Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 366 of 433
Found at i:114917788 original size:71 final size:70
Alignment explanation
Indices: 114917587--114917784 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
114917577 CGATTTGTCT
* * * *
114917587 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
114917652 CTTTCA
65 CTTTCA
* * * *
114917658 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
114917723 CTTTCA
65 CTTTCA
* *
114917729 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
114917785 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:114927308 original size:21 final size:21
Alignment explanation
Indices: 114927282--114927324 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
114927272 AGCAATGACA
114927282 TTAGCTTTTCTT-AGGTGATAG
1 TTAGCTTTTCTTGA-GTGATAG
114927303 TTAGCTTTTCTTGAGTGATAG
1 TTAGCTTTTCTTGAGTGATAG
114927324 T
1 T
114927325 CAATGAGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.19, C:0.09, G:0.23, T:0.49
Consensus pattern (21 bp):
TTAGCTTTTCTTGAGTGATAG
Found at i:114933008 original size:20 final size:19
Alignment explanation
Indices: 114932969--114933008 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
114932959 ATATTTAAAT
* *
114932969 AAATGTATTTTATTTTACC
1 AAATGTATTTCATATTACC
114932988 AAATGTATTTCACTATTACC
1 AAATGTATTTCA-TATTACC
114933008 A
1 A
114933009 CACACTTGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.35, C:0.15, G:0.05, T:0.45
Consensus pattern (19 bp):
AAATGTATTTCATATTACC
Found at i:114933390 original size:48 final size:48
Alignment explanation
Indices: 114933319--114933414 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
114933309 ATATCAAAGA
114933319 TAGAAAATGTACCAGTGATTACACTAGGTGTTGAAGCTTCCTCTCGAG
1 TAGAAAATGTACCAGTGATTACACTAGGTGTTGAAGCTTCCTCTCGAG
114933367 TAGAAAATGTACCAGTGATTACACTAGGTGTTGAAGCTTCCTCTCGAG
1 TAGAAAATGTACCAGTGATTACACTAGGTGTTGAAGCTTCCTCTCGAG
114933415 CCTGAATTGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (48 bp):
TAGAAAATGTACCAGTGATTACACTAGGTGTTGAAGCTTCCTCTCGAG
Found at i:114934719 original size:10 final size:10
Alignment explanation
Indices: 114934704--114934750 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
114934694 TAACATTTTG
114934704 AATTTTAATT
1 AATTTTAATT
*
114934714 AATTTTATATCA
1 AATTTTA-AT-T
*
114934726 AATTTTGATT
1 AATTTTAATT
114934736 AATTTTAATT
1 AATTTTAATT
114934746 -ATTTT
1 AATTTT
114934751 CGACAAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
9 5 0.16
10 16 0.52
11 4 0.13
12 6 0.19
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (10 bp):
AATTTTAATT
Found at i:114935976 original size:32 final size:32
Alignment explanation
Indices: 114935939--114936003 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
114935929 AATGCTTATC
*
114935939 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTAGTAAAATGCTA
114935971 ATGCCCATCATCCATTAACTAGTAAAATGCTA
1 ATGCCCATCATCCATTAACTAGTAAAATGCTA
114936003 A
1 A
114936004 AATGCATACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.29
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTAGTAAAATGCTA
Found at i:114938911 original size:22 final size:21
Alignment explanation
Indices: 114938881--114938927 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
114938871 TACAAATTAA
114938881 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
114938903 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
114938924 ATCT
1 ATCT
114938928 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:114938933 original size:19 final size:19
Alignment explanation
Indices: 114938898--114938976 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
114938888 AGATTACAAG
114938898 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
114938919 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
114938936 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
114938955 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
114938974 ATC
1 ATC
114938977 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:114938953 original size:36 final size:38
Alignment explanation
Indices: 114938898--114938970 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 38
114938888 AGATTACAAG
114938898 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
114938936 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
114938971 CATATCCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 26 0.74
37 1 0.03
38 8 0.23
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:114938985 original size:36 final size:35
Alignment explanation
Indices: 114938899--114938986 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 35
114938889 GATTACAAGA
114938899 TCATATCTTCAAGATTGCATATCATATCTAAGATTG
1 TCATATCTT-AAGATTGCATATCATATCTAAGATTG
114938935 TATCATATC-TAAGATTGCATATCATATCTAAGATTG
1 --TCATATCTTAAGATTGCATATCATATCTAAGATTG
114938971 -CATATCCTTAAAGATT
1 TCATAT-CTT-AAGATT
114938987 ATATTTCCAT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
33 5 0.11
34 1 0.02
35 1 0.02
36 32 0.68
37 1 0.02
38 7 0.15
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (35 bp):
TCATATCTTAAGATTGCATATCATATCTAAGATTG
Found at i:114940790 original size:39 final size:40
Alignment explanation
Indices: 114940694--114940905 Score: 214
Period size: 40 Copynumber: 5.3 Consensus size: 40
114940684 GCTCGATTGT
* * * * *
114940694 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGC
* * *
114940734 CTTCGGGAATTAGCCCGGATTTAGTAACT-GCACGAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* * * *
114940773 CTTCGGGACTTAACCCGGTTTTGGTAAATCACACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
*
114940813 CTTCGGGACTTAACCC-GATTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGA-TTTAGTAACTCGCACAAATGC
* * * * *
114940853 CTTCGGGAGTTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGC
114940894 CTTCGGGACTTA
1 CTTCGGGACTTA
114940906 GCCTGGATAC
Statistics
Matches: 143, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
39 33 0.23
40 86 0.60
41 24 0.17
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:114940792 original size:79 final size:79
Alignment explanation
Indices: 114940694--114940913 Score: 228
Period size: 79 Copynumber: 2.7 Consensus size: 79
114940684 GCTCGATTGT
* * * * *
114940694 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGT
1 CTTCGGGACTTAACCCGGTT-TAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGT
*
114940759 AACT-GCACGAATGC
65 AACTCGCACAAATGC
* * * * *
114940773 CTTCGGGACTTAACCCGGTTTTGGTAAATCACACAAATGCCTTCGGGACTTAACCC-GATTTTGG
1 CTTCGGGACTTAACCCGG-TTTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGA-TTTAG
114940837 TAACTCGCACAAATGC
64 TAACTCGCACAAATGC
* * * * * *
114940853 CTTCGGGAGTTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCTGGAT
1 CTTCGGGACTTAACCCGG-TTTAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
114940914 ACCATTCGAA
Statistics
Matches: 114, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
78 2 0.02
79 53 0.46
80 32 0.28
81 25 0.22
82 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (79 bp):
CTTCGGGACTTAACCCGGTTTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
ACTCGCACAAATGC
Found at i:114944066 original size:28 final size:26
Alignment explanation
Indices: 114944004--114944077 Score: 85
Period size: 28 Copynumber: 2.8 Consensus size: 26
114943994 AAATTAACCC
** * *
114944004 TAGGGGTATAACGGTAATTTTGCACT
1 TAGGGGTATAATAGTAATTTTCCACA
114944030 TAGGGGTATAATAGTAATTTTCCATACA
1 TAGGGGTATAATAGTAATTTTCC--ACA
*
114944058 TAGGGGTATTATAGTAATTT
1 TAGGGGTATAATAGTAATTT
114944078 AGCTACTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
26 20 0.49
28 21 0.51
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (26 bp):
TAGGGGTATAATAGTAATTTTCCACA
Found at i:114945555 original size:26 final size:26
Alignment explanation
Indices: 114945519--114945599 Score: 123
Period size: 26 Copynumber: 3.2 Consensus size: 26
114945509 CATGAAATTC
114945519 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
114945545 TTATCATGAAACATTTACCTAACCC-
1 TTATCATGAAACATTTACCTAACCCA
* *
114945570 --ATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
114945594 TTATCA
1 TTATCA
114945600 ATTTGTATCA
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
23 21 0.42
26 29 0.58
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:114950985 original size:20 final size:19
Alignment explanation
Indices: 114950960--114951004 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
114950950 TGATTCTAAC
*
114950960 TAATTTTGAATAATTTCATT
1 TAATTTTCAAT-ATTTCATT
* *
114950980 TAATTTTCAATTTTTCTTT
1 TAATTTTCAATATTTCATT
114950999 TAATTT
1 TAATTT
114951005 GAACTTAGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62
Consensus pattern (19 bp):
TAATTTTCAATATTTCATT
Found at i:114953517 original size:73 final size:73
Alignment explanation
Indices: 114953400--114953540 Score: 264
Period size: 73 Copynumber: 1.9 Consensus size: 73
114953390 GTTTATTTCA
*
114953400 ATTGAGATTGAGATTATGAATAACATAAGTGGCTAACTCCCTTAGGGGGTATTAACGAATGGATG
1 ATTGAGATTGAGATTATGAATAACATAAGTGGCTAACTCCCTTAGGGGATATTAACGAATGGATG
114953465 GGATTGAG
66 GGATTGAG
*
114953473 ATTGAGATTGAGATTATGAATAACATAAGTGGCTAACTCTCTTAGGGGATATTAACGAATGGATG
1 ATTGAGATTGAGATTATGAATAACATAAGTGGCTAACTCCCTTAGGGGATATTAACGAATGGATG
114953538 GGA
66 GGA
114953541 ACGTGATTAA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 66 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (73 bp):
ATTGAGATTGAGATTATGAATAACATAAGTGGCTAACTCCCTTAGGGGATATTAACGAATGGATG
GGATTGAG
Found at i:114955426 original size:21 final size:21
Alignment explanation
