Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 364 of 433
Found at i:114214015 original size:12 final size:12
Alignment explanation
Indices: 114213998--114214022 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
114213988 GTTGTAAGAA
114213998 TTATTATTAGTT
1 TTATTATTAGTT
114214010 TTATTATTAGTT
1 TTATTATTAGTT
114214022 T
1 T
114214023 GTTTTATAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (12 bp):
TTATTATTAGTT
Found at i:114214017 original size:15 final size:16
Alignment explanation
Indices: 114213997--114214029 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
114213987 TGTTGTAAGA
114213997 ATTATTA-TTAGTTTT
1 ATTATTAGTTAGTTTT
*
114214012 ATTATTAGTTTGTTTT
1 ATTATTAGTTAGTTTT
114214028 AT
1 AT
114214030 AGTAGTTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (16 bp):
ATTATTAGTTAGTTTT
Found at i:114214665 original size:23 final size:21
Alignment explanation
Indices: 114214618--114214680 Score: 56
Period size: 21 Copynumber: 2.8 Consensus size: 21
114214608 CATTTAAATA
114214618 TTATAATATTAATAAATTTTAACT
1 TTATAATA-TAAT--ATTTTAACT
*
114214642 TCATATAA-ATATATATTTTTACT
1 T--TATAATATA-ATATTTTAACT
114214665 TTATAATATAATATTT
1 TTATAATATAATATTT
114214681 AAAATGATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
21 11 0.32
22 3 0.09
23 9 0.26
24 3 0.09
25 3 0.09
26 5 0.15
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (21 bp):
TTATAATATAATATTTTAACT
Found at i:114216769 original size:13 final size:14
Alignment explanation
Indices: 114216741--114216776 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
114216731 TTAAAAAATT
*
114216741 AAATTATTTCACTA
1 AAATAATTTCACTA
114216755 AAATAATTTCA-TA
1 AAATAATTTCACTA
114216768 AAATAATTT
1 AAATAATTT
114216777 TTTTTATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (14 bp):
AAATAATTTCACTA
Found at i:114220817 original size:40 final size:40
Alignment explanation
Indices: 114220762--114220842 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
114220752 CCTTTCCCCA
* *
114220762 AAGTAGTAAATTATTTGACTCTGCACATGTCTAACATCTT
1 AAGTACTAAATTATTTGACTCTACACATGTCTAACATCTT
114220802 AAGTACTAAATTATTTGACTCTACACATGTCTAACATCTT
1 AAGTACTAAATTATTTGACTCTACACATGTCTAACATCTT
114220842 A
1 A
114220843 GCTTTGATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.37
Consensus pattern (40 bp):
AAGTACTAAATTATTTGACTCTACACATGTCTAACATCTT
Found at i:114229845 original size:13 final size:13
Alignment explanation
Indices: 114229827--114229856 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
114229817 GAGAGGTTGG
114229827 ATCAACTTAAAGA
1 ATCAACTTAAAGA
114229840 ATCAACTTAAAGA
1 ATCAACTTAAAGA
114229853 ATCA
1 ATCA
114229857 TACTATCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.17, G:0.07, T:0.23
Consensus pattern (13 bp):
ATCAACTTAAAGA
Found at i:114247496 original size:39 final size:39
Alignment explanation
Indices: 114247453--114247551 Score: 126
Period size: 39 Copynumber: 2.5 Consensus size: 39
114247443 AACATGTTTT
** *
114247453 TGAGTATTGTGATATATGCTTGAATGTTATGCGATTATA
1 TGAGTATTGTGATATATGCTTGAACATTATGCAATTATA
* * *
114247492 TGAGTATCGTGATATGTGCTTGAACATTATGTAATTATA
1 TGAGTATTGTGATATATGCTTGAACATTATGCAATTATA
* *
114247531 TGTGTAATGTGATATATGCTT
1 TGAGTATTGTGATATATGCTT
114247552 AAAAGTAAAT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.43
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAACATTATGCAATTATA
Found at i:114255928 original size:46 final size:46
Alignment explanation
Indices: 114255836--114255956 Score: 179
Period size: 46 Copynumber: 2.6 Consensus size: 46
114255826 TGTAACCTGC
* * * *
114255836 CCATAAGCGAACCCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
114255882 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
114255928 CCATAAGTGAACTCGGACTCAACTCAACG
1 CCATAAGTGAACTCGGACTCAACTCAACG
114255957 GGAAAAACAA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:114257044 original size:48 final size:48
Alignment explanation
Indices: 114256971--114257237 Score: 172
Period size: 48 Copynumber: 5.6 Consensus size: 48
114256961 CAAGGTAGGG
* * *
114256971 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGACCACATATCAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCACATATCAA
* * *
114257019 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACAT-AT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCACATATCAA
* * * * * *
114257066 TG--AA-GCTGATAG-CCCA-ACTATGGTCTTACACGATGTCTCA-TTAT-GA
1 TGCCAATGC-CAT-GTCCCAGAC-ATGGTCTTACATG-GGAC-CACATATCAA
* * * * * *
114257112 TGCCAATGCCATGTCCCAGACATAGTCTTACATGGAATCGCATAACGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCACATATCAA
* * * * * *
114257160 TGCCAAAGCCATGTCCTAGACAGGGTCTTACATAGGACCACATGTCAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCACATATCAA
* ** * *
114257208 TGCCAAAGTAATATCCCAGATATGGTCTTA
1 TGCCAATGCCATGTCCCAGACATGGTCTTA
114257238 TATAGGAGCT
Statistics
Matches: 164, Mismatches: 43, Indels: 24
0.71 0.19 0.10
Matches are distributed among these distances:
44 4 0.02
45 20 0.12
46 7 0.04
47 8 0.05
48 121 0.74
49 4 0.02
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCACATATCAA
Found at i:114271706 original size:40 final size:40
Alignment explanation
Indices: 114271661--114271827 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
114271651 CGGAATATAA
114271661 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
114271701 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
114271741 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
114271781 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
114271820 CCGGATAT
1 CCGGATAT
114271828 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:114279722 original size:40 final size:40
Alignment explanation
Indices: 114279677--114279843 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
114279667 CGGAATATAA
114279677 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
114279717 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
114279757 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
114279797 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
114279836 CCGGATAT
1 CCGGATAT
114279844 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:114284756 original size:127 final size:124
Alignment explanation
Indices: 114284471--114284866 Score: 474
Period size: 127 Copynumber: 3.2 Consensus size: 124
114284461 TAAGGCCAAA
* * * * * * ** * * *
114284471 CAAGACCTACCGTAGAAAAAAAGCGTCCACATGAGAGTTTTTTTCATTAATTTT-TTGATAGTGC
1 CAAGAACTACTGTAGAAAAAGAGCATCCACGTGGGAGAATTTTTCAATAATTTTACTGACAGTGC
*
114284535 ATCCTGCTTGAAGCG-TTTTTACACTATTTTTTCAAAATCGTCTTCTCAAAATTATTTTT
66 ATCCTGCTTGAAGTGTTTTTTACACTATTTTTTCAAAA-CGTCTTCTCAAAATTATTTTT
* * *
114284594 CAGGAACCACTGTAGAAAAAGAGCGTCCACGTGGGAGAATTTTTCAATAATTTTACTGACAGTGC
1 CAAGAACTACTGTAGAAAAAGAGCATCCACGTGGGAGAATTTTTCAATAATTTTACTGACAGTGC
* *
114284659 ATCCTGCTTGAAGTGTTTTTTACACTATTTTTTTATAACAGTCTTTCTCAAAATTATTTTTT
66 ATCCTGCTTGAAGTGTTTTTTACACTATTTTTTCAAAAC-GTC-TTCTCAAAATTA-TTTTT
* * ** *
114284721 CAAGAACTACTGTAGAAAAAGAGCATTCATGTGGGAGCTTTTTTCAATAATTTTACTAACAGTGC
1 CAAGAACTACTGTAGAAAAAGAGCATCCACGTGGGAGAATTTTTCAATAATTTTACTGACAGTGC
* * *
114284786 ATCCTGCTTGAAGTGTTTTTGACATTATCTTTTCAAAACCGTCTTCTCAAAATTAATTTTT
66 ATCCTGCTTGAAGTGTTTTTTACACTATTTTTTCAAAA-CGTCTTCTCAAAATT-ATTTTT
*
114284847 C-TGAAACTACTGTAGAAAAA
1 CAAG-AACTACTGTAGAAAAA
114284867 AAAACAAAAC
Statistics
Matches: 236, Mismatches: 29, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
123 44 0.19
124 23 0.10
125 24 0.10
126 45 0.19
127 99 0.42
128 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (124 bp):
CAAGAACTACTGTAGAAAAAGAGCATCCACGTGGGAGAATTTTTCAATAATTTTACTGACAGTGC
ATCCTGCTTGAAGTGTTTTTTACACTATTTTTTCAAAACGTCTTCTCAAAATTATTTTT
Found at i:114291351 original size:2 final size:2
Alignment explanation
Indices: 114291344--114291378 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
114291334 TAGTTGCTTT
114291344 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
114291379 GGTGTATGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:114291886 original size:15 final size:15
Alignment explanation
Indices: 114291866--114291895 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
114291856 GTTTAGCGCC
*
114291866 TAGGGTTTTTGGGTT
1 TAGGGTTTTAGGGTT
114291881 TAGGGTTTTAGGGTT
1 TAGGGTTTTAGGGTT
114291896 GTAGTGTTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.00, G:0.40, T:0.50
Consensus pattern (15 bp):
TAGGGTTTTAGGGTT
Found at i:114291981 original size:28 final size:29
Alignment explanation
Indices: 114291940--114291997 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
114291930 TTTTATTTAG
114291940 GGTTTAAGAA-TTTTAAAAAATAAATTAA
1 GGTTTAAGAATTTTTAAAAAATAAATTAA
*
114291968 GGTTT-AGAATTTTTTTAAAAAATTAATTAA
1 GGTTTAAGAA--TTTTTAAAAAATAAATTAA
114291998 ATTAGGTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 4 0.15
28 5 0.19
30 17 0.65
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.41
Consensus pattern (29 bp):
GGTTTAAGAATTTTTAAAAAATAAATTAA
Found at i:114292084 original size:34 final size:33
Alignment explanation
Indices: 114291960--114292092 Score: 140
Period size: 34 Copynumber: 3.9 Consensus size: 33
114291950 TTTTAAAAAA
* *
114291960 TAAATTAAGGTTTAGAATTTTTTTAAAAAATTAAT
1 TAAATTAGGGTTTAG--TGTTTTTAAAAAATTAAT
* * * *
114291995 TAAATTAGGTTTTAGGGGTTTTAAATAAATAAAT
1 TAAATTAGGGTTTAGTGTTTTTAAA-AAATTAAT
* *
114292029 TAAATTAGGATTTAGAGTTTTTAAGAAAATTAAT
1 TAAATTAGGGTTTAGTGTTTTTAA-AAAATTAAT
* *
114292063 TAAATTAGGGTTTAGTTTTTTTAAATAATT
1 TAAATTAGGGTTTAGTGTTTTTAAAAAATT
114292093 TTTGTGTTTA
Statistics
Matches: 82, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
33 12 0.15
34 56 0.68
35 14 0.17
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (33 bp):
TAAATTAGGGTTTAGTGTTTTTAAAAAATTAAT
Found at i:114292412 original size:125 final size:125
Alignment explanation
Indices: 114292197--114292698 Score: 749
Period size: 125 Copynumber: 4.0 Consensus size: 125
114292187 AATAGTTTCA
* * *
114292197 GAAAAATTAATTTTGAGAAGACAGTTCTGAAAAAATAGTATCAAAAACGCTTCAAGCAGGATGCA
1 GAAAAAATAATTTTGAGAAGACGGTTCTG-AAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCA
* *
114292262 GTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTAGAGTAGTTCCT
65 CTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCT
* * * *
114292323 AAAAAAATAATTTTGAGAAGACGGTTTTGAAAAATAGTGT-AAAAGATGCTTCAAGCAGGATGTA
1 GAAAAAATAATTTTGAGAAGACGGTTCTGAAAAATAGTGTCAAAA-ACGCTTCAAGCAGGATGCA
* * *
114292387 CTGTCAACAAAATTACTAAAAAAAGCTCCCACGTGGACGCTCTTTTTTTACAGTAGTTCCT
65 CTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCT
*
114292448 GAAAAAATAATTTTGAGAAGACGGTTCTGAAAAATAATGTCAAAAACGCTTCAAGCAGGATGCAC
1 GAAAAAATAATTTTGAGAAGACGGTTCTGAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
* * * * *
