATTT
114206617 TTATAA-TT
1 TTATAATTT
114206625 TTA-AATTTT
1 TTATAA-TTT
114206634 TTGATAATTT
1 TT-ATAATTT
**
114206644 AAATACATTT
1 TTATA-ATTT
114206654 ATTAT--TTT
1 -TTATAATTT
* *
114206662 TAAGAATTT
1 TTATAATTT
*
114206671 TTAATATTTT
1 TT-ATAATTT
*
114206681 TTATACTTT
1 TTATAATTT
* *
114206690 TTAGAATTA
1 TTATAATTT
114206699 TTA-ATATTT
1 TTATA-ATTT
*
114206708 TTATCATTT
1 TTATAATTT
*
114206717 TTAATAATTA
1 TT-ATAATTT
114206727 TTACTAATT
1 TTA-TAATT
114206736 ATTAATTATA
Statistics
Matches: 95, Mismatches: 20, Indels: 27
0.67 0.14 0.19
Matches are distributed among these distances:
7 4 0.04
8 9 0.09
9 44 0.46
10 34 0.36
11 4 0.04
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (9 bp):
TTATAATTT
Found at i:114206644 original size:17 final size:17
Alignment explanation
Indices: 114206614--114206647 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
114206604 TTTTTAATGA
114206614 TTTTTATAATTTTAAAT
1 TTTTTATAATTTTAAAT
114206631 TTTTTGATAA-TTTAAAT
1 TTTTT-ATAATTTTAAAT
114206648 ACATTTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
TTTTTATAATTTTAAAT
Found at i:114206676 original size:28 final size:27
Alignment explanation
Indices: 114206645--114206739 Score: 77
Period size: 28 Copynumber: 3.4 Consensus size: 27
114206635 TGATAATTTA
*
114206645 AATACATTTATTATTTTTAAGAATTTTT
1 AATA-ATTTATTATTTTTAAGAATTATT
* *
114206673 AAT-ATTTTTTATACTTTTTAGAATTATT
1 AATAATTTATTAT--TTTTAAGAATTATT
* * *
114206701 AATATTTTTATCATTTTTAATAATTATT
1 AATA-ATTTATTATTTTTAAGAATTATT
*
114206729 ACTAA-TTATTA
1 AATAATTTATTA
114206740 ATTATATATG
Statistics
Matches: 52, Mismatches: 11, Indels: 10
0.71 0.15 0.14
Matches are distributed among these distances:
26 13 0.25
28 33 0.63
30 6 0.12
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (27 bp):
AATAATTTATTATTTTTAAGAATTATT
Found at i:114212469 original size:33 final size:33
Alignment explanation
Indices: 114212426--114212544 Score: 141
Period size: 33 Copynumber: 3.5 Consensus size: 33
114212416 AATAATTCAT
* *
114212426 TAGGATAGTAAACACAAAAAAGAGATAGTCCGA
1 TAGGACAGTAAACACAAAAAAGAGATAGTCCGC
*
114212459 TAGGACAGTAAACACAAAACAA-AGATAGTCTGC
1 TAGGACAGTAAACACAAAA-AAGAGATAGTCCGC
* * *
114212492 TAGGACAGTAAACACATAACATAGAGAGAGTACGC
1 TAGGACAGTAAACACA-AA-AAAGAGATAGTCCGC
*
114212527 CAGGACAGTAAACACAAA
1 TAGGACAGTAAACACAAA
114212545 TAGAGTTCAT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
33 43 0.58
34 7 0.09
35 24 0.32
ACGTcount: A:0.50, C:0.17, G:0.20, T:0.13
Consensus pattern (33 bp):
TAGGACAGTAAACACAAAAAAGAGATAGTCCGC
Found at i:114213750 original size:20 final size:20
Alignment explanation
Indices: 114213712--114213750 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
114213702 TGATATTGGT
*
114213712 AGGACTTGTGAGGATGATTG
1 AGGACTTGTGAGGAAGATTG
114213732 AGGACTT-TGAGGAGAGATT
1 AGGACTTGTGAGGA-AGATT
114213751 AAGCTAGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.28, C:0.05, G:0.38, T:0.28
Consensus pattern (20 bp):
AGGACTTGTGAGGAAGATTG
Done.