Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 365 of 433
Found at i:114566242 original size:71 final size:70
Alignment explanation
Indices: 114566042--114566238 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
114566032 CGATTTGTCT
* * * *
114566042 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
114566106 CTTTCA
65 CTTTCA
* * * *
114566112 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
114566177 CTTTCA
65 CTTTCA
* *
114566183 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
114566239 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 53 0.45
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:114573653 original size:71 final size:71
Alignment explanation
Indices: 114573569--114573732 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
114573559 CGATTTGTCT
114573569 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
114573634 CTTTCA
66 CTTTCA
* *
114573640 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
114573705 CTTTCA
66 CTTTCA
114573711 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
114573733 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:114573770 original size:71 final size:70
Alignment explanation
Indices: 114573569--114573766 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
114573559 CGATTTGTCT
* * * * *
114573569 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
114573634 CTTTCA
65 CTTTCA
* * * *
114573640 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
114573705 CTTTCA
65 CTTTCA
* *
114573711 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
114573767 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:114580406 original size:70 final size:71
Alignment explanation
Indices: 114580319--114580463 Score: 274
Period size: 70 Copynumber: 2.1 Consensus size: 71
114580309 AGTAATAGTC
*
114580319 ACTAAGGGGAAAGAATAGGGATCAATACAATGTCCCAAACTA-TTTTGTGTTTGTAACCCTTTTG
1 ACTAAGGGGAAAGAATAGAGATCAATACAATGTCCCAAACTATTTTTGTGTTTGTAACCCTTTTG
114580383 ATACTT
66 ATACTT
114580389 ACTAAGGGGAAAGAATAGAGATCAATACAATGTCCCAAACTATTTTTGTGTTTGTAACCCTTTTG
1 ACTAAGGGGAAAGAATAGAGATCAATACAATGTCCCAAACTATTTTTGTGTTTGTAACCCTTTTG
114580454 ATACTT
66 ATACTT
114580460 ACTA
1 ACTA
114580464 TTTTTGAATT
Statistics
Matches: 73, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
70 41 0.56
71 32 0.44
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (71 bp):
ACTAAGGGGAAAGAATAGAGATCAATACAATGTCCCAAACTATTTTTGTGTTTGTAACCCTTTTG
ATACTT
Found at i:114582065 original size:21 final size:21
Alignment explanation
Indices: 114582039--114582082 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
114582029 CAATTTATTC
114582039 TTCCTTTTTAATCTCTTGAAT
1 TTCCTTTTTAATCTCTTGAAT
114582060 TTCCTTTTTAATCTCTTGAAT
1 TTCCTTTTTAATCTCTTGAAT
114582081 TT
1 TT
114582083 TATCTTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.05, T:0.59
Consensus pattern (21 bp):
TTCCTTTTTAATCTCTTGAAT
Found at i:114588998 original size:25 final size:26
Alignment explanation
Indices: 114588970--114589029 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 26
114588960 TAATTAATAT
*
114588970 AAAATATTAATAATTCAAT-AAATTG
1 AAAATATTAATAATTAAATAAAATTG
* *
114588995 AAAA-ATTAAATGATTAAATAAAATTT
1 AAAATATT-AATAATTAAATAAAATTG
114589021 AAAAT-TTAA
1 AAAATATTAA
114589030 GAGAAAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
24 3 0.10
25 15 0.52
26 11 0.38
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (26 bp):
AAAATATTAATAATTAAATAAAATTG
Found at i:114597401 original size:39 final size:39
Alignment explanation
Indices: 114597323--114597472 Score: 246
Period size: 39 Copynumber: 3.8 Consensus size: 39
114597313 TATGGTAGCC
* *
114597323 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
114597363 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
114597402 CGTACAATTGCCTTCGGGCTTAGCCCGGATGTCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
114597441 CACACAATTGCCTTCGGGCTTAGCCCGGATAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
114597473 TACCCAAACA
Statistics
Matches: 103, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 86 0.83
40 17 0.17
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:114609761 original size:25 final size:25
Alignment explanation
Indices: 114609729--114609776 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
114609719 TTATAATATG
* *
114609729 AAAATGACCGTTTTACCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
114609754 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
114609777 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:114609838 original size:20 final size:20
Alignment explanation
Indices: 114609813--114609878 Score: 123
Period size: 20 Copynumber: 3.3 Consensus size: 20
114609803 ATTTTGATAA
*
114609813 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
114609833 ACATGACATGTATGATATGC
1 ACATGACATGTATGATATGC
114609853 ACATGACATGTATGATATGC
1 ACATGACATGTATGATATGC
114609873 ACATGA
1 ACATGA
114609879 TGTATTCATA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (20 bp):
ACATGACATGTATGATATGC
Found at i:114610011 original size:24 final size:24
Alignment explanation
Indices: 114609929--114610118 Score: 251
Period size: 24 Copynumber: 8.0 Consensus size: 24
114609919 GAGGAAGTGA
*
114609929 AAAAGGGCTTATTCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
114609952 TAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
114609975 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
* *
114609999 AAATGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
114610023 AAAAGGGCTTACGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
114610047 AAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
114610071 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
114610095 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
114610119 ATGATAAAGC
Statistics
Matches: 150, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
23 44 0.29
24 95 0.63
25 11 0.07
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:114613446 original size:9 final size:9
Alignment explanation
Indices: 114613432--114613490 Score: 82
Period size: 9 Copynumber: 6.6 Consensus size: 9
114613422 ATAAGTATAA
114613432 AATTAACCG
1 AATTAACCG
114613441 AATTAACCG
1 AATTAACCG
* *
114613450 AATTAATCA
1 AATTAACCG
114613459 AATTAACCG
1 AATTAACCG
* *
114613468 AATTACCCA
1 AATTAACCG
114613477 AATTAACCG
1 AATTAACCG
114613486 AATTA
1 AATTA
114613491 TTTGTATAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:114613455 original size:18 final size:18
Alignment explanation
Indices: 114613432--114613490 Score: 91
Period size: 18 Copynumber: 3.3 Consensus size: 18
114613422 ATAAGTATAA
*
114613432 AATTAACCGAATTAACCG
1 AATTAACCAAATTAACCG
*
114613450 AATTAATCAAATTAACCG
1 AATTAACCAAATTAACCG
*
114613468 AATTACCCAAATTAACCG
1 AATTAACCAAATTAACCG
114613486 AATTA
1 AATTA
114613491 TTTGTATAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.25
Consensus pattern (18 bp):
AATTAACCAAATTAACCG
Found at i:114614674 original size:8 final size:8
Alignment explanation
Indices: 114614661--114614685 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
114614651 ATTAGGGACT
114614661 AAAATGTG
1 AAAATGTG
114614669 AAAATGTG
1 AAAATGTG
114614677 AAAATGTG
1 AAAATGTG
114614685 A
1 A
114614686 GGGCTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AAAATGTG
Found at i:114615383 original size:2 final size:2
Alignment explanation
Indices: 114615378--114615407 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
114615368 TATATATATA
114615378 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
114615408 AACATATGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:114616503 original size:18 final size:19
Alignment explanation
Indices: 114616480--114616515 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
114616470 GCGTTTGACC
114616480 TGTTTAACTTT-GAAAAAA
1 TGTTTAACTTTCGAAAAAA
*
114616498 TGTTTAAGTTTCGAAAAA
1 TGTTTAACTTTCGAAAAA
114616516 TTTTGTATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.42, C:0.06, G:0.14, T:0.39
Consensus pattern (19 bp):
TGTTTAACTTTCGAAAAAA
Found at i:114619077 original size:2 final size:2
Alignment explanation
Indices: 114619070--114619094 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
114619060 ATCTATGCAC
114619070 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
114619095 GGTATCTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:114619811 original size:39 final size:39
Alignment explanation
Indices: 114619757--114619888 Score: 194
Period size: 39 Copynumber: 3.4 Consensus size: 39
114619747 TGCATGGTAT
*
114619757 TGGAAAAATATCCGGACTTGAAGTCCACAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
*
114619796 TGGAAATATATCCGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
* * * *
114619835 TAGAAATATATCCGGACTTAAAGTCCGCAGGC-TAAGTGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTA-TGC
114619874 TGGAAAAATATCCGG
1 TGGAAAAATATCCGG
114619889 GCTAAGTCCC
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
38 2 0.02
39 83 0.98
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (39 bp):
TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
Found at i:114619913 original size:39 final size:39
Alignment explanation
Indices: 114619870--114620057 Score: 243
Period size: 39 Copynumber: 4.8 Consensus size: 39
114619860 CGCAGGCTAA
**
114619870 GTGCTGGAAAAATATCCGGGCTAAGTCCCGAAGGCATTC
1 GTGCTGGAATTATATCCGGGCTAAGTCCCGAAGGCATTC
*
114619909 GTGCT-GATATTATATCCGGGCTAAGTCCTGAAGGCATTC
1 GTGCTGGA-ATTATATCCGGGCTAAGTCCCGAAGGCATTC
*** *
114619948 GTGCTGGTGCTATATCCGGGCTAAGTCCCGAAGGTATTC
1 GTGCTGGAATTATATCCGGGCTAAGTCCCGAAGGCATTC
** *
114619987 GTGCTGGCGTTATATCTGGGCTAAGTCCCGAAGGCATTC
1 GTGCTGGAATTATATCCGGGCTAAGTCCCGAAGGCATTC
*
114620026 GTGCTGGTATTATATCCGGGCTTAAAGTCCCG
1 GTGCTGGAATTATATCCGGGC-T-AAGTCCCG
114620058 CATGCTTTGT
Statistics
Matches: 130, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
38 2 0.02
39 118 0.91
40 2 0.02
41 8 0.06
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (39 bp):
GTGCTGGAATTATATCCGGGCTAAGTCCCGAAGGCATTC
Found at i:114619923 original size:78 final size:77