114292513 TGTCAGCAAAATTTA-TTAAAAAAGCTCCCATGTGGACGTTTTTTTTCTACATTAGTTCCT
66 TGTCAGCAAAA-TTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCT
* * * *
114292573 GAAAAAATAA-TTTGAGAAGAAGGTTCTGAAAAATAGTGTAAAAAATGCTTCAAGTAGGATGCAC
1 GAAAAAATAATTTTGAGAAGACGGTTCTGAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
*
114292637 TGTCAGCAAAATTACTGAAAAAAGCTCCCACGTCGACGCTCTTTTTCTACAGTAGTTCCT
66 TGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCT
114292697 GA
1 GA
114292699 TTGGCTTTAG
Statistics
Matches: 337, Mismatches: 35, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
123 3 0.01
124 105 0.31
125 197 0.58
126 32 0.09
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (125 bp):
GAAAAAATAATTTTGAGAAGACGGTTCTGAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
TGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCT
Found at i:114292694 original size:249 final size:251
Alignment explanation
Indices: 114292197--114292698 Score: 785
Period size: 249 Copynumber: 2.0 Consensus size: 251
114292187 AATAGTTTCA
* *
114292197 GAAAAATTAATTTTGAGAAGACAGTTCTGAAAAAATAGTATCAAAAACGCTTCAAGCAGGATGCA
1 GAAAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAATATCAAAAACGCTTCAAGCAGGATGCA
* *
114292262 GTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTAGAGTAGTTCCTAAAA
66 CTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTAAAA
* * * *
114292327 AAATAATTTTGAGAAGACGGTTTTGAAAAATAGTGTAAAAGATGCTTCAAGCAGGATGTACTGTC
131 AAATAATTTTGAGAAGAAGGTTCTGAAAAATAGTGTAAAAAATGCTTCAAGCAGGATGCACTGTC
* *
114292392 AACAAAATTACTAAAAAAAGCTCCCACGTGGACGCTCTTTTTTTACAGTAGTTCCT
196 AACAAAATTACTAAAAAAAGCTCCCACGTCGACGCTCTTTTTCTACAGTAGTTCCT
* *
114292448 GAAAAAATAATTTTGAGAAGACGGTTCTG-AAAAATAATGTCAAAAACGCTTCAAGCAGGATGCA
1 GAAAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAATATCAAAAACGCTTCAAGCAGGATGCA
* * * * * *
114292512 CTGTCAGCAAAATTTA-TTAAAAAAGCTCCCATGTGGACGTTTTTTTTCTACATTAGTTCCTGAA
66 CTGTCAGCAAAA-TTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTAAA
*
114292576 AAAATAA-TTTGAGAAGAAGGTTCTGAAAAATAGTGTAAAAAATGCTTCAAGTAGGATGCACTGT
130 AAAATAATTTTGAGAAGAAGGTTCTGAAAAATAGTGTAAAAAATGCTTCAAGCAGGATGCACTGT
* *
114292640 CAGCAAAATTACTGAAAAAAGCTCCCACGTCGACGCTCTTTTTCTACAGTAGTTCCT
195 CAACAAAATTACTAAAAAAAGCTCCCACGTCGACGCTCTTTTTCTACAGTAGTTCCT
114292697 GA
1 GA
114292699 TTGGCTTTAG
Statistics
Matches: 229, Mismatches: 21, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
249 107 0.47
250 92 0.40
251 30 0.13
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (251 bp):
GAAAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAATATCAAAAACGCTTCAAGCAGGATGCA
CTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTAAAA
AAATAATTTTGAGAAGAAGGTTCTGAAAAATAGTGTAAAAAATGCTTCAAGCAGGATGCACTGTC
AACAAAATTACTAAAAAAAGCTCCCACGTCGACGCTCTTTTTCTACAGTAGTTCCT
Found at i:114295539 original size:57 final size:60
Alignment explanation
Indices: 114295418--114295547 Score: 158
Period size: 62 Copynumber: 2.1 Consensus size: 60
114295408 TCTATTACCT
* *
114295418 TATTCAAAAGAATTTTTATTTTATTAAATAAGACAAAATATAAAAATAATTTACTATTAAAA
1 TATTCAAAACAACTTTTATTTTATTAAAT-AGACAAAATATAAAAATAATTTACTA-TAAAA
* *
114295480 TATTCAAAACAACTTTTATTTTATTAAAT-GA-AATAATATAAAAATAGTTTA-TACAAATA
1 TATTCAAAACAACTTTTATTTTATTAAATAGACAA-AATATAAAAATAATTTACTATAAA-A
*
114295539 TATTAAAAA
1 TATTCAAAA
114295548 AATCAATGTA
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
58 3 0.05
59 13 0.21
60 18 0.30
62 27 0.44
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.38
Consensus pattern (60 bp):
TATTCAAAACAACTTTTATTTTATTAAATAGACAAAATATAAAAATAATTTACTATAAAA
Found at i:114295908 original size:18 final size:18
Alignment explanation
Indices: 114295885--114295921 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
114295875 GGAAAAAGAA
* *
114295885 ACATATAAGGGTTAGGAT
1 ACATATAAAGGCTAGGAT
114295903 ACATATAAAGGCTAGGAT
1 ACATATAAAGGCTAGGAT
114295921 A
1 A
114295922 AGCACCTGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.08, G:0.24, T:0.24
Consensus pattern (18 bp):
ACATATAAAGGCTAGGAT
Found at i:114296570 original size:24 final size:24
Alignment explanation
Indices: 114296543--114296592 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
114296533 TGTTATGTAT
114296543 ATATATATTTTATTTAATACTTAC
1 ATATATATTTTATTTAATACTTAC
114296567 ATATATATTTTATTTAATACTTAC
1 ATATATATTTTATTTAATACTTAC
114296591 AT
1 AT
114296593 GCGCTTCCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (24 bp):
ATATATATTTTATTTAATACTTAC
Found at i:114299102 original size:26 final size:25
Alignment explanation
Indices: 114299073--114299122 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
114299063 CTATTTATAT
*
114299073 AATTTTATTATATATTATATTTTAAA
1 AATTATATTATATATTAT-TTTTAAA
* *
114299099 AATTATATTTTCTATTATTTTTAA
1 AATTATATTATATATTATTTTTAA
114299123 TGGTGTTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (25 bp):
AATTATATTATATATTATTTTTAAA
Found at i:114305422 original size:21 final size:21
Alignment explanation
Indices: 114305396--114305439 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
114305386 TGAAGTAGTA
114305396 TTGATTAAGTAGTATTGCATT
1 TTGATTAAGTAGTATTGCATT
*
114305417 TTGATTAAGTAGTATTGTATT
1 TTGATTAAGTAGTATTGCATT
114305438 TT
1 TT
114305440 TGGATGGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.02, G:0.18, T:0.52
Consensus pattern (21 bp):
TTGATTAAGTAGTATTGCATT
Found at i:114307662 original size:61 final size:57
Alignment explanation
Indices: 114307539--114307674 Score: 148
Period size: 61 Copynumber: 2.3 Consensus size: 57
114307529 TAATTCATAT
* * * * *
114307539 AATAATTATATTAAGAATATTATTAAATTATATATTATTTTACTAAATTGTATTTGAT
1 AATAATTATATTAA-AATATGATTAAATTATATATTATTTTACTAAAATATATTTAAC
* *
114307597 AATAATTATATTAAAATATGATTAAATTATTTATTTTTATTTTTATTAAAATATATTTAAC
1 AATAATTATATTAAAATATGATTAAATTA--TA-TATTA-TTTTACTAAAATATATTTAAC
114307658 AATAAATT-TATTAAAAT
1 AAT-AATTATATTAAAAT
114307675 TTAATAACAA
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
57 14 0.21
58 14 0.21
59 2 0.03
60 4 0.06
61 28 0.42
62 4 0.06
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (57 bp):
AATAATTATATTAAAATATGATTAAATTATATATTATTTTACTAAAATATATTTAAC
Found at i:114307667 original size:26 final size:25
Alignment explanation
Indices: 114307638--114307687 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
114307628 TATTTTTATT
*
114307638 TTTATTAAAATATATTTAACAATAAA
1 TTTATTAAAATATA-ATAACAATAAA
*
114307664 TTTATTAAAATTTAATAACAATAA
1 TTTATTAAAATATAATAACAATAA
114307688 CAATAATCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (25 bp):
TTTATTAAAATATAATAACAATAAA
Found at i:114307863 original size:16 final size:16
Alignment explanation
Indices: 114307842--114307895 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
114307832 TGAATTACTA
114307842 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* *
114307858 ATTACACCTCTATTCA
1 ATTACAGCTCTATTCC
* *
114307874 ATTATAGCCCTATTCC
1 ATTACAGCTCTATTCC
114307890 ATTACA
1 ATTACA
114307896 ATGAACCAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.30, C:0.30, G:0.04, T:0.37
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:114322017 original size:6 final size:6
Alignment explanation
Indices: 114322006--114322078 Score: 87
Period size: 6 Copynumber: 12.3 Consensus size: 6
114321996 TTTGAGTCCA
* * *
114322006 TTTATT TTTA-T TTT-CT TTTATT TTTCTT ATTAGTT TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTA-TT TTTATT TTTATT
*
114322053 TTTATT TTTATT TTTATT TGTATT TT
1 TTTATT TTTATT TTTATT TTTATT TT
114322079 CCTAGACTTT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
5 8 0.14
6 44 0.77
7 5 0.09
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:114322043 original size:19 final size:18
Alignment explanation
Indices: 114322006--114322070 Score: 80
Period size: 19 Copynumber: 3.7 Consensus size: 18
114321996 TTTGAGTCCA
*
114322006 TTTATTTTTATT-TT-CT
1 TTTATTTTTATTATTATT
*
114322022 TTTATTTTTCTTATTAGTT
1 TTTATTTTTATTATTA-TT
*
114322041 TTTATTTTTATTTTTATT
1 TTTATTTTTATTATTATT
114322059 TTTATTTTTATT
1 TTTATTTTTATT
114322071 TGTATTTTCC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
16 11 0.26
17 2 0.05
18 14 0.33
19 15 0.36
ACGTcount: A:0.15, C:0.03, G:0.02, T:0.80
Consensus pattern (18 bp):
TTTATTTTTATTATTATT
Found at i:114326132 original size:43 final size:43
Alignment explanation
Indices: 114326067--114326180 Score: 149
Period size: 43 Copynumber: 2.7 Consensus size: 43
114326057 GGAATTTAGA
*
114326067 AATCCGAGCTCGTTGAGCGGTCCAAGTTCGTGATATATGTGAG
1 AATCCGAACTCGTTGAGCGGTCCAAGTTCGTGATATATGTGAG
* *
114326110 AATCCGAACTTGTTGAGTGGTCCAAGTTCGTGATATATGTG-G
1 AATCCGAACTCGTTGAGCGGTCCAAGTTCGTGATATATGTGAG
* * * * *
114326152 CATCTGAACTCATTGAGAGGTCCGAGTTC
1 AATCCGAACTCGTTGAGCGGTCCAAGTTC
114326181 ATTATGGATG
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
42 24 0.39
43 38 0.61
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (43 bp):
AATCCGAACTCGTTGAGCGGTCCAAGTTCGTGATATATGTGAG
Found at i:114330053 original size:15 final size:15
Alignment explanation
Indices: 114330033--114330092 Score: 75
Period size: 15 Copynumber: 4.0 Consensus size: 15
114330023 TATGATATTG
114330033 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
*
114330048 TATCTTGGATTTCTC
1 TATCTTGGATTTCTT
*
114330063 TATCTTGGACTTCTT
1 TATCTTGGATTTCTT
* * *
114330078 AATCCTGGTTTTCTT
1 TATCTTGGATTTCTT
114330093 GCTATCTATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.13, C:0.18, G:0.13, T:0.55
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:114333140 original size:5 final size:5
Alignment explanation
Indices: 114333130--114333161 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
114333120 ATATATGTGA
114333130 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
114333162 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:114333155 original size:9 final size:9
Alignment explanation
Indices: 114333131--114333161 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
114333121 TATATGTGAA
114333131 AAATAAAAT
1 AAATAAAAT
114333140 AAAATAAAAT
1 -AAATAAAAT
114333150 AAATAAAAT
1 AAATAAAAT
114333159 AAA
1 AAA
114333162 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:114337581 original size:5 final size:5
Alignment explanation
Indices: 114337571--114337602 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
114337561 CAATTTTTGA
114337571 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
114337603 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:114337596 original size:9 final size:9
Alignment explanation
Indices: 114337572--114337602 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
114337562 AATTTTTGAA
114337572 AAATAAAAT
1 AAATAAAAT
114337581 AAAATAAAAT
1 -AAATAAAAT
114337591 AAATAAAAT
1 AAATAAAAT
114337600 AAA
1 AAA