Indices: 114955400--114955460 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
114955390 CGACAGATAA
114955400 GTGCCTAAAACGACACACAAG
1 GTGCCTAAAACGACACACAAG
* * **
114955421 GTGCCTGATACGACACATGAG
1 GTGCCTAAAACGACACACAAG
114955442 GTGCCTAAAATACGACACA
1 GTGCCT-AAA-ACGACACA
114955461 TAAAGTGTCT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 23 0.72
22 1 0.03
23 8 0.25
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.15
Consensus pattern (21 bp):
GTGCCTAAAACGACACACAAG
Found at i:114955473 original size:44 final size:41
Alignment explanation
Indices: 114955387--114955493 Score: 106
Period size: 46 Copynumber: 2.5 Consensus size: 41
114955377 CCTGAGCAGT
* *
114955387 ATACGACAGATAAGTGCCTAAAACGACACACAAGGTGCCTG
1 ATACGACACATAAGTGCCTAAAACGACACACAAAGTGCCTG
* * *
114955428 ATACGACACATGAGGTGCCTAAAATACGACACATAAAGTGTCTG
1 ATACGACACAT-AAGTGCCT-AAA-ACGACACACAAAGTGCCTG
*
114955472 ATATATGACACATAAAGTGCCT
1 --ATACGACACAT-AAGTGCCT
114955494 GATCGGCAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
41 10 0.19
42 7 0.13
43 3 0.06
44 16 0.30
46 17 0.32
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.20
Consensus pattern (41 bp):
ATACGACACATAAGTGCCTAAAACGACACACAAAGTGCCTG
Found at i:114955949 original size:75 final size:76
Alignment explanation
Indices: 114955870--114956041 Score: 174
Period size: 78 Copynumber: 2.3 Consensus size: 76
114955860 GTATTTAATT
*
114955870 CATA-TTT-TTAATTC-ATT-TTCCAATCAAATTCAAATCACTAATTACTTTTCAATCAATATAC
1 CATATTTTCTTAATTCAATTATTCCAATC-AATTCAAATCACT-ATTACTTTCCAATCAATATAC
114955931 ATTTCAAATACTCA
64 -TTTCAAATACTCA
* ** * * *
114955945 CATATTTTCTTCATTCAATTCAATTTGATTCAATTCAAATCACTTTTAGTTTCCAATCAATATAC
1 CATATTTTCTTAATTCAATT--ATTCCAATCAATTCAAATCACTATTACTTTCCAATCAATATAC
*
114956010 TTTCAAATATTCA
64 TTTCAAATACTCA
* *
114956023 CATA-ATTCATAATTCAATT
1 CATATTTTCTTAATTCAATT
114956042 CACTTTTAAT
Statistics
Matches: 80, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
75 4 0.05
76 3 0.04
77 18 0.22
78 19 0.24
79 18 0.22
80 13 0.16
81 5 0.06
ACGTcount: A:0.37, C:0.19, G:0.01, T:0.43
Consensus pattern (76 bp):
CATATTTTCTTAATTCAATTATTCCAATCAATTCAAATCACTATTACTTTCCAATCAATATACTT
TCAAATACTCA
Found at i:114956392 original size:17 final size:17
Alignment explanation
Indices: 114956358--114956395 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
114956348 ACTGAATTTC
114956358 AATTCAATTTATACCCT
1 AATTCAATTTATACCCT
*
114956375 AATTCCAATTTA-ATCCT
1 AATT-CAATTTATACCCT
114956392 AATT
1 AATT
114956396 AACTCATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.37, C:0.21, G:0.00, T:0.42
Consensus pattern (17 bp):
AATTCAATTTATACCCT
Found at i:114956873 original size:2 final size:2
Alignment explanation
Indices: 114956866--114956897 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
114956856 TTTTATATCT
114956866 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
114956898 AATAGTTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:114956918 original size:9 final size:9
Alignment explanation
Indices: 114956904--114956928 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
114956894 TATAAATAGT
114956904 TAATAATGA
1 TAATAATGA
114956913 TAATAATGA
1 TAATAATGA
114956922 TAATAAT
1 TAATAAT
114956929 AATTATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (9 bp):
TAATAATGA
Found at i:114965282 original size:12 final size:13
Alignment explanation
Indices: 114965258--114965288 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
114965248 TACAAATGTA
114965258 TCATTTCCCATTT
1 TCATTTCCCATTT
114965271 TCATTT-CCATTT
1 TCATTTCCCATTT
114965283 TCATTT
1 TCATTT
114965289 TAAGAAACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 12 0.67
13 6 0.33
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.58
Consensus pattern (13 bp):
TCATTTCCCATTT
Found at i:114967211 original size:18 final size:20
Alignment explanation
Indices: 114967176--114967214 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
114967166 ATAAATTATA
114967176 ATTAAATATAGATTATATATT
1 ATTAAATATAGA-TATATATT
114967197 ATTAAAT-TAGA-ATATATT
1 ATTAAATATAGATATATATT
114967215 TAAATGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
20 4 0.22
21 7 0.39
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (20 bp):
ATTAAATATAGATATATATT
Found at i:114970490 original size:2 final size:2
Alignment explanation
Indices: 114970485--114970526 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
114970475 ACACACACAC
* *
114970485 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
114970527 TACCAAAGCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (2 bp):
AT
Found at i:114973011 original size:33 final size:33
Alignment explanation
Indices: 114972973--114973073 Score: 193
Period size: 33 Copynumber: 3.1 Consensus size: 33
114972963 TTCACTACAG
*
114972973 ATAGAGATACCTACGATCTATTTCTCTTACTTC
1 ATAGAGATACATACGATCTATTTCTCTTACTTC
114973006 ATAGAGATACATACGATCTATTTCTCTTACTTC
1 ATAGAGATACATACGATCTATTTCTCTTACTTC
114973039 ATAGAGATACATACGATCTATTTCTCTTACTTC
1 ATAGAGATACATACGATCTATTTCTCTTACTTC
114973072 AT
1 AT
114973074 TGTTTTCATT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
33 67 1.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.40
Consensus pattern (33 bp):
ATAGAGATACATACGATCTATTTCTCTTACTTC
Found at i:114976044 original size:26 final size:25
Alignment explanation
Indices: 114976022--114976126 Score: 80
Period size: 23 Copynumber: 4.3 Consensus size: 25
114976012 TTCATGATCG
114976022 GTAAGCTCCTACTGAGCTGATGAACA
1 GTAAGCT-CTACTGAGCTGATGAACA
*
114976048 GTAAGCTCTATTGAGCTGA--AACA
1 GTAAGCTCTACTGAGCTGATGAACA
* * **
114976071 ATAAACTCTAAAGAGC---TGAACA
1 GTAAGCTCTACTGAGCTGATGAACA
114976093 GTAAGCTCTTAC-GAGCTGAT-ATATCA
1 GTAAGCTC-TACTGAGCTGATGA-A-CA
114976119 GTAAGCTC
1 GTAAGCTC
114976127 ATACAAGCTT
Statistics
Matches: 63, Mismatches: 8, Indels: 16
0.72 0.09 0.18
Matches are distributed among these distances:
22 14 0.22
23 18 0.29
24 1 0.02
25 13 0.21
26 17 0.27
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (25 bp):
GTAAGCTCTACTGAGCTGATGAACA
Found at i:114976101 original size:22 final size:22
Alignment explanation
Indices: 114976042--114976111 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
114976032 ACTGAGCTGA
**
114976042 TGAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTAAAGAGC
* *
114976064 TGAAACAATAAACTCTAAAGAGC
1 TG-AACAGTAAGCTCTAAAGAGC
* *
114976087 TGAACAGTAAGCTCTTACGAGC
1 TGAACAGTAAGCTCTAAAGAGC
114976109 TGA
1 TGA
114976112 TATATCAGTA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 21 0.54
23 18 0.46
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.23
Consensus pattern (22 bp):
TGAACAGTAAGCTCTAAAGAGC
Found at i:114978156 original size:40 final size:40
Alignment explanation
Indices: 114978100--114978175 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
114978090 TGCACAATGC
* * *
114978100 ACCAAATGGTCGCAACATCTTATTCATCATTAAACTATGT
1 ACCAAATGGTCACAACATCTCATACATCATTAAACTATGT
114978140 ACCAAATGGTCACAACATCTCATACATCATTAAACT
1 ACCAAATGGTCACAACATCTCATACATCATTAAACT
114978176 CCAAAAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.29
Consensus pattern (40 bp):
ACCAAATGGTCACAACATCTCATACATCATTAAACTATGT
Found at i:114978682 original size:16 final size:16
Alignment explanation
Indices: 114978618--114978676 Score: 52
Period size: 16 Copynumber: 3.6 Consensus size: 16
114978608 ATACATTTTG
114978618 AAATTAT-AAAAA--A
1 AAATTATAAAAAATTA
114978631 AAATTATAACAAAATCATTA
1 AAATTAT-A-AAAA--ATTA
114978651 AAATTATAAAAAATTA
1 AAATTATAAAAAATTA
114978667 AAATTTATAA
1 AAA-TTATAA
114978677 GAATTATTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 7 0.18
16 11 0.29
17 6 0.16
18 5 0.13
19 1 0.03
20 8 0.21
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATTATAAAAAATTA
Found at i:114978698 original size:11 final size:10
Alignment explanation
Indices: 114978629--114978700 Score: 55
Period size: 9 Copynumber: 7.5 Consensus size: 10
114978619 AATTATAAAA
*
114978629 AAAAATTATA
1 AAAAATTATT
*
114978639 ACAAAATCATT
1 A-AAAATTATT
114978650 -AAAATTA-T
1 AAAAATTATT
114978658 AAAAA--ATT
1 AAAAATTATT
*
114978666 AAAATTTA-T
1 AAAAATTATT
*
114978675 AAGAATTATT
1 AAAAATTATT
114978685 AAAAATTAATT
1 AAAAATT-ATT
114978696 AAAAA
1 AAAAA
114978701 GCATAGAATT
Statistics
Matches: 48, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
7 1 0.02
8 6 0.12
9 17 0.35
10 9 0.19
11 15 0.31
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (10 bp):
AAAAATTATT
Found at i:114978916 original size:17 final size:17
Alignment explanation
Indices: 114978878--114978918 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
114978868 CAAAATGAAG
*
114978878 AAATAATTTTTTTAAAA
1 AAATTATTTTTTTAAAA
*
114978895 AAATTATTTTTTTATAA
1 AAATTATTTTTTTAAAA
114978912 AAATTAT
1 AAATTAT
114978919 GGTTTCTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
AAATTATTTTTTTAAAA
Found at i:114982057 original size:50 final size:50
Alignment explanation
Indices: 114981978--114982372 Score: 357
Period size: 50 Copynumber: 7.9 Consensus size: 50
114981968 TCCGTTGTGA
*
114981978 GTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * ** * *
114982028 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATA-CATG-TTAACTTCG
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-GATTGA--TAG
* * * * * * *
114982079 ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGAATCAGATGGTTAA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* *
114982129 GTCATGTGTGTCGTACTAAGTGCAGGCTACTACGTGT-CCTAGATTGATAG
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-AGATTGATAG