Alignment explanation
Indices: 114619759--114620057 Score: 223
Period size: 78 Copynumber: 3.8 Consensus size: 77
114619749 CATGGTATTG
* * * *
114619759 GAAAAATATCCGGACTTGAAGTCCACAGGCTTTA-TGCTGGAAATATATCCGGACTTGAAGT-CC
1 GAAATATATCCGGACTT-AAGTCCGCAGGCATTAGTGCTGGAAATATATCCGGGC-T-AAGTCCC
* **
114619822 GCAGGC-TTTATGCT
63 GAAGGCATTCGTGCT
* *
114619836 AGAAATATATCCGGACTTAAAGTCCGCAGGC-TAAGTGCTGGAAAAATATCCGGGCTAAGTCCCG
1 -GAAATATATCCGGACTT-AAGTCCGCAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCCG
114619900 AAGGCATTCGTGCT
64 AAGGCATTCGTGCT
* * * * ***
114619914 GATATTATATCCGGGC-TAAGTCCTGAAGGCATTCGTGCTGGTGCTATATCCGGGCTAAGTCCCG
1 GA-AATATATCCGGACTTAAGTCC-GCAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCCG
*
114619978 AAGGTATTCGTGCT
64 AAGGCATTCGTGCT
*** * * * * * *
114619992 GGCGTTATATCTGGGC-TAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTTAAAGTCC
1 -GAAATATATCCGGACTTAAGT-CCGCAGGCATTAGTGCTGGAAATATATCCGGGC-T-AAGTCC
114620056 CG
62 CG
114620058 CATGCTTTGT
Statistics
Matches: 187, Mismatches: 24, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
76 10 0.05
77 18 0.10
78 147 0.79
79 4 0.02
80 8 0.04
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (77 bp):
GAAATATATCCGGACTTAAGTCCGCAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCCGAA
GGCATTCGTGCT
Found at i:114624642 original size:39 final size:39
Alignment explanation
Indices: 114624588--114624679 Score: 184
Period size: 39 Copynumber: 2.4 Consensus size: 39
114624578 GAATGTTCGA
114624588 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
114624627 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
114624666 GTGATATCCGGGCT
1 GTGATATCCGGGCT
114624680 GTGACAGCCC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:114626933 original size:40 final size:39
Alignment explanation
Indices: 114626830--114626966 Score: 166
Period size: 39 Copynumber: 3.5 Consensus size: 39
114626820 GGGTGTTACA
*
114626830 CGGGCTAAGCCCGAAGGCAATTGTGAGAGTTATGATATC
1 CGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATC
*
114626869 CGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATC
1 CGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATC
* ** * ** *
114626908 CGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTACCATAAC
1 CGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTATGATATC
*
114626948 CGGGCTATGTCCCGAAGGC
1 CGGGCTAAG-CCCGAAGGC
114626967 GTTTGAACGA
Statistics
Matches: 85, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 45 0.53
40 40 0.47
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.23
Consensus pattern (39 bp):
CGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATC
Found at i:114634934 original size:39 final size:39
Alignment explanation
Indices: 114634880--114635061 Score: 285
Period size: 39 Copynumber: 4.7 Consensus size: 39
114634870 GAATGTTCGA
*
114634880 GTGATATCCGGGCTAAGCCTGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
114634919 GTGATATCCGGGCTAAGCCCGAAGG-AATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
114634957 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
114634996 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
114635035 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
114635062 CTTTGTGCGG
Statistics
Matches: 135, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
38 38 0.28
39 88 0.65
40 9 0.07
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:114634969 original size:77 final size:78
Alignment explanation
Indices: 114634880--114635061 Score: 285
Period size: 77 Copynumber: 2.3 Consensus size: 78
114634870 GAATGTTCGA
* *
114634880 GTGATATCCGGGCTAAGCCTGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGCCCGAAGG-
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTATGATATCCGGGCTAAGCCCGAAGGC
114634944 AATTGTGCAAATT
66 AATTGTGCAAATT
* *
114634957 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGC
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTATGATATCCGGGCTAAGCCCGAAGGC
* *
114635022 AATTGTGCGAGTT
66 AATTGTGCAAATT
*
114635035 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
114635062 CTTTGTGCGG
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
77 60 0.62
78 27 0.28
79 9 0.09
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.24
Consensus pattern (78 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTATGATATCCGGGCTAAGCCCGAAGGC
AATTGTGCAAATT
Found at i:114637050 original size:23 final size:23
Alignment explanation
Indices: 114637023--114637068 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
114637013 CGATAAAAAG
*
114637023 ATCGATGAGTAAGTCGTATCAAT
1 ATCGATGAGTAAGCCGTATCAAT
114637046 ATCGATGAGTAAGCCGTATCAAT
1 ATCGATGAGTAAGCCGTATCAAT
114637069 CATTATCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (23 bp):
ATCGATGAGTAAGCCGTATCAAT
Found at i:114638272 original size:29 final size:30
Alignment explanation
Indices: 114638239--114638297 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
114638229 AAATTAATTT
114638239 TCAAG-TATAGGGGAAAAATGATCATTTTA
1 TCAAGTTATAGGGGAAAAATGATCATTTTA
* * *
114638268 TCAAGTTCTAGGGGCAAAATGGTCATTTTA
1 TCAAGTTATAGGGGAAAAATGATCATTTTA
114638298 CCTAATACGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 5 0.19
30 21 0.81
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.32
Consensus pattern (30 bp):
TCAAGTTATAGGGGAAAAATGATCATTTTA
Found at i:114646233 original size:12 final size:12
Alignment explanation
Indices: 114646216--114646248 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
114646206 CTGAGACACA
114646216 TGCCCGTGTCTT
1 TGCCCGTGTCTT
114646228 TGCCCGTGTCTT
1 TGCCCGTGTCTT
*
114646240 TGCCTGTGT
1 TGCCCGTGT
114646249 GTTTACTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.30, G:0.27, T:0.42
Consensus pattern (12 bp):
TGCCCGTGTCTT
Found at i:114647462 original size:48 final size:48
Alignment explanation
Indices: 114647325--114647464 Score: 208
Period size: 48 Copynumber: 2.9 Consensus size: 48
114647315 CACATGGTAG
* * ** *
114647325 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTAGATC
* * *
114647373 GATGCCAATACCATGTCCCAAACATGGTCTTACATGGGATCGTAGGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTAGATC
114647421 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTA
114647465 CATAACCCTA
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 82 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTAGATC
Found at i:114650784 original size:24 final size:24
Alignment explanation
Indices: 114650752--114650822 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
114650742 CTGTCAGGAA
114650752 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
114650776 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
114650800 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
114650823 GGAAATCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:114652286 original size:27 final size:27
Alignment explanation
Indices: 114652244--114652355 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
114652234 AGGAAGCGTC
*
114652244 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* * *
114652271 CTGGTGGCTCTACCACATATT-CCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
114652298 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
114652326 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
114652352 CTGG
1 CTGG
114652356 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 8 0.11
27 45 0.63
28 18 0.25
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:114653443 original size:11 final size:10
Alignment explanation
Indices: 114653415--114653448 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
114653405 AGCCTGTAAG
114653415 TATTCTGAAT
1 TATTCTGAAT
*
114653425 TTTTCTGAAT
1 TATTCTGAAT
114653435 ATATTCTGAAT
1 -TATTCTGAAT
114653446 TAT
1 TAT
114653449 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:114658662 original size:24 final size:24
Alignment explanation
Indices: 114658630--114658700 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
114658620 CTGTCAGAAG
114658630 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
114658654 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
114658678 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
114658701 GGAAATCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:114660225 original size:27 final size:26
Alignment explanation
Indices: 114660120--114660231 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
114660110 AGGAAGCGTC
* **
114660120 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
114660147 CTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
114660174 CTGGTGGCTCTGCCACGACTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
114660202 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
114660228 CTGG
1 CTGG
114660232 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 50 0.68
28 16 0.22
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:114660226 original size:54 final size:54
Alignment explanation
Indices: 114660120--114660231 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
114660110 AGGAAGCGTC
* * *
114660120 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAACTATCTAATCTGGTGACTCTGCCACATATATCTGTT
* * * *
114660174 CTGGTGGCTCTGCCACGACTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAACTATCT-AATCTGGTGACTCTGCCACATATATCTGTT
114660228 CTGG
1 CTGG
114660232 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAACTATCTAATCTGGTGACTCTGCCACATATATCTGTT
Found at i:114662915 original size:40 final size:40
Alignment explanation
Indices: 114662860--114662949 Score: 153
Period size: 40 Copynumber: 2.2 Consensus size: 40
114662850 TATTCGAATG
*
114662860 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
114662900 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
114662940 ATATCTGGGC
1 ATATCCGGGC
114662950 AGTTGTGCTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:114662957 original size:26 final size:26
Alignment explanation
Indices: 114662921--114662970 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
114662911 AAGTCCCGAA
*
114662921 GGCATTTGTGCTATTGACTATATCTG
