Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 367 of 433
Found at i:115191327 original size:19 final size:20
Alignment explanation
Indices: 115191289--115191327 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
115191279 TATTCTCGCC
* *
115191289 ATTTAATAGATTTTATTTTG
1 ATTTAATAGATATAATTTTG
115191309 ATTTAAT-GATATAATTTTG
1 ATTTAATAGATATAATTTTG
115191328 TTTCGGGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.56
Consensus pattern (20 bp):
ATTTAATAGATATAATTTTG
Found at i:115191367 original size:59 final size:59
Alignment explanation
Indices: 115191260--115191371 Score: 170
Period size: 59 Copynumber: 1.9 Consensus size: 59
115191250 ACGTAATAAA
* * * *
115191260 ATAATTTTGTTTCGGGATTTATTCTCGCCATTTAATAGATTTTATTTTGATTTAATGAT
1 ATAATTTTGTTTCGGGATTTAATCTCGCCATTTAATAAAATTGATTTTGATTTAATGAT
* *
115191319 ATAATTTTGTTTCGGGATTTAATCTTGCCATTTAATAAAATTGGTTTTGATTT
1 ATAATTTTGTTTCGGGATTTAATCTCGCCATTTAATAAAATTGATTTTGATTT
115191372 TATTTCAGAA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 47 1.00
ACGTcount: A:0.26, C:0.08, G:0.14, T:0.52
Consensus pattern (59 bp):
ATAATTTTGTTTCGGGATTTAATCTCGCCATTTAATAAAATTGATTTTGATTTAATGAT
Found at i:115195029 original size:27 final size:27
Alignment explanation
Indices: 115194994--115195045 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
115194984 TATTTCACAA
*
115194994 TTTAATTATA-AATTATTCTATTTATAT
1 TTTAATTATATAAATATT-TATTTATAT
*
115195021 TTTATTTATATAAATATTTATTTAT
1 TTTAATTATATAAATATTTATTTAT
115195046 GTTTATCTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 16 0.73
28 6 0.27
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (27 bp):
TTTAATTATATAAATATTTATTTATAT
Found at i:115198353 original size:47 final size:47
Alignment explanation
Indices: 115198295--115198416 Score: 201
Period size: 47 Copynumber: 2.6 Consensus size: 47
115198285 GCATTGGCAC
115198295 TAAGACAAGGATACTATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACTATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
115198342 TAAGACAAGGATACCATGTAAGACCATCTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACTATGTAAGACCATGTTTGGAACATGGCATTTGG
*
115198389 TAAGATAAGGATA-TCATGTAAGACCATG
1 TAAGACAAGGATACT-ATGTAAGACCATG
115198417 CCAAGGCATG
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACTATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:115198524 original size:55 final size:54
Alignment explanation
Indices: 115198403--115198806 Score: 246
Period size: 55 Copynumber: 7.5 Consensus size: 54
115198393 ATAAGGATAT
* * * * *
115198403 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC-AAGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAAGCAAAGG-TAC
* * * *
115198457 CATGTAATACCATGTCAAGACATGGCATTGATGAGTTACTATAAAGCAAATGTCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAAGCAAAGGTAC
* * *
115198512 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-AT-AAG-ACAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAAGCAAAGG-TAC
**** * *** * *
115198564 CATGTAAGACCATGTTTGGAACATGACATT--TG-GTAAGAT-AAG--GATGT--
1 CATGTAAGACCATGCCAAG-ACATGGCATTGATGAGTTCTATAAAGCAAAGGTAC
* * * * *
115198611 CATGTAAGACCATGCCAAGGCATGGCATTGATAACTTCTATAAAGC-AAGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAAGCAAAGG-TAC
* * *
115198665 CATGTAAGAAATAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
1 CA--T--G---TAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAAGCAAAGGTAC
* * *
115198727 CATGTAAGACCATGCCAAGGCATGGCATTGGA-GAGTTC-ATTAGGC-AAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCATT-GATGAGTTCTATAAAGCAAAGG-TAC
* *
115198780 CACGTAAGACCATGTCAAGACATGGCA
1 CATGTAAGACCATGCCAAGACATGGCA
115198807 ATGGTAAGTT
Statistics
Matches: 271, Mismatches: 55, Indels: 49
0.72 0.15 0.13
Matches are distributed among these distances:
46 8 0.03
47 15 0.06
48 1 0.00
49 4 0.01
50 7 0.03
51 12 0.04
52 24 0.09
53 42 0.15
54 37 0.14
55 69 0.25
56 6 0.02
58 2 0.01
60 1 0.00
61 29 0.11
62 10 0.04
63 4 0.01
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.23
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAAGCAAAGGTAC
Found at i:115198576 original size:208 final size:211
Alignment explanation
Indices: 115198342--115198792 Score: 737
Period size: 208 Copynumber: 2.1 Consensus size: 211
115198332 TGGCATTTGG
*
115198342 TAAGACAAGGATACCATGTAAGACCATCTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATCTTTGGAACATGACATTTGGTAAGATAAGGATATCATG
* *
115198407 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGT-AAT-ACCAT
66 TAAGACCATGCCAAGGCATGGCATTGATAACTTCTATAAAGCAAGGAAATCATGTAAATAACCAT
*
115198470 GTCAAGACATGGCATTGATGAGTTACTATAAAGCAAATGTCCCATGTAAGACCATGCCAAGGCAT
131 GTCAAGACATGGCATTGATGAGTTACTATAAAGCAAAGGTCCCATGTAAGACCATGCCAAGGCAT
*
115198535 GGCATTGGTGAGTTCA
196 GGCATTGGAGAGTTCA
* *
115198551 TAAGAC-AGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGATAAGGATGTCATG
1 TAAGACAAGGATACCATGTAAGACCATCTTTGGAACATGACATTTGGTAAGATAAGGATATCATG
115198615 TAAGACCATGCCAAGGCATGGCATTGATAACTTCTATAAAGCAAGGAAATCATGTAAGAAATAAG
66 TAAGACCATGCCAAGGCATGGCATTGATAACTTCTATAAAGCAAGGAAATCATGT---AAAT-A-
*
115198680 ACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGCCAA
126 ACCATGTCAAGACATGGCATTGATGAGTTACTATAAAGCAAAGGTCCCATGTAAGACCATGCCAA
115198745 GGCATGGCATTGGAGAGTTCA
191 GGCATGGCATTGGAGAGTTCA
* * *
115198766 TTAGGCAAGGATACCACGTAAGACCAT
1 TAAGACAAGGATACCATGTAAGACCAT
115198793 GTCAAGACAT
Statistics
Matches: 223, Mismatches: 11, Indels: 9
0.92 0.05 0.04
Matches are distributed among these distances:
208 108 0.48
209 6 0.03
212 3 0.01
215 87 0.39
216 19 0.09
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (211 bp):
TAAGACAAGGATACCATGTAAGACCATCTTTGGAACATGACATTTGGTAAGATAAGGATATCATG
TAAGACCATGCCAAGGCATGGCATTGATAACTTCTATAAAGCAAGGAAATCATGTAAATAACCAT
GTCAAGACATGGCATTGATGAGTTACTATAAAGCAAAGGTCCCATGTAAGACCATGCCAAGGCAT
GGCATTGGAGAGTTCA
Found at i:115198632 original size:99 final size:101
Alignment explanation
Indices: 115198342--115198673 Score: 384
Period size: 101 Copynumber: 3.2 Consensus size: 101
115198332 TGGCATTTGG
* *
115198342 TAAGACAAGGATACCATGTAAGACCATCTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATGTCATG
115198407 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* * * * *** ** *
115198443 TAAGGCAAGGAAATCATGTAATACCATGTCAAG-ACATGGCATTGATGAGTTACTATAAAGCAAA
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATT--TG-G-TAAGAT-AAG--GA
* *
115198507 TGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-A
59 TGT--CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
*
115198551 TAAGAC-AGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGATAAGGATGTCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATGTCATG
*
115198615 TAAGACCATGCCAAGGCATGGCATTGATAACTTCTA
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* *
115198651 TAA-AGCAAGGAAATCATGTAAGA
1 TAAGA-CAAGGATACCATGTAAGA
115198674 AATAAGACCA
Statistics
Matches: 188, Mismatches: 30, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
99 36 0.19
100 15 0.08
101 43 0.23
102 2 0.01
103 4 0.02
104 8 0.04
105 4 0.02
106 2 0.01
107 23 0.12
108 15 0.08
109 36 0.19
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (101 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATGTCATG
TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
Found at i:115198787 original size:53 final size:55
Alignment explanation
Indices: 115198676--115198806 Score: 171
Period size: 53 Copynumber: 2.4 Consensus size: 55
115198666 ATGTAAGAAA
* *
115198676 TAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATG
1 TAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTACCACG
* * *
115198731 TAAGACCATGCCAAGGCATGGCATTGGA-GAGTT-C-ATTAGGC-AAGGATACCACG
1 TAAGACCATGTCAAGACATGGCATT-GATGAGTTACTATAAGGCAAAGG-TACCACG
115198784 TAAGACCATGTCAAGACATGGCA
1 TAAGACCATGTCAAGACATGGCA
115198807 ATGGTAAGTT
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
52 4 0.06
53 32 0.48
54 1 0.01
55 28 0.42
56 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (55 bp):
TAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTACCACG
Found at i:115199046 original size:9 final size:9
Alignment explanation
Indices: 115199029--115199065 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
115199019 TGAGTTTTCG
115199029 AATTCGAAT
1 AATTCGAAT
*
115199038 AACTCGAAT
1 AATTCGAAT
*
115199047 AATTCGAAC
1 AATTCGAAT
115199056 AATTCGAAT
1 AATTCGAAT
115199065 A
1 A
115199066 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.46, C:0.16, G:0.11, T:0.27
Consensus pattern (9 bp):
AATTCGAAT
Found at i:115199141 original size:30 final size:29
Alignment explanation
Indices: 115199107--115199172 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
115199097 AACTTCCAAA
* *
115199107 CCTTTTTACTTTTTCCTCAAAACTTTTACT
1 CCTTTTTAATTTCTCC-CAAAACTTTTACT
** *
115199137 CCTTTCCAATTTCTCCCAAAACTTTTTCT
1 CCTTTTTAATTTCTCCCAAAACTTTTACT
*
115199166 CCCTTTT
1 CCTTTTT
115199173 CCATCCCGAC
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
29 16 0.57
30 12 0.43
ACGTcount: A:0.18, C:0.32, G:0.00, T:0.50
Consensus pattern (29 bp):
CCTTTTTAATTTCTCCCAAAACTTTTACT
Found at i:115200304 original size:25 final size:25
Alignment explanation
Indices: 115200276--115200329 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
115200266 GAGATGTTGC
115200276 AGGTATGTAAGCAAGCTATTAAGTA
1 AGGTATGTAAGCAAGCTATTAAGTA
115200301 AGGTATGTAAGCAAGCTATTAAGTA
1 AGGTATGTAAGCAAGCTATTAAGTA
115200326 AGGT
1 AGGT
115200330 GTCTTTTGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.39, C:0.07, G:0.26, T:0.28
Consensus pattern (25 bp):
AGGTATGTAAGCAAGCTATTAAGTA
Found at i:115212918 original size:40 final size:39
Alignment explanation
Indices: 115212873--115213080 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 39
115212863 CGGAATACAA
* *
115212873 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
115212913 CCGGATAGAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
115212953 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAAC-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
115212993 CCGGATGTAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
115213033 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACT-GCACAAATGCCTTCGGGTCTTAGC
115213073 CCGGATAT
1 CCGGATAT
115213081 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACAACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:115213013 original size:80 final size:81
Alignment explanation