* * * * * * * *
114982179 GCCGCATGTGTAGTACTAAGTGCAGGCTATTATGTGTACC-CATTAACTTTG
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* * * * * *
114982230 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * *
114982280 GTCATGTGTGTAGTACTAAGTGCAGGATACTATGTGTACCAGATTGATAG
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
** * * *
114982330 GTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
114982373 GAGCTTCGGT
Statistics
Matches: 266, Mismatches: 69, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
49 10 0.04
50 182 0.68
51 69 0.26
52 5 0.02
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:114982251 original size:151 final size:151
Alignment explanation
Indices: 114981977--114982369 Score: 635
Period size: 151 Copynumber: 2.6 Consensus size: 151
114981967 ATCCGTTGTG
114981977 AGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* ***
114982042 ACTAAGTGCAGGCTACTATGCATACATGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGCT
66 ACTAAGTGCAGGCTACTATGCGTACCCATTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGCT
*
114982107 ACTACGTGAATCAGATGGTTA
131 ACTACATGAATCAGATGGTTA
* *
114982128 AGTCATGTGTGTCGTACTAAGTGCAGGCTACTACGTGT-CCTAGATTGATAGGCCGCATGTGTAG
1 AGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-AGATTGATAGGTCGCATGTGTAG
* * * *
114982192 TACTAAGTGCAGGCTATTATGTGTACCCATTAACTTTGATCACGTGTGTAGTACTAAGTGCAGGC
65 TACTAAGTGCAGGCTACTATGCGTACCCATTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGC
*
114982257 TACTACATGTATCAGATGGTTA
130 TACTACATGAATCAGATGGTTA
* * *
114982279 AGTCATGTGTGTAGTACTAAGTGCAGGATACTATGTGTACCAGATTGATAGGTTGCATGTGTAGT
1 AGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
114982344 ACTAAGTGCAGGCTACTATGCGTACC
66 ACTAAGTGCAGGCTACTATGCGTACC
114982370 AGAGAGCTTC
Statistics
Matches: 221, Mismatches: 19, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
150 2 0.01
151 217 0.98
152 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (151 bp):
AGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCCATTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGCT
ACTACATGAATCAGATGGTTA
Found at i:114982593 original size:16 final size:16
Alignment explanation
Indices: 114982572--114982603 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
114982562 AGAATGGAGT
114982572 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
114982588 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
114982604 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:114983233 original size:180 final size:180
Alignment explanation
Indices: 114982931--114983257 Score: 503
Period size: 180 Copynumber: 1.8 Consensus size: 180
114982921 TCTGAGAGCT
* * * * * **
114982931 GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCGGAACTGTCAGATAGTGAAATAGTGGTA
1 GTACCATGAGATAAATAATTTTTACTGAAGAGAGGTCAGAACTATCAGACAGTGAAACAAAGGTA
* * *
114982996 TCTTTAATGAATAAACTATATTAATTTGCTAAACCAAAAATTCTGAAAATTTTATGGTAATAATA
66 TCTTTAATGAATAAACTATATTAATTGGCTAAACCAAAAATTCTAAAAATTTTATGGTAAGAATA
* *
114983061 TATGTGATTCTAGTTTTTTGGAAAATTATTAGTTCTCAATTTAGAGTCCC
131 TATATGATTATAGTTTTTTGGAAAATTATTAGTTCTCAATTTAGAGTCCC
114983111 GTACCATGAGATAAATAATTTTTACTGAAGAGAGGTCAGAACTATCAGACAGTGAAACAAAGGTA
1 GTACCATGAGATAAATAATTTTTACTGAAGAGAGGTCAGAACTATCAGACAGTGAAACAAAGGTA
* * *
114983176 TCTTTAATGAATAAATTGTACTT-ATTGGCTAGACCAAAAATTCTAAAAATTTTATGGTAAGAAT
66 TCTTTAATGAATAAACTATA-TTAATTGGCTAAACCAAAAATTCTAAAAATTTTATGGTAAGAAT
114983240 ATATATGATTATAGTTTT
130 ATATATGATTATAGTTTT
114983258 ATATAAAATT
Statistics
Matches: 131, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
180 129 0.98
181 2 0.02
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (180 bp):
GTACCATGAGATAAATAATTTTTACTGAAGAGAGGTCAGAACTATCAGACAGTGAAACAAAGGTA
TCTTTAATGAATAAACTATATTAATTGGCTAAACCAAAAATTCTAAAAATTTTATGGTAAGAATA
TATATGATTATAGTTTTTTGGAAAATTATTAGTTCTCAATTTAGAGTCCC
Found at i:114987411 original size:42 final size:41
Alignment explanation
Indices: 114987249--114987401 Score: 184
Period size: 41 Copynumber: 3.7 Consensus size: 41
114987239 TACCATACCA
* * * *
114987249 ATGCCATATCCCAAATATGGTCTTACATG-GGATCTCGTAATG
1 ATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCAT-ATG
* *
114987291 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATAT-G
*
114987334 AT-CCATATCCCAGATATGGTCTTACACGAAGTCTTATACTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATA-TG
114987375 ATGCCATATCCCAGATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
114987402 GGTAGTCTTA
Statistics
Matches: 97, Mismatches: 9, Indels: 10
0.84 0.08 0.09
Matches are distributed among these distances:
41 34 0.35
42 34 0.35
43 28 0.29
44 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATG
Found at i:114991971 original size:46 final size:46
Alignment explanation
Indices: 114991921--114992094 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
114991911 GTTGAGCATT
*
114991921 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
* * * * * *
114991967 CGAACTTGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTC
* *
114992014 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-C
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
* *
114992059 CTGAGCTCGTTGAGTTAAGTCCGAGTTCACTTATGG
1 C-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
114992095 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 59 0.57
47 26 0.25
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
Found at i:114992084 original size:93 final size:93
Alignment explanation
Indices: 114991916--114992086 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
114991906 GGATGGTTGA
* * *
114991916 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
* *
114991981 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TAAGTCCGAGTTCGTGAGATGTAACTAG
* * *
114992009 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-GAACTCGTTGAG
114992073 TTAAGTCCGAGTTC
65 TTAAGTCCGAGTTC
114992087 ACTTATGGGC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TAAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:114994664 original size:44 final size:43
Alignment explanation
Indices: 114994616--114994772 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 43
114994606 ATATTTTTCG
114994616 TGTAAGACCATGTCTGGGACATTGGCATCA-ATTTATGATTTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCATA-TT-TGATTTACA
* * * **
114994660 TGTAAGACCATGTCTGGGACATCGGTATCGTATTTGATTT-TG
1 TGTAAGACCATGTCTGGGACATTGGCATCATATTTGATTTACA
* * * *
114994702 TGTAAGACCCTGTCTGAGATAATGGCATCGATATTTGA-TTACA
1 TGTAAGACCATGTCTGGGACATTGGCATC-ATATTTGATTTACA
* * *
114994745 TATAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
114994773 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 21, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
42 25 0.28
43 34 0.38
44 29 0.33
45 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCATATTTGATTTACA
Found at i:114994787 original size:86 final size:86
Alignment explanation
Indices: 114994609--114994787 Score: 182
Period size: 86 Copynumber: 2.1 Consensus size: 86
114994599 CCGATATATA
* * * *
114994609 TTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCAATTTATGATTTACATGTAAGACCATGTC
1 TTTTT-GTGTAAGACCATGTCTGAGACAATGGCATCAATTTATGATTTACATATAAGACCACGTC
* ***
114994674 TGGGACATCGGTATCGTATTTG
65 TGGGACATCGGCATCGTACGAG
* * * *
114994696 ATTTTGTGTAAGACCCTGTCTGAGATAATGGCATCGATATT-TGA-TTACATATAAGACCACGTC
1 TTTTTGTGTAAGACCATGTCTGAGACAATGGCATCAAT-TTATGATTTACATATAAGACCACGTC
* * *
114994759 TGGGACGTTGGCATTGTACGAG
65 TGGGACATCGGCATCGTACGAG
114994781 CTTTTTG
1 -TTTTTG
114994788 AGCTATCCGA
Statistics
Matches: 74, Mismatches: 16, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
85 32 0.43
86 36 0.49
87 6 0.08
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (86 bp):
TTTTTGTGTAAGACCATGTCTGAGACAATGGCATCAATTTATGATTTACATATAAGACCACGTCT
GGGACATCGGCATCGTACGAG
Found at i:114994950 original size:19 final size:19
Alignment explanation
Indices: 114994926--114994981 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
114994916 GAATATGTAT
114994926 ATATGTGTGAACATATGGA
1 ATATGTGTGAACATATGGA
* **
114994945 ATATGTTTGTATTATATGGA
1 ATATGTGTG-AACATATGGA
*
114994965 A-ATGTGATGTACATATG
1 ATATGTG-TGAACATATG
114994982 AGCAAATGGT
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.39
Consensus pattern (19 bp):
ATATGTGTGAACATATGGA
Found at i:114994975 original size:20 final size:20
Alignment explanation
Indices: 114994938--114994975 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
114994928 ATGTGTGAAC
*
114994938 ATATGGAATATGTTTGTATT
1 ATATGGAATATGTATGTATT
114994958 ATATGGAA-ATGTGATGTA
1 ATATGGAATATGT-ATGTA
114994976 CATATGAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.42
Consensus pattern (20 bp):
ATATGGAATATGTATGTATT
Found at i:114998624 original size:15 final size:15
Alignment explanation
Indices: 114998604--114998634 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
114998594 ATGTATGTCT
114998604 TTTGAGCATAAACTA
1 TTTGAGCATAAACTA
114998619 TTTGAGCATAAACTA
1 TTTGAGCATAAACTA
114998634 T
1 T
114998635 GTGATGCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (15 bp):
TTTGAGCATAAACTA
Found at i:115005693 original size:42 final size:43
Alignment explanation
Indices: 115005625--115005728 Score: 138
Period size: 42 Copynumber: 2.4 Consensus size: 43
115005615 CATCAATTTA
* *
115005625 TGATTTACGTGTAAGACCATGTCTGGGACATTAGCATCG-TATT
1 TGATTT-CGTGTAAGACCATGCCTGGGACAGTAGCATCGATATT
* *
115005668 TGATTTCGTGTAAGACCCTGCCTGGGACAGTGGCATCGATATT
1 TGATTTCGTGTAAGACCATGCCTGGGACAGTAGCATCGATATT
* *
115005711 TGATTACATGTAAGACCA
1 TGATTTCGTGTAAGACCA