1 GGCAGTTGTGCTATTGACTATATCTG
114662947 GGCAGTTGTGCTATTGACTATATC
1 GGCAGTTGTGCTATTGACTATATC
114662971 CAGGCTAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (26 bp):
GGCAGTTGTGCTATTGACTATATCTG
Found at i:114662995 original size:66 final size:66
Alignment explanation
Indices: 114662886--114663015 Score: 224
Period size: 66 Copynumber: 2.0 Consensus size: 66
114662876 CCGAAGGCTT
* *
114662886 TTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCTGGGCA
1 TTGTGCTAGTGACTATATCCAGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCA
114662951 G
66 G
* *
114662952 TTGTGCTATTGACTATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACTATATCCGGGC
1 TTGTGCTAGTGACTATATCCAGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGC
114663016 TAAGACCCGA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (66 bp):
TTGTGCTAGTGACTATATCCAGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCA
G
Found at i:114663007 original size:40 final size:39
Alignment explanation
Indices: 114662947--114663067 Score: 154
Period size: 40 Copynumber: 3.1 Consensus size: 39
114662937 ACTATATCTG
*
114662947 GGCAGTTGTGCTATTGACTATATCCAGGCTAAGTCCCGAA
1 GGCATTTGTGCTATTGACTATATCC-GGCTAAGTCCCGAA
* *
114662987 GGCTTTTGTGCTATTGACTATATCCGGGCTAAGACCCGAA
1 GGCATTTGTGCTATTGACTATATCC-GGCTAAGTCCCGAA
* * *
114663027 GGCATTTGTGCGAGTTG-CTATATCCGGCTAAATCTCGAA
1 GGCATTTGTGCTA-TTGACTATATCCGGCTAAGTCCCGAA
114663066 GG
1 GG
114663068 TACTTGGGTT
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
39 13 0.18
40 55 0.77
41 3 0.04
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (39 bp):
GGCATTTGTGCTATTGACTATATCCGGCTAAGTCCCGAA
Found at i:114663048 original size:106 final size:106
Alignment explanation
Indices: 114662860--114663050 Score: 330
Period size: 106 Copynumber: 1.8 Consensus size: 106
114662850 TATTCGAATG
* *
114662860 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
114662925 TTTGTGCTATTGACTATATCTGGGCAGTTGTGCTATTGACT
66 TTTGTGCGATTGACTATATCTGGGCAGTTGTGCTATTGACT
*
114662966 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
114663031 TTTGTGCGAGTTG-CTATATC
66 TTTGTGCGA-TTGACTATATC
114663051 CGGCTAAATC
Statistics
Matches: 80, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
106 77 0.96
107 3 0.04
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (106 bp):
ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGATTGACTATATCTGGGCAGTTGTGCTATTGACT
Found at i:114663319 original size:22 final size:22
Alignment explanation
Indices: 114663294--114663337 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
114663284 GAATATGCGT
*
114663294 ATATGAA-GCTATTCATTTAGTC
1 ATATGAACGCTATAC-TTTAGTC
114663316 ATATGAACGCTATACTTTAGTC
1 ATATGAACGCTATACTTTAGTC
114663338 GTAAATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.39
Consensus pattern (22 bp):
ATATGAACGCTATACTTTAGTC
Found at i:114668119 original size:50 final size:50
Alignment explanation
Indices: 114667989--114668230 Score: 222
Period size: 50 Copynumber: 4.8 Consensus size: 50
114667979 AGCCGAAGCT
* * * * *
114667989 ATCTGATACTCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* *
114668038 ATC-CAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * *
114668088 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACATACGTGATCGAAGTC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CC
* * * * * * *
114668139 AT-TGAGTACGCATAGTAGCCTGCACTTAGTACTATACATGCGACTTAA-T
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * *
114668188 AGTATGGTACACGTAGAAGCCTGCACTTAGTACTACACGCGTG
1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
114668231 TACTCACAAT
Statistics
Matches: 155, Mismatches: 31, Indels: 13
0.78 0.16 0.07
Matches are distributed among these distances:
48 1 0.01
49 39 0.25
50 76 0.49
51 39 0.25
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (50 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:114677987 original size:20 final size:18
Alignment explanation
Indices: 114677962--114678001 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
114677952 TCGGCCATGG
114677962 TATGCTTCATGAGCATGATT
1 TATGCTTC-T-AGCATGATT
*
114677982 TATGCTTCTTGCATGATT
1 TATGCTTCTAGCATGATT
114678000 TA
1 TA
114678002 AAAATTTGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
19 1 0.05
20 8 0.42
ACGTcount: A:0.23, C:0.15, G:0.17, T:0.45
Consensus pattern (18 bp):
TATGCTTCTAGCATGATT
Found at i:114678854 original size:40 final size:39
Alignment explanation
Indices: 114678697--114678856 Score: 263
Period size: 38 Copynumber: 4.2 Consensus size: 39
114678687 TGTGTATGAA
*
114678697 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
114678736 TGTGC-AGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
114678774 TGTGCGAG-T-TGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
114678811 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
114678851 TGTGCG
1 TGTGCG
114678857 GGTTACCATA
Statistics
Matches: 114, Mismatches: 3, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
37 36 0.32
38 39 0.34
39 22 0.19
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:114678887 original size:40 final size:37
Alignment explanation
Indices: 114678708--114678856 Score: 228
Period size: 37 Copynumber: 3.9 Consensus size: 37
114678698 GTGCGAATTG
114678708 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-AGTT
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG-T
114678745 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGT
1 -TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGT
114678783 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG-T
* *
114678821 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 -TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
114678857 GGTTACCATA
Statistics
Matches: 105, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
37 36 0.34
38 35 0.33
39 17 0.16
40 17 0.16
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (37 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGT
Found at i:114678908 original size:80 final size:76
Alignment explanation
Indices: 114678714--114678925 Score: 214
Period size: 75 Copynumber: 2.8 Consensus size: 76
114678704 ATTGTGATAT
** * *
114678714 CCGGGCTAAGCCCGAAGGCAATTGTGC-AGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
* *
114678778 CGAGTTGATAT
66 CGAGTTCATAA
** * *
114678789 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAG-CCCGAAGGCAATTGT
*
114678854 GCGGGTTACCATAA
65 GCGAGTT--CATAA
* ** *
114678868 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCC-GGTTAAACTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGGTTAAGC-CCGAAGG
114678926 TATGTGATTT
Statistics
Matches: 118, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
75 27 0.23
76 20 0.17
77 20 0.17
78 1 0.01
79 25 0.21
80 24 0.20
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (76 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
CGAGTTCATAA
Found at i:114686732 original size:39 final size:39
Alignment explanation
Indices: 114686678--114686879 Score: 359
Period size: 39 Copynumber: 5.2 Consensus size: 39
114686668 TGTGTATGAA
*
114686678 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
114686717 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
114686756 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
114686795 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
114686834 TGTGCGAGTTGTGATATCCAGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
114686874 TGTGCG
1 TGTGCG
114686880 GGTTACCATA
Statistics
Matches: 158, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
39 141 0.89
40 17 0.11
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:114689530 original size:27 final size:27
Alignment explanation
Indices: 114689480--114689565 Score: 129
Period size: 27 Copynumber: 3.2 Consensus size: 27
114689470 GGTAAAATAG
*
114689480 TCATTTTACCCTAT-AGGGTATTTCGG
1 TCATTTTACCCTATGAGGGTATTTCGA
* *
114689506 TCATTCTACCTTATGAGGGTATTTCGA
1 TCATTTTACCCTATGAGGGTATTTCGA
*
114689533 TCATTTTACCCTATGAGGATATTTCGA
1 TCATTTTACCCTATGAGGGTATTTCGA
114689560 TCATTT
1 TCATTT
114689566 GATCACATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 12 0.23
27 41 0.77
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTATGAGGGTATTTCGA
Found at i:114689767 original size:27 final size:27
Alignment explanation
Indices: 114689560--114689766 Score: 317
Period size: 27 Copynumber: 7.7 Consensus size: 27
114689550 GATATTTCGA
*
114689560 TCATTTGATCACATAAGGGCAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
* *
114689587 TCATTTTATCATATAAGGG-AAAATCA
1 TCATTTTATCACATAAGGGCAAAATCG
* * *
114689613 TCATTTTATAACATAATGGCAAAATCA
1 TCATTTTATCACATAAGGGCAAAATCG
*
114689640 TCATTTTATCACATAAGGGCAAAATTG
1 TCATTTTATCACATAAGGGCAAAATCG
*
114689667 TCATTTTATCACATAAGGGCAAAATCC
1 TCATTTTATCACATAAGGGCAAAATCG
*
114689694 TCATTTTATCACATAAGGGAAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
*
114689721 TCATTTTATCACATAAGGGTAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
114689748 TCATTTTATCACATAAGGG
1 TCATTTTATCACATAAGGG
114689767 TTCAGGTACG
Statistics
Matches: 164, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
26 22 0.13
27 142 0.87
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (27 bp):
TCATTTTATCACATAAGGGCAAAATCG
Found at i:114690943 original size:44 final size:44
Alignment explanation
Indices: 114690893--114690980 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
114690883 TTGAGAAGTA
*
114690893 AGAATCCCATTTCAGCACATACTCCACCTCCATTGCTCCATTCC
1 AGAATCCCATTTCAACACATACTCCACCTCCATTGCTCCATTCC
*
114690937 AGAATCCTATTTCAACACATACTCCACCTCCATTGCTCCATTCC
1 AGAATCCCATTTCAACACATACTCCACCTCCATTGCTCCATTCC
114690981 TTGATAATAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.26, C:0.40, G:0.06, T:0.28
Consensus pattern (44 bp):
AGAATCCCATTTCAACACATACTCCACCTCCATTGCTCCATTCC
Found at i:114702775 original size:27 final size:27
Alignment explanation
Indices: 114702693--114702880 Score: 142
Period size: 27 Copynumber: 7.0 Consensus size: 27
114702683 AGTGTTTGCT
* * * * *
114702693 AGTTCATTTGGCAAACTGGGATTTGCT
1 AGTTAATTTGGCAAGCTGGGGTTCGCC