Indices: 115212873--115213078 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
115212863 CGGAATACAA
* * *
115212873 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACAACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACAACTAGCACAAAT
*
115212937 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
115212953 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACAACTAGCACAAA
*
115213016 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
115213033 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
115213079 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACAACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:115220426 original size:17 final size:19
Alignment explanation
Indices: 115220329--115220419 Score: 125
Period size: 19 Copynumber: 4.9 Consensus size: 19
115220319 ATAATCTTTA
*
115220329 ATGATATGCAATCTTAAAT
1 ATGATATGCAATCTTAGAT
* *
115220348 ATGATATACAATTTTAGAT
1 ATGATATGCAATCTTAGAT
115220367 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
115220384 ATGAT-TGCAATCTTAAAT
1 ATGATATGCAATCTTAGAT
115220402 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
115220420 AGATATGATT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.24
18 15 0.24
19 33 0.52
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:115221356 original size:21 final size:22
Alignment explanation
Indices: 115221330--115221380 Score: 88
Period size: 21 Copynumber: 2.4 Consensus size: 22
115221320 ATTTTTCATT
115221330 TGTCTAAATGCTTAAAATATC-
1 TGTCTAAATGCTTAAAATATCA
115221351 TGTCTAAATGCTTAAAATATCA
1 TGTCTAAATGCTTAAAATATCA
115221373 T-TCTAAAT
1 TGTCTAAAT
115221381 AGATTTTGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 28 0.97
22 1 0.03
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.39
Consensus pattern (22 bp):
TGTCTAAATGCTTAAAATATCA
Found at i:115228854 original size:23 final size:23
Alignment explanation
Indices: 115228824--115228868 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
115228814 TTTCTTTTTT
115228824 CTTTTTAAGTTTTTATTTATTTA
1 CTTTTTAAGTTTTTATTTATTTA
115228847 CTTTTTAAGTTTTTATTTATTT
1 CTTTTTAAGTTTTTATTTATTT
115228869 TTATTTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.71
Consensus pattern (23 bp):
CTTTTTAAGTTTTTATTTATTTA
Found at i:115228966 original size:14 final size:14
Alignment explanation
Indices: 115228938--115228975 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
115228928 TTTTTTAAAA
*
115228938 TTTTAAATA-TATT
1 TTTTAAAAATTATT
115228951 TTTT-AAAATTATT
1 TTTTAAAAATTATT
115228964 TTTTAAAAATTA
1 TTTTAAAAATTA
115228976 AATATTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 3 0.14
13 12 0.55
14 7 0.32
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
TTTTAAAAATTATT
Found at i:115228967 original size:35 final size:33
Alignment explanation
Indices: 115228911--115228991 Score: 108
Period size: 34 Copynumber: 2.4 Consensus size: 33
115228901 TATATTTGAA
* * *
115228911 ATATTTTATAATATTAATTTTTTAAAATTTTAAAT
1 ATATTTTTTAAAATT-ATTTTTTAAAA-ATTAAAT
115228946 ATATTTTTTAAAATTATTTTTTAAAAATTAAAT
1 ATATTTTTTAAAATTATTTTTTAAAAATTAAAT
115228979 ATTATTTTTTAAA
1 A-TATTTTTTAAA
115228992 TTTTAAATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
33 7 0.17
34 22 0.52
35 13 0.31
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (33 bp):
ATATTTTTTAAAATTATTTTTTAAAAATTAAAT
Found at i:115229011 original size:21 final size:21
Alignment explanation
Indices: 115228951--115229009 Score: 84
Period size: 21 Copynumber: 2.8 Consensus size: 21
115228941 TAAATATATT
115228951 TTTTAAA-ATTATTTTTTAAA
1 TTTTAAATATTATTTTTTAAA
**
115228971 AATTAAATATTATTTTTTAAA
1 TTTTAAATATTATTTTTTAAA
115228992 TTTTAAATATATATTTTT
1 TTTTAAATAT-TATTTTT
115229010 AATAAATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.15
21 21 0.64
22 7 0.21
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTAAATATTATTTTTTAAA
Found at i:115229019 original size:21 final size:22
Alignment explanation
Indices: 115228956--115229016 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 22
115228946 ATATTTTTTA
115228956 AAAT-TAT-TTTTTAA-AAATT
1 AAATATATATTTTTAATAAATT
115228975 AAATAT-TATTTTT--TAAATTTT
1 AAATATATATTTTTAATAAA--TT
115228996 AAATATATATTTTTAATAAAT
1 AAATATATATTTTTAATAAAT
115229017 AAAACATTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 13
0.72 0.00 0.28
Matches are distributed among these distances:
19 8 0.24
20 6 0.18
21 8 0.24
22 8 0.24
24 4 0.12
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
AAATATATATTTTTAATAAATT
Found at i:115229103 original size:11 final size:11
Alignment explanation
Indices: 115229071--115229141 Score: 58
Period size: 11 Copynumber: 6.5 Consensus size: 11
115229061 TTTTTTTATA
115229071 ATATTTTAAATGT
1 ATATTTTAAA--T
*
115229084 ATATCTTAAAT
1 ATATTTTAAAT
115229095 ATATTTT-AAT
1 ATATTTTAAAT
* *
115229105 TTGTTTTATAAT
1 ATATTTTA-AAT
115229117 -T-TTTTAAAT
1 ATATTTTAAAT
*
115229126 ATTTTTTAAAT
1 ATATTTTAAAT
115229137 ATATT
1 ATATT
115229142 ATTTTTAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
9 3 0.06
10 14 0.29
11 20 0.41
12 3 0.06
13 9 0.18
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (11 bp):
ATATTTTAAAT
Found at i:115229136 original size:42 final size:42
Alignment explanation
Indices: 115229060--115229141 Score: 112
Period size: 44 Copynumber: 1.9 Consensus size: 42
115229050 TAAATTTATT
115229060 ATTTTTTTATAATATTTTAAATGTATATCTTAAATATATTTTA
1 ATTTTTTTATAATATTTTAAA-GTATATCTTAAATATATTTTA
* * *
115229103 ATTTGTTTTATAATTTTTTAAA-TATTTTTTAAATATATT
1 ATTT-TTTTATAATATTTTAAAGTATATCTTAAATATATT
115229142 ATTTTTAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
42 15 0.43
43 4 0.11
44 16 0.46
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.61
Consensus pattern (42 bp):
ATTTTTTTATAATATTTTAAAGTATATCTTAAATATATTTTA
Found at i:115229225 original size:51 final size:51
Alignment explanation
Indices: 115229064--115229238 Score: 131
Period size: 52 Copynumber: 3.3 Consensus size: 51
115229054 TTTATTATTT
* * **
115229064 TTTTATAATATTTTAAATGTATATCTTAAATATATTTTAATTTGT-TTTATAA
1 TTTTATAATATTTTAAATGTATATTTTTAATAT-TTTTAATTT-TAAATATAA
* * * * * * * *
115229116 TTTTTTAAATATTTTTTAAATATATTATTTTTAAAAATATGAACTTTCAAAT-TTA
1 TTTTAT-AATA--TTTTAAATGTA-TATTTTTAATATTTTTAA-TTTTAAATATAA
*
115229171 TTTTATAATATTTTAAATGCATATTTTTAATATTTTTAATTTTAAATATAA
1 TTTTATAATATTTTAAATGTATATTTTTAATATTTTTAATTTTAAATATAA
115229222 TTTTTATAA-ATTATTAA
1 -TTTTATAATATT-TTAA
115229239 TTTTTTAAAT
Statistics
Matches: 93, Mismatches: 21, Indels: 18
0.70 0.16 0.14
Matches are distributed among these distances:
50 7 0.08
51 19 0.20
52 26 0.28
53 4 0.04
54 4 0.04
55 21 0.23
56 12 0.13
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (51 bp):
TTTTATAATATTTTAAATGTATATTTTTAATATTTTTAATTTTAAATATAA
Found at i:115229247 original size:16 final size:16
Alignment explanation
Indices: 115229210--115229252 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
115229200 ATATTTTTAA
115229210 TTTTAAA-TA-TAATT
1 TTTTAAATTATTAATT
115229224 TTTATAAATTATTAATT
1 TTT-TAAATTATTAATT
115229241 TTTTAAATTATT
1 TTTTAAATTATT
115229253 TTAAAAGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 3 0.12
15 4 0.15
16 11 0.42
17 8 0.31
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTTAAATTATTAATT
Found at i:115229255 original size:107 final size:106
Alignment explanation
Indices: 115229060--115229263 Score: 247
Period size: 107 Copynumber: 1.9 Consensus size: 106
115229050 TAAATTTATT
* **
115229060 ATTTTTTTATAATATTTTAAATGTATATCTTAAATATATTTTAATTTGTTTTATAATTTTTTAAA
1 ATTTTTTTATAATATTTTAAATGCATATCTTAAATATATTTTAATTTGTAATATAATTTTTTAAA
*
115229125 TATTTTTTAAATATATTATTTTTAAAA-ATATGAACTTTCAA
66 TATTTTTT-AATAAATTATTTTTAAAAGATATGAACTTTCAA
* *
115229166 ATTTATTTTATAATATTTTAAATGCATATTTTTAATAT-TTTTAATTT-TAAATATAATTTTTAT
1 ATTT-TTTTATAATATTTTAAATGCATATCTTAAATATATTTTAATTTGT-AATATAATTTTT-T
*
115229229 AAATTATTAATTTT-TTAAATTA-TTTTAAAAGATAT
63 AAA-TATT--TTTTAATAAATTATTTTTAAAAGATAT
115229264 TCAAATATTT
Statistics
Matches: 84, Mismatches: 7, Indels: 12
0.82 0.07 0.12
Matches are distributed among these distances:
105 1 0.01
106 23 0.27
107 42 0.50
108 14 0.17
110 4 0.05
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (106 bp):
ATTTTTTTATAATATTTTAAATGCATATCTTAAATATATTTTAATTTGTAATATAATTTTTTAAA
TATTTTTTAATAAATTATTTTTAAAAGATATGAACTTTCAA
Found at i:115229295 original size:21 final size:21
Alignment explanation
Indices: 115229242--115229309 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 21
115229232 TTATTAATTT
* **
115229242 TTTAAATTATTTTAAAAGATA
1 TTTAAATTTTTTTAAATTATA
*
115229263 TTCAAATATTTTTTAAATTATA
1 TTTAAAT-TTTTTTAAATTATA
**
115229285 TTTAAATTTTTAAAAATTAATA
1 TTTAAATTTTTTTAAATT-ATA
115229307 TTT
1 TTT
115229310 TATTTCTGCC
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
21 15 0.39
22 23 0.61
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (21 bp):
TTTAAATTTTTTTAAATTATA
Found at i:115229314 original size:21 final size:20
Alignment explanation
Indices: 115229268--115229314 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
115229258 AGATATTCAA
*
115229268 ATATTTTTTAAATTATATTT
1 ATATTTTTAAAATTATATTT
*
115229288 AAATTTTTAAAAATTAATATTT
1 ATATTTTT-AAAATT-ATATTT
115229310 -TATTT
1 ATATTT
115229315 CTGCCACTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 7 0.32
21 9 0.41
22 6 0.27
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
ATATTTTTAAAATTATATTT
Found at i:115235883 original size:27 final size:25
Alignment explanation
Indices: 115235846--115235959 Score: 120
Period size: 27 Copynumber: 4.3 Consensus size: 25
115235836 AGCATGGCTG
*
115235846 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTG-CAGAGCCA
115235872 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GT-GCAGAGCCA
*
115235900 CCAGAACAGATATATATGCAGAGCCA
1 CCAGAACAGATA-ATGTGCAGAGCCA
* * *
115235926 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGT-GCAGAGCCA
115235953 CCAGAAC
1 CCAGAAC
115235960 GCTTCCTCCA
Statistics
Matches: 76, Mismatches: 7, Indels: 9
0.83 0.08 0.10
Matches are distributed among these distances:
26 28 0.37
27 31 0.41
28 16 0.21
29 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.17
Consensus pattern (25 bp):
CCAGAACAGATAATGTGCAGAGCCA
Found at i:115235905 original size:54 final size:53
Alignment explanation
Indices: 115235846--115235959 Score: 158
Period size: 53 Copynumber: 2.1 Consensus size: 53
115235836 AGCATGGCTG
* *