115005729 CATCTGGGAT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
42 28 0.53
43 25 0.47
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
TGATTTCGTGTAAGACCATGCCTGGGACAGTAGCATCGATATT
Found at i:115005736 original size:43 final size:43
Alignment explanation
Indices: 115005588--115005746 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 43
115005578 ATGTGTTTTT
* * *
115005588 CATGTAGGACCACGTCTGGGACATTGTCATCAAT-TTATGATTTA
1 CATGTAAGACCACGTCTGGGACATTGGCATCGATATT-TGA-TTA
* * * *
115005632 CGTGTAAGACCATGTCTGGGACATTAGCATCG-TATTTGATTT
1 CATGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
* * *
115005674 CGTGTAAGACC-CTGCCTGGGACAGTGGCATCGATATTTGATTA
1 CATGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTA
* **
115005717 CATGTAAGACCACATCTGGGATGTTGGCAT
1 CATGTAAGACCACGTCTGGGACATTGGCAT
115005747 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
42 29 0.31
43 35 0.38
44 29 0.31
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
Found at i:115005924 original size:19 final size:19
Alignment explanation
Indices: 115005900--115005955 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
115005890 GAATATGTAT
115005900 ATATGTGTGAACATATGGA
1 ATATGTGTGAACATATGGA
* **
115005919 ATATGTTTGTATTATATGGA
1 ATATGTGTG-AACATATGGA
*
115005939 A-ATGTGATGTACATATG
1 ATATGTG-TGAACATATG
115005956 AGCAAATGGT
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.39
Consensus pattern (19 bp):
ATATGTGTGAACATATGGA
Found at i:115005949 original size:20 final size:20
Alignment explanation
Indices: 115005912--115005949 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
115005902 ATGTGTGAAC
*
115005912 ATATGGAATATGTTTGTATT
1 ATATGGAATATGTATGTATT
115005932 ATATGGAA-ATGTGATGTA
1 ATATGGAATATGT-ATGTA
115005950 CATATGAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.42
Consensus pattern (20 bp):
ATATGGAATATGTATGTATT
Found at i:115010198 original size:20 final size:20
Alignment explanation
Indices: 115010173--115010222 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
115010163 TTTAAGAGCC
115010173 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
115010193 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
115010213 ACACGCCCGT
1 ACACGCCCGT
115010223 ATGCTAGGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.12, C:0.34, G:0.36, T:0.18
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:115011370 original size:42 final size:42
Alignment explanation
Indices: 115011260--115011419 Score: 173
Period size: 42 Copynumber: 3.8 Consensus size: 42
115011250 CACATGGTGC
* * *
115011260 CATACCAATGCCATATTCCAGATATGGTTTTACATAGAA-T-T
1 CATATCAATGCCATATCCCAGATATGGTCTTACAT-GAAGTCT
* * * *
115011301 CGTATCGATGCCAATAGCCCAGCTATGGTCTTACATGAAGTCT
1 CATATCAATGCC-ATATCCCAGATATGGTCTTACATGAAGTCT
* *
115011344 CATATCAATGCCATATCCTAGATATGGTCTTACACGAAGTCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACATGAAGTCT
* *
115011386 CATA-CTGATGCCATATCCCAAATATGGTCTTACA
1 CATATC-AATGCCATATCCCAGATATGGTCTTACA
115011420 CGTAGCCTTA
Statistics
Matches: 99, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
41 13 0.13
42 75 0.76
43 11 0.11
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACATGAAGTCT
Found at i:115011412 original size:84 final size:84
Alignment explanation
Indices: 115011260--115011419 Score: 193
Period size: 84 Copynumber: 1.9 Consensus size: 84
115011250 CACATGGTGC
* * **
115011260 CATACCAATGCCATATTCCAGATATGGTTTTACATAGAATTCGTATCGATGCCAATAGCCCAGCT
1 CATACCAATGCCATATTCCAGATATGGTCTTACATAGAATTCATATCGATGCCAATAGCCCAAAT
115011325 ATGGTCTTACATGAAGTCT
66 ATGGTCTTACATGAAGTCT
* * *
115011344 CATATCAATGCCATA-TCCTAGATATGGTCTTACA-CGAAGTCTCATA-CTGATGCC-ATATCCC
1 CATACCAATGCCATATTCC-AGATATGGTCTTACATAGAA-T-TCATATC-GATGCCAATAGCCC
115011405 AAATATGGTCTTACA
62 AAATATGGTCTTACA
115011420 CGTAGCCTTA
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
83 6 0.09
84 49 0.75
85 10 0.15
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (84 bp):
CATACCAATGCCATATTCCAGATATGGTCTTACATAGAATTCATATCGATGCCAATAGCCCAAAT
ATGGTCTTACATGAAGTCT
Found at i:115012975 original size:24 final size:23
Alignment explanation
Indices: 115012939--115012984 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
115012929 TTTGGAGAAT
115012939 TTTGTGTTTAGGTTCTGAAGGTTC
1 TTTGTGTTTAGGTTCTG-AGGTTC
*
115012963 TTTGT-TTTCAGGTTTTGAGGTT
1 TTTGTGTTT-AGGTTCTGAGGTT
115012985 AGTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.11, C:0.07, G:0.28, T:0.54
Consensus pattern (23 bp):
TTTGTGTTTAGGTTCTGAGGTTC
Found at i:115013440 original size:13 final size:14
Alignment explanation
Indices: 115013422--115013452 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
115013412 AGTTTTTATA
115013422 TTTAAAAATAT-TT
1 TTTAAAAATATCTT
115013435 TTTAAAAATATCTT
1 TTTAAAAATATCTT
115013449 TTTA
1 TTTA
115013453 TTTTTTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (14 bp):
TTTAAAAATATCTT
Found at i:115013506 original size:16 final size:16
Alignment explanation
Indices: 115013477--115013523 Score: 53
Period size: 15 Copynumber: 3.0 Consensus size: 16
115013467 TTTAAAGAGT
**
115013477 TTTATTTTACTAAA-A
1 TTTATTTTTTTAAATA
115013492 TTATATTTTTTTAAATA
1 TT-TATTTTTTTAAATA
115013509 TTTA-TTTTTTAAATA
1 TTTATTTTTTTAAATA
115013524 AGAAAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 13 0.46
16 12 0.43
17 3 0.11
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTATTTTTTTAAATA
Found at i:115013964 original size:10 final size:10
Alignment explanation
Indices: 115013949--115014020 Score: 62
Period size: 10 Copynumber: 7.5 Consensus size: 10
115013939 TAACATTGAA
115013949 TTTTATAATT
1 TTTTATAATT
115013959 TTTTATAA-T
1 TTTTATAATT
115013968 TTTTATAA-T
1 TTTTATAATT
* * *
115013977 TTTAATGAGT
1 TTTTATAATT
**
115013987 TTTTATCTTT
1 TTTTATAATT
115013997 TTTTAATAATT
1 TTTT-ATAATT
115014008 TTTT-T-ATT
1 TTTTATAATT
115014016 TTTTA
1 TTTTA
115014021 AGAATTATTT
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
8 7 0.14
9 17 0.33
10 19 0.37
11 8 0.16
ACGTcount: A:0.26, C:0.01, G:0.03, T:0.69
Consensus pattern (10 bp):
TTTTATAATT
Found at i:115014010 original size:21 final size:20
Alignment explanation
Indices: 115013976--115014037 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 20
115013966 ATTTTTATAA
* *
115013976 TTTTAATGAGTTTTTATCTTT
1 TTTTAATAATTTTTTAT-TTT
*
115013997 TTTTAATAATTTTTT-TATT
1 TTTTAATAATTTTTTATTTT
*
115014016 TTTTAAGAATTATTTTATTTT
1 TTTTAATAATT-TTTTATTTT
115014037 T
1 T
115014038 GACATTGTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
19 12 0.35
20 5 0.15
21 17 0.50
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.69
Consensus pattern (20 bp):
TTTTAATAATTTTTTATTTT
Found at i:115014021 original size:19 final size:19
Alignment explanation
Indices: 115013956--115014037 Score: 71
Period size: 19 Copynumber: 4.3 Consensus size: 19
115013946 GAATTTTATA
*
115013956 ATTTTTT-ATAATTTTTAT
1 ATTTTTTAATAATTTTTTT
* *
115013974 A-ATTTTAATGAGTTTTTATCT
1 ATTTTTTAAT-AATTTTT-T-T
115013995 -TTTTTTAATAATTTTTTT
1 ATTTTTTAATAATTTTTTT
* *
115014013 ATTTTTTAAGAATTATTTT
1 ATTTTTTAATAATTTTTTT
115014032 ATTTTT
1 ATTTTT
115014038 GACATTGTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
17 4 0.08
18 4 0.08
19 29 0.57
20 6 0.12
21 8 0.16
ACGTcount: A:0.27, C:0.01, G:0.04, T:0.68
Consensus pattern (19 bp):
ATTTTTTAATAATTTTTTT
Found at i:115020344 original size:16 final size:15
Alignment explanation
Indices: 115020323--115020365 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
115020313 TGTTTGGTTC
115020323 ACTGTAATGAAATAAA
1 ACTGTAAT-AAATAAA
115020339 ACTGTAATAAAGTAAA
1 ACTGTAATAAA-TAAA
*
115020355 ACAGTAATAAA
1 ACTGTAATAAA
115020366 ATAGAGTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 3 0.12
16 22 0.88
ACGTcount: A:0.58, C:0.07, G:0.12, T:0.23
Consensus pattern (15 bp):
ACTGTAATAAATAAA
Found at i:115020468 original size:15 final size:16
Alignment explanation
Indices: 115020448--115020483 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
115020438 TTATTAAATT
115020448 TATAATTAAAT-ATAA
1 TATAATTAAATAATAA
115020463 TATAA-TAAATAATAA
1 TATAATTAAATAATAA
115020478 -ATAATT
1 TATAATT
115020484 TGATCAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TATAATTAAATAATAA
Found at i:115022266 original size:48 final size:48
Alignment explanation
Indices: 115022195--115022337 Score: 196
Period size: 48 Copynumber: 3.0 Consensus size: 48
115022185 AGGAGTTCCG
* * * *
115022195 ATCCCTTTGTTCTTGGCCCCAGCCACCGTTCGGATTCCCATAATCTCT
1 ATCCCTTTGTTCTCGACTCCAGCCACCGCTCGGATTCCCATAATCTCT
*
115022243 ATCCCTTTGTTCTCGACTCCAGCCACCGCTCGGATTCCTATAATCTCT
1 ATCCCTTTGTTCTCGACTCCAGCCACCGCTCGGATTCCCATAATCTCT
* * * * *
115022291 ATCCCTTTGTTCTCGACTCCAGCCGCCACTTGGATTTCCGTAATCTC
1 ATCCCTTTGTTCTCGACTCCAGCCACCGCTCGGATTCCCATAATCTC
115022338 GACTCTTCCA
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 84 1.00
ACGTcount: A:0.15, C:0.37, G:0.14, T:0.34
Consensus pattern (48 bp):
ATCCCTTTGTTCTCGACTCCAGCCACCGCTCGGATTCCCATAATCTCT
Found at i:115025202 original size:19 final size:20
Alignment explanation
Indices: 115025174--115025211 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
115025164 TCTCATTTTT
*
115025174 TATTTGTTTTT-TGTTTTAA
1 TATTTATTTTTATGTTTTAA
115025193 TATTTATTTTTATGTTTTA
1 TATTTATTTTTATGTTTTA
115025212 GATGTATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.74
Consensus pattern (20 bp):
TATTTATTTTTATGTTTTAA
Found at i:115029958 original size:14 final size:14
Alignment explanation
Indices: 115029939--115029968 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