114337603 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:114338023 original size:43 final size:43
Alignment explanation
Indices: 114337970--114338052 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
114337960 GATTTATGTG
*
114337970 GCATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGCGA
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGA
*
114338013 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATTGATG
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATG
114338053 TATACATGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.29
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGA
Found at i:114348560 original size:19 final size:20
Alignment explanation
Indices: 114348523--114348560 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
114348513 ATAAGGTGGT
114348523 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
114348543 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
114348561 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:114356157 original size:19 final size:20
Alignment explanation
Indices: 114356120--114356157 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
114356110 ATAAGGTGGT
114356120 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
114356140 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
114356158 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:114363013 original size:34 final size:32
Alignment explanation
Indices: 114362956--114363053 Score: 164
Period size: 31 Copynumber: 3.1 Consensus size: 32
114362946 CCTTTTCATA
114362956 TTTCATATTTCATA-ATACTGGGCCGAAGCCT
1 TTTCATATTTCATATATACTGGGCCGAAGCCT
114362987 TTTCATATTTCATATTCATACTGGGCCGAAGCCT
1 TTTCATATTTCATA-T-ATACTGGGCCGAAGCCT
114363021 TTTCATATTTCATAT-TACTGGGCCGAAGCCT
1 TTTCATATTTCATATATACTGGGCCGAAGCCT
114363052 TT
1 TT
114363054 ACTGTAAACG
Statistics
Matches: 64, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
31 32 0.50
33 1 0.02
34 31 0.48
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.39
Consensus pattern (32 bp):
TTTCATATTTCATATATACTGGGCCGAAGCCT
Found at i:114363309 original size:24 final size:24
Alignment explanation
Indices: 114363245--114363314 Score: 90
Period size: 23 Copynumber: 2.9 Consensus size: 24
114363235 GCTTTATCAT
* *
114363245 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTCA
114363270 ATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTCA
114363293 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
114363315 TTCACTTCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
23 17 0.41
24 16 0.39
25 8 0.20
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTCA
Found at i:114363391 original size:20 final size:20
Alignment explanation
Indices: 114363366--114363425 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
114363356 TATGATTACC
114363366 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
114363386 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
114363406 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
114363426 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:114363396 original size:11 final size:11
Alignment explanation
Indices: 114363366--114363420 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
114363356 TATGATTACC
114363366 TCATGTGCATA
1 TCATGTGCATA
*
114363377 TCA--TACATA
1 TCATGTGCATA
114363386 TCATGTGCATA
1 TCATGTGCATA
* *
114363397 TCA--TACATT
1 TCATGTGCATA
114363406 TCATGTGCATA
1 TCATGTGCATA
114363417 TCAT
1 TCAT
114363421 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:114363500 original size:25 final size:25
Alignment explanation
Indices: 114363468--114363515 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
114363458 ATACATAAAC
* * *
114363468 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
114363493 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
114363516 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:114366066 original size:37 final size:37
Alignment explanation
Indices: 114366013--114366134 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
114366003 TATAAAAGAA
*
114366013 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
114366050 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
114366087 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
114366124 GTCTCACCCGG
1 GTCTTACCCGG
114366135 AACATATTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:114366291 original size:49 final size:49
Alignment explanation
Indices: 114366236--114366641 Score: 686
Period size: 49 Copynumber: 8.5 Consensus size: 49
114366226 TTTTACATTA
114366236 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
114366285 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
114366334 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCTCATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
114366383 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
114366432 GCCATTAGG------C-C-T-TACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
114366472 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
114366521 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * *
114366570 GCCATTAGGCCTTATCACATATACATCCACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
114366619 GCCATTCGGCCTTATCACATATA
1 GCCATTAGGCCTTATCACATATA
114366642 TATGTGTATC
Statistics
Matches: 339, Mismatches: 9, Indels: 18
0.93 0.02 0.05
Matches are distributed among these distances:
40 37 0.11
41 1 0.00
42 1 0.00
43 1 0.00
46 1 0.00
47 1 0.00
48 1 0.00
49 296 0.87
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.30
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:114366572 original size:187 final size:187
Alignment explanation
Indices: 114366257--114366632 Score: 689
Period size: 187 Copynumber: 2.0 Consensus size: 187
114366247 TTATCACATA
114366257 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
* *
114366322 TTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCTCATCGGCCA
66 TTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCA
114366387 TTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCT
131 TTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCT
114366444 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
114366509 TTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCA
66 TTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCA
* * * * *
114366574 TTAGGCCTTATCACATATACATCCACTTTCACATTCATCGCATTGGCCATTCGGCCT
131 TTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCT
114366631 TA
1 TA
114366633 TCACATATAT
Statistics
Matches: 182, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
187 182 1.00
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.30
Consensus pattern (187 bp):
TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
TTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCA
TTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCT
Found at i:114375260 original size:28 final size:27
Alignment explanation
Indices: 114375172--114375267 Score: 122
Period size: 27 Copynumber: 3.6 Consensus size: 27
114375162 CTTTAATCAA
* *
114375172 TAAAAT-ACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTTTCAGG
*
114375198 TAAAATGAATGTTTTGCCCTTTTCAGG
1 TAAAATGACTGTTTTGCCCTTTTCAGG
*
114375225 TAAAATGACTGTTTTGCCCTTTTTATGG
1 TAAAATGACTGTTTTGCCCTTTTCA-GG
* *
114375253 TAAGATGACTATTTT
1 TAAAATGACTGTTTT
114375268 ACCCCTATGT
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 6 0.10
27 40 0.66
28 15 0.25
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.43
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTTTCAGG
Found at i:114378858 original size:39 final size:39
Alignment explanation
Indices: 114378745--114378889 Score: 191
Period size: 39 Copynumber: 3.7 Consensus size: 39
114378735 TCATTCAAAC
* * * * * *
114378745 GCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATT
*
114378785 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATT
*
114378825 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
*
114378864 GCCTTCGGGCTTCGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
114378890 TCGAACATTC
Statistics
Matches: 95, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 53 0.56
40 42 0.44
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
Found at i:114382323 original size:79 final size:79
Alignment explanation
Indices: 114382227--114382372 Score: 206
Period size: 79 Copynumber: 1.8 Consensus size: 79
114382217 CTTGTTCAAA
* *
114382227 TGCCTTCGGGACATAGCCCGGTTAT-AGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATA
1 TGCCTTCGGGACATAGCCCGGATATCA-CAACTCGCACAAATGCCTTCGGG-CTTAACCCGGATA
114382291 TCACGACTCGCACAAT
64 TCACGACTCGCACAAT
* * * *
114382307 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGTTATC
1 TGCCTTCGGGACATAGCCCGGATATCACAACTCGCACAAATGCCTTCGGGCTTAACCCGGATATC
114382371 AC
66 AC
114382373 CCGAACATTC
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
78 15 0.25
79 33 0.56
80 11 0.19
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.24
Consensus pattern (79 bp):
TGCCTTCGGGACATAGCCCGGATATCACAACTCGCACAAATGCCTTCGGGCTTAACCCGGATATC
ACGACTCGCACAAT
Found at i:114382339 original size:39 final size:40
Alignment explanation
Indices: 114382227--114382372 Score: 199
Period size: 39 Copynumber: 3.7 Consensus size: 40
114382217 CTTGTTCAAA
* * * *
114382227 TGCCTTCGGGACATAGCCCGGTTAT-AGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATCA-CAACTCGCACAAT
* *
114382267 TGCCTTCGGGACTTAACCCGGATATCACGACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGATATCACAACTCGCACAAT
114382307 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGATATCACAACTCGCACAAT
*
114382346 TGCCTTCGGG-CTTAGCCCGGTTATCAC
1 TGCCTTCGGGACTTAGCCCGGATATCAC
114382373 CCGAACATTC
Statistics
Matches: 96, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 53 0.55
40 42 0.44
41 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATCACAACTCGCACAAT
Found at i:114384843 original size:27 final size:27
Alignment explanation
Indices: 114384813--114384884 Score: 108
Period size: 27 Copynumber: 2.7 Consensus size: 27
114384803 CCTTAATCGA
*
114384813 TAAAATGACTATTTTGCCTTTATGAGG
1 TAAAATGATTATTTTGCCTTTATGAGG
* * *
114384840 TAAAATGATTGTCTTGCCTTTATGTGG
1 TAAAATGATTATTTTGCCTTTATGAGG
114384867 TAAAATGATTATTTTGCC
1 TAAAATGATTATTTTGCC
114384885 CTTTTATGGT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.28, C:0.11, G:0.18, T:0.43
Consensus pattern (27 bp):
TAAAATGATTATTTTGCCTTTATGAGG
Found at i:114384894 original size:27 final size:26
Alignment explanation
Indices: 114384813--114384901 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 26
114384803 CCTTAATCGA
*
114384813 TAAAATGACTATTTTGCC-TTTATGAGG
1 TAAAATGATTATTTTGCCTTTTAT--GG
* * *
114384840 TAAAATGATTGTCTTGCCTTTATGTGG
1 TAAAATGATTATTTTGCCTTT-TATGG