* * * *
114702720 AGTTAATTTGGCGAGTTGGGTTTTGCC
1 AGTTAATTTGGCAAGCTGGGGTTCGCC
* * *
114702747 AGTTAATTTCGCAAGTTGGGGTTCTCC
1 AGTTAATTTGGCAAGCTGGGGTTCGCC
** * * * *
114702774 AGTTGGTTGGGCGAGCTAGGGTTCGCT
1 AGTTAATTTGGCAAGCTGGGGTTCGCC
114702801 AGTTAATTTGGCAAGCTGGGGTTCGCC
1 AGTTAATTTGGCAAGCTGGGGTTCGCC
** * * *
114702828 AGTTGGTTTGGCGAGCTAGGGTTCTCC
1 AGTTAATTTGGCAAGCTGGGGTTCGCC
* * *
114702855 AATGAATTTGGTAAGCTGGGGTTCGC
1 AGTTAATTTGGCAAGCTGGGGTTCGC
114702881 TTATTGGTTT
Statistics
Matches: 122, Mismatches: 39, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 122 1.00
ACGTcount: A:0.17, C:0.15, G:0.34, T:0.34
Consensus pattern (27 bp):
AGTTAATTTGGCAAGCTGGGGTTCGCC
Found at i:114702815 original size:54 final size:54
Alignment explanation
Indices: 114702744--114702880 Score: 193
Period size: 54 Copynumber: 2.5 Consensus size: 54
114702734 GTTGGGTTTT
* * *
114702744 GCCAGTTAATTTCGCAAGTTGGGGTTCTCCAGTTGGTTGGGCGAGCTAGGGTTC
1 GCCAGTTAATTTGGCAAGCTGGGGTTCGCCAGTTGGTTGGGCGAGCTAGGGTTC
* *
114702798 GCTAGTTAATTTGGCAAGCTGGGGTTCGCCAGTTGGTTTGGCGAGCTAGGGTTC
1 GCCAGTTAATTTGGCAAGCTGGGGTTCGCCAGTTGGTTGGGCGAGCTAGGGTTC
* * * *
114702852 TCCAATGAATTTGGTAAGCTGGGGTTCGC
1 GCCAGTTAATTTGGCAAGCTGGGGTTCGC
114702881 TTATTGGTTT
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 73 1.00
ACGTcount: A:0.16, C:0.18, G:0.35, T:0.31
Consensus pattern (54 bp):
GCCAGTTAATTTGGCAAGCTGGGGTTCGCCAGTTGGTTGGGCGAGCTAGGGTTC
Found at i:114702892 original size:54 final size:54
Alignment explanation
Indices: 114702698--114702880 Score: 179
Period size: 54 Copynumber: 3.4 Consensus size: 54
114702688 TTGCTAGTTC
* * * * ** * * * *
114702698 ATTTGGCAAACTGGGATTTGCTAGTTAATTTGGCGAG-TTGGGTTTTGCCAGTTA
1 ATTTGGCAAGCTGGGGTTCGCCAGTTGGTTTGGCGAGCTAGGG-TTCGCCAATGA
* * * * * * *
114702752 ATTTCGCAAGTTGGGGTTCTCCAGTTGGTTGGGCGAGCTAGGGTTCGCTAGTTA
1 ATTTGGCAAGCTGGGGTTCGCCAGTTGGTTTGGCGAGCTAGGGTTCGCCAATGA
*
114702806 ATTTGGCAAGCTGGGGTTCGCCAGTTGGTTTGGCGAGCTAGGGTTCTCCAATGA
1 ATTTGGCAAGCTGGGGTTCGCCAGTTGGTTTGGCGAGCTAGGGTTCGCCAATGA
*
114702860 ATTTGGTAAGCTGGGGTTCGC
1 ATTTGGCAAGCTGGGGTTCGC
114702881 TTATTGGTTT
Statistics
Matches: 106, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
54 102 0.96
55 4 0.04
ACGTcount: A:0.17, C:0.15, G:0.34, T:0.34
Consensus pattern (54 bp):
ATTTGGCAAGCTGGGGTTCGCCAGTTGGTTTGGCGAGCTAGGGTTCGCCAATGA
Found at i:114707806 original size:49 final size:49
Alignment explanation
Indices: 114707669--114707821 Score: 198
Period size: 49 Copynumber: 3.1 Consensus size: 49
114707659 GTGCTACTCG
*
114707669 GATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCC
1 GATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
* * * * * *
114707718 GAAAACTATGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTA
1 GATAA-T-TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
* * *
114707769 GATTATTGGTCGCATGTGTAGTACTATGTGTAGGCTACTATGCGTACCA
1 GATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
114707818 GATA
1 GATA
114707822 GCTTCTGCTA
Statistics
Matches: 85, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
49 43 0.51
50 2 0.02
51 40 0.47
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (49 bp):
GATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
Found at i:114710825 original size:15 final size:15
Alignment explanation
Indices: 114710805--114710849 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
114710795 GTATCGTATC
114710805 TTGGGTTTCTTTATT
1 TTGGGTTTCTTTATT
*
114710820 TTGGGTTT-TTCTATC
1 TTGGGTTTCTT-TATT
*
114710835 TTGGATTTCTTTATT
1 TTGGGTTTCTTTATT
114710850 CAGTTTTCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 21 0.84
16 2 0.08
ACGTcount: A:0.09, C:0.09, G:0.18, T:0.64
Consensus pattern (15 bp):
TTGGGTTTCTTTATT
Found at i:114713391 original size:49 final size:49
Alignment explanation
Indices: 114713319--114713506 Score: 243
Period size: 49 Copynumber: 3.8 Consensus size: 49
114713309 TGAGGTCACG
* **
114713319 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
* * * * *
114713368 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-AAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATAA-T-TGGTCGCA
*
114713419 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
* *
114713468 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
114713507 GCTTCGGCTA
Statistics
Matches: 118, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
49 74 0.63
50 6 0.05
51 38 0.32
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
Found at i:114713489 original size:100 final size:100
Alignment explanation
Indices: 114713314--114713501 Score: 331
Period size: 100 Copynumber: 1.9 Consensus size: 100
114713304 TATTGTGAGG
**
114713314 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
114713379 AAGTGCAGGCTACTATGCGTACCCAAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCAAAAACTGTGA
* *
114713414 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
114713479 AAGTGTAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
114713502 AGATAGCTTC
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCAAAAACTGTGA
Found at i:114716514 original size:8 final size:8
Alignment explanation
Indices: 114716490--114716525 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
114716480 TAAAAAGTAG
*
114716490 AAATAAAA
1 AAATAATA
114716498 AAATGAATA
1 AAAT-AATA
114716507 AAATAATA
1 AAATAATA
114716515 AAATAATA
1 AAATAATA
114716523 AAA
1 AAA
114716526 ATTCTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
8 19 0.73
9 7 0.27
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (8 bp):
AAATAATA
Found at i:114716527 original size:17 final size:17
Alignment explanation
Indices: 114716490--114716525 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
114716480 TAAAAAGTAG
114716490 AAATAAAAAAATGAATA
1 AAATAAAAAAATGAATA
*
114716507 AAATAATAAAAT-AATA
1 AAATAAAAAAATGAATA
114716523 AAA
1 AAA
114716526 ATTCTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (17 bp):
AAATAAAAAAATGAATA
Found at i:114720709 original size:6 final size:6
Alignment explanation
Indices: 114720698--114720737 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
114720688 AGGTCTCCAA
* *
114720698 AAATGG AAATGG AAATGA AAATGG AAATGA AAATGG AAAT
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAAT
114720738 TTACAATTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.57, C:0.00, G:0.25, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:114720719 original size:12 final size:12
Alignment explanation
Indices: 114720698--114720737 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
114720688 AGGTCTCCAA
*
114720698 AAATGGAAATGG
1 AAATGAAAATGG
114720710 AAATGAAAATGG
1 AAATGAAAATGG
114720722 AAATGAAAATGG
1 AAATGAAAATGG
114720734 AAAT
1 AAAT
114720738 TTACAATTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.57, C:0.00, G:0.25, T:0.17
Consensus pattern (12 bp):
AAATGAAAATGG
Found at i:114727250 original size:53 final size:53
Alignment explanation
Indices: 114727068--114727274 Score: 218
Period size: 53 Copynumber: 3.8 Consensus size: 53
114727058 ATTAGGGTTT
* * * * * *
114727068 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * *
114727122 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
114727177 AAAGATCCCATGTAAGACCATG-CTAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGTC-AAGACATGGCAATGGTAAGTTCATAAGGC
*
114727230 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
114727275 TAAAAAGGAA
Statistics
Matches: 124, Mismatches: 25, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
53 45 0.36
54 40 0.32
55 39 0.31
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:114730904 original size:46 final size:45
Alignment explanation
Indices: 114730853--114731025 Score: 156
Period size: 46 Copynumber: 3.8 Consensus size: 45
114730843 GTTGAGCATC
114730853 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTT
* ** * * *
114730899 TGAACTCGTTGAGTTGAGTCCGAGTT-TGTGA-GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G--TT
***
114730946 CGAACTCGTTGAGTTGAG-CCTGAGTTCACTTATGGATGCGAACACT
1 CGAACTCGTTGAGTTGAGTCC-GAGTTCACTTA-GGATGCGAATGTT
*
114730992 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
114731026 GGCGGGTTAC
Statistics
Matches: 100, Mismatches: 16, Indels: 23
0.72 0.12 0.17
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 55 0.55
47 25 0.25
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATGTT
Found at i:114731007 original size:93 final size:93
Alignment explanation
Indices: 114730848--114731017 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
114730838 GGATGGTTGA
*** *
114730848 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACACTCGAACTCGTTGAGT
114730913 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
* *
114730941 GCATCCGAACTCGTTGAGTTGAG-CCTGAGTTCACTTATGGATGCGAACACTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCC-GAGTTCACTTACGGATGCGAACACTCGAACTCGTTGAG
114731005 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
114731018 CACTTAGGGG
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACACTCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:114737411 original size:53 final size:53
Alignment explanation
Indices: 114737291--114737438 Score: 170
Period size: 53 Copynumber: 2.8 Consensus size: 53
114737281 GGGTTTAAGT
* * * *
114737291 ATACCAAGTAAGACCATGCCAAGGTATGACATTGGTAAGTTTTACAAGGCAAGG
1 ATACCAAGTAAGACCATGCCAAGGCATGGCAATGGTAAG-TTCACAAGGCAAGG
* * ** * *
114737345 AAATCATTTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGG
1 ATACCAAGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCACAAGGCAAGG
* * *
114737398 ATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 ATACCAAGTAAGACCATGCCAAGGCATGGCAATGGTAAGTT
114737439 TAAAAAGGAA
Statistics
Matches: 77, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
53 46 0.60
54 31 0.40
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (53 bp):
ATACCAAGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCACAAGGCAAGG
Found at i:114739323 original size:22 final size:21
Alignment explanation
Indices: 114739295--114739345 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