115029929 TTTTGACGGG
115029939 TTTATATATATATA
1 TTTATATATATATA
*
115029953 TTTATATATTTATA
1 TTTATATATATATA
115029967 TT
1 TT
115029969 CCGTGATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTATATATATATA
Found at i:115032323 original size:11 final size:11
Alignment explanation
Indices: 115032307--115032331 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
115032297 TATAGATAAA
115032307 ATACTATTAAG
1 ATACTATTAAG
115032318 ATACTATTAAG
1 ATACTATTAAG
115032329 ATA
1 ATA
115032332 AGAATTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (11 bp):
ATACTATTAAG
Found at i:115033994 original size:15 final size:15
Alignment explanation
Indices: 115033970--115034001 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
115033960 TATGCATGTA
*
115033970 AAATATAAAAGACAT
1 AAATACAAAAGACAT
115033985 AAATACAAAAGACAT
1 AAATACAAAAGACAT
115034000 AA
1 AA
115034002 TGGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:115035184 original size:23 final size:23
Alignment explanation
Indices: 115035157--115035208 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
115035147 CCTTAGGGGA
* * *
115035157 GATTAACGAGTGGATGGGGACGT
1 GATTAACGAATGGAAGGGGACAT
*
115035180 GATTAACGAATGGAAGGGGATAT
1 GATTAACGAATGGAAGGGGACAT
115035203 GATTAA
1 GATTAA
115035209 TGAAGGATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.06, G:0.37, T:0.23
Consensus pattern (23 bp):
GATTAACGAATGGAAGGGGACAT
Found at i:115045709 original size:29 final size:29
Alignment explanation
Indices: 115045670--115045744 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
115045660 GGTTGAGAGA
* *
115045670 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
115045699 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
115045728 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
115045745 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:115054188 original size:79 final size:79
Alignment explanation
Indices: 115054049--115054203 Score: 213
Period size: 79 Copynumber: 2.0 Consensus size: 79
115054039 TGTGTATGAA
* *** *
115054049 TGTGCGGGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAA
115054114 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * *
115054127 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTA
*
115054192 TGTCCCGAAGGC
65 AGTCCCGAAGGC
115054204 GTTTGAACGA
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 25 0.38
79 32 0.48
80 9 0.14
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.25
Consensus pattern (79 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:115054203 original size:40 final size:39
Alignment explanation
Indices: 115054049--115054172 Score: 212
Period size: 39 Copynumber: 3.2 Consensus size: 39
115054039 TGTGTATGAA
*
115054049 TGTGCGGGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
115054088 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
115054127 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
115054167 TGTGCG
1 TGTGCG
115054173 GGTTACCATA
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 64 0.79
40 17 0.21
ACGTcount: A:0.20, C:0.19, G:0.35, T:0.26
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:115054230 original size:79 final size:78
Alignment explanation
Indices: 115054059--115054241 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 78
115054049 TGTGCGGGTT
* *** *
115054059 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC
1 GTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGGC
** *
115054124 AATTGTGCGAGTT
66 AATTGAACGAGTA
* * *
115054137 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTATGTCCCGAAG
1 GTGATATCCGGGTTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAG-CCCGAAG
**
115054202 GCGTTTGAACGAGTA
64 GCAATTGAACGAGTA
*
115054217 GCT-ATATCC-GGTTAAACTCCGAAGG
1 G-TGATATCCGGGTTAAGC-CCGAAGG
115054242 TATGTGATTC
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
78 17 0.20
79 45 0.52
80 24 0.28
81 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.24
Consensus pattern (78 bp):
GTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGGC
AATTGAACGAGTA
Found at i:115056771 original size:29 final size:29
Alignment explanation
Indices: 115056732--115056806 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
115056722 GGTTGAGAGA
* *
115056732 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
* * *
115056761 ATGGCACTAAGTGTACAAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
115056790 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
115056807 TGGTTGATTA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 5 0.13
29 33 0.87
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:115065933 original size:55 final size:55
Alignment explanation
Indices: 115065847--115065978 Score: 246
Period size: 55 Copynumber: 2.4 Consensus size: 55
115065837 GTCGTATAAC
115065847 AAGATTACCAGTCCAGGCTAAATCCTTTATATAGCGTATGCTCAAAAGCTCGATT
1 AAGATTACCAGTCCAGGCTAAATCCTTTATATAGCGTATGCTCAAAAGCTCGATT
*
115065902 AGGATTACCAGTCCAGGCTAAATCCTTTATATAGCGTATGCTCAAAAGCTCGATT
1 AAGATTACCAGTCCAGGCTAAATCCTTTATATAGCGTATGCTCAAAAGCTCGATT
*
115065957 AAGATTACCAGTCCAGGATAAA
1 AAGATTACCAGTCCAGGCTAAA
115065979 CCCTAATCTT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 74 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.27
Consensus pattern (55 bp):
AAGATTACCAGTCCAGGCTAAATCCTTTATATAGCGTATGCTCAAAAGCTCGATT
Found at i:115067575 original size:28 final size:27
Alignment explanation
Indices: 115067544--115067673 Score: 84
Period size: 28 Copynumber: 4.6 Consensus size: 27
115067534 AAAATTTTGA
*
115067544 AAAGGTAAGCCTTTGTGGCAAACCTGTT
1 AAAGGTAAGCCTTTGTGGCAAACCTG-G
* *
115067572 AAAGG-ACAACCTTTATGGCAAAACTCTGG
1 AAAGGTA-AGCCTTTGTGGC-AAAC-CTGG
* * ** *
115067601 AAAGGTAGGCCTTTATGGTGAACCTGTT
1 AAAGGTAAGCCTTTGTGGCAAACCTG-G
* *
115067629 AAAGGATAA-CCTTTGTGAGAAAAATCTGG
1 AAAGG-TAAGCCTTTGTG-G-CAAACCTGG
115067658 AAAGGTAAGCCTTTGT
1 AAAGGTAAGCCTTTGT
115067674 AATAAACTCT
Statistics
Matches: 79, Mismatches: 14, Indels: 17
0.72 0.13 0.15
Matches are distributed among these distances:
27 4 0.05
28 33 0.42
29 33 0.42
30 9 0.11
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (27 bp):
AAAGGTAAGCCTTTGTGGCAAACCTGG
Found at i:115067584 original size:57 final size:56
Alignment explanation
Indices: 115067517--115067673 Score: 190
Period size: 57 Copynumber: 2.8 Consensus size: 56
115067507 ATCTCTTTTT
* *
115067517 AAGGAC-ACCTTTGTGAAAAAATTTTGAAAAGGTAAGCCTTTGTGGCAAACCTGTTA
1 AAGGACAACCTTTGTGAAAAAA-TCTGGAAAGGTAAGCCTTTGTGGCAAACCTGTTA
* * * * * **
115067573 AAGGACAACCTTTATGGCAAAACTCTGGAAAGGTAGGCCTTTATGGTGAACCTGTTA
1 AAGGACAACCTTTGT-GAAAAAATCTGGAAAGGTAAGCCTTTGTGGCAAACCTGTTA
*
115067630 AAGGATAACCTTTGTGAGAAAAATCTGGAAAGGTAAGCCTTTGT
1 AAGGACAACCTTTGTGA-AAAAATCTGGAAAGGTAAGCCTTTGT
115067674 AATAAACTCT
Statistics
Matches: 83, Mismatches: 15, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
56 7 0.08
57 71 0.86
58 5 0.06
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (56 bp):
AAGGACAACCTTTGTGAAAAAATCTGGAAAGGTAAGCCTTTGTGGCAAACCTGTTA
Found at i:115077115 original size:48 final size:48
Alignment explanation
Indices: 115077042--115077267 Score: 319
Period size: 48 Copynumber: 4.7 Consensus size: 48
115077032 CTCACATACT
* * *
115077042 AAGTGCTCATATCATGGCCCGAAGCCAACTCAATATATCTTGCACCCG
1 AAGTGCTAATATCATGGCCCGAAGCCAAATCAATATAACTTGCACCCG
*
115077090 AAGTGCTAATATCATGGCCCAAAGCCAAATCAATA-AAGCTTGCACCCG
1 AAGTGCTAATATCATGGCCCGAAGCCAAATCAATATAA-CTTGCACCCG
* * *
115077138 AAGTACCAATATCATGGCCCGAAGCCAAATCAATGTAACTTGCACCCG
1 AAGTGCTAATATCATGGCCCGAAGCCAAATCAATATAACTTGCACCCG
** * **
115077186 AAGTGCTAATATCATGGCCTAAAGTCAAATCAATATAACTCACACCCG
1 AAGTGCTAATATCATGGCCCGAAGCCAAATCAATATAACTTGCACCCG
*
115077234 AAGTGCTAATAACATGGCCCGAAGCCAAATCAAT
1 AAGTGCTAATATCATGGCCCGAAGCCAAATCAAT
115077268 GTATCTCCTA
Statistics
Matches: 156, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
47 1 0.01
48 153 0.98
49 2 0.01
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.20
Consensus pattern (48 bp):
AAGTGCTAATATCATGGCCCGAAGCCAAATCAATATAACTTGCACCCG
Found at i:115080008 original size:47 final size:49
Alignment explanation
Indices: 115079954--115080176 Score: 189
Period size: 47 Copynumber: 4.7 Consensus size: 49
115079944 GTAAGGTGCT
* *
115079954 GATGCCATGTCTCAGACATGGTCTTACACTGGCTCAT-ATC-TCAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCATCAAGTC
* *
115080001 GATGCCATGTCCCAGACATGGTCTTACACTAACT-ATCATC-TCGTAG-C
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCATC-AAGTC
* * * * * * *
115080048 TGATG-CATGTTCCAAACAT-GTCTTACACTAGCAC-TCGTCTTGATGTC
1 -GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCATCAAGTC
* * * ***
115080095 GATGCCATGTCCTAGACATGGTCTTACACTGGCTC-TAATCATGTGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCATCAAGTC
*
115080143 GATG-CATGTCCCAGACAT-TTCTTACACTAGCTCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCA
115080177 CAATAACCCA
Statistics
Matches: 142, Mismatches: 25, Indels: 18
0.77 0.14 0.10
Matches are distributed among these distances:
46 36 0.25
47 75 0.53
48 31 0.22
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCATCAAGTC
Found at i:115080147 original size:94 final size:94
Alignment explanation
Indices: 115079998--115080173 Score: 239
Period size: 94 Copynumber: 1.9 Consensus size: 94
115079988 CATATCTCAA
* *
115079998 GTCGATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCTCGTAGCTGATGCATGTTCCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAACTATAATCTCGTAGCTGATGCATGTCCCAA
115080063 ACATGTCTTACACTAGCACTCGTCTTGAT
66 ACATGTCTTACACTAGCACTCGTCTTGAT
* ** * *