115235846 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATATG-CAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * *
115235900 CCAGAACAGATATATATGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATATGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
115235953 CCAGAAC
1 CCAGAAC
115235960 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
53 25 0.46
54 25 0.46
55 4 0.07
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.17
Consensus pattern (53 bp):
CCAGAACAGATATATATGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:115237592 original size:15 final size:14
Alignment explanation
Indices: 115237562--115237601 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
115237552 ATACAAAAGA
115237562 CATGAA-ATTCTTAT
1 CATGAACATT-TTAT
115237576 CATGAAACATTTTAT
1 CATG-AACATTTTAT
115237591 CATGAACATTT
1 CATGAACATTT
115237602 ACCTAACCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 11 0.46
15 10 0.42
16 3 0.12
ACGTcount: A:0.38, C:0.15, G:0.07, T:0.40
Consensus pattern (14 bp):
CATGAACATTTTAT
Found at i:115237619 original size:25 final size:26
Alignment explanation
Indices: 115237587--115237743 Score: 252
Period size: 25 Copynumber: 6.2 Consensus size: 26
115237577 ATGAAACATT
115237587 TTATCAT-GAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
115237612 TTATCAT-GAACATTTACCTAA-CCA
1 TTATCATGGAACATTTACCTAACCCA
115237636 TTATCATGGAACATTTACCTAA-CCA
1 TTATCATGGAACATTTACCTAACCCA
*
115237661 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
115237687 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
115237713 TTATCAT-GAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
115237738 TTATCA
1 TTATCA
115237744 ATTTGTATCA
Statistics
Matches: 129, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
24 10 0.08
25 84 0.65
26 35 0.27
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:115237709 original size:51 final size:50
Alignment explanation
Indices: 115237587--115237743 Score: 273
Period size: 51 Copynumber: 3.1 Consensus size: 50
115237577 ATGAAACATT
115237587 TTATCAT-GAACATTTACCTAACCCATTATCATGAACATTTACCTAACC-A
1 TTATCATGGAACATTTACCTAA-CCATTATCATGAACATTTACCTAACCTA
115237636 TTATCATGGAACATTTACCTAACCATTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCATTATCAT-GAACATTTACCTAACCTA
115237687 TTATCATGGAACATTTACCTAACCTATTATCATGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACC-ATTATCATGAACATTTACCTAACCTA
115237738 TTATCA
1 TTATCA
115237744 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 0, Indels: 6
0.95 0.00 0.05
Matches are distributed among these distances:
49 17 0.16
50 30 0.29
51 49 0.47
52 8 0.08
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.34
Consensus pattern (50 bp):
TTATCATGGAACATTTACCTAACCATTATCATGAACATTTACCTAACCTA
Found at i:115241737 original size:27 final size:26
Alignment explanation
Indices: 115241701--115241814 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
115241691 AGTATGGCTG
* *
115241701 CCAGAACAGATAATATGGCAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
115241727 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
115241755 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
115241782 CCAGATCAGAT-ATTTGTGCATAGCCA
1 CCAGAACAGATAATGTG-GCAGAGCCA
115241808 CCAGAAC
1 CCAGAAC
115241815 GCTTCCTCCA
Statistics
Matches: 78, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
25 4 0.05
26 19 0.24
27 38 0.49
28 17 0.22
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:115241813 original size:53 final size:54
Alignment explanation
Indices: 115241701--115241814 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
115241691 AGTATGGCTG
*
115241701 CCAGAACAGATAATATGGCAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATATGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * *
115241755 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATATTTGT-GCATAGCCA
1 CCAGAACAGATA-ATATGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
115241808 CCAGAAC
1 CCAGAAC
115241815 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
53 15 0.28
54 21 0.39
55 18 0.33
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATATGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:115243467 original size:26 final size:26
Alignment explanation
Indices: 115243429--115243616 Score: 322
Period size: 26 Copynumber: 7.2 Consensus size: 26
115243419 AATGAAATTC
* * *
115243429 TTATCATGAAACACTTACCTAAGCTA
1 TTATCATGGAACATTTACCTAACCTA
*
115243455 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
115243481 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
115243507 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
115243533 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
115243559 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
**
115243585 TTATCATAAAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
115243611 TTATCA
1 TTATCA
115243617 ATTTGTATCA
Statistics
Matches: 155, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 155 1.00
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:115255578 original size:46 final size:46
Alignment explanation
Indices: 115255518--115255745 Score: 359
Period size: 46 Copynumber: 5.0 Consensus size: 46
115255508 TTTGACATGA
* * * * * *
115255518 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
115255564 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
115255610 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
115255656 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
115255702 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATTTCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
115255746 AGAGCACACT
Statistics
Matches: 171, Mismatches: 10, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
45 4 0.02
46 167 0.98
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:115258219 original size:29 final size:31
Alignment explanation
Indices: 115258168--115258236 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 31
115258158 CCACCCTTAA
* * *
115258168 AATATTTTCACTATTAGTCCTTCAACTTTT-
1 AATATTTACACTATTAATCCTTCAAATTTTG
*
115258198 CATATTTACACT-TTAATCCTTCAAATTTTG
1 AATATTTACACTATTAATCCTTCAAATTTTG
115258228 AATATTTAC
1 AATATTTAC
115258237 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
29 15 0.45
30 18 0.55
ACGTcount: A:0.30, C:0.19, G:0.03, T:0.48
Consensus pattern (31 bp):
AATATTTACACTATTAATCCTTCAAATTTTG
Found at i:115267506 original size:27 final size:27
Alignment explanation
Indices: 115267475--115267528 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
115267465 GTTTTGGAGG
115267475 AAGATTTTTCAGAAAAGCCTCCACATA
1 AAGATTTTTCAGAAAAGCCTCCACATA
115267502 AAGATTTTTCAGAAAAGCCTCCACATA
1 AAGATTTTTCAGAAAAGCCTCCACATA
115267529 TACTTACAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.26
Consensus pattern (27 bp):
AAGATTTTTCAGAAAAGCCTCCACATA
Found at i:115274963 original size:24 final size:24
Alignment explanation
Indices: 115274931--115275001 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
115274921 CTGTCAGGAG
115274931 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
115274955 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
115274979 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
115275002 GGAAATCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:115275013 original size:48 final size:48
Alignment explanation
Indices: 115274931--115275024 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
115274921 CTGTCAGGAG
** * *
115274931 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATCAAGGGAT
115274979 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATCAAGG
115275025 AACAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.82
49 4 0.10
ACGTcount: A:0.35, C:0.04, G:0.37, T:0.23
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATCAAGGGAT
Found at i:115276305 original size:25 final size:25
Alignment explanation
Indices: 115276270--115276318 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
115276260 CTTATGTATG
*
115276270 GAAAATTACC-ATGATACCCCTAGGT
1 GAAAATGACCAAT-ATACCCCTAGGT
*
115276295 GAAAATGACCAATATGCCCCTAGG
1 GAAAATGACCAATATACCCCTAGG
115276319 GTTAATTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.20
Consensus pattern (25 bp):
GAAAATGACCAATATACCCCTAGGT
Found at i:115276462 original size:27 final size:28
Alignment explanation
Indices: 115276422--115276533 Score: 144
Period size: 27 Copynumber: 4.1 Consensus size: 28
115276412 AGGAAGCGTC
*
115276422 CTGGTGGCTATGCCACAATTATCT-TAT
1 CTGGTGGCTCTGCCACAATTATCTGTAT
115276449 CTGGTGGCTCTGCCACATATT-TCTGT-T
1 CTGGTGGCTCTGCCACA-ATTATCTGTAT
*
115276476 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTGTAT
* *
115276504 CTGGTGACTCTGTCAC-ATTATCTGT-T
1 CTGGTGGCTCTGCCACAATTATCTGTAT
115276530 CTGG
1 CTGG
115276534 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 4, Indels: 9
0.86 0.04 0.10
Matches are distributed among these distances:
26 8 0.10
27 50 0.65
28 19 0.25
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.38
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAATTATCTGTAT
Found at i:115276528 original size:54 final size:54
Alignment explanation
Indices: 115276422--115276533 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
115276412 AGGAAGCGTC
* *
115276422 CTGGTGGCTATGCCACAATTATCTTATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTTATCTGGTGACTCTGCCACATATATCTGTT
* * *
115276476 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-TATCTGGTGACTCTGCCACATATATCTGTT
115276530 CTGG
1 CTGG
115276534 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 33 0.63
55 19 0.37
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTTATCTGGTGACTCTGCCACATATATCTGTT
Found at i:115278118 original size:29 final size:29
Alignment explanation
Indices: 115278094--115278187 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
115278084 TCGCACACCC
*
115278094 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
115278123 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
115278152 AGTGCCATATATTTCCAGCAAGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
115278181 AGTGCCA
1 AGTGCCA
115278188 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:115278119 original size:58 final size:58
Alignment explanation
Indices: 115278057--115278187 Score: 165
Period size: 58 Copynumber: 2.3 Consensus size: 58
115278047 ATTTAAGCCC
* * * * *
115278057 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAA
* * **