114739285 ATCCCAAATA
**
114739295 GGCGTGTGTTTTGGGACACACG
1 GGCGTGTGTGGTGGG-CACACG
* *
114739317 GGCGTGTCTGGTGGGCACACT
1 GGCGTGTGTGGTGGGCACACG
114739338 GGCGTGTG
1 GGCGTGTG
114739346 AGTTCCTCAC
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.10, C:0.20, G:0.45, T:0.25
Consensus pattern (21 bp):
GGCGTGTGTGGTGGGCACACG
Found at i:114740429 original size:37 final size:37
Alignment explanation
Indices: 114740384--114740456 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
114740374 GGTTTGATAT
114740384 GGAGTGATTGGTTGGATGAGCTTAATAGCTCTATTGA
1 GGAGTGATTGGTTGGATGAGCTTAATAGCTCTATTGA
114740421 GGAGTGATTGGTTGGATGAGCTTAATAGCTCTATTG
1 GGAGTGATTGGTTGGATGAGCTTAATAGCTCTATTG
114740457 TTTTGTGAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.23, C:0.08, G:0.33, T:0.36
Consensus pattern (37 bp):
GGAGTGATTGGTTGGATGAGCTTAATAGCTCTATTGA
Found at i:114741397 original size:13 final size:14
Alignment explanation
Indices: 114741360--114741390 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
114741350 CCTTCAGGAG
114741360 TTTTGGGTTTTTTC
1 TTTTGGGTTTTTTC
114741374 TTTTGGGTTTTTTC
1 TTTTGGGTTTTTTC
114741388 TTT
1 TTT
114741391 GTGTTTTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.00, C:0.06, G:0.19, T:0.74
Consensus pattern (14 bp):
TTTTGGGTTTTTTC
Found at i:114745047 original size:22 final size:22
Alignment explanation
Indices: 114745019--114745060 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
114745009 CCCCAACATG
114745019 AAGGAGAAAGAGGAATTAATCC
1 AAGGAGAAAGAGGAATTAATCC
114745041 AAGGAGAAAGAGGAATTAAT
1 AAGGAGAAAGAGGAATTAAT
114745061 TCTACATTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.52, C:0.05, G:0.29, T:0.14
Consensus pattern (22 bp):
AAGGAGAAAGAGGAATTAATCC
Found at i:114745246 original size:249 final size:249
Alignment explanation
Indices: 114744803--114745272 Score: 868
Period size: 249 Copynumber: 1.9 Consensus size: 249
114744793 CGCATTCCTT
*
114744803 GGAAATAATTCTACATTACCAGTTATTATTTCATCTAATTTACAACCCAAGGAGAAAGAGAAATT
1 GGAAATAATTCTACATTACCAGTTATTATTGCATCTAATTTACAACCCAAGGAGAAAGAGAAATT
**
114744868 AATCCAAGAATTAAAAGAACATAAAAGGGCCATAGCTTGGAAAATTTCTGACATTAAAGGGATCA
66 AATCCAAGAATTAAAAGAACATAAAAAAGCCATAGCTTGGAAAATTTCTGACATTAAAGGGATCA
114744933 GCCCTTCTTTTTGCACCCACAAAATTTTAATGGAAGATGAATATAAACCAGATGTGCAAGCTCAA
131 GCCCTTCTTTTTGCACCCACAAAATTTTAATGGAAGATGAATATAAACCAGATGTGCAAGCTCAA
114744998 AGACGACTAAACCCCAACATGAAGGAGAAAGAGGAATTAATCCAAGGAGAAAGA
196 AGACGACTAAACCCCAACATGAAGGAGAAAGAGGAATTAATCCAAGGAGAAAGA
* * *
114745052 GGAATTAATTCTACATTACCAGTTATTATTGCATCTAATTTACAACCCAAGGAGAAGGAGGAATT
1 GGAAATAATTCTACATTACCAGTTATTATTGCATCTAATTTACAACCCAAGGAGAAAGAGAAATT
*
114745117 AATCCAAGTATTAAAAGAACATAAAAAAGCCATAGCTTGGAAAATTTCTGACATTAAAGGGATCA
66 AATCCAAGAATTAAAAGAACATAAAAAAGCCATAGCTTGGAAAATTTCTGACATTAAAGGGATCA
114745182 GCCCTTCTTTTTGCACCCACAAAATTTTAATGGAAGATGAATATAAACCAGATGTGCAAGCTCAA
131 GCCCTTCTTTTTGCACCCACAAAATTTTAATGGAAGATGAATATAAACCAGATGTGCAAGCTCAA
*
114745247 AGACGACTGAACCCCAACATGAAGGA
196 AGACGACTAAACCCCAACATGAAGGA
114745273 AGTTGTTAAA
Statistics
Matches: 213, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
249 213 1.00
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.24
Consensus pattern (249 bp):
GGAAATAATTCTACATTACCAGTTATTATTGCATCTAATTTACAACCCAAGGAGAAAGAGAAATT
AATCCAAGAATTAAAAGAACATAAAAAAGCCATAGCTTGGAAAATTTCTGACATTAAAGGGATCA
GCCCTTCTTTTTGCACCCACAAAATTTTAATGGAAGATGAATATAAACCAGATGTGCAAGCTCAA
AGACGACTAAACCCCAACATGAAGGAGAAAGAGGAATTAATCCAAGGAGAAAGA
Found at i:114750779 original size:13 final size:14
Alignment explanation
Indices: 114750742--114750772 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
114750732 CCTTCAGGAG
114750742 TTTTGGGTTTTTTC
1 TTTTGGGTTTTTTC
114750756 TTTTGGGTTTTTTC
1 TTTTGGGTTTTTTC
114750770 TTT
1 TTT
114750773 GTGTTTTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.00, C:0.06, G:0.19, T:0.74
Consensus pattern (14 bp):
TTTTGGGTTTTTTC
Found at i:114756885 original size:30 final size:30
Alignment explanation
Indices: 114756851--114756934 Score: 141
Period size: 30 Copynumber: 2.8 Consensus size: 30
114756841 ATTTCCAAAC
114756851 CTAGGGGTAAAATGGTCATTTTGCAAAAGT
1 CTAGGGGTAAAATGGTCATTTTGCAAAAGT
*
114756881 CTAGGGGTAAAATGGTCATTTTGTAAAAGT
1 CTAGGGGTAAAATGGTCATTTTGCAAAAGT
* *
114756911 TTAGGGGCAAAATGGTCATTTTGC
1 CTAGGGGTAAAATGGTCATTTTGC
114756935 CCAATTTTAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.31, C:0.10, G:0.27, T:0.32
Consensus pattern (30 bp):
CTAGGGGTAAAATGGTCATTTTGCAAAAGT
Found at i:114757418 original size:46 final size:45
Alignment explanation
Indices: 114757271--114757487 Score: 201
Period size: 46 Copynumber: 4.7 Consensus size: 45
114757261 TTTGTGTGCT
*
114757271 AGTGTAAGACATGTCTGGGACATGCATCGGC-C-ATAT-TACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGATGT---A-AGCC
* * * *
114757317 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAAAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TCGAGATGTAAGCC
* *
114757365 AGTGTAAGACATGTCTGGGACATGCATCAGACTCGAAATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCTCGAGATGTAAGCC
* * *
114757411 AGTGTAAGACATGTCTGGAACATGCATCAGCTACGAGATGT--GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGATGTAAGCC
*
114757455 ATTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
114757488 ATCATGCCCT
Statistics
Matches: 142, Mismatches: 19, Indels: 20
0.78 0.10 0.11
Matches are distributed among these distances:
44 10 0.07
45 15 0.11
46 64 0.45
47 30 0.21
48 20 0.14
49 1 0.01
51 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGATGTAAGCC
Found at i:114769351 original size:20 final size:21
Alignment explanation
Indices: 114769312--114769351 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
114769302 GTCATAATGC
114769312 CCACACGGACGTGTTGCCCTT
1 CCACACGGACGTGTTGCCCTT
*
114769333 CCACACGGGCGTG-TGCCCT
1 CCACACGGACGTGTTGCCCT
114769352 GCTTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACGGACGTGTTGCCCTT
Found at i:114771586 original size:33 final size:33
Alignment explanation
Indices: 114771549--114771615 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
114771539 AAATCTGAGT
114771549 AAAAATCTTAGATTTTTACTTTATATGTTCCTC
1 AAAAATCTTAGATTTTTACTTTATATGTTCCTC
114771582 AAAAATCTTAGATTTTTACTTTATATGTTCCTC
1 AAAAATCTTAGATTTTTACTTTATATGTTCCTC
114771615 A
1 A
114771616 CTTATGCTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.31, C:0.15, G:0.06, T:0.48
Consensus pattern (33 bp):
AAAAATCTTAGATTTTTACTTTATATGTTCCTC
Found at i:114774100 original size:24 final size:24
Alignment explanation
Indices: 114774064--114774122 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
114774054 TGACTCCTCC
*
114774064 TATTTTT-TATTATTATTTATTCT
1 TATTTTTATTTTATTATTTATTCT
* *
114774087 TATTTTTATTTTATTTTTTATTTT
1 TATTTTTATTTTATTATTTATTCT
* *
114774111 TCTTTTGATTTT
1 TATTTTTATTTT
114774123 TATTTTCATT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 7 0.23
24 23 0.77
ACGTcount: A:0.17, C:0.03, G:0.02, T:0.78
Consensus pattern (24 bp):
TATTTTTATTTTATTATTTATTCT
Found at i:114774123 original size:7 final size:6
Alignment explanation
Indices: 114774073--114774133 Score: 61
Period size: 6 Copynumber: 10.0 Consensus size: 6
114774063 CTATTTTTTA
* * *
114774073 TTATTAT TTATTC TTATTT TTA-TT TTATTTT TTATTT TTCTTT TGATTT
1 TTATT-T TTATTT TTATTT TTATTT TTA-TTT TTATTT TTATTT TTATTT
*
114774122 TTATTT TCATTT
1 TTATTT TTATTT
114774134 CAATTTTATT
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
5 5 0.11
6 30 0.67
7 10 0.22
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (6 bp):
TTATTT
Found at i:114774128 original size:24 final size:26
Alignment explanation
Indices: 114774067--114774153 Score: 67
Period size: 25 Copynumber: 3.4 Consensus size: 26
114774057 CTCCTCCTAT
* **
114774067 TTTTTATTATTATTTATTCTTATTTT
1 TTTTTATTTTTATTTATTCTTATTGA
114774093 TATTTTATTTTTTATTT-TTCTT-TTGA
1 T-TTTTA-TTTTTATTTATTCTTATTGA
*
114774119 TTTTTATTTTCATTTCAATT-TTATT-A
1 TTTTTATTTTTATTT--ATTCTTATTGA
114774145 -TTTTATTTT
1 TTTTTATTTT
114774154 GAAAGACATA
Statistics
Matches: 51, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
24 8 0.16
25 14 0.27
26 7 0.14
27 14 0.27
28 8 0.16
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (26 bp):
TTTTTATTTTTATTTATTCTTATTGA
Found at i:114791310 original size:13 final size:13
Alignment explanation
Indices: 114791288--114791320 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
114791278 AAGGGTTTGT
114791288 TTAT-TAAACTAA
1 TTATCTAAACTAA
114791300 TTATCTAAACTAA
1 TTATCTAAACTAA
*
114791313 TTAACTAA
1 TTATCTAA
114791321 TTTAATTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:114794024 original size:39 final size:40
Alignment explanation
Indices: 114793971--114794088 Score: 143
Period size: 39 Copynumber: 3.0 Consensus size: 40
114793961 AACCGGTTAT
114793971 AACCACGT-GCACGAATGCCTTCGGGTCTTAGCCCGGATAG
1 AACCAC-TAGCACGAATGCCTTCGGGTCTTAGCCCGGATAG
** * *
114794011 AATGACTCG-ACGAATGCCTTCGGGTCTTAGCCCGGATAT
1 AACCACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATAG
* *
114794050 AGCCACTAGCAC-AATTGCCTTCGGGTCTTAACCCGGATA
1 AACCACTAGCACGAA-TGCCTTCGGGTCTTAGCCCGGATA
114794089 TAATTTCCAG
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
39 37 0.55
40 30 0.45
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.23
Consensus pattern (40 bp):
AACCACTAGCACGAATGCCTTCGGGTCTTAGCCCGGATAG
Found at i:114794085 original size:40 final size:39
Alignment explanation
Indices: 114793963--114794091 Score: 145
Period size: 40 Copynumber: 3.3 Consensus size: 39
114793953 CGGAATACAA
*
114793963 CCGGTTATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAG-ACGAATGCCTTCGGGTCTTAGC
* ** *
114794003 CCGGATAGAATGACTCGACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGACGAATGCCTTCGGGTCTTAGC
* *
114794042 CCGGATATAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAG-ACGAA-TGCCTTCGGGTCTTAGC
114794082 CCGGATATAA
1 CCGGATATAA
114794092 TTTCCAGCAA
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
39 37 0.49
40 38 0.51
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCACTAGACGAATGCCTTCGGGTCTTAGC