114384867 TAAAATGATTATTTTGCCCTTTTATGG
1 TAAAATGATTATTTTG-CCTTTTATGG
*
114384894 TAAGATGA
1 TAAAATGA
114384902 CTGTTTTACC
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
27 42 0.82
28 7 0.14
29 2 0.04
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.43
Consensus pattern (26 bp):
TAAAATGATTATTTTGCCTTTTATGG
Found at i:114391348 original size:6 final size:6
Alignment explanation
Indices: 114391332--114391364 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
114391322 TCAACTCATC
114391332 CATTC- CATTCA CATTCA CATTCA CATTCA -ATTC
1 CATTCA CATTCA CATTCA CATTCA CATTCA CATTC
114391365 TACCATCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 9 0.33
6 18 0.67
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.36
Consensus pattern (6 bp):
CATTCA
Found at i:114392381 original size:32 final size:32
Alignment explanation
Indices: 114392340--114392408 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
114392330 ACTTATCAAG
114392340 TATAACCCAATTTGCATGTTAAGTAATATGCC
1 TATAACCCAATTTGCATGTTAAGTAATATGCC
*
114392372 TATAACCCAATTTGCATGTTAATTAATATGCC
1 TATAACCCAATTTGCATGTTAAGTAATATGCC
114392404 TATAA
1 TATAA
114392409 TGCATTTACA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.36
Consensus pattern (32 bp):
TATAACCCAATTTGCATGTTAAGTAATATGCC
Found at i:114395151 original size:40 final size:40
Alignment explanation
Indices: 114395091--114395274 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
114395081 TATTCGAATG
*
114395091 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
114395131 ATATCCGGACTAAGATCCGAAGGCATTTGTGCAAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
114395171 ATATCCGGGCTAAGACCCGAAGGCTTTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* *
114395211 ATATCTGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
114395251 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
114395275 CTTGTGCGAG
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 118 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:114395224 original size:80 final size:80
Alignment explanation
Indices: 114395091--114395274 Score: 264
Period size: 80 Copynumber: 2.3 Consensus size: 80
114395081 TATTCGAATG
* *
114395091 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCTTTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
114395155 ATTTGTGCAAGTTG-CT
65 ATTTATGCAAG-TGACC
* * *
114395171 ATATCCGGGCTAAGACCCGAAGGCTTTTGTGCTAGCGACTATATCTGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCTTTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
114395236 TTTATGCTAGTGACC
66 TTTATGCAAGTGACC
114395251 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
114395275 CTTGTGCGAG
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 91 0.97
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCAAGTGACC
Found at i:114395577 original size:22 final size:22
Alignment explanation
Indices: 114395535--114395578 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
114395525 AAAATGTGCA
* *
114395535 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
114395557 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
114395579 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:114397895 original size:26 final size:26
Alignment explanation
Indices: 114397865--114397928 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 26
114397855 TTTTGTCCTT
* *
114397865 ATTTCACAAAACATAAAAAATTCAAA
1 ATTTCACCAAACACAAAAAATTCAAA
*
114397891 ATTTCACCAAACACAAAATATTCAAA
1 ATTTCACCAAACACAAAAAATTCAAA
114397917 ATTTCACCAAAC
1 ATTTCACCAAAC
114397929 TCAAGTATAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.55, C:0.22, G:0.00, T:0.23
Consensus pattern (26 bp):
ATTTCACCAAACACAAAAAATTCAAA
Found at i:114398801 original size:45 final size:45
Alignment explanation
Indices: 114398752--114398992 Score: 294
Period size: 45 Copynumber: 5.4 Consensus size: 45
114398742 TTTCAGCCAC
** *
114398752 GGTCTTATTCA-TTTCCATCATGTTGCCATAGTGTCTTTCAACTAT
1 GGTCTTATTCATTTTTGATCATG-TGTCATAGTGTCTTTCAACTAT
* * * *
114398797 GGTCTTATTCATTTTTG-TCATGTTTCCATTGTGTCTTTCAATTGT
1 GGTCTTATTCATTTTTGATCATGTGT-CATAGTGTCTTTCAACTAT
* *
114398842 GGTCTTATTCATTTTCGA-CATGATGTCATAATGTCTTTCAACTAT
1 GGTCTTATTCATTTTTGATCATG-TGTCATAGTGTCTTTCAACTAT
* *
114398887 GGTCTTATTCATTTTTGAT-ATAGTGTCATAATATCTTTCAACTAT
1 GGTCTTATTCATTTTTGATCAT-GTGTCATAGTGTCTTTCAACTAT
*
114398932 GGTCTTACTCATTTTTGAT-ATAGTGTCATAGTGTCTTTCAACTAT
1 GGTCTTATTCATTTTTGATCAT-GTGTCATAGTGTCTTTCAACTAT
114398977 GGTCTTATTCATTTTT
1 GGTCTTATTCATTTTT
114398993 CAAGCCAATG
Statistics
Matches: 171, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
44 1 0.01
45 164 0.96
46 6 0.04
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (45 bp):
GGTCTTATTCATTTTTGATCATGTGTCATAGTGTCTTTCAACTAT
Found at i:114401449 original size:18 final size:19
Alignment explanation
Indices: 114401416--114401452 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
114401406 CCTCACAGAG
*
114401416 TTTGATTATGTTTCACAAA
1 TTTGATTATCTTTCACAAA
114401435 TTTGATT-TCTTTCACAAA
1 TTTGATTATCTTTCACAAA
114401453 AGCAAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.30, C:0.14, G:0.08, T:0.49
Consensus pattern (19 bp):
TTTGATTATCTTTCACAAA
Found at i:114413234 original size:31 final size:31
Alignment explanation
Indices: 114413196--114413255 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
114413186 TTCATATTTC
114413196 ATATTTCATAATACTGGGCCGAAGCCTTTTA
1 ATATTTCATAATACTGGGCCGAAGCCTTTTA
*
114413227 ATATTTCATATTACTGGGCCGAAGCCTTT
1 ATATTTCATAATACTGGGCCGAAGCCTTT
114413256 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.37
Consensus pattern (31 bp):
ATATTTCATAATACTGGGCCGAAGCCTTTTA
Found at i:114413511 original size:24 final size:23
Alignment explanation
Indices: 114413468--114413562 Score: 147
Period size: 23 Copynumber: 4.1 Consensus size: 23
114413458 CCTAGCCTCT
114413468 TTTAATAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
114413490 TTTCAATAACTGGGGCATAAGCCC
1 TTT-AATAACTGGGGCATAAGCCC
*
114413514 TTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
**
114413537 TTTGTTAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
114413560 TTT
1 TTT
114413563 TTCACTTCCT
Statistics
Matches: 68, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
22 3 0.04
23 56 0.82
24 9 0.13
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:114413525 original size:46 final size:47
Alignment explanation
Indices: 114413447--114413563 Score: 159
Period size: 46 Copynumber: 2.5 Consensus size: 47
114413437 GCTTTATCAT
*
114413447 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTT-A
*
114413495 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
*
114413541 TTAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
114413564 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
46 34 0.53
47 18 0.28
48 12 0.19
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:114413638 original size:20 final size:20
Alignment explanation
Indices: 114413613--114413673 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
114413603 TTATGATTAC
114413613 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
114413633 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
114413653 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
114413673 A
1 A
114413674 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:114413748 original size:25 final size:25
Alignment explanation
Indices: 114413716--114413763 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
114413706 ATACATAAAC
* * *
114413716 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
114413741 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
114413764 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:114418738 original size:31 final size:31
Alignment explanation
Indices: 114418700--114418759 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
114418690 TTCATATTTC
114418700 ATATTTCATAATACTGGGCCGAAGCCTTTTA
1 ATATTTCATAATACTGGGCCGAAGCCTTTTA
*
114418731 ATATTTCATATTACTGGGCCGAAGCCTTT
1 ATATTTCATAATACTGGGCCGAAGCCTTT
114418760 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.37
Consensus pattern (31 bp):
ATATTTCATAATACTGGGCCGAAGCCTTTTA
Found at i:114419008 original size:24 final size:24
Alignment explanation
Indices: 114418950--114419043 Score: 102
Period size: 24 Copynumber: 3.9 Consensus size: 24
114418940 GCTTTATCAT
* *
114418950 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTCA
*
114418975 ATAACTGGGCCA-AAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTCA
* *
114418998 ATAACTGGGGCATAAGCCTTTTCG
1 ATAACTGGGGCATAAGCCCTTTCA
*
114419022 TTAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
114419044 TTCACTTCCT
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
23 16 0.27
24 35 0.59
25 8 0.14
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTCA
Found at i:114419119 original size:20 final size:20
Alignment explanation
Indices: 114419094--114419154 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
114419084 TTATGATTAC
114419094 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
114419114 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
114419134 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
114419154 A
1 A
114419155 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:114419229 original size:25 final size:25
Alignment explanation
Indices: 114419197--114419244 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
114419187 ATACATAAAC
* * *
114419197 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
114419222 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
114419245 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:114423687 original size:25 final size:25
Alignment explanation
Indices: 114423658--114423705 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
114423648 TTATACCATG
* * *
114423658 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
114423683 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
114423706 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:114423785 original size:19 final size:20
Alignment explanation
Indices: 114423749--114423806 Score: 100
Period size: 19 Copynumber: 3.0 Consensus size: 20
114423739 TAAATATGGT
114423749 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
114423769 ATGTATGATAT-CACATGAT
1 ATGTATGATATGCACATGAA
114423788 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
114423807 GGTAATCATA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
19 18 0.50
20 18 0.50
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:114423926 original size:47 final size:48
Alignment explanation
Indices: 114423857--114423975 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
114423847 GAGGAAGTGA