115278115 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAA
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAA
115278173 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
115278188 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
58 62 0.98
59 1 0.02
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAA
Found at i:115282459 original size:11 final size:11
Alignment explanation
Indices: 115282445--115282475 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
115282435 AAAGTGTAGA
115282445 AAAACTAAGAG
1 AAAACTAAGAG
*
115282456 AAAACTTAGAG
1 AAAACTAAGAG
115282467 AAAACTAAG
1 AAAACTAAG
115282476 CCTAAAACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.61, C:0.10, G:0.16, T:0.13
Consensus pattern (11 bp):
AAAACTAAGAG
Found at i:115294267 original size:19 final size:19
Alignment explanation
Indices: 115294243--115294282 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
115294233 TATCTTTACC
115294243 TGCCACAATACGAATCTGG
1 TGCCACAATACGAATCTGG
115294262 TGCCACAATACGAATCTGG
1 TGCCACAATACGAATCTGG
115294281 TG
1 TG
115294283 TTGCGGTCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (19 bp):
TGCCACAATACGAATCTGG
Found at i:115295371 original size:17 final size:16
Alignment explanation
Indices: 115295342--115295396 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 16
115295332 TGAAGTTGGG
115295342 TTAAGAAAATAATTTAA
1 TTAA-AAAATAATTTAA
115295359 TTAAAAAATTAATTTAA
1 TTAAAAAA-TAATTTAA
115295376 TTAAACTAAATAA-TTAA
1 TTAAA--AAATAATTTAA
115295393 TTAA
1 TTAA
115295397 TTTATATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
16 4 0.11
17 25 0.71
18 3 0.09
19 3 0.09
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (16 bp):
TTAAAAAATAATTTAA
Found at i:115295376 original size:22 final size:21
Alignment explanation
Indices: 115295351--115295400 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
115295341 GTTAAGAAAA
*
115295351 TAATTTAATTAAAAAATTAATT
1 TAATTTAACTAAAAAATTAA-T
* *
115295373 TAATTAAACTAAATAATTAAT
1 TAATTTAACTAAAAAATTAAT
115295394 TAATTTA
1 TAATTTA
115295401 TATATATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
TAATTTAACTAAAAAATTAAT
Found at i:115300132 original size:47 final size:47
Alignment explanation
Indices: 115300078--115300171 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
115300068 GGGTCACAAG
*
115300078 TGGTACCTAAACTATTCTTATATTAGATATTTTACACAAAATGTTAT
1 TGGTACCTAAACTATTCTTATATTACATATTTTACACAAAATGTTAT
115300125 TGGTACCTAAACTATTCTTATATTACATATTTTACACAAAATGTTAT
1 TGGTACCTAAACTATTCTTATATTACATATTTTACACAAAATGTTAT
115300172 ATTTGTTAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (47 bp):
TGGTACCTAAACTATTCTTATATTACATATTTTACACAAAATGTTAT
Found at i:115303009 original size:17 final size:17
Alignment explanation
Indices: 115302987--115303020 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
115302977 TTAGAATTGG
115302987 ATTGAGAAAATTATTTA
1 ATTGAGAAAATTATTTA
*
115303004 ATTGAGAAATTTATTTA
1 ATTGAGAAAATTATTTA
115303021 TTTAAATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (17 bp):
ATTGAGAAAATTATTTA
Found at i:115309150 original size:43 final size:43
Alignment explanation
Indices: 115309095--115309312 Score: 183
Period size: 43 Copynumber: 5.1 Consensus size: 43
115309085 AAAATACCGG
*
115309095 TAAAGACCAGGACATTTAGCGGCGTTTTTATGAAAAACGCCGC
1 TAAAGACCAGGACATTTAGCGGCGTTTTTATAAAAAACGCCGC
* * ** *
115309138 TAAAGACAAGGACCTTTAGTAGCGCTTTTATAAAAAACGCCGC
1 TAAAGACCAGGACATTTAGCGGCGTTTTTATAAAAAACGCCGC
* * * * *
115309181 TAAATACCTGTACTTTTAGCGGCACTTTTT-TAAAAAACGCCGC
1 TAAAGACCAGGACATTTAGCGGC-GTTTTTATAAAAAACGCCGC
* *** ** *
115309224 TAGAGACCTTTAC-TTATAGCGATGCTTTTATAAAAAACGCCGC
1 TAAAGACCAGGACATT-TAGCGGCGTTTTTATAAAAAACGCCGC
* * *
115309267 TAAAGACCTA-TACTTTTAGCGGCACTTTTT-TAAAAAACGCCGC
1 TAAAGACC-AGGACATTTAGCGGC-GTTTTTATAAAAAACGCCGC
115309310 TAA
1 TAA
115309313 TTTGCCCAGT
Statistics
Matches: 141, Mismatches: 28, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
42 6 0.04
43 125 0.89
44 10 0.07
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (43 bp):
TAAAGACCAGGACATTTAGCGGCGTTTTTATAAAAAACGCCGC
Found at i:115309218 original size:86 final size:84
Alignment explanation
Indices: 115309109--115309312 Score: 259
Period size: 86 Copynumber: 2.4 Consensus size: 84
115309099 GACCAGGACA
* *
115309109 TTTAGCGGC-GTTTTTATGAAAAACGCCGCTAAAGACAAGGACCTTTAGTAGC-GCTTTTATAAA
1 TTTAGCGGCACTTTTT-TAAAAAACGCCGCTAAAGACAAGGA-C-TTA-TAGCAGCTTTTATAAA
* *
115309172 AAACGCCGCTAAATACCTGTACT
62 AAACGCCGCTAAAGACCTATACT
* ****
115309195 TTTAGCGGCACTTTTTTAAAAAACGCCGCTAGAGACCTTTACTTATAGCGATGCTTTTATAAAAA
1 TTTAGCGGCACTTTTTTAAAAAACGCCGCTAAAGACAAGGACTTATAGC-A-GCTTTTATAAAAA
115309260 ACGCCGCTAAAGACCTATACT
64 ACGCCGCTAAAGACCTATACT
115309281 TTTAGCGGCACTTTTTTAAAAAACGCCGCTAA
1 TTTAGCGGCACTTTTTTAAAAAACGCCGCTAA
115309313 TTTGCCCAGT
Statistics
Matches: 104, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
83 4 0.04
84 3 0.03
85 1 0.01
86 91 0.88
87 5 0.05
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (84 bp):
TTTAGCGGCACTTTTTTAAAAAACGCCGCTAAAGACAAGGACTTATAGCAGCTTTTATAAAAAAC
GCCGCTAAAGACCTATACT
Found at i:115310220 original size:18 final size:18
Alignment explanation
Indices: 115310188--115310225 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
115310178 TACAATATAG
115310188 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
115310207 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
115310224 TA
1 TA
115310226 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:115316328 original size:473 final size:473
Alignment explanation
Indices: 115315347--115316594 Score: 2441
Period size: 473 Copynumber: 2.6 Consensus size: 473
115315337 TTATACAAAT
115315347 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
1 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
115315412 AATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
66 AATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
115315477 TAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTGAATTTTTTAAGATTCATCATACGTG
131 TAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTGAATTTTTTAAGATTCATCATACGTG
115315542 GCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTT
196 GCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTT
115315607 TCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATAT
261 TCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATAT
115315672 ATGGTAATAAAATTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAAC
326 ATGGTAATAAAATTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAAC
115315737 CAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATACTATTTTGATAAA
391 CAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATACTATTTTGATAAA
115315802 AATTATTAACTTTTAAAG
456 AATTATTAACTTTTAAAG
115315820 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
1 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
115315885 AATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
66 AATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
115315950 TAAATATTCAATAGCGATAGAACTTTTTTCAATTC-TTTGAATTTTTTAAGATTCATCATACGTG
131 TAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTGAATTTTTTAAGATTCATCATACGTG
115316014 GCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTT
196 GCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTT
115316079 TCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATAT
261 TCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATAT
115316144 ATGGTAATAAAATTAA-TCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAAC
326 ATGGTAATAAAATTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAAC
115316208 CAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATACTATTTTGATAAA
391 CAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATACTATTTTGATAAA
115316273 AATTAGTTATAACTTTTAAAG
456 AATTA--T-TAACTTTTAAAG
115316294 ACATTTAAAAATATTAAATATTAAAATC-AACATTATTAATATAACAAAATAGTAATTTGAATAT
1 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
115316358 AATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
66 AATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
115316423 TAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTGAATTTTTTAAGATTCATCATACGTG
131 TAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTGAATTTTTTAAGATTCATCATACGTG
115316488 GCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTT
196 GCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTT
115316553 TCCAGCCTATATACTTTGAATCTTT-AAATATTTAAAATAAGG
261 TCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGG
115316595 TTGGAGAGAA
Statistics
Matches: 771, Mismatches: 0, Indels: 8
0.99 0.00 0.01
Matches are distributed among these distances:
471 118 0.15
472 175 0.23
473 319 0.41
474 159 0.21
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (473 bp):
ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
AATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
TAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTGAATTTTTTAAGATTCATCATACGTG
GCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTT
TCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATAT
ATGGTAATAAAATTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAAC
CAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATACTATTTTGATAAA
AATTATTAACTTTTAAAG
Found at i:115320746 original size:15 final size:15
Alignment explanation
Indices: 115320722--115320751 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
115320712 ATAATAATTC
*
115320722 ATATATATTTATCTT
1 ATATACATTTATCTT
115320737 ATATACATTTATCTT
1 ATATACATTTATCTT
115320752 CTTTATTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (15 bp):
ATATACATTTATCTT
Found at i:115321394 original size:25 final size:25
Alignment explanation
Indices: 115321366--115321419 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
115321356 AACAAATTAT
115321366 ACATAGTTCAACAAATGCTAATTCC
1 ACATAGTTCAACAAATGCTAATTCC
115321391 ACATAGTTCAACAAATGCTAATTCC
1 ACATAGTTCAACAAATGCTAATTCC
115321416 ACAT
1 ACAT
115321420 TCAAAATCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (25 bp):
ACATAGTTCAACAAATGCTAATTCC
Found at i:115321894 original size:41 final size:40
Alignment explanation
Indices: 115321837--115322055 Score: 269
Period size: 41 Copynumber: 5.4 Consensus size: 40
115321827 GTTATATGAC
115321837 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GT
115321878 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GT
* *
