Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 377 of 433
Found at i:117921513 original size:29 final size:29
Alignment explanation
Indices: 117921480--117921611 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
117921470 GTGACGAGAT
117921480 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
117921509 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
117921538 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
117921567 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
117921596 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
117921612 AGTTCGGAGG
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:117924712 original size:21 final size:20
Alignment explanation
Indices: 117924688--117924728 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
117924678 ACTTGTATAA
117924688 CTATCATCAAACATTCAAAAT
1 CTATCATCAAACA-TCAAAAT
* *
117924709 CTATCATTAAATATCAAAAT
1 CTATCATCAAACATCAAAAT
117924729 ACTCGTGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.32
Consensus pattern (20 bp):
CTATCATCAAACATCAAAAT
Found at i:117931864 original size:18 final size:17
Alignment explanation
Indices: 117931838--117931953 Score: 76
Period size: 17 Copynumber: 6.4 Consensus size: 17
117931828 TCTTTATAAA
*
117931838 TTTTGTTATATGTTATAT
1 TTTTATTATAT-TTATAT
*
117931856 TTTTATTATATATATTAAT
1 TTTTATTATATTTA-T-AT
117931875 TATTCTATTATATTTATA-
1 T-TT-TATTATATTTATAT
117931893 TTTTATTATATGTTATAT
1 TTTTATTATAT-TTATAT
117931911 ATTTT-TTACTATATATATAT
1 -TTTTATTA-TAT-T-TATAT
* *
117931931 TATTTATTTTA-CTATAT
1 T-TTTATTATATTTATAT
117931948 TTTTAT
1 TTTTAT
117931954 ATGTAAAATT
Statistics
Matches: 81, Mismatches: 6, Indels: 24
0.73 0.05 0.22
Matches are distributed among these distances:
16 13 0.16
17 15 0.19
18 15 0.19
19 13 0.16
20 13 0.16
21 12 0.15
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (17 bp):
TTTTATTATATTTATAT
Found at i:117931913 original size:19 final size:18
Alignment explanation
Indices: 117931830--117931950 Score: 83
Period size: 18 Copynumber: 6.7 Consensus size: 18
117931820 TATATGCATC
* *
117931830 TTTATAAATTTTGTTATA
1 TTTATATATTTTATTATA
117931848 TGTTATAT-TTTTATTATA
1 T-TTATATATTTTATTATA
* *
117931866 TATATTAATTATTCTATTATA
1 TTTA-T-A-TATTTTATTATA
117931887 -TT-TATATTTTATTATA
1 TTTATATATTTTATTATA
117931903 TGTTATATATTTT-TTACTA
1 T-TTATATATTTTATTA-TA
* *
117931922 TATATATATTAT-TTAT-
1 TTTATATATTTTATTATA
117931938 TTTACTATATTTT
1 TTTA-TATATTTT
117931951 TATATGTAAA
Statistics
Matches: 83, Mismatches: 10, Indels: 21
0.73 0.09 0.18
Matches are distributed among these distances:
16 14 0.17
17 11 0.13
18 30 0.36
19 17 0.20
20 2 0.02
21 9 0.11
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTATATATTTTATTATA
Found at i:117931924 original size:37 final size:36
Alignment explanation
Indices: 117931844--117931951 Score: 96
Period size: 37 Copynumber: 2.9 Consensus size: 36
117931834 TAAATTTTGT
* * *
117931844 TATATGTTATATTTTTATTATATATAT-TAATTATTCTAT
1 TATAT-TTATA-TTTTATTATATTTATAT-ATT-TTTTAC
117931883 TATATTTATATTTTATTATATGTTATATATTTTTTAC
1 TATATTTATATTTTATTATAT-TTATATATTTTTTAC
* *
117931920 TATATATATATTAT-TTAT-TTTACTATATTTTT
1 TATATTTATATTTTATTATATTTA-TATATTTTT
117931952 ATATGTAAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
34 3 0.05
35 10 0.16
36 4 0.07
37 27 0.44
38 11 0.18
39 6 0.10
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (36 bp):
TATATTTATATTTTATTATATTTATATATTTTTTAC
Found at i:117931934 original size:21 final size:21
Alignment explanation
Indices: 117931844--117931947 Score: 76
Period size: 21 Copynumber: 5.0 Consensus size: 21