Found at i:114796188 original size:20 final size:20
Alignment explanation
Indices: 114796145--114796190 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
114796135 AAAGTAATCT
* * *
114796145 TCATTTTTCTCATTTTACTT
1 TCATTTTGCTCATTATACTA
*
114796165 TCATTTTGCTCATTATGCTA
1 TCATTTTGCTCATTATACTA
114796185 TCATTT
1 TCATTT
114796191 AATTTGCATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.17, C:0.20, G:0.04, T:0.59
Consensus pattern (20 bp):
TCATTTTGCTCATTATACTA
Found at i:114796291 original size:23 final size:23
Alignment explanation
Indices: 114796265--114796311 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
114796255 CATTCTATTG
*
114796265 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
114796288 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
114796311 T
1 T
114796312 AATGTCACGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:114801592 original size:41 final size:41
Alignment explanation
Indices: 114801481--114801592 Score: 120
Period size: 41 Copynumber: 2.7 Consensus size: 41
114801471 AATATTTGGG
* * ** * * *
114801481 CTTTGAGCCTAGCAAGCCTTGTGCTGGTGAATTTATTCGGG
1 CTTTGAGCCTAGCAGGCCTTGTGCTGGTGTATAAAATCAGA
114801522 C-TTGATGCCTAGCAGG-CTTGTTGCTGGTGTATAAAATCAGA
1 CTTTGA-GCCTAGCAGGCCTTG-TGCTGGTGTATAAAATCAGA
*
114801563 CTTTGAGTCTAGCAGGCCTTGTGCTGGTGT
1 CTTTGAGCCTAGCAGGCCTTGTGCTGGTGT
114801593 GTGATACAGC
Statistics
Matches: 59, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
40 8 0.14
41 43 0.73
42 8 0.14
ACGTcount: A:0.18, C:0.19, G:0.29, T:0.34
Consensus pattern (41 bp):
CTTTGAGCCTAGCAGGCCTTGTGCTGGTGTATAAAATCAGA
Found at i:114802594 original size:2 final size:2
Alignment explanation
Indices: 114802587--114802612 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
114802577 TTGGATGTGT
114802587 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
114802613 GTGTATATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:114803488 original size:5 final size:5
Alignment explanation
Indices: 114803458--114803505 Score: 55
Period size: 5 Copynumber: 9.6 Consensus size: 5
114803448 TTATTAATTA
*
114803458 TTTAT TGTTAT TGTTAT TAT-T TTTAT TTTAT TTTAT TTTAT TTT-T TTT
1 TTTAT T-TTAT T-TTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
114803506 GGACGTGCTT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
4 7 0.18
5 21 0.54
6 11 0.28
ACGTcount: A:0.17, C:0.00, G:0.04, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:114803493 original size:19 final size:22
Alignment explanation
Indices: 114803446--114803494 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
114803436 TTAATATTCC
114803446 TTTTATTAATTATTTATTGTTA
1 TTTTATTAATTATTTATTGTTA
114803468 TTGTTATT-ATT-TTTATT-TTA
1 TT-TTATTAATTATTTATTGTTA
114803488 TTTTATT
1 TTTTATT
114803495 TTATTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 5 0.19
20 5 0.19
21 6 0.23
22 5 0.19
23 5 0.19
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.73
Consensus pattern (22 bp):
TTTTATTAATTATTTATTGTTA
Found at i:114806347 original size:7 final size:7
Alignment explanation
Indices: 114806335--114806368 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
114806325 TTGCAAATGA
114806335 ATCATTT
1 ATCATTT
114806342 ATCATTT
1 ATCATTT
114806349 ATCATTT
1 ATCATTT
114806356 ATCATTT
1 ATCATTT
114806363 -TCATTT
1 ATCATTT
114806369 TGAGAAAACC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.22
7 21 0.78
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (7 bp):
ATCATTT
Found at i:114810189 original size:41 final size:42
Alignment explanation
Indices: 114810096--114810248 Score: 150
Period size: 42 Copynumber: 3.6 Consensus size: 42
114810086 AAAGATTACG
*
114810096 TGTAAGACCATATCTTGGATATGGCATCGATACGAGACTTCG
1 TGTAAGACCATATCTTGGATATGGCATCGATACGAGACTTCA
* *
114810138 TGTAAGACCATAT-TTGGGATATGGCATTGATATGA-ACTTCA
1 TGTAAGACCATATCTT-GGATATGGCATCGATACGAGACTTCA
* ** * ** *
114810179 TGTAAGACCATAGCAAGGCTATTGGCATAAATACGAGA-TCCCA
1 TGTAAGACCATATCTTGGATA-TGGCATCGATACGAGACT-TCA
* *
114810222 TGTAAGACCATATCTGGGATACGGCAT
1 TGTAAGACCATATCTTGGATATGGCAT
114810249 TGGATTGGTA
Statistics
Matches: 90, Mismatches: 16, Indels: 10
0.78 0.14 0.09
Matches are distributed among these distances:
41 23 0.26
42 47 0.52
43 20 0.22
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (42 bp):
TGTAAGACCATATCTTGGATATGGCATCGATACGAGACTTCA
Found at i:114811887 original size:71 final size:71
Alignment explanation
Indices: 114811803--114811966 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
114811793 CGATTTGTCT
*
114811803 CGTAGCTCTCTTGTCTACATGGTTTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
114811868 CTTTCA
66 CTTTCA
114811874 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
114811939 CTTTCA
66 CTTTCA
114811945 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
114811967 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:114812004 original size:71 final size:70
Alignment explanation
Indices: 114811803--114812000 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
114811793 CGATTTGTCT
* * * * *
114811803 CGTAGCTCTCTTGTCTACATGGTTTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
114811868 CTTTCA
65 CTTTCA
* * * *
114811874 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
114811939 CTTTCA
65 CTTTCA
* *
114811945 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
114812001 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 95 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:114819458 original size:71 final size:71
Alignment explanation
Indices: 114819374--114819537 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
114819364 CGATTTGTCT
114819374 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
114819439 CTTTCA
66 CTTTCA
114819445 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
114819510 CTTTCA
66 CTTTCA
114819516 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
114819538 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:114819575 original size:71 final size:70
Alignment explanation
Indices: 114819374--114819571 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
114819364 CGATTTGTCT
* * * *
114819374 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
114819439 CTTTCA
65 CTTTCA
* * * *
114819445 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
114819510 CTTTCA
65 CTTTCA
* *
114819516 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
114819572 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:114827247 original size:40 final size:39
Alignment explanation
Indices: 114827183--114827379 Score: 254
Period size: 39 Copynumber: 5.1 Consensus size: 39
114827173 GCTACTCGTT
* * * *** *
114827183 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
*
114827223 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
*
114827263 CAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
*
114827302 CAATTGCCTTCGGGCTTAGCCCGGATATCACAACT--CA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
* *
114827339 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
114827378 CA
1 CA
114827380 TTCATACACA
Statistics
Matches: 144, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
37 36 0.25
39 63 0.44
40 45 0.31
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.22
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
Found at i:114827297 original size:39 final size:39
Alignment explanation
Indices: 114827219--114827379 Score: 272
Period size: 39 Copynumber: 4.2 Consensus size: 39
114827209 TATGGTAACC
* *
114827219 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
114827259 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
114827298 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
114827337 --CACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
114827374 CGCACA
1 CGCACA
114827380 TTCATACACA
Statistics
Matches: 116, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
37 36 0.31
39 63 0.54
40 17 0.15
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.22
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:114827361 original size:76 final size:78
Alignment explanation
Indices: 114827219--114827379 Score: 272
Period size: 76 Copynumber: 2.1 Consensus size: 78
114827209 TATGGTAACC
114827219 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTC-CACAATTGCCTTCGGGCTTAGCC
114827284 CGGATATCACAACT
65 CGGATATCACAACT
* *
114827298 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT-CACAATTGCCTTCGGGCTTAGCCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCCACAATTGCCTTCGGGCTTAGCCC
*
114827361 GGATATCACAATT
66 GGATATCACAACT
114827374 CGCACA
1 CGCACA
114827380 TTCATACACA
Statistics
Matches: 79, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
76 42 0.53
78 20 0.25
79 17 0.22
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.22
Consensus pattern (78 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCCACAATTGCCTTCGGGCTTAGCCC
GGATATCACAACT
Found at i:114835255 original size:27 final size:27
Alignment explanation
Indices: 114835198--114835259 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
114835188 GGGCAAAATG
* *
114835198 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCA
* *
114835225 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCTACAAGGGTATTTCA
114835252 GTAATTTT
1 GTAATTTT
114835260 GCAAACCATG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCTACAAGGGTATTTCA
Found at i:114835272 original size:27 final size:27
Alignment explanation
Indices: 114835239--114835422 Score: 305
Period size: 27 Copynumber: 6.8 Consensus size: 27
114835229 TTTTACCCTA
*
114835239 CAGGGGTATTTTAGTAATTTTGCAAAC
1 CAGGGGTATTTTGGTAATTTTGCAAAC
*
114835266 CATGGGTATTTTGGTAATTTTGCAAAC
1 CAGGGGTATTTTGGTAATTTTGCAAAC
114835293 CAGGGGTATTTTGGTAATTTTGCAAAC
1 CAGGGGTATTTTGGTAATTTTGCAAAC
*
114835320 CAGGGGTGTTTTGGTAATTTTGCAAAC
1 CAGGGGTATTTTGGTAATTTTGCAAAC
* *
114835347 TAGGGATATTTTGGTAATTTTGCAAAC
1 CAGGGGTATTTTGGTAATTTTGCAAAC
* *
114835374 CAGGGGTATTTTGGTAGTTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTGCAAAC
114835401 CAGGGGTATTTTGGTAATTTTG
1 CAGGGGTATTTTGGTAATTTTG
114835423 TAAATCGAGG