114423857 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTAT-GCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTT-TGGCCCCAGTTATT
*
114423904 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTGGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
*
114423952 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
114423976 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 1 0.02
47 43 0.65
48 11 0.17
49 11 0.17
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
Found at i:114423951 original size:24 final size:24
Alignment explanation
Indices: 114423857--114423975 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
114423847 GAGGAAGTGA
*
114423857 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
114423881 GAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
114423904 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
114423928 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
114423952 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
114423976 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
23 22 0.26
24 51 0.61
25 11 0.13
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:114424202 original size:31 final size:31
Alignment explanation
Indices: 114424167--114424268 Score: 123
Period size: 31 Copynumber: 3.1 Consensus size: 31
114424157 CGTTTACAGT
114424167 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
114424198 AAAGGCTTCGGCCCAGTATTATGGAGTATGAAACATGA
1 AAAGGCTTCGGCCCAG---TA---A-TATGAAATATGA
*
114424236 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
114424267 AA
1 AA
114424269 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
31 29 0.48
34 2 0.03
35 2 0.03
37 1 0.02
38 27 0.44
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:114424237 original size:38 final size:38
Alignment explanation
Indices: 114424184--114424291 Score: 171
Period size: 38 Copynumber: 2.8 Consensus size: 38
114424174 TCGGCCCAGT
*
114424184 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGG
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
* *
114424222 AGTATGAAACATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
114424260 AATATGAAATATGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
114424292 GCATGATTGA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
38 50 0.79
39 13 0.21
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:114439700 original size:20 final size:20
Alignment explanation
Indices: 114439649--114439700 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
114439639 GAGGCAAAGC
* *
114439649 ACACGCCCATGTTCTTAGGG
1 ACACGCCCGTGTGCTTAGGG
* * *
114439669 ACATGCCGGTGTGCTTCGGG
1 ACACGCCCGTGTGCTTAGGG
114439689 ACACGCCCGTGT
1 ACACGCCCGTGT
114439701 CCCTCACCCG
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.15, C:0.31, G:0.31, T:0.23
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTAGGG
Found at i:114443037 original size:15 final size:15
Alignment explanation
Indices: 114443017--114443046 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
114443007 CTGCTGAGTC
114443017 GAGTGTCGATTTGTT
1 GAGTGTCGATTTGTT
114443032 GAGTGTCGATTTGTT
1 GAGTGTCGATTTGTT
114443047 TGGGGTCGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.07, G:0.33, T:0.47
Consensus pattern (15 bp):
GAGTGTCGATTTGTT
Found at i:114447012 original size:40 final size:40
Alignment explanation
Indices: 114446957--114447166 Score: 296
Period size: 40 Copynumber: 5.2 Consensus size: 40
114446947 GAACATTGAA
114446957 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
114446997 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
114447037 ATATATCCGGGCTAAGACCCGAAGGCATTCGAGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
114447077 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
114447116 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
114447157 CTATATCCGG
1 ATATATCCGG
114447167 TTAAATCCCG
Statistics
Matches: 149, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
39 2 0.01
40 147 0.99
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:114448631 original size:15 final size:15
Alignment explanation
Indices: 114448611--114448644 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
114448601 GTAATTAAAC
114448611 AAAATAAAAATAATG
1 AAAATAAAAATAATG
* *
114448626 AAAATAAAACTAATT
1 AAAATAAAAATAATG
114448641 AAAA
1 AAAA
114448645 GTTACAACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (15 bp):
AAAATAAAAATAATG
Found at i:114450116 original size:133 final size:133
Alignment explanation
Indices: 114449891--114450360 Score: 335
Period size: 133 Copynumber: 3.5 Consensus size: 133
114449881 TTCCAAAGAG
* * ** * * *
114449891 ATATTCGATTGTTTTGAACAAACGAGAGATTGCAACCCAGCGTGATAGGGCACGACTCTCGAATT
1 ATATTCGATTGTTTTGAACAAACGAGAAATTGCAACCCAACACGATAGGGCATGATTCCCGAATT
* ** * *
114449956 GCCAAACATTGAACATAGCCTTTGTTTTAAAGGGTTTTCTTAAAAGACATGAGTGAAAACCT-AA
66 GTCAAACACCGAACATAGCCTTTGTTTTAAAGGATTTTCTTAAAAGACATGAATG-AAACCTCAA
114450020 AGGA
130 AGGA
* ** *
114450024 ATATTCGATCGTTTTGAACAAACGAGAAATCACAACCCATCACGATAGGGCATGATTCCCGAATT
1 ATATTCGATTGTTTTGAACAAACGAGAAATTGCAACCCAACACGATAGGGCATGATTCCCGAATT
* * * * * * *
114450089 GTCAAACACCGAGTAC-T-G-CTTTCGTTTTAGAGGATTTTTTTAGAAGACCTTAATGGAATCTC
66 GTCAAACACCGA--ACATAGCCTTT-GTTTTAAAGGATTTTCTTAAAAGACATGAATGAAACCTC
* *
114450151 GAAGGG
128 AAAGGA
* * * *
114450157 ATATTTGATTATTTTGAGCAAACGAGAAATTGCAACCCAACAC-ATTAGGGTATGATTCCGCGAA
1 ATATTCGATTGTTTTGAACAAACGAGAAATTGCAACCCAACACGA-TAGGGCATGATTCC-CGAA
* * * * * *** * * * ** **
114450221 TTGTCAAATATCAAACTTTGCCTCCATTTTAAA-GAATTT-TTAAAAGGCATGAGTGAAAGTTTG
64 TTGTCAAACACCGAACATAGCCTTTGTTTTAAAGGATTTTCTTAAAAGACATGAATGAAACCTCA
*
114450284 AAGGG
129 AAGGA
* * * * * * *
114450289 ATATTCGATTATTTCGAGCAAACGCGATATTGCAACCCAACACGTTAGGGAACT-ATTCCGCGAA
1 ATATTCGATTGTTTTGAACAAACGAGAAATTGCAACCCAACACGATAGGGCA-TGATTCC-CGAA
*
114450353 TTGCCAAA
64 TTGTCAAA
114450361 TATCGAATCT
Statistics
Matches: 270, Mismatches: 56, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
132 93 0.34
133 150 0.56
134 23 0.09
135 4 0.01
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (133 bp):
ATATTCGATTGTTTTGAACAAACGAGAAATTGCAACCCAACACGATAGGGCATGATTCCCGAATT
GTCAAACACCGAACATAGCCTTTGTTTTAAAGGATTTTCTTAAAAGACATGAATGAAACCTCAAA
GGA
Found at i:114450321 original size:132 final size:132
Alignment explanation
Indices: 114450151--114450396 Score: 352
Period size: 132 Copynumber: 1.9 Consensus size: 132
114450141 ATGGAATCTC
* * *
114450151 GAAGGGATATTTGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACATTAGGGTA-TGATTC
1 GAAGGGATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACATTAGGGAACT-ATTC
* *
114450215 CGCGAATTGTCAAATATCAAA-CTTTGCCTCCATTTTAAAGAATTTTTAAAAGGCATGAGTGAAA
65 CGCGAATTGCCAAATATCAAATC-TCGCCTCCATTTTAAAGAATTTTTAAAAGGCATGAGTGAAA
114450279 GTTT
129 GTTT
* * *
114450283 GAAGGGATATTCGATTATTTCGAGCAAACGCGATATTGCAACCCAACACGTTAGGGAACTATTCC
1 GAAGGGATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACATTAGGGAACTATTCC
* * * *
114450348 GCGAATTGCCAAATATCGAATCTCGTCTTCGTTTTAAAGAATTTTTAAA
66 GCGAATTGCCAAATATCAAATCTCGCCTCCATTTTAAAGAATTTTTAAA
114450397 TGTATAATCA
Statistics
Matches: 100, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
132 98 0.98
133 2 0.02
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (132 bp):
GAAGGGATATTCGATTATTTCGAGCAAACGAGAAATTGCAACCCAACACATTAGGGAACTATTCC
GCGAATTGCCAAATATCAAATCTCGCCTCCATTTTAAAGAATTTTTAAAAGGCATGAGTGAAAGT
TT
Found at i:114453309 original size:44 final size:44
Alignment explanation
Indices: 114453281--114454138 Score: 1099
Period size: 44 Copynumber: 19.5 Consensus size: 44
114453271 CTGACAATAT
* * * **
114453281 AGAGACACCAAATCTGCTATCTTCGATCTGCCCTCTGACAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
* * * * **
114453325 AGAGATGACAAATCTGCTATCTTCGATCTGCTCTTTGGCAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
* * * **
114453369 ATAGACGCCAAATCTTCTATCTTCGATCTGCTCTCCGCCAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
**
114453413 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
* * **
114453457 AGAGACACCAAATCTGCTATCTTCGATCTGC-CATCTGACAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTC-TCTGCCGCTAC
* * **
114453501 AGAGACGCCAAATCTGCTATCTTCGATATGCTCTCCGCCAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
*** **
114453545 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCATCAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
*
114453589 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
* * *
114453633 AGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
* *
114453677 AGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
* * *
114453721 AGAGACGCCAAATCTGCTATCTTCGATTTGCTCTTTACCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
* * *
114453765 AAAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
*
114453809 AGAGACGCCAAATCTGCTATCTTCGACCTGCTCTCTGCCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
* * * *
114453853 AGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTACCGTTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
* * * *
114453897 AGAGATGCCAAATCTGTTATTTTCGATCTGCTCTCCGCCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
* * * * * *
114453941 AGAGATGCCAAATTTGTTATCTTTGATCTGCTCTCCGCTGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
114453985 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCT-TCGCCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCT-GCCGCTAC
* * *
114454029 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCACGAT
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
* * *
114454073 AGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
*
114454117 AGAGACGCCAAATCTGTTATCT
1 AGAGACGCCAAATCTGCTATCT
114454139 GCTTCAAGGA
Statistics
Matches: 734, Mismatches: 76, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
43 1 0.00
44 731 1.00
45 2 0.00
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.29
Consensus pattern (44 bp):
AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTAC
Found at i:114458419 original size:27 final size:27
Alignment explanation
Indices: 114458379--114458519 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
114458369 AGGAAGCGTC
114458379 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
*
114458406 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTATGCCACAAT-TATCTGAT
114458432 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTATGCCACAATTATCTGAT
* * *
114458460 CTCGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
*
114458487 CTGGTGGCTTTGCCACAA-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-AT
114458514 CTGGTG
1 CTGGTG
114458520 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
26 11 0.11
27 84 0.85
28 4 0.04
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:114458458 original size:54 final size:54
Alignment explanation