115321919 TTTTAGCGGCGTTTTACCAAAAACGCTGCTAATGCTCTTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC-TGT
* * * * *
115321960 TTTTAGCAGCATTTTACCGAAGGCGCCCCTAATGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* * **
115322000 TTTTAGCGGCATTTTTTACTAAAA-CGCCGCTGTTGCTCTGT
1 TTTTAGCGGC--GTTTTACCAAAAGCGCCGCTAATGCTCTGT
* *
115322041 TTTTAGTGGTGTTTT
1 TTTTAGCGGCGTTTT
115322056 TCTTAGAACG
Statistics
Matches: 155, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.03
40 12 0.08
41 130 0.84
42 9 0.06
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
Found at i:115322056 original size:41 final size:40
Alignment explanation
Indices: 115321992--115322086 Score: 111
Period size: 41 Copynumber: 2.3 Consensus size: 40
115321982 GCGCCCCTAA
*
115321992 TGCTCTGTTTTTAGCGGCATTTTT-TACTAAAACGCCGCTGT
1 TGCTCTGTTTTTAGCGGCATTTTTCT--TAAAACGCCACTGT
* ** *
115322033 TGCTCTGTTTTTAGTGGTGTTTTTCTTAGAACGCCACTGT
1 TGCTCTGTTTTTAGCGGCATTTTTCTTAAAACGCCACTGT
115322073 TGCTCTGTATTTTA
1 TGCTCTGT-TTTTA
115322087 AAATTTTTGC
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 20 0.43
41 26 0.55
42 1 0.02
ACGTcount: A:0.15, C:0.19, G:0.20, T:0.46
Consensus pattern (40 bp):
TGCTCTGTTTTTAGCGGCATTTTTCTTAAAACGCCACTGT
Found at i:115322067 original size:40 final size:40
Alignment explanation
Indices: 115321992--115322086 Score: 113
Period size: 40 Copynumber: 2.3 Consensus size: 40
115321982 GCGCCCCTAA
*
115321992 TGCTCTGTTTTTAGCGGCATTTTTTACTAAAACGCCGCTGT
1 TGCTCTGTTTTTAGCGG-ATTTTTTACTAAAACGCCACTGT
* *
115322033 TGCTCTGTTTTTAGTGG-TGTTTTT-CTTAGAACGCCACTGT
1 TGCTCTGTTTTTAGCGGAT-TTTTTAC-TAAAACGCCACTGT
115322073 TGCTCTGTATTTTA
1 TGCTCTGT-TTTTA
115322087 AAATTTTTGC
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
39 2 0.04
40 25 0.52
41 21 0.44
ACGTcount: A:0.15, C:0.19, G:0.20, T:0.46
Consensus pattern (40 bp):
TGCTCTGTTTTTAGCGGATTTTTTACTAAAACGCCACTGT
Found at i:115322495 original size:21 final size:21
Alignment explanation
Indices: 115322445--115322496 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
115322435 AAGCCTTAAA
**
115322445 AATTTTAAAAGAATATATCTT
1 AATTTTAATTGAATATATCTT
115322466 AATTTTAATTGAATATATCTT
1 AATTTTAATTGAATATATCTT
115322487 AATTTTAATT
1 AATTTTAATT
115322497 TTATAGCAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (21 bp):
AATTTTAATTGAATATATCTT
Found at i:115322908 original size:3 final size:3
Alignment explanation
Indices: 115322900--115322931 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
115322890 TACGAATTTT
115322900 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
115322932 TAGGAAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:115323012 original size:14 final size:14
Alignment explanation
Indices: 115322993--115323022 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
115322983 TTATATCGAG
115322993 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
115323007 ACCAATCCAATTCA
1 ACCAATCCAAATCA
115323021 AC
1 AC
115323023 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:115324022 original size:28 final size:28
Alignment explanation
Indices: 115323987--115324044 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
115323977 ATAAATTTTC
115323987 ATATAATGAACATTCAAATCATATTCAT
1 ATATAATGAACATTCAAATCATATTCAT
115324015 ATATAATGAACATTCAAATCATATTCAT
1 ATATAATGAACATTCAAATCATATTCAT
115324043 AT
1 AT
115324045 CAAAAACATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.47, C:0.14, G:0.03, T:0.36
Consensus pattern (28 bp):
ATATAATGAACATTCAAATCATATTCAT
Found at i:115330165 original size:3 final size:3
Alignment explanation
Indices: 115330157--115330182 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
115330147 GTTTACGAAT
115330157 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
115330183 TAGGAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:115338532 original size:11 final size:12
Alignment explanation
Indices: 115338502--115338529 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
115338492 GTTTTGTTTC
115338502 TTTTTATTTTAT
1 TTTTTATTTTAT
115338514 TTTTTATTTTAT
1 TTTTTATTTTAT
115338526 TTTT
1 TTTT
115338530 ATTAATCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTTATTTTAT
Found at i:115342923 original size:132 final size:132
Alignment explanation
Indices: 115342686--115342949 Score: 519
Period size: 132 Copynumber: 2.0 Consensus size: 132
115342676 ATGAGGTTGG
*
115342686 ATTAAATTATAAAGTTTTGAGTTAAAAGTCCATGAAGAACGTATAATTGAACCTAATATGGCAAA
1 ATTAAATTATAAAGTTTTGAGTAAAAAGTCCATGAAGAACGTATAATTGAACCTAATATGGCAAA
115342751 GACCCAAAACCCCTCATAATGTGTATAAGGGGCGTGTTGGAAAAAACCCGGTTTGAAAATATTTT
66 GACCCAAAACCCCTCATAATGTGTATAAGGGGCGTGTTGGAAAAAACCCGGTTTGAAAATATTTT
115342816 TT
131 TT
115342818 ATTAAATTATAAAGTTTTGAGTAAAAAGTCCATGAAGAACGTATAATTGAACCTAATATGGCAAA
1 ATTAAATTATAAAGTTTTGAGTAAAAAGTCCATGAAGAACGTATAATTGAACCTAATATGGCAAA
115342883 GACCCAAAACCCCTCATAATGTGTATAAGGGGCGTGTTGGAAAAAACCCGGTTTGAAAATATTTT
66 GACCCAAAACCCCTCATAATGTGTATAAGGGGCGTGTTGGAAAAAACCCGGTTTGAAAATATTTT
115342948 TT
131 TT
115342950 TACACAGTAG
Statistics
Matches: 131, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
132 131 1.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (132 bp):
ATTAAATTATAAAGTTTTGAGTAAAAAGTCCATGAAGAACGTATAATTGAACCTAATATGGCAAA
GACCCAAAACCCCTCATAATGTGTATAAGGGGCGTGTTGGAAAAAACCCGGTTTGAAAATATTTT
TT
Found at i:115348068 original size:17 final size:18
Alignment explanation
Indices: 115348046--115348091 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
115348036 ACTAGTTATA
*
115348046 GCCCGATAAATGAA-AGT
1 GCCCGATAAATGAATAAT
*
115348063 GCCCGATCAAT-AATAAT
1 GCCCGATAAATGAATAAT
115348080 GCCCGATAAATG
1 GCCCGATAAATG
115348092 GTAAATGATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 2 0.08
17 22 0.92
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.20
Consensus pattern (18 bp):
GCCCGATAAATGAATAAT
Found at i:115351057 original size:49 final size:48
Alignment explanation
Indices: 115350915--115351176 Score: 212
Period size: 49 Copynumber: 5.4 Consensus size: 48
115350905 CACCATGTTT
**
115350915 CAAACATGGTCTTACACTGGCTCTCAC-ATCTAAGTCGATGCCATGTCC
1 CAAACA-GGTCTTACACTGGCTCTCACTATCTGTGTCGATGCCATGTCC
* * * *
115350963 CAAACAAGTCTTACACTGACT-T-A-TATACATCGAGGCTGATGCCATGTCC
1 CAAACAGGTCTTACACTGGCTCTCACTAT-C-T-GTGTC-GATGCCATGTCC
* *
115351012 CAGACAGGTCTTACACTGGCTCTCACTTATCTGTGTCGATACCATGTCC
1 CAAACAGGTCTTACACTGGCTCTCAC-TATCTGTGTCGATGCCATGTCC
** * * * * *
115351061 CCGACAGGTCTTACACTAGCT-TGCA-TATCTAGAGGCCAATGCTATGTCC
1 CAAACAGGTCTTACACTGGCTCT-CACTATCT-G-TGTCGATGCCATGTCC
* *
115351110 CAAATAGGTCTTACACTAGCTCTCACTTATCTGTGTCGATGCCATGTCC
1 CAAACAGGTCTTACACTGGCTCTCAC-TATCTGTGTCGATGCCATGTCC
* * *
115351159 TAGACAAGTCTTACACTG
1 CAAACAGGTCTTACACTG
115351177 ACACACACAT
Statistics
Matches: 170, Mismatches: 29, Indels: 29
0.75 0.13 0.13
Matches are distributed among these distances:
45 3 0.02
46 2 0.01
47 19 0.11
48 11 0.06
49 118 0.69
50 6 0.04
51 7 0.04
52 1 0.01
53 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
CAAACAGGTCTTACACTGGCTCTCACTATCTGTGTCGATGCCATGTCC
Found at i:115351096 original size:98 final size:98
Alignment explanation
Indices: 115350915--115351178 Score: 331
Period size: 98 Copynumber: 2.7 Consensus size: 98
115350905 CACCATGTTT
** *
115350915 CAAACATGGTCTTACACTGGCTCTCAC--ATCTAAGTCGATGCCATGTCCCAAACAAGTCTTACA
1 CAAACA-GGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAAGTCTTACA
* **
115350978 CTGACTTATATACATCGAGGCTGATGCCATGTCC
65 CTGACTTATATACATAGAGGCCAATGCCATGTCC
* * * *
115351012 CAGACAGGTCTTACACTGGCTCTCACTTATCTGTGTCGATACCATGTCCCCGACAGGTCTTACAC
1 CAAACAGGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAAGTCTTACAC
*
115351077 T-AGCTTGCATAT-C-TAGAGGCCAATGCTATGTCC
66 TGA-CTT--ATATACATAGAGGCCAATGCCATGTCC
* * *
115351110 CAAATAGGTCTTACACTAGCTCTCACTTATCTGTGTCGATGCCATGTCCTAGACAAGTCTTACAC
1 CAAACAGGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAAGTCTTACAC
115351175 TGAC
66 TGAC
115351179 ACACACATCA
Statistics
Matches: 143, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
96 20 0.14
97 6 0.04
98 111 0.78
99 2 0.01
100 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (98 bp):
CAAACAGGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAAGTCTTACAC
TGACTTATATACATAGAGGCCAATGCCATGTCC
Found at i:115360445 original size:20 final size:22
Alignment explanation
Indices: 115360405--115360447 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
115360395 TTGTAATTAA
115360405 ATTATTTTTATAATTACTTTTG
1 ATTATTTTTATAATTACTTTTG
*
115360427 ATTATTTTT-T-ATTATTTTTG
1 ATTATTTTTATAATTACTTTTG
115360447 A
1 A
115360448 CAGATTTGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 1 0.05
22 9 0.45
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.67
Consensus pattern (22 bp):
ATTATTTTTATAATTACTTTTG
Found at i:115362031 original size:59 final size:58
Alignment explanation
Indices: 115361966--115362085 Score: 213
Period size: 59 Copynumber: 2.1 Consensus size: 58
115361956 AACTTTATTT
*
115361966 TATTTTATTTGCTTTACTTTGTTAAAATTCTAGTTTTTAATCACCTCTTCAACTCAAAA
1 TATTTTATTTGCTTTACTTTGTTAAAATTCTAGTTTTTAATCACCTCTTCAAAT-AAAA
*
115362025 TATTTTATTTGTTTTACTTTGTTAAAATTCTAGTTTTTAATCACCTCTTCAAATAAAA
1 TATTTTATTTGCTTTACTTTGTTAAAATTCTAGTTTTTAATCACCTCTTCAAATAAAA
115362083 TAT
1 TAT
115362086 ATTTTCTTCA
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
58 7 0.12
59 52 0.88
ACGTcount: A:0.30, C:0.14, G:0.05, T:0.51
Consensus pattern (58 bp):
TATTTTATTTGCTTTACTTTGTTAAAATTCTAGTTTTTAATCACCTCTTCAAATAAAA
Found at i:115377869 original size:22 final size:19
Alignment explanation
Indices: 115377841--115377882 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
115377831 TGATAATCAT
115377841 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
115377863 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
115377882 T
1 T
115377883 CAACTTTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:115378571 original size:17 final size:18
Alignment explanation
Indices: 115378538--115378573 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
115378528 TTCTCCTAAA
*
115378538 TTTTAATTTTATTTAATT
1 TTTTAATTTTATATAATT
115378556 TTTTAATTTT-TATAATT
1 TTTTAATTTTATATAATT
115378573 T
1 T
115378574 ATTGAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTAATTTTATATAATT
Found at i:115381432 original size:27 final size:27
Alignment explanation
Indices: 115381382--115381435 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
115381372 ATATATAATT