115080092 GTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTAATCAT-GT-GGTCGATGCATGTCCC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAACTATAATC-TCGTAGCT-GATGCATGTCCC
* *
115080155 AGACATTTCTTACACTAGC
64 AAACATGTCTTACACTAGC
115080174 TCACAATAAC
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
93 2 0.03
94 68 0.96
95 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (94 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTAACTATAATCTCGTAGCTGATGCATGTCCCAA
ACATGTCTTACACTAGCACTCGTCTTGAT
Found at i:115082129 original size:21 final size:19
Alignment explanation
Indices: 115082087--115082130 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
115082077 TAGATATTTC
* *
115082087 TTTTGAACCCTCAAATCAA
1 TTTTGAACACTCAAAACAA
115082106 TTTTGAACACTCATAAAACAA
1 TTTTGAACACTC--AAAACAA
115082127 TTTT
1 TTTT
115082131 CAAAGAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 11 0.52
21 10 0.48
ACGTcount: A:0.39, C:0.20, G:0.05, T:0.36
Consensus pattern (19 bp):
TTTTGAACACTCAAAACAA
Found at i:115087469 original size:12 final size:12
Alignment explanation
Indices: 115087452--115087477 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
115087442 TAGGTAAAGA
115087452 ATATATATAGTT
1 ATATATATAGTT
115087464 ATATATATAGTT
1 ATATATATAGTT
115087476 AT
1 AT
115087478 GGTTAGCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
ATATATATAGTT
Found at i:115089774 original size:13 final size:13
Alignment explanation
Indices: 115089756--115089781 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
115089746 CATCGGACCT
115089756 TCAACTCATGCAA
1 TCAACTCATGCAA
115089769 TCAACTCATGCAA
1 TCAACTCATGCAA
115089782 CTGCCATGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.31, G:0.08, T:0.23
Consensus pattern (13 bp):
TCAACTCATGCAA
Found at i:115090020 original size:23 final size:24
Alignment explanation
Indices: 115089972--115090026 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 24
115089962 GGTTGTTTTA
* *
115089972 GTTTTATTTTATTTTTGTTGCTAT
1 GTTTTATTTTATTTTTCTTGCAAT
115089996 GTTTT-TTTTATTTTTCTT-CAAAT
1 GTTTTATTTTATTTTTCTTGC-AAT
115090019 GTTTTATT
1 GTTTTATT
115090027 AGACTTTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 1 0.04
23 19 0.70
24 7 0.26
ACGTcount: A:0.15, C:0.05, G:0.09, T:0.71
Consensus pattern (24 bp):
GTTTTATTTTATTTTTCTTGCAAT
Found at i:115093599 original size:21 final size:21
Alignment explanation
Indices: 115093573--115093613 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
115093563 CGAGTGGATC
115093573 AGCTCTTACAAGCTTCTGTTA
1 AGCTCTTACAAGCTTCTGTTA
* *
115093594 AGCTCTTTCGAGCTTCTGTT
1 AGCTCTTACAAGCTTCTGTT
115093614 GGCGGATTCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.24, G:0.17, T:0.41
Consensus pattern (21 bp):
AGCTCTTACAAGCTTCTGTTA
Found at i:115095188 original size:21 final size:21
Alignment explanation
Indices: 115095162--115095214 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
115095152 TTCGGGTGGA
*
115095162 TCAGCTCTTACAAGCTTCTGT
1 TCAGCTCTTACAAGCTTCTAT
* *
115095183 TCAGCTCTTTCAAGCTTTTAT
1 TCAGCTCTTACAAGCTTCTAT
115095204 TCAGCTCTTAC
1 TCAGCTCTTAC
115095215 GTGTTCAGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.19, C:0.28, G:0.11, T:0.42
Consensus pattern (21 bp):
TCAGCTCTTACAAGCTTCTAT
Found at i:115100961 original size:28 final size:28
Alignment explanation
Indices: 115100894--115100995 Score: 145
Period size: 27 Copynumber: 3.7 Consensus size: 28
115100884 AGAATAGATC
* * *
115100894 TTGTGACAGAGTCACCAGACACAGATA-
1 TTGTGGCAGAGCCACCAGAAACAGATAT
115100921 TTGTGGCAGAGCCACCAGAAACAGATAT
1 TTGTGGCAGAGCCACCAGAAACAGATAT
*
115100949 TTGTGGCAGAGCCACCAG-ATCAGATAT
1 TTGTGGCAGAGCCACCAGAAACAGATAT
*
115100976 TTATGGCAGAGCCACCAGAA
1 TTGTGGCAGAGCCACCAGAA
115100996 CGCTTCCTCC
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
27 49 0.72
28 19 0.28
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.19
Consensus pattern (28 bp):
TTGTGGCAGAGCCACCAGAAACAGATAT
Found at i:115101118 original size:24 final size:25
Alignment explanation
Indices: 115101091--115101144 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
115101081 TTTCAGTCAA
* *
115101091 AATTAAC-CCTAGGGGTATAATGGT
1 AATTAACACCTAGGGATAAAATGGT
*
115101115 AATTTTACACCTAGGGATAAAATGGT
1 AA-TTAACACCTAGGGATAAAATGGT
115101141 AATT
1 AATT
115101145 TTCATACTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
24 2 0.08
25 6 0.24
26 17 0.68
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (25 bp):
AATTAACACCTAGGGATAAAATGGT
Found at i:115109132 original size:13 final size:13
Alignment explanation
Indices: 115109114--115109143 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
115109104 CTGGCAATCA
115109114 TGTCACACGACCG
1 TGTCACACGACCG
*
115109127 TGTCACACGAGCG
1 TGTCACACGACCG
115109140 TGTC
1 TGTC
115109144 CCTACCGAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.20
Consensus pattern (13 bp):
TGTCACACGACCG
Found at i:115114293 original size:40 final size:39
Alignment explanation
Indices: 115114166--115114333 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 39
115114156 AGGAATATAA
115114166 CCGGATATAATC-ACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-CAAC-TAGCAC-AATGCCTTCGGGTCTTAGC
* * *
115114206 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCAC-AATGCCTTCGGGTCTTAGC
* * *
115114246 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAA-TGCCTTCGGGTCTTAGC
*** * * * *
115114286 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACAACTAGCACAA-TGCCTTCGGGTCTTAGC
115114326 CCGGATAT
1 CCGGATAT
115114334 TATTCAATTT
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 104 0.97
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACAACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:115114316 original size:80 final size:80
Alignment explanation
Indices: 115114182--115114333 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
115114172 ATAATCACGT
* *
115114182 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGGCTTAGCC
115114247 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
115114262 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGGCTTAG
115114325 CCCGGATAT
64 CCCGGATAT
115114334 TATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:115124300 original size:25 final size:24
Alignment explanation
Indices: 115124253--115124309 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
115124243 ATTATTATTA
* *
115124253 TATTATATTATTTTAATATATACAT
1 TATTATATTAATTTAATAAATAC-T
**
115124278 TATTATATTAATTTCTTAAATACT
1 TATTATATTAATTTAATAAATACT
*
115124302 AATTATAT
1 TATTATAT
115124310 AATATATGTA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 8 0.30
25 19 0.70
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.54
Consensus pattern (24 bp):
TATTATATTAATTTAATAAATACT
Found at i:115128292 original size:39 final size:39
Alignment explanation
Indices: 115128179--115128373 Score: 246
Period size: 39 Copynumber: 4.9 Consensus size: 39
115128169 CTCGTTCAAA
* * ** * *
115128179 TGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAA
1 TGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAT
* *
115128219 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAT
* *
115128259 TGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACCAT
1 TGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* *
115128298 TGCCTTCGGGCTTAGCCCGGATATCATAATTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* *
115128337 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 TGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
115128374 TTCATACACA
Statistics
Matches: 138, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 96 0.70
40 42 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.25
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
Found at i:115135432 original size:40 final size:40
Alignment explanation
Indices: 115135368--115135480 Score: 138
Period size: 40 Copynumber: 2.9 Consensus size: 40
115135358 GCTACTCGTT
* * * ***
115135368 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
115135408 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
115135448 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
115135481 TTCGCACATT
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 18 0.29
40 45 0.71
ACGTcount: A:0.27, C:0.32, G:0.21, T:0.20
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:115137231 original size:45 final size:45
Alignment explanation
Indices: 115137101--115137233 Score: 143
Period size: 45 Copynumber: 3.0 Consensus size: 45
115137091 ATGCTATCAC
* * *
115137101 ATATCGATGCCACTGTTCCAGACAGGGTCTTACAC--GAATCA-A-
1 ATATCGATGCCAATGTCCCAGACAAGGTCTTACACAAGAA-CACAT
* * * *
115137143 ATA-CGATGCCGATGTCCCAGATATGGTCTTACACATA-ACCACAT
1 ATATCGATGCCAATGTCCCAGACAAGGTCTTACACA-AGAACACAT
115137187 ATATCGATGCCAATGTCCCAGACAAGGTCTTACACAAGAACACAT
1 ATATCGATGCCAATGTCCCAGACAAGGTCTTACACAAGAACACAT
115137232 AT
1 AT
115137234 TAGAAATCCT
Statistics
Matches: 74, Mismatches: 10, Indels: 11
0.78 0.11 0.12
Matches are distributed among these distances:
41 26 0.35
42 5 0.07
43 2 0.03
44 4 0.05
45 37 0.50
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (45 bp):
ATATCGATGCCAATGTCCCAGACAAGGTCTTACACAAGAACACAT
Found at i:115142438 original size:41 final size:42
Alignment explanation
Indices: 115142388--115142500 Score: 147
Period size: 41 Copynumber: 2.7 Consensus size: 42
115142378 ACTGAGATTA
*
115142388 CGTGTAAGACCATATCTGGGATATGGCATCAATATGAGA-CT
1 CGTGTAAGACCATATCTGGGATATGGCATCAATACGAGATCT
* * * *
115142429 CGTGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTT
1 CGTGTAAGACCATATCTGGGATA-TGGCATCAATACGAGATCT
* *
115142472 CATGTAAGACCATATCTAGGATATGGCAT
1 CGTGTAAGACCATATCTGGGATATGGCAT
115142501 TGGTATGGTA
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 21 0.34
42 20 0.33
43 20 0.33
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATCAATACGAGATCT
Found at i:115142499 original size:42 final size:42
Alignment explanation
Indices: 115142381--115142500 Score: 152
Period size: 42 Copynumber: 2.9 Consensus size: 42
115142371 TAGGGTTACT
* *
115142381 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATAT
1 GAGATTTCGTGTAAGACCATATCTGGGATATGGCATCAATAC
* * * *
115142423 GAGA-CTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATAC
1 GAGATTTCGTGTAAGACCATATCTGGGATA-TGGCATCAATAC
* *
115142465 GAGATTTCATGTAAGACCATATCTAGGATATGGCAT
1 GAGATTTCGTGTAAGACCATATCTGGGATATGGCAT
115142501 TGGTATGGTA
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 21 0.32
42 24 0.37
43 20 0.31
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (42 bp):
GAGATTTCGTGTAAGACCATATCTGGGATATGGCATCAATAC
Found at i:115145717 original size:48 final size:48
Alignment explanation
Indices: 115145608--115145723 Score: 151
Period size: 48 Copynumber: 2.4 Consensus size: 48
115145598 TTTGGGTGAT
* * * **
115145608 ATGTGTGCCAGTCTAAGACCATGTCTGGGACATGGCATTGGCCACATT
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGACATTGGCCACAGC
* * * *
115145656 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGACATTGGCCTCGGC
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGACATTGGCCACAGC
115145704 ATGTGAGCCAGTGTAAGACC
1 ATGTGAGCCAGTGTAAGACC
115145724 CTTTTTGGAA
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 57 1.00
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (48 bp):
ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGACATTGGCCACAGC
Found at i:115151583 original size:2 final size:2
Alignment explanation
Indices: 115151578--115151603 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
115151568 ACACACACAC
115151578 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
115151604 TCAAAACACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:115152862 original size:19 final size:19
Alignment explanation
Indices: 115152838--115152876 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
115152828 AAAGCCCAAA
115152838 TATCACTATTATAAAGTTG
1 TATCACTATTATAAAGTTG
115152857 TATCACTATTATAAAGTTG
1 TATCACTATTATAAAGTTG
115152876 T
1 T
115152877 CTCATAAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (19 bp):
TATCACTATTATAAAGTTG
Found at i:115166271 original size:91 final size:91
Alignment explanation
Indices: 115166116--115166298 Score: 357
Period size: 91 Copynumber: 2.0 Consensus size: 91
115166106 GTATCAGTGT
115166116 TAGTATGCATAAGGGCCTTAGCCCATCACAAGATTAGTAACAGATATACAGTATAAAGTCCTACC
1 TAGTATGCATAAGGGCCTTAGCCCATCACAAGATTAGTAACAGATATACAGTATAAAGTCCTACC
115166181 CAACTAGTCTCTATACTCCATCTTCG
66 CAACTAGTCTCTATACTCCATCTTCG
*
115166207 TAGTATGCATAAGGGCCTTAGCCCATCACAATATTAGTAACAGATATACAGTATAAAGTCCTACC
1 TAGTATGCATAAGGGCCTTAGCCCATCACAAGATTAGTAACAGATATACAGTATAAAGTCCTACC
115166272 CAACTAGTCTCTATACTCCATCTTCG
66 CAACTAGTCTCTATACTCCATCTTCG
115166298 T
1 T
115166299 CCAACCCTAC
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (91 bp):
TAGTATGCATAAGGGCCTTAGCCCATCACAAGATTAGTAACAGATATACAGTATAAAGTCCTACC
CAACTAGTCTCTATACTCCATCTTCG
Found at i:115173317 original size:87 final size:85
Alignment explanation
Indices: 115173163--115173323 Score: 200
Period size: 87 Copynumber: 1.9 Consensus size: 85
115173153 AAATTAAAAA
* * * *
115173163 AAAAAAGTAATTAAGCCCTGATTTTTTTCATTCAATTGGGTACTCAAATTTTTAAAATGCATAAA
1 AAAAAAGCAATTAAGCCCTGATTTTTTTCACTCAATTGGGTACTCAAATCTGTAAAATGCATAAA
115173228 AAAGACCCTCATATTTTTTC
66 AAAGACCCTCATATTTTTTC
* *
115173248 AAAAAAGCAATTAAGCCCTTGATTTTTTTTGCACTGAATTGGGTACTTC-AA-CTGTCAAATGCA
1 AAAAAAGCAATTAAGCCC-TGA-TTTTTTT-CACTCAATTGGGTAC-TCAAATCTGTAAAATGCA
* *
115173311 TCAAAAAGGCCCT
62 TAAAAAAGACCCT
115173324 TTAACCGTTA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
85 17 0.27
86 3 0.05
87 27 0.42
88 15 0.23
89 2 0.03
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.34
Consensus pattern (85 bp):
AAAAAAGCAATTAAGCCCTGATTTTTTTCACTCAATTGGGTACTCAAATCTGTAAAATGCATAAA
AAAGACCCTCATATTTTTTC
Found at i:115173439 original size:9 final size:9
Alignment explanation
Indices: 115173425--115173537 Score: 70
Period size: 9 Copynumber: 11.8 Consensus size: 9
115173415 GTGACATGTG
115173425 ATAAAAAAT
1 ATAAAAAAT
115173434 ATAAAAAAT
1 ATAAAAAAT
*
115173443 A-AAAATCA-
1 ATAAAA-AAT
*
115173451 ATAAAAATT
1 ATAAAAAAT
115173460 ATAAAAAAT
1 ATAAAAAAT
115173469 ATTAAAAAATT
1 A-TAAAAAA-T
*
115173480 ATTAAAAAT
1 ATAAAAAAT
115173489 -TAGAACAAAT
1 ATA-AA-AAAT
*
115173499 TTATAAAAAT
1 ATA-AAAAAT
115173509 CATAAAAAAATT
1 -AT-AAAAAA-T
*
115173521 ATAAAATAT
1 ATAAAAAAT
115173530 ATCAAAAA
1 AT-AAAAA
115173538 GGCTCTTTAA
Statistics
Matches: 82, Mismatches: 10, Indels: 23
0.71 0.09 0.20
Matches are distributed among these distances:
8 6 0.07
9 30 0.37
10 30 0.37
11 14 0.17
12 2 0.02
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.27
Consensus pattern (9 bp):
ATAAAAAAT
Found at i:115173466 original size:10 final size:10
Alignment explanation
Indices: 115173453--115173526 Score: 71
Period size: 10 Copynumber: 7.3 Consensus size: 10
115173443 AAAAATCAAT
115173453 AAAAATTATA
1 AAAAATTATA
115173463 AAAAA-TATTA
1 AAAAATTA-TA
*
115173473 AAAAATTATT
1 AAAAATTATA
*
115173483 AAAAATTAGA
1 AAAAATTATA
*
115173493 ACAAATT-TA
1 AAAAATTATA
*
115173502 TAAAAATCATAA
1 -AAAAATTAT-A
115173514 AAAAATTATA
1 AAAAATTATA
115173524 AAA
1 AAA
115173527 TATATCAAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
9 3 0.06
10 36 0.71
11 11 0.22
12 1 0.02
ACGTcount: A:0.68, C:0.03, G:0.01, T:0.28
Consensus pattern (10 bp):
AAAAATTATA
Found at i:115173468 original size:20 final size:19
Alignment explanation
Indices: 115173425--115173526 Score: 79
Period size: 20 Copynumber: 5.3 Consensus size: 19
115173415 GTGACATGTG
115173425 ATAAAAAAT-ATAAAAA--
1 ATAAAAAATAATAAAAATT
115173441 AT-AAAAATCAATAAAAATT
1 ATAAAAAAT-AATAAAAATT
*
115173460 ATAAAAAATATTAAAAAATT
1 ATAAAAAATAAT-AAAAATT
* * *
115173480 ATTAAAAATTAGAACAAATTT
1 ATAAAAAATAATAA-AAA-TT
115173501 ATAAAAATCATAA-AAAAATT
1 ATAAAAA--ATAATAAAAATT
115173521 ATAAAA
1 ATAAAA
115173527 TATATCAAAA
Statistics
Matches: 69, Mismatches: 7, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
15 6 0.09
16 2 0.03
17 7 0.10
19 6 0.09
20 32 0.46
21 11 0.16
22 2 0.03
23 3 0.04
ACGTcount: A:0.70, C:0.03, G:0.01, T:0.26
Consensus pattern (19 bp):
ATAAAAAATAATAAAAATT
Found at i:115173783 original size:10 final size:10
Alignment explanation
Indices: 115173763--115173815 Score: 60
Period size: 9 Copynumber: 5.7 Consensus size: 10
115173753 TTATAATTTC
*
115173763 TTTTCTATAT
1 TTTTATATAT
*
115173773 TTCTATATA-
1 TTTTATATAT
115173782 TTTTATA-AT
1 TTTTATATAT
115173791 TTTTATA-AT
1 TTTTATATAT
115173800 TTTTA-ATAT
1 TTTTATATAT
115173809 TTTTATA
1 TTTTATA
115173816 GCTTTTAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
8 2 0.05
9 27 0.73
10 8 0.22
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (10 bp):
TTTTATATAT
Found at i:115173794 original size:9 final size:9
Alignment explanation
Indices: 115173782--115173857 Score: 61
Period size: 9 Copynumber: 8.7 Consensus size: 9
115173772 TTTCTATATA
115173782 TTTTATAAT
1 TTTTATAAT
115173791 TTTTATAAT
1 TTTTATAAT
115173800 TTTTA-ATAT
1 TTTTATA-AT
*
115173809 TTTTAT-AG
1 TTTTATAAT
*
115173817 CTTT-TAA-
1 TTTTATAAT
*
115173824 TTTAATAAT
1 TTTTATAAT
*
115173833 TTTTATAAC
1 TTTTATAAT
*
115173842 TTTTATTGAT
1 TTTTA-TAAT
115173852 TTTTAT
1 TTTTAT
115173858 TTTTATCATT
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
7 3 0.06
8 9 0.17
9 34 0.64
10 7 0.13
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (9 bp):
TTTTATAAT
Found at i:115173797 original size:18 final size:17
Alignment explanation
Indices: 115173771--115173863 Score: 54
Period size: 18 Copynumber: 5.5 Consensus size: 17
115173761 TCTTTTCTAT
*
115173771 ATTTCTATATATTTTATA
1 ATTTTTATATATTTT-TA
115173789 ATTTTTATA-ATTTTTA
1 ATTTTTATATATTTTTA
*
115173805 ATATTTT-TATAGCTTTTA
1 AT-TTTTATATA-TTTTTA
*
115173823 A-TTTAATA-ATTTTTATA
1 ATTTTTATATA-TTTT-TA
*
115173840 ACTTTTAT-TGATTTTT-
1 ATTTTTATAT-ATTTTTA
115173856 ATTTTTAT
1 ATTTTTAT
115173864 CATTTTTTGT
Statistics
Matches: 60, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
16 20 0.33
17 16 0.27
18 23 0.38
19 1 0.02
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (17 bp):
ATTTTTATATATTTTTA
Found at i:115173830 original size:23 final size:24
Alignment explanation
Indices: 115173801--115173846 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
115173791 TTTTATAATT
*
115173801 TTTAAT-ATTTTTATAGCTTTTAA
1 TTTAATAATTTTTATAACTTTTAA
115173824 TTTAATAATTTTTATAACTTTTA
1 TTTAATAATTTTTATAACTTTTA
115173847 TTGATTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 6 0.29
24 15 0.71
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (24 bp):
TTTAATAATTTTTATAACTTTTAA
Found at i:115175385 original size:31 final size:31
Alignment explanation
Indices: 115175342--115175405 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
115175332 CCTTTTCATA
115175342 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
115175373 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
115175404 TT
1 TT
115175406 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:115175674 original size:23 final size:23
Alignment explanation
Indices: 115175620--115175740 Score: 190