117931834 TAAATTTTGT
*
117931844 TATATGTTATATTTTTA-T-TA
1 TATATATTAT-TTTTTACTATA
* *
117931864 TATATATTAATTATT-CTAT-
1 TATATATTATTTTTTACTATA
* *
117931883 TATAT-TTATATTTTATTATA
1 TATATATTATTTTTTACTATA
*
117931903 TGT-TATATATTTTTTACTATA
1 TATATAT-TATTTTTTACTATA
117931924 TATATATTATTTATTTTACTATA
1 TATATATTA-TT-TTTTACTATA
117931947 T
1 T
117931948 TTTTATATGT
Statistics
Matches: 64, Mismatches: 11, Indels: 15
0.71 0.12 0.17
Matches are distributed among these distances:
18 6 0.09
19 14 0.22
20 12 0.19
21 16 0.25
22 5 0.08
23 11 0.17
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (21 bp):
TATATATTATTTTTTACTATA
Found at i:117931947 original size:60 final size:55
Alignment explanation
Indices: 117931837--117931949 Score: 145
Period size: 60 Copynumber: 2.0 Consensus size: 55
117931827 ATCTTTATAA
* *
117931837 ATTTTGTTATATGTTATATTTTTATTATATATATTAATTATTCTATTATATTTAT
1 ATTTTATTATATGTTATATTTTTATTATATATATTAATTATTCTACTATATTTAT
* *
117931892 ATTTTATTATATGTTATATATTTTTTACTATATATATATTATTTATTTTACTATATTT
1 ATTTTATTATATG-T-TATA-TTTTTA-T-TATATATATTAATTATTCTACTATATTT
117931950 TTATATGTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
55 12 0.24
56 1 0.02
57 4 0.08
58 6 0.12
59 1 0.02
60 25 0.51
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (55 bp):
ATTTTATTATATGTTATATTTTTATTATATATATTAATTATTCTACTATATTTAT
Found at i:117931952 original size:55 final size:55
Alignment explanation
Indices: 117931832--117931953 Score: 144
Period size: 55 Copynumber: 2.2 Consensus size: 55
117931822 TATGCATCTT
* *
117931832 TATAAATTTTGTTATATGTTATATTTTTATTATATATATTAATTATTCTATTATA
1 TATATATTTTATTATATGTTATATTTTTATTATATATATTAATTATTCTATTATA
* *
117931887 TTTATATTTTATTATATGTTATATATTTT-TTACTATATA-TATATTATT-TATTTTA
1 TATATATTTTATTATATGTTATAT-TTTTATTA-TATATATTA-ATTATTCTATTATA
117931942 CTATAT-TTTTAT
1 -TATATATTTTAT
117931954 ATGTAAAATT
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
55 38 0.66
56 20 0.34
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (55 bp):
TATATATTTTATTATATGTTATATTTTTATTATATATATTAATTATTCTATTATA
Found at i:117931954 original size:25 final size:24
Alignment explanation
Indices: 117931882--117931955 Score: 68
Period size: 23 Copynumber: 3.2 Consensus size: 24
117931872 AATTATTCTA
* * *
117931882 TTATATT-TATATTTTATTATATG
1 TTATATTATTTATTTTACTATATT
117931905 TTATA-TA-TT-TTTTACTATA-T
1 TTATATTATTTATTTTACTATATT
*
117931925 ATATATTATTTATTTTACTATATTT
1 TTATATTATTTATTTTACTATA-TT
117931950 TTATAT
1 TTATAT
117931956 GTAAAATTAC
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
20 4 0.10
21 11 0.28
22 4 0.10
23 15 0.38
25 6 0.15
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (24 bp):
TTATATTATTTATTTTACTATATT
Found at i:117944349 original size:44 final size:44
Alignment explanation
Indices: 117944280--117944702 Score: 609
Period size: 44 Copynumber: 9.6 Consensus size: 44
117944270 CGTTTACAAG
*
117944280 GAGCAGATCGAAGACATAGCAGATTTGGCATCTCTGTATTGTCAGA
1 GAGCAGATCGAAG--ATAGCAGATTTGGCGTCTCTGTATTGTCAGA
*
117944326 GAGC-GAATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAG-ATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* *
117944370 GAGCAGATCGAAGATAGTAGATTTGGCGTCTCTATATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* * * * *
117944414 GAAC-GAATCGAAGATAGTAGATTTGGCATCTCTATGTTGTCAGA
1 GAGCAG-ATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* *
117944458 GAGCAGACCGAAGATAGCAGATTTGGCGTCTCTGTATTGTTAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
*
117944502 GAGC-GAATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