115381382 ATTATAAAATAATCATTTTGTAATTAA
1 ATTATAAAATAATCATTTTGTAATTAA
* *
115381409 ATTATTAACATAATGATTTT-TAATTAA
1 ATTA-TAAAATAATCATTTTGTAATTAA
115381436 TTTTATAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 11 0.46
28 13 0.54
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (27 bp):
ATTATAAAATAATCATTTTGTAATTAA
Found at i:115381441 original size:28 final size:29
Alignment explanation
Indices: 115381377--115381441 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 29
115381367 AAAAAATATA
115381377 TAATTATTA-TAAAATAATCATTTTGTAAT
1 TAATT-TTATTAAAATAATCATTTTGTAAT
* * *
115381406 TAA-ATTATTAACATAATGATTTT-TAAT
1 TAATTTTATTAAAATAATCATTTTGTAAT
115381433 TAATTTTAT
1 TAATTTTAT
115381442 AATTACTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
27 10 0.33
28 17 0.57
29 3 0.10
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (29 bp):
TAATTTTATTAAAATAATCATTTTGTAAT
Found at i:115387317 original size:18 final size:18
Alignment explanation
Indices: 115387291--115387325 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
115387281 ATACATGTTA
*
115387291 TTTTGTTTGAATTGAATG
1 TTTTATTTGAATTGAATG
115387309 TTTTATTTGAATTGAAT
1 TTTTATTTGAATTGAAT
115387326 ATGATATGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.17, T:0.57
Consensus pattern (18 bp):
TTTTATTTGAATTGAATG
Found at i:115388207 original size:31 final size:31
Alignment explanation
Indices: 115388169--115388239 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
115388159 TTAGGCAGAT
*
115388169 TGCTAATTTG-TTTGGAAGTATGATATTATTA
1 TGCTAATTTGCTTT-GAAGCATGATATTATTA
115388200 TGCTAATTTGCTTTGAAGCATGATATTATTA
1 TGCTAATTTGCTTTGAAGCATGATATTATTA
*
115388231 TGCTTATTT
1 TGCTAATTT
115388240 AGATCAGTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
31 34 0.92
32 3 0.08
ACGTcount: A:0.27, C:0.07, G:0.17, T:0.49
Consensus pattern (31 bp):
TGCTAATTTGCTTTGAAGCATGATATTATTA
Found at i:115390461 original size:2 final size:2
Alignment explanation
Indices: 115390454--115390489 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
115390444 GCCTCGCCAC
115390454 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
115390490 TGACTTCGTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:115390565 original size:2 final size:2
Alignment explanation
Indices: 115390560--115390593 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
115390550 ACACACACAC
115390560 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
115390594 TCTGGTGGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:115390624 original size:27 final size:27
Alignment explanation
Indices: 115390594--115390645 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
115390584 ATATATATAT
*
115390594 TCTGGTGGCCTAGCCACAATATCTGTA
1 TCTGGTGACCTAGCCACAATATCTGTA
* * *
115390621 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTAGCCACAATATCTG
115390646 GCAGCCTCGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (27 bp):
TCTGGTGACCTAGCCACAATATCTGTA
Found at i:115393222 original size:16 final size:17
Alignment explanation
Indices: 115393201--115393241 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 17
115393191 AAGTGGCCTT
115393201 CTATTTG-TTAAAGTGC
1 CTATTTGTTTAAAGTGC
115393217 CTATTTGTTATTAAAGTGC
1 CTATTTG-T-TTAAAGTGC
115393236 CTATTT
1 CTATTT
115393242 ATTATGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.32
19 15 0.68
ACGTcount: A:0.24, C:0.12, G:0.15, T:0.49
Consensus pattern (17 bp):
CTATTTGTTTAAAGTGC
Found at i:115393230 original size:19 final size:19
Alignment explanation
Indices: 115393208--115393246 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
115393198 CTTCTATTTG
*
115393208 TTAAAGTGCCTATTTGTTA
1 TTAAAGTGCCTATTTATTA
115393227 TTAAAGTGCCTATTTATTA
1 TTAAAGTGCCTATTTATTA
115393246 T
1 T
115393247 GTTTTTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.49
Consensus pattern (19 bp):
TTAAAGTGCCTATTTATTA
Found at i:115394229 original size:40 final size:40
Alignment explanation
Indices: 115394167--115394275 Score: 116
Period size: 40 Copynumber: 2.7 Consensus size: 40
115394157 TATGTTCGGA
* *
115394167 ACTAAGTGTGC-AATTTGAAATAGCTTCGGATATAAAT-A-GC
1 ACTAAGTGTGCGAA-ATGGAATAGCTTCGGATAT--ATGAGGC
*
115394207 ACTAAGTGTGCGAAATGGAATAGCTTCGGCTATATGAGGC
1 ACTAAGTGTGCGAAATGGAATAGCTTCGGATATATGAGGC
* *
115394247 ACTAAGTGTGCGATATCGAGATAGCTTCG
1 ACTAAGTGTGCGAAATGGA-ATAGCTTCG
115394276 ATTTATTGGA
Statistics
Matches: 60, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
38 2 0.03
39 1 0.02
40 46 0.77
41 11 0.18
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.28
Consensus pattern (40 bp):
ACTAAGTGTGCGAAATGGAATAGCTTCGGATATATGAGGC
Found at i:115406297 original size:17 final size:17
Alignment explanation
Indices: 115406272--115406308 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
115406262 GATAAGTATA
*
115406272 CATTATCATTGCATTTT
1 CATTATCATTACATTTT
*
115406289 CATTGTCATTACATTTT
1 CATTATCATTACATTTT
115406306 CAT
1 CAT
115406309 GTTAGTACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.24, C:0.19, G:0.05, T:0.51
Consensus pattern (17 bp):
CATTATCATTACATTTT
Found at i:115412241 original size:10 final size:10
Alignment explanation
Indices: 115412220--115412305 Score: 56
Period size: 10 Copynumber: 8.4 Consensus size: 10
115412210 CAACCCAATC
115412220 TTTATTTTTA
1 TTTATTTTTA
115412230 TTT-TTATTTA
1 TTTATT-TTTA
**
115412240 -TTATTTTCC
1 TTTATTTTTA
115412249 TTTATTTTCT-
1 TTTATTTT-TA
115412259 TTTATTATTTA
1 TTTATT-TTTA
115412270 -TTATTTATTA
1 TTTATTT-TTA
115412280 TTTATTATTTTA
1 TTTA-T-TTTTA
115412292 TTT-TATTTTA
1 TTTAT-TTTTA
115412302 TTTA
1 TTTA
115412306 AATATTAATA
Statistics
Matches: 62, Mismatches: 3, Indels: 21
0.72 0.03 0.24
Matches are distributed among these distances:
9 7 0.11
10 41 0.66
11 5 0.08
12 7 0.11
13 2 0.03
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:115412243 original size:7 final size:7
Alignment explanation
Indices: 115412221--115412289 Score: 65
Period size: 7 Copynumber: 9.9 Consensus size: 7
115412211 AACCCAATCT
115412221 TTATTT-
1 TTATTTA
115412227 TTATTT-
1 TTATTTA
115412233 TTATTTA
1 TTATTTA
*
115412240 TTATTTTCCT
1 TTA-TTT--A
115412250 TTATTT-
1 TTATTTA
115412256 TCT-TTTA
1 T-TATTTA
115412263 TTATTTA
1 TTATTTA
115412270 TTATTTA
1 TTATTTA
115412277 TTATTTA
1 TTATTTA
115412284 TTATTT
1 TTATTT
115412290 TATTTTATTT
Statistics
Matches: 55, Mismatches: 1, Indels: 13
0.80 0.01 0.19
Matches are distributed among these distances:
6 17 0.31
7 29 0.53
8 3 0.05
9 3 0.05
10 3 0.05
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.75
Consensus pattern (7 bp):
TTATTTA
Found at i:115412269 original size:30 final size:29
Alignment explanation
Indices: 115412219--115412275 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 29
115412209 GCAACCCAAT
115412219 CTTTATTTTTATTTTTATTTATTATTTTC
1 CTTTATTTTTATTTTTATTTATTATTTTC
115412248 CTTTATTTTCT-TTTATTATTTATTATTT
1 CTTTATTTT-TATTT-TTATTTATTATTT
115412276 ATTATTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.75
Consensus pattern (29 bp):
CTTTATTTTTATTTTTATTTATTATTTTC
Found at i:115412491 original size:41 final size:42
Alignment explanation
Indices: 115412372--115412484 Score: 126
Period size: 41 Copynumber: 2.8 Consensus size: 42
115412362 AAAACAACCC
* * * * *
115412372 TATCCATGGTACCAAACAGTTCTATTCCA-ACCAAAATGCCA
1 TATCCCTGCTACCAAACAGTTCTATTCTAGCCCAGAATGCCA
*
115412413 TATCCCTGCTACCAAACAGTTCTATTCTAGCCCAGAATGCTA
1 TATCCCTGCTACCAAACAGTTCTATTCTAGCCCAGAATGCCA
*
115412455 TATCTCTGC-AGCCAAACAG-TCTATT-TAGCC
1 TATCCCTGCTA-CCAAACAGTTCTATTCTAGCC
115412485 TTAGAATCCC
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
40 5 0.08
41 33 0.52
42 25 0.40
ACGTcount: A:0.31, C:0.30, G:0.12, T:0.27
Consensus pattern (42 bp):
TATCCCTGCTACCAAACAGTTCTATTCTAGCCCAGAATGCCA
Found at i:115413387 original size:118 final size:118
Alignment explanation
Indices: 115413179--115413409 Score: 390
Period size: 118 Copynumber: 2.0 Consensus size: 118
115413169 TGTTTTCCAT
* *
115413179 GGTTATGAGTACAGCTTAGATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
115413244 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
**
115413297 GGTTATGAGTATGGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
****
115413362 CTACTTCGCGTCAAAAGGTTGTGTGACGTGTTGGGTAAAACTCCGCTA
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTA
115413410 ACCGGAAATA
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
118 105 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.29
Consensus pattern (118 bp):
GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
Found at i:115413541 original size:1 final size:1
Alignment explanation
Indices: 115413535--115413567 Score: 57
Period size: 1 Copynumber: 33.0 Consensus size: 1
115413525 AATAAAATTT
*
115413535 AAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
115413568 TAAGTACTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:115417465 original size:94 final size:94
Alignment explanation
Indices: 115417305--115417475 Score: 227
Period size: 94 Copynumber: 1.8 Consensus size: 94
115417295 GGGTTACAAT
* * * *
115417305 AACCTAAGTTTATTGATTTATGATCATGAACAATCTTCTTTGAGTTAGCTAATTTACAATCACAA
1 AACCTAAGTTCATTGATTTACGATCATGAACAATCTTCTCTAAGTTAGCTAATTTACAATCACAA
*
115417370 CTCCAAATAGCTTGCTGATTTACAATCAC
66 CTCCAAACAGCTTGCTGATTTACAATCAC
* ** ** *
115417399 AACCTAAGTTCATTGATTTACGATCATGAACAATCTT-TCCTAAGTTAGTTGGTTTATGATCGCA
1 AACCTAAGTTCATTGATTTACGATCATGAACAATCTTCT-CTAAGTTAGCTAATTTACAATCACA
115417463 ACTCCAAACAGCT
65 ACTCCAAACAGCT
115417476 CGTTGACTTA
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
93 1 0.02
94 64 0.98
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (94 bp):
AACCTAAGTTCATTGATTTACGATCATGAACAATCTTCTCTAAGTTAGCTAATTTACAATCACAA
CTCCAAACAGCTTGCTGATTTACAATCAC
Found at i:115417492 original size:94 final size:94
Alignment explanation
Indices: 115417305--115417495 Score: 222
Period size: 94 Copynumber: 2.0 Consensus size: 94
115417295 GGGTTACAAT
* * * *
115417305 AACCTAAGTTTATTGATTTATGATCATGAACAATCTTCTTTGAGTTAGCTAATTTACAATCACAA
1 AACCTAAGTTCATTGATTTACGATCATGAACAATCTTCTCTAAGTTAGCTAATTTACAATCACAA
* * *
115417370 CTCCAAATAGCTTGCTGATTTACAATCAC
66 CTCCAAACAGCTCGCTGACTTACAATCAC
* ** ** *
115417399 AACCTAAGTTCATTGATTTACGATCATGAACAATCTT-TCCTAAGTTAGTTGGTTTATGATCGCA
1 AACCTAAGTTCATTGATTTACGATCATGAACAATCTTCT-CTAAGTTAGCTAATTTACAATCACA
* **
115417463 ACTCCAAACAGCTCGTTGACTTATGATCAC
65 ACTCCAAACAGCTCGCTGACTTACAATCAC
115417493 AAC
1 AAC