Indices: 114458376--114458519 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
114458366 TGGAGGAAGC
114458376 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
114458430 GTCCTGGTGGCTATGCCACAATTATCTGATCTCGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
114458484 GTTCTGGTGGCTTTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
114458520 ACTTCGTCAC
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 6 0.07
54 79 0.93
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:114458530 original size:27 final size:26
Alignment explanation
Indices: 114458390--114458537 Score: 113
Period size: 27 Copynumber: 5.5 Consensus size: 26
114458380 TGGTGGCTAT
* *
114458390 GCCACAATTATCTGATCTGGTGGC-TC
1 GCCACAA-TATCTGTTCTGGTGACTTC
* *
114458416 TGCCACATATATCTGTCCTGGTGGCTAT-
1 -GCCACA-ATATCTGTTCTGGTGACT-TC
* * *
114458444 GCCACAATTATCTGATCTCGTGGC-TC
1 GCCACAA-TATCTGTTCTGGTGACTTC
* *
114458470 TGCCACATATATCTGTTCTGGTGGCTTT
1 -GCCACA-ATATCTGTTCTGGTGACTTC
114458498 GCCACAATATCTGTATCTGGTGACTTC
1 GCCACAATATCTGT-TCTGGTGACTTC
*
114458525 GTCACAATATCTG
1 GCCACAATATCTG
114458538 GCAGCCTCGC
Statistics
Matches: 101, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.01
26 9 0.09
27 87 0.86
28 3 0.03
29 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (26 bp):
GCCACAATATCTGTTCTGGTGACTTC
Found at i:114458531 original size:81 final size:80
Alignment explanation
Indices: 114458382--114458537 Score: 201
Period size: 81 Copynumber: 1.9 Consensus size: 80
114458372 AAGCGTCCTG
*
114458382 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTATGCC
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGCC
114458447 ACAATTATCTGATCTC
66 ACAA-TATCTGATCTC
* * * *
114458463 GTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTTTGCCACA-ATATCTGTATCTGGTGACT-TC
1 GTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACTAT-
*
114458525 GTCACAATATCTG
63 GCCACAATATCTG
114458538 GCAGCCTCGC
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
80 17 0.26
81 49 0.74
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (80 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGCC
ACAATATCTGATCTC
Found at i:114461894 original size:70 final size:71
Alignment explanation
Indices: 114461805--114461967 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
114461795 CGATTTGTCT
114461805 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
114461870 CTTTCA
66 CTTTCA
114461876 CGTAG-TCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
114461940 CTTTCA
66 CTTTCA
114461946 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
114461968 GATACATCTC
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
70 70 0.77
71 21 0.23
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:114463543 original size:28 final size:28
Alignment explanation
Indices: 114463511--114463576 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
114463501 ATAGTAAGTC
*
114463511 CGCACACTTTGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
114463539 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
114463567 CGCACACTTA
1 CGCACACTTA
114463577 ATGCCAATCT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 30 0.88
29 3 0.09
30 1 0.03
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:114465616 original size:22 final size:22
Alignment explanation
Indices: 114465588--114465644 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
114465578 GTGTCAAAGA
114465588 CACACGGGTGTGTCCCTATGTC
1 CACACGGGTGTGTCCCTATGTC
* *
114465610 CACACGGTTGTGCCCCTATGTC
1 CACACGGGTGTGTCCCTATGTC
*
114465632 CACACGGGCGTGT
1 CACACGGGTGTGT
114465645 GACCCTGTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.14, C:0.33, G:0.28, T:0.25
Consensus pattern (22 bp):
CACACGGGTGTGTCCCTATGTC
Found at i:114468796 original size:35 final size:35
Alignment explanation
Indices: 114468743--114469095 Score: 141
Period size: 35 Copynumber: 9.5 Consensus size: 35
114468733 TATCGTCAGC
* **
114468743 TTATCCAACTATAATTGGGTGCAAATATTGATGGT
1 TTATCCAACTAGAGCTGGGTGCAAATATTGATGGT
*
114468778 TTATCCAACTAGAGTTGGGCT-CACAATTATT-ATCGTCAGT
1 TTATCCAACTAGAGCTGGG-TGCA-AA-TATTGAT-G---GT
* * * * *
114468818 ATACCCGATTAGCA-CTGGGTGCAAATATTGTTGGT
1 TTATCCAACTAG-AGCTGGGTGCAAATATTGATGGT
114468853 TTATCCAACTAGAGCTGGGCT-CATAATTATT-ATCGTCGAT
1 TTATCCAACTAGAGCTGGG-TGCA-AA-TATTGAT-G--G-T
* * *
114468893 ATATCCGACTAGCA-CTGGGTGCAAATATTGTTGGT
1 TTATCCAACTAG-AGCTGGGTGCAAATATTGATGGT
* * *
114468928 TTATCCAACTAGAGATGGGCT-CACAATTATTATCATTAGT
1 TTATCCAACTAGAGCTGGG-TGCA-AA-TA-T-TGA-TGGT
* * * * *
114468968 ATATCCGACTAGAACTGGGTGCAAATATTGTTAGT
1 TTATCCAACTAGAGCTGGGTGCAAATATTGATGGT
*
114469003 TTATCCAACTAGAGCTGGGCT-CACAATTATTACAGTCGGT
1 TTATCCAACTAGAGCTGGG-TGCA-AA-TATT-GA-T-GGT
* * * *
114469043 ATATCCGACTAGTA-CTGGGTGCAAATATCG-TTGT
1 TTATCCAACTAG-AGCTGGGTGCAAATATTGATGGT
*
114469077 TTATCCAACAAGAGCTGGG
1 TTATCCAACTAGAGCTGGG
114469096 CTCACATTCA
Statistics
Matches: 238, Mismatches: 42, Indels: 77
0.67 0.12 0.22
Matches are distributed among these distances:
33 1 0.00
34 18 0.08
35 76 0.32
36 17 0.07
37 17 0.07
38 16 0.07
39 17 0.07
40 73 0.31
41 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33
Consensus pattern (35 bp):
TTATCCAACTAGAGCTGGGTGCAAATATTGATGGT
Found at i:114468805 original size:75 final size:75
Alignment explanation
Indices: 114468688--114469101 Score: 566
Period size: 75 Copynumber: 5.5 Consensus size: 75
114468678 AGCGCCGGGC
* * * * * *
114468688 GCAATTATCGTTGTTTTATCCAACTAGAGCTAGGCTTACAATTATTATCGTCAGCT-TATCCAAC
1 GCAAATATTGTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCGTCAG-TATATCCGAC
* *
114468752 TATAATTGGGT
65 TAGAACTGGGT
* * * *
114468763 GCAAATATTGATGGTTTATCCAACTAGAGTTGGGCTCACAATTATTATCGTCAGTATACCCGATT
1 GCAAATATTGTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCGTCAGTATATCCGACT
*
114468828 AGCACTGGGT
66 AGAACTGGGT
*
114468838 GCAAATATTGTTGGTTTATCCAACTAGAGCTGGGCTCATAATTATTATCGTC-GATATATCCGAC
1 GCAAATATTGTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCGTCAG-TATATCCGAC
*
114468902 TAGCACTGGGT
65 TAGAACTGGGT
* * *
114468913 GCAAATATTGTTGGTTTATCCAACTAGAGATGGGCTCACAATTATTATCATTAGTATATCCGACT
1 GCAAATATTGTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCGTCAGTATATCCGACT
114468978 AGAACTGGGT
66 AGAACTGGGT
* *
114468988 GCAAATATTGTTAGTTTATCCAACTAGAGCTGGGCTCACAATTATTA-CAGTCGGTATATCCGAC
1 GCAAATATTGTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATC-GTCAGTATATCCGAC
*
114469052 TAGTACTGGGT
65 TAGAACTGGGT
* *
114469063 GCAAATATCGTT-GTTTATCCAACAAGAGCTGGGCTCACA
1 GCAAATATTGTTGGTTTATCCAACTAGAGCTGGGCTCACA
114469102 TTCAATACTG
Statistics
Matches: 304, Mismatches: 31, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
74 29 0.10
75 274 0.90
76 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33
Consensus pattern (75 bp):
GCAAATATTGTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCGTCAGTATATCCGACT
AGAACTGGGT
Found at i:114468911 original size:40 final size:39
Alignment explanation
Indices: 114468793--114469061 Score: 94
Period size: 40 Copynumber: 7.1 Consensus size: 39
114468783 CAACTAGAGT
* *
114468793 TGGGCTCACAATTATTATCGTC-AGTATACCCGATTAGCAC
1 TGGGCTCA-AATTATTATCGTCGA-TATATCCGACTAGCAC
* * * *
114468833 TGGG-TGCAAA-TA-T-T-GTTGGTTTATCCAACTAG-AGC
1 TGGGCT-CAAATTATTATCGTCGATATATCCGACTAGCA-C
114468868 TGGGCTCATAATTATTATCGTCGATATATCCGACTAGCAC
1 TGGGCTCA-AATTATTATCGTCGATATATCCGACTAGCAC
* * * * *
114468908 TGGG-TGCAAA-TA-T-T-GTTGGTTTATCCAACTAG-AGA
1 TGGGCT-CAAATTATTATCGTCGATATATCCGACTAGCA-C
* * *
114468943 TGGGCTCACAATTATTATCAT-TAGTATATCCGACTAGAAC
1 TGGGCTCA-AATTATTATCGTCGA-TATATCCGACTAGCAC
* * * *
114468983 TGGG-TGCAAA-TATTGT--TAG-TTTATCCAACTAG-AGC
1 TGGGCT-CAAATTATTATCGTCGATATATCCGACTAGCA-C
* *
114469018 TGGGCTCACAATTATTA-CAGTCGGTATATCCGACTAGTAC
1 TGGGCTCA-AATTATTATC-GTCGATATATCCGACTAGCAC
114469058 TGGG
1 TGGG
114469062 TGCAAATATC
Statistics
Matches: 169, Mismatches: 29, Indels: 62
0.65 0.11 0.24
Matches are distributed among these distances:
34 3 0.02
35 56 0.33
36 12 0.07
37 10 0.06
38 11 0.07
39 13 0.08
40 61 0.36
41 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (39 bp):
TGGGCTCAAATTATTATCGTCGATATATCCGACTAGCAC
Found at i:114469062 original size:225 final size:224
Alignment explanation
Indices: 114468660--114469099 Score: 623
Period size: 225 Copynumber: 2.0 Consensus size: 224
114468650 AATTGTACAT
* * * * * *
114468660 TCGTCGATATATTCGACTAGCGCCGGGCGCAATTATCGTTGTTTTATCCAACTAGAGCTAGGCTT
1 TCGTCGATATATCCGACTAGCACCGGGCGCAAATATCGTTGGTTTATCCAACTAGAGATAGGCTC
* * * *
114468725 ACAATTATTATCGTCAGCTTATCCAACTATAATTGGGTGCAAATATTGATGGTTTATCCAACTAG
66 ACAATTATTATCATCAGCTTATCCAACTAGAACTGGGTGCAAATATTGATAGTTTATCCAACTAG
* * *
114468790 AGTTGGGCTCACAATTATTATCGTCAGTATACCCGATTAGCACTGGGTGCAAATATTGTTGGTTT
131 AGCTGGGCTCACAATTATTATCGTCAGTATACCCGACTAGCACTGGGTGCAAATATCGTT-GTTT
*
114468855 ATCCAACTAGAGCTGGGCTCATAATTATTA
195 ATCCAACAAGAGCTGGGCTCATAATTATTA
* * * *
114468885 TCGTCGATATATCCGACTAGCACTGGGTGCAAATATTGTTGGTTTATCCAACTAGAGATGGGCTC
1 TCGTCGATATATCCGACTAGCACCGGGCGCAAATATCGTTGGTTTATCCAACTAGAGATAGGCTC
* * *
114468950 ACAATTATTATCATTAG-TATATCCGACTAGAACTGGGTGCAAATATTGTTAGTTTATCCAACTA
66 ACAATTATTATCATCAGCT-TATCCAACTAGAACTGGGTGCAAATATTGATAGTTTATCCAACTA
* * *
114469014 GAGCTGGGCTCACAATTATTA-CAGTCGGTATATCCGACTAGTACTGGGTGCAAATATCGTTGTT
130 GAGCTGGGCTCACAATTATTATC-GTCAGTATACCCGACTAGCACTGGGTGCAAATATCGTTGTT
114469078 TATCCAACAAGAGCTGGGCTCA
194 TATCCAACAAGAGCTGGGCTCA
114469100 CATTCAATAC
Statistics
Matches: 189, Mismatches: 24, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
224 26 0.14
225 163 0.86
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (224 bp):
TCGTCGATATATCCGACTAGCACCGGGCGCAAATATCGTTGGTTTATCCAACTAGAGATAGGCTC
ACAATTATTATCATCAGCTTATCCAACTAGAACTGGGTGCAAATATTGATAGTTTATCCAACTAG
AGCTGGGCTCACAATTATTATCGTCAGTATACCCGACTAGCACTGGGTGCAAATATCGTTGTTTA
TCCAACAAGAGCTGGGCTCATAATTATTA
Found at i:114474998 original size:27 final size:27
Alignment explanation
Indices: 114474950--114475067 Score: 175
Period size: 27 Copynumber: 4.4 Consensus size: 27
114474940 TGGATAAGTT
* *
114474950 GTAGAATTACTG-AATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
114474976 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
114475003 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
114475030 GTAGAATTACCCAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
114475057 GTAGAATTACC
1 GTAGAATTACC
114475068 ATTTTGCCCC
Statistics
Matches: 85, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
26 11 0.13
27 74 0.87
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:114475454 original size:8 final size:8
Alignment explanation
Indices: 114475441--114475472 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
114475431 ATGGGCCGAA
114475441 AACGGGCC
1 AACGGGCC