Period size: 23 Copynumber: 5.1 Consensus size: 23
115175610 CCTAGCCTCT
115175620 TTTAATAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
115175642 TTTTTAATAACTGGGGCATAAGCCC
1 --TTTAATAACTGGGGCATAAGCCC
115175667 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
115175690 TTTATCATAACTGGGGCGTAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
115175715 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
115175738 TTT
1 TTT
115175741 TGCACTTCCT
Statistics
Matches: 92, Mismatches: 2, Indels: 7
0.91 0.02 0.07
Matches are distributed among these distances:
23 48 0.52
24 16 0.17
25 28 0.30
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:115175702 original size:48 final size:48
Alignment explanation
Indices: 115175620--115175740 Score: 208
Period size: 48 Copynumber: 2.5 Consensus size: 48
115175610 CCTAGCCTCT
*
115175620 TTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTATAATAACTGGGGCATAAGCCC
* *
115175667 TTTAATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTATAATAACTGGGGCATAAGCCC
115175715 TTTAATAACTGGGGCATAAGCCCTTT
1 TTTAATAACTGGGGCATAAGCCCTTT
115175741 TGCACTTCCT
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
47 16 0.23
48 54 0.77
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (48 bp):
TTTAATAACTGGGGCATAAGCCCTTTATAATAACTGGGGCATAAGCCC
Found at i:115175705 original size:25 final size:24
Alignment explanation
Indices: 115175597--115175740 Score: 181
Period size: 23 Copynumber: 6.0 Consensus size: 24
115175587 CTGCTTTATC
*
115175597 ATATAACTGGAGGCCT-AGCCTCTTT
1 ATATAACTGG-GGCATAAGCC-CTTT
115175622 -TAATAACTGGGGCA-AAGCCCTTT
1 AT-ATAACTGGGGCATAAGCCCTTT
*
115175645 TTAATAACTGGGGCATAAGCCCTTT
1 AT-ATAACTGGGGCATAAGCCCTTT
115175670 A-ATAACTGGGGCATAAGCCCTTT
1 ATATAACTGGGGCATAAGCCCTTT
*
115175693 ATCATAACTGGGGCGTAAGCCCTTT
1 AT-ATAACTGGGGCATAAGCCCTTT
115175718 A-ATAACTGGGGCATAAGCCCTTT
1 ATATAACTGGGGCATAAGCCCTTT
115175741 TGCACTTCCT
Statistics
Matches: 109, Mismatches: 4, Indels: 14
0.86 0.03 0.11
Matches are distributed among these distances:
23 48 0.44
24 22 0.20
25 39 0.36
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATATAACTGGGGCATAAGCCCTTT
Found at i:115175818 original size:20 final size:20
Alignment explanation
Indices: 115175795--115175877 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
115175785 AAACATCTCG
*
115175795 TGTGCATATCGTACATATCA
1 TGTGCATATCATACATATCA
*
115175815 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
115175835 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
115175855 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
115175875 TGT
1 TGT
115175878 TTATCAAAAT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 60 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:115175822 original size:11 final size:11
Alignment explanation
Indices: 115175795--115175866 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
115175785 AAACATCTCG
115175795 TGTGCATATC-
1 TGTGCATATCA
*
115175805 -GTACATATCA
1 TGTGCATATCA
115175815 TGTGCATATCA
1 TGTGCATATCA
* *
115175826 --TACATGTCA
1 TGTGCATATCA
115175835 TGTGCATATCA
1 TGTGCATATCA
*
115175846 --TACATATCA
1 TGTGCATATCA
115175855 TGTGCATATCA
1 TGTGCATATCA
115175866 T
1 T
115175867 ACATATCATG
Statistics
Matches: 48, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
9 23 0.48
11 25 0.52
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:115175874 original size:9 final size:9
Alignment explanation
Indices: 115175799--115175875 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
115175789 ATCTCGTGTG
*
115175799 CATATCGTA
1 CATATCATA
*
115175808 CATATCATGTG
1 CATATCA--TA
115175819 CATATCATA
1 CATATCATA
* *
115175828 CATGTCATGTG
1 CATATCA--TA
115175839 CATATCATA
1 CATATCATA
*
115175848 CATATCATGTG
1 CATATCA--TA
115175859 CATATCATA
1 CATATCATA
115175868 CATATCAT
1 CATATCAT
115175876 GTTTATCAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
9 30 0.57
11 23 0.43
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:115182954 original size:23 final size:23
Alignment explanation
Indices: 115182900--115183020 Score: 181
Period size: 23 Copynumber: 5.1 Consensus size: 23
115182890 CCTAGCCTCT
115182900 TTTAATAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
115182922 TTTTTAATAACTGGGGCATAAGCCC
1 --TTTAATAACTGGGGCATAAGCCC
115182947 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
115182970 TTTATCATAACTGGGGCGTAAGCCC
1 TTTA--ATAACTGGGGCATAAGCCC
*
115182995 TTTAATAACTGGGGCATAAACCC
1 TTTAATAACTGGGGCATAAGCCC
115183018 TTT
1 TTT
115183021 TGCACTTCCT
Statistics
Matches: 91, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
23 47 0.52
24 16 0.18
25 28 0.31
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:115182982 original size:48 final size:48
Alignment explanation
Indices: 115182900--115183020 Score: 199
Period size: 48 Copynumber: 2.5 Consensus size: 48
115182890 CCTAGCCTCT
*
115182900 TTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTATAATAACTGGGGCATAAGCCC
* *
115182947 TTTAATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTATAATAACTGGGGCATAAGCCC
*
115182995 TTTAATAACTGGGGCATAAACCCTTT
1 TTTAATAACTGGGGCATAAGCCCTTT
115183021 TGCACTTCCT
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
47 16 0.23
48 53 0.77
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (48 bp):
TTTAATAACTGGGGCATAAGCCCTTTATAATAACTGGGGCATAAGCCC
Found at i:115182985 original size:25 final size:24
Alignment explanation
Indices: 115182877--115183020 Score: 172
Period size: 23 Copynumber: 6.0 Consensus size: 24
115182867 CTGCTTTATC
*
115182877 ATATAACTGGAGGCCT-AGCCTCTTT
1 ATATAACTGG-GGCATAAGCC-CTTT
115182902 -TAATAACTGGGGCA-AAGCCCTTT
1 AT-ATAACTGGGGCATAAGCCCTTT
*
115182925 TTAATAACTGGGGCATAAGCCCTTT
1 AT-ATAACTGGGGCATAAGCCCTTT
115182950 A-ATAACTGGGGCATAAGCCCTTT
1 ATATAACTGGGGCATAAGCCCTTT
*
115182973 ATCATAACTGGGGCGTAAGCCCTTT
1 AT-ATAACTGGGGCATAAGCCCTTT
*
115182998 A-ATAACTGGGGCATAAACCCTTT
1 ATATAACTGGGGCATAAGCCCTTT
115183021 TGCACTTCCT
Statistics
Matches: 108, Mismatches: 5, Indels: 14
0.85 0.04 0.11
Matches are distributed among these distances:
23 47 0.44
24 22 0.20
25 39 0.36
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATATAACTGGGGCATAAGCCCTTT
Found at i:115183097 original size:20 final size:20
Alignment explanation
Indices: 115183074--115183156 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
115183064 TGAACATCTC
*
115183074 TGTGCATATCGTACATATCA
1 TGTGCATATCATACATATCA
*
115183094 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
115183114 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
115183134 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
115183154 TGT
1 TGT
115183157 TTATCAAAAT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 60 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:115183103 original size:11 final size:11
Alignment explanation
Indices: 115183074--115183145 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
115183064 TGAACATCTC
115183074 TGTGCATATC-
1 TGTGCATATCA
*
115183084 -GTACATATCA
1 TGTGCATATCA
115183094 TGTGCATATCA
1 TGTGCATATCA
* *
115183105 --TACATGTCA
1 TGTGCATATCA
115183114 TGTGCATATCA
1 TGTGCATATCA
*
115183125 --TACATATCA
1 TGTGCATATCA
115183134 TGTGCATATCA
1 TGTGCATATCA
115183145 T
1 T
115183146 ACATATCATG
Statistics
Matches: 48, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
9 23 0.48
11 25 0.52
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:115183153 original size:9 final size:9
Alignment explanation
Indices: 115183078--115183154 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
115183068 CATCTCTGTG
*
115183078 CATATCGTA
1 CATATCATA
*
115183087 CATATCATGTG
1 CATATCA--TA
115183098 CATATCATA
1 CATATCATA
* *
115183107 CATGTCATGTG
1 CATATCA--TA
115183118 CATATCATA
1 CATATCATA
*
115183127 CATATCATGTG
1 CATATCA--TA
115183138 CATATCATA
1 CATATCATA
115183147 CATATCAT
1 CATATCAT
115183155 GTTTATCAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
9 30 0.57
11 23 0.43
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:115187959 original size:46 final size:45
Alignment explanation
Indices: 115187820--115188038 Score: 185
Period size: 46 Copynumber: 4.7 Consensus size: 45
115187810 TATCCGTGCT
* * *
115187820 GATGCCATGTCCCAGACATGGTCTTACACT-G-AC-ACATCTCATAGTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTA-ATCTTAT-GCC
* * *
115187866 GATGCATGTCCCAGACATGTCTTACACTAGCT-TACGTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTA-ATCT-TATGCC
*
115187912 GATGCATGTCTCAGACATGTCTTACACTAGCTCTAATCTTAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTAATCTT-ATGCC
** * * * ** *
115187958 GATGTCATGTCCTGGACATGGTCTTACATTGGCTCTTATAATATGGTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTAATCTTAT-GCC
115188006 GATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTC
115188039 ACACAAGTGA
Statistics
Matches: 142, Mismatches: 22, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
44 10 0.07
45 15 0.11
46 66 0.46
47 28 0.20
48 23 0.16
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTAATCTTATGCC
Found at i:115191062 original size:38 final size:38
Alignment explanation
Indices: 115191019--115191093 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
115191009 TTCTTTGCTT
115191019 CTATTATTGTTTTTTTTATTTCCAAATGAACATTGAAA
1 CTATTATTGTTTTTTTTATTTCCAAATGAACATTGAAA
115191057 CTATTATTGTTTTTTTTATTTCCAAATGAACATTGAA
1 CTATTATTGTTTTTTTTATTTCCAAATGAACATTGAA
115191094 CCTAAGAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.51
Consensus pattern (38 bp):
CTATTATTGTTTTTTTTATTTCCAAATGAACATTGAAA
Done.