Statistics
Matches: 144, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.39
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTGCAAAC
Found at i:114835337 original size:81 final size:81
Alignment explanation
Indices: 114835215--114835422 Score: 312
Period size: 81 Copynumber: 2.6 Consensus size: 81
114835205 TACCCTACAA
* ** *
114835215 GGGTATTTCGGTAATTTTACCCTA-CAGGGGTATTTTAGTAATTTTGCAAACCATGGG-TATTTT
1 GGGTATTTTGGTAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTGCAAACCA-GGGATATTTT
114835278 GGTAATTTTGCAAACCAG
64 GGTAATTTTGCAAACCAG
* * *
114835296 GGGTATTTTGGTAATTTTGCAAACCAGGGGTGTTTTGGTAATTTTGCAAACTAGGGATATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCAAACCAGGGATATTTTGG
114835361 TAATTTTGCAAACCAG
66 TAATTTTGCAAACCAG
*
114835377 GGGTATTTTGGTAGTTTTACAAACCAGGGGTATTTTGGTAATTTTG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTG
114835423 TAAATCGAGG
Statistics
Matches: 115, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
80 5 0.04
81 110 0.96
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.39
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCAAACCAGGGATATTTTGG
TAATTTTGCAAACCAG
Found at i:114835443 original size:27 final size:27
Alignment explanation
Indices: 114835413--114835591 Score: 229
Period size: 27 Copynumber: 6.6 Consensus size: 27
114835403 GGGGTATTTT
*
114835413 GGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* *
114835440 GGTAATTCTATAAATCGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* * *
114835467 AGTAATTCTATAAA-CTGAGGGTAAAAT
1 GGTAATTCTGTAAATC-GAGGGTAAAAC
*
114835494 GGTAATTCTGTAAATCGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAAC
114835521 GGTAATTCTGTAAAAT-GAGGGTAAAAC
1 GGTAATTCTGT-AAATCGAGGGTAAAAC
*
114835548 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 GGTAATTCTGTAAATC-GAGGGTAAAAC
*
114835575 GATAATTCTGTAAATCG
1 GGTAATTCTGTAAATCG
114835592 GGAGTACTTT
Statistics
Matches: 136, Mismatches: 10, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
26 4 0.03
27 126 0.93
28 6 0.04
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:114835444 original size:81 final size:81
Alignment explanation
Indices: 114835215--114835446 Score: 254
Period size: 81 Copynumber: 2.9 Consensus size: 81
114835205 TACCCTACAA
* ** * * ****
114835215 GGGTATTTCGGTAATTTTACCCTA-CAGGGGTATTTTAGTAATTTTGCAAACCATGGG-TATTTT
1 GGGTATTTTGGTAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTGCAAACGA-GGGATAAAAC
114835278 GGTAATTTTGCAAACCAG
64 GGTAATTTTGCAAACCAG
* * * ****
114835296 GGGTATTTTGGTAATTTTGCAAACCAGGGGTGTTTTGGTAATTTTGCAAACTAGGGATATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCAAACGAGGGATAAAACGG
114835361 TAATTTTGCAAACCAG
66 TAATTTTGCAAACCAG
* *
114835377 GGGTATTTTGGTAGTTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAATCGAGGG-TAAAACG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCAAA-CGAGGGATAAAACG
114835441 GTAATT
65 GTAATT
114835447 CTATAAATCG
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
80 5 0.04
81 122 0.92
82 5 0.04
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.38
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCAAACGAGGGATAAAACGG
TAATTTTGCAAACCAG
Found at i:114835462 original size:81 final size:81
Alignment explanation
Indices: 114835214--114835543 Score: 224
Period size: 81 Copynumber: 4.1 Consensus size: 81
114835204 CTACCCTACA
* ** * * * ***
114835214 AGGGTATTTCGGTAATTTTACCCTA-CAGGGGTATTTTAGTAATTTTGCAAA-CCATGGGTATTT
1 AGGGTATTTTGGTAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTGTAAATCGA-GGGTAAAA
* * *
114835277 TGGTAATTTTGCAAA-CC
64 TGGTAATTCTGTAAATCG
* * * * ***
114835294 AGGGGTATTTTGGTAATTTTGCAAACCAGGGGTGTTTTGGTAATTTTGCAAA-CTAGGGATATTT
1 A-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAATCGAGGG-TAAAA
* * *
114835358 TGGTAATTTTGCAAA-CC
64 TGGTAATTCTGTAAATCG
* *
114835375 AGGGGTATTTTGGTAGTTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAAC
1 A-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAAT
*
114835440 GGTAATTCTATAAATCG
65 GGTAATTCTGTAAATCG
*** * * * * *** *
114835457 AGGGTAAAATAGTAATTCTATAAA-CTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAT
1 AGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAAT
114835521 GGTAATTCTGTAAAAT-G
65 GGTAATTCTGT-AAATCG
114835538 AGGGTA
1 AGGGTA
114835544 AAACAGTAAT
Statistics
Matches: 209, Mismatches: 34, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
80 8 0.04
81 190 0.91
82 11 0.05
ACGTcount: A:0.31, C:0.09, G:0.25, T:0.35
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAATG
GTAATTCTGTAAATCG
Found at i:114835544 original size:81 final size:81
Alignment explanation
Indices: 114835412--114835591 Score: 281
Period size: 81 Copynumber: 2.2 Consensus size: 81
114835402 AGGGGTATTT
* *
114835412 TGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTA
1 TGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTA
114835477 TAAACTGAGGGTAAAA
66 TAAACTGAGGGTAAAA
* *
114835493 TGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAAAT-GAGGGTAAAACAGTAATTCT
1 TGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT-AAATCGAGGGTAAAACAGTAATTCT
*
114835557 GTAAACTGAGGGTAAAA
65 ATAAACTGAGGGTAAAA
* *
114835574 CGATAATTCTGTAAATCG
1 TGGTAATTCTGTAAATCG
114835592 GGAGTACTTT
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
81 87 0.96
82 4 0.04
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (81 bp):
TGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTA
TAAACTGAGGGTAAAA
Found at i:114835622 original size:81 final size:80
Alignment explanation
Indices: 114835415--114835622 Score: 258
Period size: 81 Copynumber: 2.6 Consensus size: 80
114835405 GGTATTTTGG
* * * *
114835415 TAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAA
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATTTTA-AAATCGAGGGTAAAACAGTAATTCTATAA
* *
114835480 ACTGAGGGTAAAATGG
65 ACTGAGGGTAAAACGA
*
114835496 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAAAT-GAGGGTAAAACAGTAATTCTGTA
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATT-T-TAAAATCGAGGGTAAAACAGTAATTCTATA
114835560 AACTGAGGGTAAAACGA
64 AACTGAGGGTAAAACGA
*** *
114835577 TAATTCTGTAAATCG-GGAGTACTTTGGTAATTTTACAAGTCGAGGG
1 TAATTCTGTAAATCGAGG-GTAAAATGGTAATTTTA-AAATCGAGGG
114835623 CATTTCAGTA
Statistics
Matches: 111, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
79 2 0.02
80 6 0.05
81 97 0.87
82 4 0.04
83 2 0.02
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.30
Consensus pattern (80 bp):
TAATTCTGTAAATCGAGGGTAAAATGGTAATTTTAAAATCGAGGGTAAAACAGTAATTCTATAAA
CTGAGGGTAAAACGA
Found at i:114837943 original size:22 final size:23
Alignment explanation
Indices: 114837918--114837966 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 23
114837908 AATTTTTTAA
*
114837918 TAATTCAA-TGAATTAAA-AAAAT
1 TAATT-AATTGAATAAAATAAAAT
114837940 TAATTAATTGAATAAAATTAAAAT
1 TAATTAATTGAATAAAA-TAAAAT
114837964 TAA
1 TAA
114837967 GAGAAAACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 2 0.09
22 13 0.57
24 8 0.35
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (23 bp):
TAATTAATTGAATAAAATAAAAT
Found at i:114838764 original size:10 final size:11
Alignment explanation
Indices: 114838736--114838763 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
114838726 TAATTATCAA
114838736 TTTTTTTCTTT
1 TTTTTTTCTTT
114838747 TTTTTTTCTTT
1 TTTTTTTCTTT
114838758 TTTTTT
1 TTTTTT
114838764 CAAACTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:114857624 original size:47 final size:46
Alignment explanation
Indices: 114857549--114857773 Score: 181
Period size: 47 Copynumber: 4.8 Consensus size: 46
114857539 TGAGTAAGAT
* *
114857549 GTCGATGCCATGTCTCAGACACGATCTTACACTGGCTCATATCTC-AA
1 GTCGATGCCATGTC-CAGACATG-TCTTACACTGGCTCACATCTCGAA
* *
114857596 GTCGATGCCATGTCCGAGACATGGTCTTACACTGACT-ACCATCTCGTA
1 GTCGATGCCATGTCC-AGACAT-GTCTTACACTGGCTCA-CATCTCGAA
* * * * * *
114857644 GCCGATG-CATGTCCTAGACATGTCTTACACTAGCTTACGTTTCGAG
1 GTCGATGCCATGTCC-AGACATGTCTTACACTGGCTCACATCTCGAA
* * * * *
114857690 GCCGATG-CATGTCCCAGACATGTCATACACTAGCTCTCGTCTC-AA
1 GTCGATGCCATGT-CCAGACATGTCTTACACTGGCTCACATCTCGAA
*
114857735 TGTCGATACCATGTCTCAGACATAGTCTTACACTGGCTC
1 -GTCGATGCCATGTC-CAGACAT-GTCTTACACTGGCTC
114857774 TCTTAATGTG
Statistics
Matches: 147, Mismatches: 21, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
45 1 0.01
46 61 0.41
47 64 0.44
48 21 0.14
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GTCGATGCCATGTCCAGACATGTCTTACACTGGCTCACATCTCGAA
Found at i:114857694 original size:46 final size:46
Alignment explanation
Indices: 114857644--114857817 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
114857634 CCATCTCGTA
*
114857644 GCCGATGCATGTCCTAGACATGTCTTACACTAGCT-TACGTTTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTTTCGAG
* * * *
114857690 GCCGATGCATGTCCCAGACATGTCATACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTTTCGAG
* * * * *
114857736 GTCGATACCATGTCTCAGACATAGTCTTACACTGGCTCTC-TTAAT-GTG
1 GCCGAT-GCATGTCCCAGACAT-GTCTTACACTAGCTCTCGTT--TCGAG
114857784 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
114857818 CAACAATAAC
Statistics
Matches: 105, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
46 56 0.53
47 28 0.27
48 20 0.19
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTTTCGAG
Found at i:114865834 original size:134 final size:133
Alignment explanation
Indices: 114865587--114865851 Score: 388
Period size: 134 Copynumber: 2.0 Consensus size: 133
114865577 CTTACACATC
* * * *
114865587 TTATTGATTATAATGAAAGCATCATCTTCTAATATCACATTTTGATGTCTCAAATCTACAGCAAT
1 TTATTCATTATAATGAAAGCATCATCTTCTAATATCACATTTTGATGACCCAAATATACAGCAAT
* *
114865652 CTTCAAAGCATGGAGACATGCAATGGTTTCAATCCGCATACGAGTAGAGAACAAAAAGAAGAAAA
66 CTTCAAAGCATGGAGACATGCAATGCTTTCAATCCGCATACGACTAGAGAACAAAAA-AAGAAAA
114865717 GTTT
130 GTTT
* * *
114865721 TTATTCATTATAATGAAAGCATCTTCTTCTAATATGACATTTTGATGACCCAAATATACTGCAAT
1 TTATTCATTATAATGAAAGCATCATCTTCTAATATCACATTTTGATGACCCAAATATACAGCAAT
* * * *
114865786 CTTCAAAGTATGGAGATATGCAATGCTTTCAATCAC-CATATGACTAGAGAACTAAAAAAGAAAA
66 CTTCAAAGCATGGAGACATGCAATGCTTTCAATC-CGCATACGACTAGAGAACAAAAAAAGAAAA