114475449 AACGGGCC
1 AACGGGCC
114475457 AACGGGCC
1 AACGGGCC
*
114475465 AACAGGCC
1 AACGGGCC
114475473 CACTTTGGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.28, C:0.38, G:0.34, T:0.00
Consensus pattern (8 bp):
AACGGGCC
Found at i:114475772 original size:27 final size:26
Alignment explanation
Indices: 114475728--114475778 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
114475718 CTCGCTGCAA
*
114475728 TCTGGTGGCCTCGCCACACATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
114475755 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
114475779 AGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.29, G:0.20, T:0.33
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:114479300 original size:29 final size:28
Alignment explanation
Indices: 114479258--114479358 Score: 98
Period size: 29 Copynumber: 3.5 Consensus size: 28
114479248 GTGACAAGAT
114479258 TGGCACTAAGTGTGC-AAGCTTGAAA-AGTA
1 TGGCACTAAGTGTGCGAA-CTT-AAATA-TA
114479287 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAA-TATA
* * * *
114479316 TGGCACTATGTGTGCGACCTCAAATTACA
1 TGGCACTAAGTGTGCGAACTTAAA-TATA
*
114479345 TGGCACTAACTGTG
1 TGGCACTAAGTGTG
114479359 TGTGATCGAT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
28 3 0.05
29 57 0.90
30 3 0.05
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAACTTAAATATA
Found at i:114486603 original size:29 final size:29
Alignment explanation
Indices: 114486501--114486603 Score: 129
Period size: 29 Copynumber: 3.6 Consensus size: 29
114486491 GTGACAAGAT
*
114486501 TGGCACTAAGTGTGCAAGCTCGAAA--AGTA
1 TGGCACTAAGTGTGCGAGCTC-AAATTA-TA
* *
114486530 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTCAAATTATA
* *
114486559 TGGCACTATGTGTGCGAGCTCAAATTACA
1 TGGCACTAAGTGTGCGAGCTCAAATTATA
114486588 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
114486604 TGATCGATTA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
28 3 0.05
29 60 0.94
30 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTCAAATTATA
Found at i:114492243 original size:27 final size:27
Alignment explanation
Indices: 114492172--114492290 Score: 130
Period size: 27 Copynumber: 4.4 Consensus size: 27
114492162 TGGATAAGTT
* *
114492172 GTAGAATTACCAAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
114492199 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
114492226 GTAGAATTACTGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * * *
114492253 GTAAAATTACTGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
114492280 GTAAAATTACC
1 GTAGAATTACC
114492291 ATTTTGCCCC
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:114492978 original size:27 final size:27
Alignment explanation
Indices: 114492920--114492981 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
114492910 CCTCGCTGTA
* *
114492920 ATCTGGTGGCCTCGCCACATATGTCTG
1 ATCTGGTGGCCTAGCCACATATCTCTG
*
114492947 TTCTGGTGGCCTAGCCACAATATCTCT-
1 ATCTGGTGGCCTAGCCAC-ATATCTCTG
114492974 ATCTGGTG
1 ATCTGGTG
114492982 ACTTCGTCAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 23 0.77
28 7 0.23
ACGTcount: A:0.16, C:0.27, G:0.24, T:0.32
Consensus pattern (27 bp):
ATCTGGTGGCCTAGCCACATATCTCTG
Found at i:114495310 original size:150 final size:150
Alignment explanation
Indices: 114495069--114495474 Score: 632
Period size: 150 Copynumber: 2.7 Consensus size: 150
114495059 CGCAATTACC
* * * *
114495069 GTTGGTTTATCCAACTAGAGCTGGGCTCAGAATTATTATCGTCGATATATCCGACTAGAACTAGG
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATAGTCGGTATATCTGACTAGAACTAGG
* *
114495134 TGCAAATATTGTTGGTTTATCCAACTAGAGTTAGGCTCACAATTATTATCATCGGTATATCCGGC
66 TGCAAATATTGTTGGTTTATCCAACTAGAGTTGGGCTCACAATTATTATCATCGGTATATCCGAC
* *
114495199 TAGCATTGGGTGCAAATATT
131 TAGCACTGGGTGAAAATATT
* * * * *
114495219 GTTGGTTTATCCAACTAGAGTTGGGCTCATAATTATTATTGTCGGTATATCTGACTAGCACTAGA
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATAGTCGGTATATCTGACTAGAACTAGG
* * * *
114495284 TGCAAAAATTGTTGGTTAATCCAACTAGAGCTGGGCTCACAATTATTATCATCGGTATATTCGAC
66 TGCAAATATTGTTGGTTTATCCAACTAGAGTTGGGCTCACAATTATTATCATCGGTATATCCGAC
114495349 TAGCACTGGGTGAAAATATT
131 TAGCACTGGGTGAAAATATT
* *
114495369 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATAGTCAGTATATCTGACTAGAACTGGG
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATAGTCGGTATATCTGACTAGAACTAGG
*
114495434 TGCAAATATCGTTGGTTTATCCAACTAGAGTTGGGCTCACA
66 TGCAAATATTGTTGGTTTATCCAACTAGAGTTGGGCTCACA
114495475 TTCAATACCA
Statistics
Matches: 230, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
150 230 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33
Consensus pattern (150 bp):
GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATAGTCGGTATATCTGACTAGAACTAGG
TGCAAATATTGTTGGTTTATCCAACTAGAGTTGGGCTCACAATTATTATCATCGGTATATCCGAC
TAGCACTGGGTGAAAATATT
Found at i:114495498 original size:225 final size:225
Alignment explanation
Indices: 114495069--114495501 Score: 629
Period size: 225 Copynumber: 1.9 Consensus size: 225
114495059 CGCAATTACC
* * *
114495069 GTTGGTTTATCCAACTAGAGCTGGGCTCAGAATTATTATCGTCGATATATCCGACTAGAACTAGG
1 GTTGGTTAATCCAACTAGAGCTGGGCTCACAATTATTATCATCGATATATCCGACTAGAACTAGG
* * * *
114495134 TGCAAATATTGTTGGTTTATCCAACTAGAGTTAGGCTCACAATTATTATCATCGGTATATCCGGC
66 TGAAAATATTGTTGGTTTATCCAACTAGAGCTAGGCTCACAATTATTATCATCAGTATATCCGAC
* * * * ***
114495199 TAGCATTGGGTGCAAATATTGTTGGTTTATCCAACTAGAGTTGGGCTCATAATTATTATTGTCGG
131 TAGAACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGTTGGGCTCATAATTAATACCATCGG
114495264 TATATCTGACTAGCACTAGATGCAAAAATT
196 TATATCTGACTAGCACTAGATGCAAAAATT
* * * *
114495294 GTTGGTTAATCCAACTAGAGCTGGGCTCACAATTATTATCATCGGTATATTCGACTAGCACTGGG
1 GTTGGTTAATCCAACTAGAGCTGGGCTCACAATTATTATCATCGATATATCCGACTAGAACTAGG
* *
114495359 TGAAAATATTGTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTAT-AGTCAGTATATCTGA
66 TGAAAATATTGTTGGTTTATCCAACTAGAGCTAGGCTCACAATTATTATCA-TCAGTATATCCGA
*
114495423 CTAGAACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGTTGGGCTCA-CATTCAATACCATC
130 CTAGAACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGTTGGGCTCATAATT-AATACCATC
114495487 GGT-TAATCTGACTAG
194 GGTAT-ATCTGACTAG
114495502 TGCTGGGCGC
Statistics
Matches: 184, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
224 5 0.03
225 179 0.97
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33
Consensus pattern (225 bp):
GTTGGTTAATCCAACTAGAGCTGGGCTCACAATTATTATCATCGATATATCCGACTAGAACTAGG
TGAAAATATTGTTGGTTTATCCAACTAGAGCTAGGCTCACAATTATTATCATCAGTATATCCGAC
TAGAACTGGGTGCAAATATCGTTGGTTTATCCAACTAGAGTTGGGCTCATAATTAATACCATCGG
TATATCTGACTAGCACTAGATGCAAAAATT
Found at i:114495508 original size:75 final size:75
Alignment explanation
Indices: 114495069--114495501 Score: 568
Period size: 75 Copynumber: 5.8 Consensus size: 75
114495059 CGCAATTACC
* * * * * *
114495069 GTTGGTTTATCCAACTAGAGCTGGGCTCAGAATTATTATCGTCGATATATCCGACTAGAACTAGG
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCATCGGTATATCTGACTAGCACTGGG
114495134 TGCAAATATT
66 TGCAAATATT
* * * * *
114495144 GTTGGTTTATCCAACTAGAGTTAGGCTCACAATTATTATCATCGGTATATCCGGCTAGCATTGGG
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCATCGGTATATCTGACTAGCACTGGG
114495209 TGCAAATATT
66 TGCAAATATT
* * ** * *
114495219 GTTGGTTTATCCAACTAGAGTTGGGCTCATAATTATTATTGTCGGTATATCTGACTAGCACTAGA
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCATCGGTATATCTGACTAGCACTGGG
*
114495284 TGCAAAAATT
66 TGCAAATATT
*
114495294 GTTGGTTAATCCAACTAGAGCTGGGCTCACAATTATTATCATCGGTATAT-TCGACTAGCACTGG
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCATCGGTATATCT-GACTAGCACTGG
*
114495358 GTGAAAATATT
65 GTGCAAATATT
* *
114495369 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTAT-AGTCAGTATATCTGACTAGAACTGG
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCA-TCGGTATATCTGACTAGCACTGG
*
114495433 GTGCAAATATC
65 GTGCAAATATT
* * *
114495444 GTTGGTTTATCCAACTAGAGTTGGGCTCAC-ATTCAATACCATCGGT-TAATCTGACTAG
1 GTTGGTTTATCCAACTAGAGCTGGGCTCACAATT-ATTATCATCGGTAT-ATCTGACTAG
114495502 TGCTGGGCGC
Statistics
Matches: 315, Mismatches: 37, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
74 6 0.02
75 307 0.97
76 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33
Consensus pattern (75 bp):
GTTGGTTTATCCAACTAGAGCTGGGCTCACAATTATTATCATCGGTATATCTGACTAGCACTGGG
TGCAAATATT
Found at i:114500974 original size:48 final size:48
Alignment explanation
Indices: 114500751--114500966 Score: 187
Period size: 48 Copynumber: 4.6 Consensus size: 48
114500741 ATGTACGATC
* * *
114500751 CCATGAAAGACCATGTCTGGGACATGGCTTTGGCATCGATATGTAATT
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATT
* * *
114500799 TCATGTAAGACCATAG-CTGGG-C-T---ATCGACATCGATATGTGA-T
1 CCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATATGTGATT
* * ** ** *
114500841 CCTATGTAAGACCATGCCTGGGACATGACATTGGCATCGACCT-ACAAT
1 CC-ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATT
* * *
114500889 CTTATGTAAGATCATGTTTGGGACATGGCATTGGCATCGATATGTGATT
1 C-CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATT
* *
114500938 CCATGTAAGACCATATCTGGGATATGGCA
1 CCATGTAAGACCATGTCTGGGACATGGCA
114500967 ATAGCATCCT
Statistics
Matches: 129, Mismatches: 28, Indels: 22
0.72 0.16 0.12
Matches are distributed among these distances:
42 3 0.02
43 31 0.24
44 1 0.01
45 1 0.01
46 1 0.01
47 2 0.02
48 86 0.67
49 4 0.03
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (48 bp):
CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATT
Found at i:114505167 original size:50 final size:49
Alignment explanation
Indices: 114505041--114505228 Score: 189
Period size: 50 Copynumber: 3.8 Consensus size: 49
114505031 TGAGTACACG
* * * * * * *
114505041 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTTA-ATGACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATG--GTAGGTCACA
*
114505092 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGT-AGGTCACA
* * * * *
114505142 TGTGTAGCACTAAGTGCAGGCTACTACGTGTACCGGATTGTTGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTAGGTCACA
* * *
114505191 TGTGTAGTACTAAGTGCAAGCTACTATGCGTATCAGAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT
114505229 AGCTTCGGCT
Statistics
Matches: 116, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
49 39 0.34
50 44 0.38
51 33 0.28
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTAGGTCACA
Found at i:114512498 original size:50 final size:50
Alignment explanation
Indices: 114512423--114512647 Score: 237
Period size: 50 Copynumber: 4.5 Consensus size: 50
114512413 TGAGTACACG
*
114512423 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACGCATA-TGTTAAGTCACA
* * * * *
114512473 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCA-ATGACTT-CGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACGCATATG--TTAAG-TCACA
* * * * *
114512524 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACGCATAT-GTTAAGTCACA