115417496 TGATATTATT
Statistics
Matches: 80, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
93 1 0.01
94 79 0.99
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (94 bp):
AACCTAAGTTCATTGATTTACGATCATGAACAATCTTCTCTAAGTTAGCTAATTTACAATCACAA
CTCCAAACAGCTCGCTGACTTACAATCAC
Found at i:115417540 original size:130 final size:130
Alignment explanation
Indices: 115417378--115417657 Score: 352
Period size: 130 Copynumber: 2.2 Consensus size: 130
115417368 AACTCCAAAT
*
115417378 AGCTTGCTGATTTACAATCACAACCTAAGTTCATTGATTTACGATCATGAACAATCTT-TCCTAA
1 AGCTTGTTGATTTACAATCACAACCTAAGTTCATTGATTTACGATCATGAACAATCTTCT-CTAA
* * * * * *
115417442 GTTAGTTGGTTTA-TGATCGCAACTCCAAACAGCTCGTTGACTTATGATCACAACTGATATTATT
65 GTTAGCTGATTTACT-ATCGCAACTCCAAACAACTCGCTAACTTATGATCACAACCGATATTATT
115417506 -A
129 AA
* * * *
115417507 AGACTTGTTGATTTA-AGATCACAGCCTAAGTTCATTGATTTACGATCATGAATAGTCTTCTCTG
1 AG-CTTGTTGATTTACA-ATCACAACCTAAGTTCATTGATTTACGATCATGAACAATCTTCTCTA
* * *
115417571 AGTTAGCTGATTTACTATTGCAACTCCAAACAACTTGCTAATTTATGATCACAACCGATATTATT
64 AGTTAGCTGATTTACTATCGCAACTCCAAACAACTCGCTAACTTATGATCACAACCGATATTATT
115417636 AA
129 AA
* *
115417638 AGCTCGTTGATTTACTATCA
1 AGCTTGTTGATTTACAATCA
115417658 TGAATAATCT
Statistics
Matches: 129, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
129 3 0.02
130 121 0.94
131 5 0.04
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (130 bp):
AGCTTGTTGATTTACAATCACAACCTAAGTTCATTGATTTACGATCATGAACAATCTTCTCTAAG
TTAGCTGATTTACTATCGCAACTCCAAACAACTCGCTAACTTATGATCACAACCGATATTATTAA
Found at i:115417725 original size:103 final size:103
Alignment explanation
Indices: 115417541--115417760 Score: 280
Period size: 103 Copynumber: 2.1 Consensus size: 103
115417531 CCTAAGTTCA
* * *
115417541 TTGATTTACGATCATGAATAGTCTTCTCTGAGTTAGCTGATTTACTATTGCAACTCCAAACAACT
1 TTGATTTACGATCATGAATAATCTTCTCTGAGTTAGCTGATTTACTATCGCAACCCCAAACAACT
*
115417606 TGCTAATTTATGATCACAACCGATATTATTAAAGCTCG
66 TGCTAATTTATAATCACAACCGATATTATTAAAGCTCG
* * * * * *
115417644 TTGATTTACTATCATGAATAATCTTTTTTTAGTTAGTTGATTTA-TGATCGCAACCCCAAACAAT
1 TTGATTTACGATCATGAATAATCTTCTCTGAGTTAGCTGATTTACT-ATCGCAACCCCAAACAAC
* * * *
115417708 TTGCTGATTTATAATCACAACTGATATTATTAATGCTCA
65 TTGCTAATTTATAATCACAACCGATATTATTAAAGCTCG
**
115417747 CAGATTTACGATCA
1 TTGATTTACGATCA
115417761 CAACCTAAGT
Statistics
Matches: 99, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
102 1 0.01
103 98 0.99
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (103 bp):
TTGATTTACGATCATGAATAATCTTCTCTGAGTTAGCTGATTTACTATCGCAACCCCAAACAACT
TGCTAATTTATAATCACAACCGATATTATTAAAGCTCG
Found at i:115417727 original size:233 final size:224
Alignment explanation
Indices: 115417305--115417827 Score: 557
Period size: 233 Copynumber: 2.3 Consensus size: 224
115417295 GGGTTACAAT
* *
115417305 AACCTAAGTTTATTGATTTATGATCATGAACAATCTTCTTTGAGTTAGCTAATTTACAATCACAA
1 AACCTAAGTTTATTGATTTACGATCATGAACAATCTTCTCTGAGTTAGCTAATTTACAATCACAA
* * * *
115417370 CTCCAAATAGCTTGCTGATTTACAATCACAACCTAAGTTCATTGATTTACGATCATGAACAATCT
66 CTCCAAACAACTTGCTAATTTACAATCACAACCTAAGCTCATTGATTTACGATCATGAACAATCT
* * * * *
115417435 TTCCTAAGTTAGTTGGTTTATGATCGCAACTCCAAACAGCTCGTTGACTTATGATCACAACTGAT
131 TTCCTAAGTTAGTTGATTTATGATCGCAACCCCAAACAACTCGCTGACTTATAATCACAACTGAT
****
115417500 ATTATTAA-GACTTGTTGATTTAAGATCAC
196 ATTATTAATG-CTCACAGATTTAAGATCAC
* * * * * * **
115417529 AGCCTAAGTTCATTGATTTACGATCATGAATAGTCTTCTCTGAGTTAGCTGATTTACTATTGCAA
1 AACCTAAGTTTATTGATTTACGATCATGAACAATCTTCTCTGAGTTAGCTAATTTACAATCACAA
** * *
115417594 CTCCAAACAACTTGCTAATTTATGATCACAACCGATATTATTAAAGCTCGTTGATTTACTATCAT
66 CTCCAAACAACTTGCTAATTTACAATCACAACC--------T-AAGCTCATTGATTTACGATCAT
* ** * * * *
115417659 GAATAATCTTTTTTTAGTTAGTTGATTTATGATCGCAACCCCAAACAATTTGCTGATTTATAATC
122 GAACAATCTTTCCTAAGTTAGTTGATTTATGATCGCAACCCCAAACAACTCGCTGACTTATAATC
*
115417724 ACAACTGATATTATTAATGCTCACAGATTTACGATCAC
187 ACAACTGATATTATTAATGCTCACAGATTTAAGATCAC
* * * * * *
115417762 AACCTAAGTTTACTAATTTACGATCATGAAAAATTTTGTC-GAGTTAGC-ATATTTACGATCACA
1 AACCTAAGTTTATTGATTTACGATCATGAACAATCTTCTCTGAGTTAGCTA-ATTTACAATCACA
115417825 ACT
65 ACT
115417828 TAGGTACGTT
Statistics
Matches: 241, Mismatches: 47, Indels: 14
0.80 0.16 0.05
Matches are distributed among these distances:
224 83 0.34
232 22 0.09
233 135 0.56
234 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (224 bp):
AACCTAAGTTTATTGATTTACGATCATGAACAATCTTCTCTGAGTTAGCTAATTTACAATCACAA
CTCCAAACAACTTGCTAATTTACAATCACAACCTAAGCTCATTGATTTACGATCATGAACAATCT
TTCCTAAGTTAGTTGATTTATGATCGCAACCCCAAACAACTCGCTGACTTATAATCACAACTGAT
ATTATTAATGCTCACAGATTTAAGATCAC
Found at i:115424315 original size:85 final size:85
Alignment explanation
Indices: 115424172--115424344 Score: 328
Period size: 85 Copynumber: 2.0 Consensus size: 85
115424162 CCTGCATCAG
*
115424172 TTAGCATTCATATTCCAATTTGCTTTTTTCTTTCTTGCTTTCTTTCTTAATTTCATTGTTTTATT
1 TTAGCATTCATATTCCAATTTGCTTTTTTCTTTCTTGCTTTATTTCTTAATTTCATTGTTTTATT
115424237 TTCTTAGGTCAAAGCAGATT
66 TTCTTAGGTCAAAGCAGATT
*
115424257 TTAGCATTCATATTCCAATTTGCTTTTTTCTTTCTTGCTTTATTTCTTAATTTTATTGTTTTATT
1 TTAGCATTCATATTCCAATTTGCTTTTTTCTTTCTTGCTTTATTTCTTAATTTCATTGTTTTATT
115424322 TTCTTAGGTCAAAGCAGATT
66 TTCTTAGGTCAAAGCAGATT
115424342 TTA
1 TTA
115424345 TAGATGCCTT
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.20, C:0.15, G:0.09, T:0.56
Consensus pattern (85 bp):
TTAGCATTCATATTCCAATTTGCTTTTTTCTTTCTTGCTTTATTTCTTAATTTCATTGTTTTATT
TTCTTAGGTCAAAGCAGATT
Found at i:115457569 original size:25 final size:25
Alignment explanation
Indices: 115457541--115457595 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
115457531 TCGCATGAGC
*
115457541 TTACCATTATTCAGCTTAGAGGAGT
1 TTACCATTATTCAGCTCAGAGGAGT
**
115457566 TTACTGTTATTCAGCTCAGAGGAGT
1 TTACCATTATTCAGCTCAGAGGAGT
115457591 TTACC
1 TTACC
115457596 GTTTATAGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.36
Consensus pattern (25 bp):
TTACCATTATTCAGCTCAGAGGAGT
Found at i:115459953 original size:8 final size:8
Alignment explanation
Indices: 115459935--115459965 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
115459925 AAAAACAACA
115459935 ATTACAATT
1 ATTA-AATT
115459944 ATTAAATT
1 ATTAAATT
115459952 ATTAAATT
1 ATTAAATT
115459960 ATTAAA
1 ATTAAA
115459966 CATAGTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.82
9 4 0.18
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (8 bp):
ATTAAATT
Found at i:115460541 original size:16 final size:15
Alignment explanation
Indices: 115460515--115460544 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
115460505 TTAATTTTTT
115460515 CTTTTTTTTCTTTCC
1 CTTTTTTTTCTTTCC
115460530 CTTTTTTCTTCTTTC
1 CTTTTTT-TTCTTTC
115460545 TTTCCTTGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (15 bp):
CTTTTTTTTCTTTCC
Found at i:115460656 original size:18 final size:20
Alignment explanation
Indices: 115460626--115460667 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
115460616 ATATTATATC
* *
115460626 ATTATTATTATTATATTTTTA
1 ATTATAATTATTAT-TTCTTA
115460647 ATTATAATTATTATTTCTTA
1 ATTATAATTATTATTTCTTA
115460667 A
1 A
115460668 ATATTAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTATAATTATTATTTCTTA
Found at i:115468623 original size:45 final size:45
Alignment explanation
Indices: 115468540--115468636 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 45
115468530 TTCGAGCTCG
* * *
115468540 TTGAGTTAGTCCGAGTTCGTGATATATGTGAGAAATCTGAACTTA
1 TTGAGTTAGTCCAAGTTCATGATATATGTGAGAAATCTGAACTCA
* * *
115468585 TTGAGTTTGTCCAAGTTCATGATATATGTGA-AGCATCTGAGCTCA
1 TTGAGTTAGTCCAAGTTCATGATATATGTGAGA-AATCTGAACTCA
115468630 TTGAGTT
1 TTGAGTT
115468637 GGTTCAAGCT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 1 0.02
45 44 0.98
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (45 bp):
TTGAGTTAGTCCAAGTTCATGATATATGTGAGAAATCTGAACTCA
Found at i:115468671 original size:44 final size:44
Alignment explanation
Indices: 115468584--115468720 Score: 157
Period size: 44 Copynumber: 3.1 Consensus size: 44
115468574 ATCTGAACTT
* * * * *
115468584 ATTGAGTTTGTCCAAGTTCATGATATATGTGAAGCATCTGAGCTC
1 ATTGAGTTGGTCCAAGTTCATTATAGATGCG-AGCATCCGAGCTC
* *
115468629 ATTGAGTTGGTTCAAGCTCATTATAGATGCGAGCATCCGAGCTC
1 ATTGAGTTGGTCCAAGTTCATTATAGATGCGAGCATCCGAGCTC
* * * *
115468673 GTTGAGTTGGTCCGAGTTCATTATGGATGCGATGCATCCGAGTTC
1 ATTGAGTTGGTCCAAGTTCATTATAGATGCGA-GCATCCGAGCTC
115468718 ATT
1 ATT
115468721 ATGGATGTGT
Statistics
Matches: 77, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
44 39 0.51
45 38 0.49
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (44 bp):
ATTGAGTTGGTCCAAGTTCATTATAGATGCGAGCATCCGAGCTC
Found at i:115475767 original size:79 final size:77
Alignment explanation
Indices: 115475609--115475831 Score: 243
Period size: 79 Copynumber: 2.8 Consensus size: 77
115475599 TCGAATGATG
* * * *
115475609 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTA-ATCCGGGCTAAGACCCGAAGGCAT-
115475673 TGTGCGACATACTAAA
62 TGTGCGACATACTAAA
*
115475689 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATCCCGGGCTAAG-CCCGAAGGCATTG
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAT-CCGGGCTAAGACCCGAAGGCATT-
**
115475753 GTGCGAGTTACTAAA
63 GTGCGACATACTAAA
* * * * *
115475768 TTCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTA-ATCCGGGCTAAGACCCGAAGGCATT
115475832 TGAACGAGTA
Statistics
Matches: 124, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
78 4 0.03
79 65 0.52
80 47 0.38
81 8 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (77 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAATCCGGGCTAAGACCCGAAGGCATTGTG
CGACATACTAAA
Found at i:115475832 original size:119 final size:120
Alignment explanation
Indices: 115475610--115475833 Score: 269
Period size: 119 Copynumber: 1.9 Consensus size: 120
115475600 CGAATGATGT
* *
115475610 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATATG
1 CCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATATG
115475675 TGCGACATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATC
66 TGCGACATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATC
* * * ** *
115475730 CCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATTCGGGTTAAG-TCCTGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGATCC-GAAGGCATA
** * *
115475792 TGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TGTGCGACATACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
115475834 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
118 4 0.05
119 66 0.75
120 18 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATATG
TGCGACATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATC
Found at i:115475840 original size:40 final size:39
Alignment explanation
Indices: 115475610--115475833 Score: 222
Period size: 40 Copynumber: 5.6 Consensus size: 39
115475600 CGAATGATGT
* * *
115475610 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * **
115475650 CCGGACTAAGAT-CCGAAGGCATATGTGCGACATACTAAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
115475689 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATC
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
115475730 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
115475768 TTCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
115475809 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
115475834 AACGAGTAGC
Statistics
Matches: 154, Mismatches: 22, Indels: 16
0.80 0.11 0.08
Matches are distributed among these distances:
39 34 0.22
40 111 0.72
41 9 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:115475855 original size:79 final size:79
Alignment explanation
Indices: 115475682--115475856 Score: 198
Period size: 79 Copynumber: 2.2 Consensus size: 79
115475672 ATGTGCGACA
* *
115475682 TACTAAA-TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATCCCGGGCTAAGCCCGAA
1 TACTAAATTCCGG-TTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAA
**
115475746 GGCATTGGTGCGAGT
65 GGCATTGGAACGAGT
* *
115475761 TACTAAATTCGGGTTAAG-TCCTGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCG
1 TACTAAATTCCGGTTAAGATCC-GAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCG
*
115475824 AAGGCATTTGAACGAG-
63 AAGGCATTGGAACGAGT
*
115475840 TAGCTATA-TCCGGTTAA
1 TA-CTAAATTCCGGTTAA
115475857 ATTTCGAAGG
Statistics
Matches: 82, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
78 5 0.06
79 52 0.63
80 25 0.30
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
TACTAAATTCCGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAG
GCATTGGAACGAGT
Found at i:115482840 original size:79 final size:80
Alignment explanation
Indices: 115482684--115482906 Score: 249
Period size: 79 Copynumber: 2.8 Consensus size: 80
115482674 TCGAATGATG
* * * * * *
115482684 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-TCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
115482747 TTGTGCGAGTTACTAAA
64 TGGTGCGAGTTACTAAA
*
115482764 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATCCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAGTCCCGAAGGCAT
115482826 TGGTGCGAGTTACTAAA
64 TGGTGCGAGTTACTAAA
* ** * * *
115482843 TTCGGGTTAAGTCCCGATGGCATTTGTGCGAGTTACTATAACTGGGCTATGTCCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATT
115482907 TGAACGAGTA
Statistics
Matches: 122, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 66 0.54
80 47 0.39
81 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTG
GTGCGAGTTACTAAA
Found at i:115482915 original size:40 final size:39
Alignment explanation
Indices: 115482685--115482908 Score: 231
Period size: 40 Copynumber: 5.6 Consensus size: 39
115482675 CGAATGATGT
* * *
115482685 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
115482725 CCGGACTAAGAT-TCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
115482764 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATC
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
115482805 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
115482843 TTCGGGTTAAGTCCCGATGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
115482884 CTGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
115482909 AACGAGTAGC
Statistics
Matches: 157, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
39 34 0.22
40 113 0.72
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:115482930 original size:79 final size:78
Alignment explanation
Indices: 115482738--115482941 Score: 227
Period size: 79 Copynumber: 2.6 Consensus size: 78
115482728 GACTAAGATT
*
115482738 CGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
*
115482803 TCCCGGGCTAAGCC
65 TACCGGGCTAAGCC
* * *
115482817 CGAAGGCATTGGTGCGAGTTACTAAATTCGGGTTAAG-TCCCGATGGCATTTGTGCGAGTTACT-
1 CGAAGGCATTTGTGCGAGTTACTAAA-TCCGGTTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
* *
115482880 ATAACTGGGCTATGTCC
64 AT-ACCGGGCTAAG-CC
** *
115482897 CGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAA-ATTCCGAAGG
1 CGAAGGCATTTGTGCGAGTTA-CTAAATCCGGTTAAGA-TCCGAAGG
115482942 TACGTGATTC
Statistics
Matches: 105, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
78 3 0.03
79 76 0.72
80 26 0.25
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (78 bp):
CGAAGGCATTTGTGCGAGTTACTAAATCCGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
ACCGGGCTAAGCC
Found at i:115485281 original size:5 final size:5
Alignment explanation
Indices: 115485266--115485321 Score: 60
Period size: 5 Copynumber: 10.6 Consensus size: 5
115485256 AGAGGTAGGA
*
115485266 AAAAGG AAAAG AAAAG -AAAG AAAAG AAAAG AAAAG AATAACA AAAAG
1 AAAA-G AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AA-AA-G AAAAG
115485313 AAAAAG AAA
1 -AAAAG AAA
115485322 GATGTATGAA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 13 0.30
7 2 0.05
ACGTcount: A:0.79, C:0.02, G:0.18, T:0.02
Consensus pattern (5 bp):
AAAAG
Found at i:115485290 original size:14 final size:14
Alignment explanation
Indices: 115485271--115485298 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
115485261 TAGGAAAAAG
115485271 GAAAAGAAAAGAAA
1 GAAAAGAAAAGAAA
115485285 GAAAAGAAAAGAAA
1 GAAAAGAAAAGAAA
115485299 AGAATAACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (14 bp):
GAAAAGAAAAGAAA
Found at i:115485295 original size:19 final size:19
Alignment explanation
Indices: 115485266--115485323 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
115485256 AGAGGTAGGA
115485266 AAAAGGAAAAGAAAAGAAAG
1 AAAA-GAAAAGAAAAGAAAG
*
115485286 AAAAGAAAAGAAAAG-AAT
1 AAAAGAAAAGAAAAGAAAG
*
115485304 AACA-AAAAGAAAAAGAAAG
1 AAAAGAAAAG-AAAAGAAAG
115485323 A
1 A
115485324 TGTATGAACA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
17 5 0.15
18 10 0.30
19 14 0.42
20 4 0.12
ACGTcount: A:0.78, C:0.02, G:0.19, T:0.02
Consensus pattern (19 bp):
AAAAGAAAAGAAAAGAAAG
Found at i:115490032 original size:40 final size:41
Alignment explanation
Indices: 115489988--115490081 Score: 122
Period size: 40 Copynumber: 2.3 Consensus size: 41
115489978 CGATTATGCT
*
115489988 TGGCACTAAGTGTGCG-GTTTAATATAGCTTCGACTACA-AA
1 TGGCACTAAGTGTGCGAGTTTAA-ATAGCTTCAACTACATAA
* * *
115490028 TGGCACTAAGTGTCCGAGTTTGAATAGCTTCAACTATATAA
1 TGGCACTAAGTGTGCGAGTTTAAATAGCTTCAACTACATAA
115490069 -GGCACTAAGTGTG
1 TGGCACTAAGTGTG
115490082 TGATACCGAC
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 40 0.85
41 7 0.15
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGAGTTTAAATAGCTTCAACTACATAA
Found at i:115498611 original size:13 final size:13
Alignment explanation
Indices: 115498595--115498627 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
115498585 TTTAATTAAA
*
115498595 TTAGTTAATTAGT
1 TTAGATAATTAGT
115498608 TTAGATAATTAGT
1 TTAGATAATTAGT
115498621 TTA-ATAA
1 TTAGATAA
115498628 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:115507193 original size:42 final size:42
Alignment explanation
Indices: 115507074--115507195 Score: 172
Period size: 43 Copynumber: 2.9 Consensus size: 42
115507064 TACCATACCA
*
115507074 ATGCCATATCCCAGATATGGTCTTACACGAAATTTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * *
115507116 ATGCCAATAGCCCAGCTATGGTCTTACGCGAAATCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* *
115507159 ATGCCATATCCCAGATATGGTCTTATACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCA
115507196 ACTAACCCTA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
42 32 0.46
43 37 0.54
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:115510266 original size:44 final size:42
Alignment explanation
Indices: 115510196--115510321 Score: 121
Period size: 44 Copynumber: 3.0 Consensus size: 42
115510186 TTCCGATATG
* *
115510196 AGATTTCGTGTAAGACCAAGTTTGGGATGTTGGCATCAATTT
1 AGATTTCGTGTAAGACCATGTCTGGGATGTTGGCATCAATTT
** ** *
115510238 AAGATTTACGTGTAAGACCATGTCTGGGACATCAGCATCGTATTT
1 -AGATTT-CGTGTAAGACCATGTCTGGGATGTTGGCATC-AATTT
* *
115510283 -GATTTCGTGTAAGACCTTGTCTAGGATAG-TGGCATCAAT
1 AGATTTCGTGTAAGACCATGTCTGGGAT-GTTGGCATCAAT
115510322 ATTTGATCAC
Statistics
Matches: 66, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
41 2 0.03
42 24 0.36
43 11 0.17
44 25 0.38
45 4 0.06
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (42 bp):
AGATTTCGTGTAAGACCATGTCTGGGATGTTGGCATCAATTT
Found at i:115510318 original size:42 final size:41
Alignment explanation
Indices: 115510197--115510360 Score: 116
Period size: 43 Copynumber: 3.9 Consensus size: 41
115510187 TCCGATATGA
* * *
115510197 GATTTCGTGTAAGACCAAGTTTGGGAT-GTTGGCATCAATTT
1 GATTTCGTGTAAGACCATGTCTGGGATAG-TGGCATCTATTT
* *
115510238 AAGATTTACGTGTAAGACCATGTCTGGGACA-TCAGCATCGTATTT
1 --GATTT-CGTGTAAGACCATGTCTGGGATAGT-GGCATC-TATTT
* *
115510283 GATTTCGTGTAAGACCTTGTCTAGGATAGTGGCATCAATATTT
1 GATTTCGTGTAAGACCATGTCTGGGATAGTGGCATC--TATTT
** * ** * *
115510326 GATCACATGTAAGACCACATTTGGGATATTGGCAT
1 GATTTCGTGTAAGACCATGTCTGGGATAGTGGCAT
115510361 TGTATGAGCT
Statistics
Matches: 96, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
42 25 0.26
43 43 0.45
44 24 0.25
45 4 0.04
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (41 bp):
GATTTCGTGTAAGACCATGTCTGGGATAGTGGCATCTATTT
Found at i:115515583 original size:30 final size:30
Alignment explanation
Indices: 115515549--115515608 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
115515539 ATTTAATACG
115515549 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
115515579 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
115515609 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:115522601 original size:46 final size:46
Alignment explanation
Indices: 115522534--115522704 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
115522524 AACCCGCCCC
*
115522534 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
115522580 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
115522628 TCA-CGAACTCGGACT-AACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
115522672 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
115522705 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 2 0.02
44 1 0.01
45 11 0.10
46 64 0.61
47 11 0.10
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Done.