114865850 GT
130 GT
114865852 CATGTTGAGA
Statistics
Matches: 117, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
133 9 0.08
134 107 0.91
135 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.30
Consensus pattern (133 bp):
TTATTCATTATAATGAAAGCATCATCTTCTAATATCACATTTTGATGACCCAAATATACAGCAAT
CTTCAAAGCATGGAGACATGCAATGCTTTCAATCCGCATACGACTAGAGAACAAAAAAAGAAAAG
TTT
Found at i:114873198 original size:33 final size:35
Alignment explanation
Indices: 114873130--114873206 Score: 81
Period size: 33 Copynumber: 2.3 Consensus size: 35
114873120 ATTATATATT
* **
114873130 TGTTATATATATATATATTTATTTTGTTTTTTATA
1 TGTTATATATATATATATCTATTTTGTTTACTATA
114873165 TGTTATATAT-TATATA-CTATTTATG-TTACTATA
1 TGTTATATATATATATATCTATTT-TGTTTACTATA
*
114873198 T-TTTTATAT
1 TGTTATATAT
114873207 GTAGAATACT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
32 7 0.19
33 12 0.32
34 8 0.22
35 10 0.27
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (35 bp):
TGTTATATATATATATATCTATTTTGTTTACTATA
Found at i:114876856 original size:14 final size:14
Alignment explanation
Indices: 114876837--114876863 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
114876827 AAGATATTCT
114876837 TTTTTCTAAATAAA
1 TTTTTCTAAATAAA
114876851 TTTTTCTAAATAA
1 TTTTTCTAAATAA
114876864 GATTGAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTTTCTAAATAAA
Found at i:114886655 original size:41 final size:41
Alignment explanation
Indices: 114886610--114886727 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
114886600 TGAAAGATAA
114886610 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
114886651 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
114886681 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
114886722 ATGTAG
1 ATGTAG
114886728 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:114886666 original size:71 final size:71
Alignment explanation
Indices: 114886578--114886740 Score: 326
Period size: 71 Copynumber: 2.3 Consensus size: 71
114886568 GAGATGTATC
114886578 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
114886643 AGGACA
66 AGGACA
114886649 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
114886714 AGGACA
66 AGGACA
114886720 CCATGTAGACAAGAGAGCTAC
1 CCATGTAGACAAGAGAGCTAC
114886741 AAGACAAATC
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:114888438 original size:220 final size:220
Alignment explanation
Indices: 114888054--114888812 Score: 1248
Period size: 220 Copynumber: 3.5 Consensus size: 220
114888044 GGGGTGTTAC
* * *
114888054 AGCAGATCTGACCTTTAGATGTTTACACTGAAGCAGATCCAAGGTGATTTAGCATCTCTGTATTA
1 AGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTAGCATCTCTGTATTG
114888119 TCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGACGGAGAGTAGATCAAAGACA
66 TCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGACGGAGAGTAGATCAAAGACA
114888184 TGGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCATCTTTGTG
131 TGGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCATCTTTGTG
* *
114888249 TTTATAAGGAACAAATCAAAGCCAT
196 TTTACAAGGAACAAATCAAAGGCAT
* * * *
114888274 AACAGATCTGACCTTCAGATGTTTACACTGAAGCAAATTCAAGATGATTTGGCATCTCTGTATTG
1 AGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTAGCATCTCTGTATTG
* * * **
114888339 TCAGAGAACAAATTGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGAGTAGATTGAAGACA
66 TCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGACGGAGAGTAGATCAAAGACA
* * *
114888404 TAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGTGGATCCAAGATGATTTGGCCTCTTTGTG
131 TGGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCATCTTTGTG
**
114888469 TTTACAAGGAACAAATTGAAGGCAT
196 TTTACAAGGAACAAATCAAAGGCAT
* * *
114888494 AGCAGATCTGACCTTTAGATGTTTACACTGAAGTAGATCCAAGATGATTTAACATCTCTGTATTG
1 AGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTAGCATCTCTGTATTG
* * *
114888559 CCAGAGAACAAATCGAAGAAACAAAATTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACA
66 TCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGACGGAGAGTAGATCAAAGACA
114888624 TGGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCATCTTTGTG
131 TGGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCATCTTTGTG
114888689 TTTACAAGGAACAAATCAAAGGCAT
196 TTTACAAGGAACAAATCAAAGGCAT
* *
114888714 AGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTT
1 AGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTAGCATCTCTGTATTG
* * *
114888779 TCAGAGAACAAATCAAAGAAATAGATTTGGCATC
66 TCAGAGAACAAATCGAAGAAACAAATTTGGCATC
114888813 CTCGTGTTTA
Statistics
Matches: 490, Mismatches: 49, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
220 490 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (220 bp):
AGCAGATCTGACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTAGCATCTCTGTATTG
TCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGACGGAGAGTAGATCAAAGACA
TGGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGGCATCTTTGTG
TTTACAAGGAACAAATCAAAGGCAT
Found at i:114888788 original size:87 final size:89
Alignment explanation
Indices: 114888614--114888802 Score: 240
Period size: 87 Copynumber: 2.1 Consensus size: 89
114888604 CGGAGAGCAG
* ** * *
114888614 ATCAAAGACATGGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCGGATCCAAGATGATTTGG
1 ATCAAAGACATAGCAGATCTAACCTTCAGATGTTTACACATCAAAGCAGATCCAAGATGATTTGG
* *
114888679 CATCTTTGTGTTTACAAGGAACAA
66 CATCTCTGTATTTACAAGGAACAA
* * *
114888703 ATCAAAGGCATAGCAGATCTGACCTTCAGATGTTTACAC-T-GAAGCAGATCCAAGATGATTTGG
1 ATCAAAGACATAGCAGATCTAACCTTCAGATGTTTACACATCAAAGCAGATCCAAGATGATTTGG
*
114888766 CATCTCTGTATTTTC-AGAGAACAA
66 CATCTCTGTATTTACAAG-GAACAA
*
114888790 ATCAAAGAAATAG
1 ATCAAAGACATAG
114888803 ATTTGGCATC
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
86 2 0.02
87 50 0.58
88 1 0.01
89 33 0.38
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (89 bp):
ATCAAAGACATAGCAGATCTAACCTTCAGATGTTTACACATCAAAGCAGATCCAAGATGATTTGG
CATCTCTGTATTTACAAGGAACAA
Found at i:114888882 original size:130 final size:131
Alignment explanation
Indices: 114888672--114888922 Score: 396
Period size: 130 Copynumber: 1.9 Consensus size: 131
114888662 GATCCAAGAT
* * *
114888672 GATTTGGCATCTTTGTGTTTACAAGGAACAAATCAAAGGCATAGCAGATCTGACCTTCAGATGTT
1 GATTTGGCATCCTCGTGTTTACAAGGAACAAATCAAAGGCATAGCAGATCTAACCTTCAGATGTT
*
114888737 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTT-TCAGAGAACAAATCAAAGAAAT
66 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTATATTTGTCAGAGAACAAATCAAAGAAAT
114888801 A
131 A
* *
114888802 GATTTGGCATCCTCGTGTTTACAAGGAGCAAATCGAAGGCATAGCAGATCTAACCTTCAGATGTT
1 GATTTGGCATCCTCGTGTTTACAAGGAACAAATCAAAGGCATAGCAGATCTAACCTTCAGATGTT
** * * *
114888867 TACGTTGAAGTAGATCCAAGATGATTTGGCATTTCTATATTTGTCAGGGAACAAAT
66 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTATATTTGTCAGAGAACAAAT
114888923 TGAAGAAGCA
Statistics
Matches: 109, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
130 97 0.89
131 12 0.11
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (131 bp):
GATTTGGCATCCTCGTGTTTACAAGGAACAAATCAAAGGCATAGCAGATCTAACCTTCAGATGTT
TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTATATTTGTCAGAGAACAAATCAAAGAAAT
A
Found at i:114890707 original size:16 final size:15
Alignment explanation
Indices: 114890676--114890710 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
114890666 ATTTTTTAAA
*
114890676 ATTTTTTTATTATAT
1 ATTTTGTTATTATAT
114890691 ATTTTGTTATATATAT
1 ATTTTGTTAT-TATAT
114890707 ATTT
1 ATTT
114890711 ATTCTATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (15 bp):
ATTTTGTTATTATAT
Found at i:114902939 original size:17 final size:17
Alignment explanation
Indices: 114902917--114902978 Score: 67
Period size: 17 Copynumber: 3.8 Consensus size: 17
114902907 AAGTTAAAGG
114902917 AATGAAAATAAATAAAT
1 AATGAAAATAAATAAAT
*
114902934 AATGAAAAGAAA-AAAT
1 AATGAAAATAAATAAAT
* *
114902950 AAAGAAAA-AAATAAACA
1 AATGAAAATAAATAAA-T
114902967 AATG-AAATAAAT
1 AATGAAAATAAAT
114902979 CGATAAACCA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
15 3 0.08
16 17 0.45
17 18 0.47
ACGTcount: A:0.74, C:0.02, G:0.08, T:0.16
Consensus pattern (17 bp):
AATGAAAATAAATAAAT
Found at i:114902951 original size:16 final size:17
Alignment explanation
Indices: 114902917--114902964 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 17
114902907 AAGTTAAAGG
*
114902917 AATGAAAATAAATAAAT
1 AATGAAAAGAAATAAAT
114902934 AATGAAAAGAAA-AAAT
1 AATGAAAAGAAATAAAT
*
114902950 AAAGAAAA-AAATAAA
1 AATGAAAAGAAATAAA
114902965 CAAATGAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 3 0.11
16 14 0.50
17 11 0.39
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (17 bp):
AATGAAAAGAAATAAAT
Found at i:114910095 original size:71 final size:71
Alignment explanation
Indices: 114910009--114910172 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
114909999 CGATTTGTCT
114910009 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
114910074 CTTTCA
66 CTTTCA
114910080 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
114910145 CTTTCA
66 CTTTCA
114910151 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
114910173 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:114910210 original size:71 final size:70
Alignment explanation
Indices: 114910009--114910206 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
114909999 CGATTTGTCT
* * * *
114910009 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
114910074 CTTTCA
65 CTTTCA
* * * *
114910080 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
114910145 CTTTCA
65 CTTTCA
* *
114910151 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
114910207 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:114917671 original size:71 final size:71
Alignment explanation
Indices: 114917587--114917750 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
114917577 CGATTTGTCT
114917587 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
114917652 CTTTCA
66 CTTTCA
114917658 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
114917723 CTTTCA
66 CTTTCA
114917729 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
114917751 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Done.