* * *
114512574 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACGGAT-TGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACGCATATGTTAAGTCACA
114512622 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
114512648 TGCGTATCAG
Statistics
Matches: 152, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
48 31 0.20
49 4 0.03
50 75 0.49
51 41 0.27
52 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACGCATATGTTAAGTCACA
Found at i:114512594 original size:101 final size:97
Alignment explanation
Indices: 114512419--114512659 Score: 293
Period size: 101 Copynumber: 2.4 Consensus size: 97
114512409 ATTGTGAGTA
* * * *
114512419 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGTGAAGTCACATGTGTAGTACT
* *
114512484 AAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
65 AAGTGCAGGCTACTACGCGTACGCAATG--TT-GAT
* *
114512520 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GTGAAGTCACATGTGTAGTACT
* * * *
114512585 AAGTGCAGGCTACTACGTGTACGGATTGTTGGT
65 AAGTGCAGGCTACTACGCGTACGCAATGTTGAT
* * * *
114512618 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT
114512660 AGCTTCGGCT
Statistics
Matches: 123, Mismatches: 16, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
98 40 0.33
99 2 0.02
100 1 0.01
101 80 0.65
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.29
Consensus pattern (97 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGTGAAGTCACATGTGTAGTACTA
AGTGCAGGCTACTACGCGTACGCAATGTTGAT
Found at i:114520849 original size:46 final size:46
Alignment explanation
Indices: 114520757--114520877 Score: 179
Period size: 46 Copynumber: 2.6 Consensus size: 46
114520747 TGTAACCTGC
* * * *
114520757 CCATAAGCGAACCCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
114520803 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
114520849 CCATAAGTGAACTCGGACTCAACTCAACG
1 CCATAAGTGAACTCGGACTCAACTCAACG
114520878 GGAAAAACAA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:114521964 original size:48 final size:48
Alignment explanation
Indices: 114521891--114522157 Score: 172
Period size: 48 Copynumber: 5.6 Consensus size: 48
114521881 CAAGGTAGGG
* * *
114521891 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGACCACATATCAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCACATATCAA
* * *
114521939 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACAT-AT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCACATATCAA
* * * * * *
114521986 TG--AA-GCTGATAG-CCCA-ACTATGGTCTTACACGATGTCTCA-TTAT-GA
1 TGCCAATGC-CAT-GTCCCAGAC-ATGGTCTTACATG-GGAC-CACATATCAA
* * * * * *
114522032 TGCCAATGCCATGTCCCAGACATAGTCTTACATGGAATCGCATAACGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCACATATCAA
* * * * * *
114522080 TGCCAAAGCCATGTCCTAGACAGGGTCTTACATAGGACCACATGTCAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCACATATCAA
* ** * *
114522128 TGCCAAAGTAATATCCCAGATATGGTCTTA
1 TGCCAATGCCATGTCCCAGACATGGTCTTA
114522158 TATAGGAGCT
Statistics
Matches: 164, Mismatches: 43, Indels: 24
0.71 0.19 0.10
Matches are distributed among these distances:
44 4 0.02
45 20 0.12
46 7 0.04
47 8 0.05
48 121 0.74
49 4 0.02
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCACATATCAA
Found at i:114540954 original size:77 final size:77
Alignment explanation
Indices: 114540827--114540975 Score: 271
Period size: 77 Copynumber: 1.9 Consensus size: 77
114540817 TTAATTTCCC
*
114540827 TTTCTTGCCAAATCTTAAAACTTTCTTCCACGGGGACACTTTTAGAAATACCTTATCACCGACCT
1 TTTCTTGCCAAATCTGAAAACTTTCTTCCACGGGGACACTTTTAGAAATACCTTATCACCGACCT
114540892 GAAACTCTTCAT
66 GAAACTCTTCAT
* *
114540904 TTTCTTGCCAAATCTGAAGACTTTCTTCCATGGGGACACTTTTAGAAATACCTTATCACCGACCT
1 TTTCTTGCCAAATCTGAAAACTTTCTTCCACGGGGACACTTTTAGAAATACCTTATCACCGACCT
114540969 GAAACTC
66 GAAACTC
114540976 AATCTCTTTC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 69 1.00
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.33
Consensus pattern (77 bp):
TTTCTTGCCAAATCTGAAAACTTTCTTCCACGGGGACACTTTTAGAAATACCTTATCACCGACCT
GAAACTCTTCAT
Found at i:114546408 original size:48 final size:48
Alignment explanation
Indices: 114546337--114546565 Score: 175
Period size: 48 Copynumber: 4.8 Consensus size: 48
114546327 GGTAGGGTGT
* * *
114546337 CAATGCCATATCCCAGATATGGTCTTACATGGGACCACATAATGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATGATGC
*
114546385 CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA-CAT-AT-C
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATGATGC
* * * * * *
114546430 GAA-GCCGATAG-CCCAG-CTACGGTCTTACACGATG-TCTCATTATGATGC
1 CAATGCC-AT-GTCCCAGAC-ATGGTCTTACATG-GGATCACATAATGATGC
* * * * * * ** *
114546478 CAATGCCATGTCCAAAATATGGTATTATATAGGATCATTTAACGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATGATGC
* * *
114546526 CAAAGCCATGTCCCAAACATGGTCTTACATGGAATCACAT
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAT
114546566 GTCACTACCG
Statistics
Matches: 136, Mismatches: 34, Indels: 22
0.71 0.18 0.11
Matches are distributed among these distances:
44 4 0.03
45 25 0.18
46 6 0.04
47 6 0.04
48 92 0.68
49 3 0.02
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (48 bp):
CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATGATGC
Found at i:114556760 original size:2 final size:2
Alignment explanation
Indices: 114556753--114556790 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
114556743 AACTCAAATT
114556753 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
114556791 ACTAAAACAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:114560145 original size:38 final size:38
Alignment explanation
Indices: 114560086--114560193 Score: 198
Period size: 38 Copynumber: 2.8 Consensus size: 38
114560076 TCAATCATGC
*
114560086 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
114560125 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
114560163 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
114560194 ACTGGGCCGA
Statistics
Matches: 68, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
38 57 0.84
39 11 0.16
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.40
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:114560147 original size:31 final size:31
Alignment explanation
Indices: 114560109--114560210 Score: 132
Period size: 31 Copynumber: 3.1 Consensus size: 31
114560099 CCTTTTCATA
114560109 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
114560146 ATTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
114560178 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
114560209 TT
1 TT
114560211 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
31 32 0.51
32 1 0.02
33 1 0.02
37 1 0.02
38 28 0.44
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:114560465 original size:24 final size:23
Alignment explanation
Indices: 114560422--114560539 Score: 186
Period size: 23 Copynumber: 5.1 Consensus size: 23
114560412 CCTAGCCTCT
114560422 TTTAATAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
114560444 TTTCAATAACTGGGGCATAAGCCC
1 TTT-AATAACTGGGGCATAAGCCC
114560468 TTT-ATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
114560490 TTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
114560513 TTTCGATAACTGGGGCATAAGCCC
1 TTT-AATAACTGGGGCATAAGCCC
114560537 TTT
1 TTT
114560540 TTCACTTCCT
Statistics
Matches: 91, Mismatches: 1, Indels: 6
0.93 0.01 0.06
Matches are distributed among these distances:
22 25 0.27
23 35 0.38
24 31 0.34
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:114560478 original size:45 final size:46
Alignment explanation
Indices: 114560426--114560539 Score: 187
Period size: 45 Copynumber: 2.5 Consensus size: 46
114560416 GCCTCTTTTA
114560426 ATAACTGGGGCA-AAGCCCTTTCAATAACTGGGGCATAAGCCCTTT-
1 ATAACTGGGGCATAAGCCCTTT-AATAACTGGGGCATAAGCCCTTTC
*
114560471 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTC
1 ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTC
114560517 GATAACTGGGGCATAAGCCCTTT
1 -ATAACTGGGGCATAAGCCCTTT
114560540 TTCACTTCCT
Statistics
Matches: 65, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
45 34 0.52
46 9 0.14
47 22 0.34
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (46 bp):
ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTC
Found at i:114560512 original size:69 final size:70
Alignment explanation
Indices: 114560400--114560539 Score: 223
Period size: 69 Copynumber: 2.0 Consensus size: 70
114560390 TGCTTTATCA
*
114560400 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCAATAACTGGGGCATAAG
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCAATAACTGGGGCATAAG
114560465 CCCTT
66 CCCTT
*
114560470 TATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTCGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTCAATAACTGGGGCATA
114560532 AGCCCTT
64 AGCCCTT
114560539 T
1 T
114560540 TTCACTTCCT
Statistics
Matches: 66, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
68 12 0.18
69 41 0.62
70 13 0.20
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (70 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTT
Found at i:114560616 original size:20 final size:20
Alignment explanation
Indices: 114560591--114560650 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
114560581 TATGATTACC
114560591 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
114560611 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
114560631 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
114560651 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:114560621 original size:11 final size:11
Alignment explanation
Indices: 114560591--114560645 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
114560581 TATGATTACC
114560591 TCATGTGCATA
1 TCATGTGCATA
*
114560602 TCA--TACATA
1 TCATGTGCATA
114560611 TCATGTGCATA
1 TCATGTGCATA
* *
114560622 TCA--TACATT
1 TCATGTGCATA
114560631 TCATGTGCATA
1 TCATGTGCATA
114560642 TCAT
1 TCAT
114560646 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:114560725 original size:25 final size:25
Alignment explanation
Indices: 114560693--114560740 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
114560683 ATGCATAAAC
* * *
114560693 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
114560718 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
114560741 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:114566125 original size:70 final size:71
Alignment explanation
Indices: 114566042--114566204 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
114566032 CGATTTGTCT
114566042 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
114566106 CTTTCA
66 CTTTCA
114566112 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
114566177 CTTTCA
66 CTTTCA
114566183 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
114566205 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Done.