1 GAGCAG-ATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* *
117944546 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTATCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
*
117944590 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCCGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
*
117944634 GAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* * *
117944678 GAGCAGATCAAAAATAACAGATTTG
1 GAGCAGATCGAAGATAGCAGATTTG
117944703 ATGTTCCTAA
Statistics
Matches: 345, Mismatches: 26, Indels: 14
0.90 0.07 0.04
Matches are distributed among these distances:
43 2 0.01
44 329 0.95
45 4 0.01
46 10 0.03
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (44 bp):
GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
Found at i:117946446 original size:19 final size:18
Alignment explanation
Indices: 117946363--117946483 Score: 92
Period size: 18 Copynumber: 6.7 Consensus size: 18
117946353 TATATGCATC
*
117946363 TTTATAAATTTTATTATA
1 TTTATATATTTTATTATA
117946381 TGTTATAT-TTTTATTATA
1 T-TTATATATTTTATTATA
* *
117946399 TATATTAATTATTCTATTATA
1 TTTA-T-A-TATTTTATTATA
117946420 -TT-TATATTTTATTATA
1 TTTATATATTTTATTATA
117946436 TGTTATATATTTT-TTACTA
1 T-TTATATATTTTATTA-TA
* *
117946455 TATATATATTAT-TTAT-
1 TTTATATATTTTATTATA
117946471 TTTACTATATTTT
1 TTTA-TATATTTT
117946484 TATATGTAAA
Statistics
Matches: 84, Mismatches: 9, Indels: 21
0.74 0.08 0.18
Matches are distributed among these distances:
16 14 0.17
17 11 0.13
18 31 0.37
19 17 0.20
20 2 0.02
21 9 0.11
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTATATATTTTATTATA
Found at i:117946467 original size:21 final size:21
Alignment explanation
Indices: 117946377--117946480 Score: 76
Period size: 21 Copynumber: 5.0 Consensus size: 21
117946367 TAAATTTTAT
*
117946377 TATATGTTATATTTTTA-T-TA
1 TATATATTAT-TTTTTACTATA
* *
117946397 TATATATTAATTATT-CTAT-
1 TATATATTATTTTTTACTATA
* *
117946416 TATAT-TTATATTTTATTATA
1 TATATATTATTTTTTACTATA
*
117946436 TGT-TATATATTTTTTACTATA
1 TATATAT-TATTTTTTACTATA
117946457 TATATATTATTTATTTTACTATA
1 TATATATTA-TT-TTTTACTATA
117946480 T
1 T
117946481 TTTTATATGT
Statistics
Matches: 64, Mismatches: 11, Indels: 15
0.71 0.12 0.17
Matches are distributed among these distances:
18 6 0.09
19 14 0.22
20 12 0.19
21 16 0.25
22 5 0.08
23 11 0.17
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (21 bp):
TATATATTATTTTTTACTATA
Found at i:117946480 original size:60 final size:55
Alignment explanation
Indices: 117946370--117946482 Score: 154
Period size: 60 Copynumber: 2.0 Consensus size: 55
117946360 ATCTTTATAA
*
117946370 ATTTTATTATATGTTATATTTTTATTATATATATTAATTATTCTATTATATTTAT
1 ATTTTATTATATGTTATATTTTTATTATATATATTAATTATTCTACTATATTTAT
* *
117946425 ATTTTATTATATGTTATATATTTTTTACTATATATATATTATTTATTTTACTATATTT
1 ATTTTATTATATG-T-TATA-TTTTTA-T-TATATATATTAATTATTCTACTATATTT
117946483 TTATATGTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
55 13 0.26
56 1 0.02
57 4 0.08
58 6 0.12
59 1 0.02
60 25 0.50
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.64
Consensus pattern (55 bp):
ATTTTATTATATGTTATATTTTTATTATATATATTAATTATTCTACTATATTTAT
Found at i:117946485 original size:55 final size:55
Alignment explanation
Indices: 117946365--117946486 Score: 153
Period size: 55 Copynumber: 2.2 Consensus size: 55
117946355 TATGCATCTT
*
117946365 TATAAATTTTATTATATGTTATATTTTTATTATATATATTAATTATTCTATTATA
1 TATATATTTTATTATATGTTATATTTTTATTATATATATTAATTATTCTATTATA
* *
117946420 TTTATATTTTATTATATGTTATATATTTT-TTACTATATA-TATATTATT-TATTTTA
1 TATATATTTTATTATATGTTATAT-TTTTATTA-TATATATTA-ATTATTCTATTATA
117946475 CTATAT-TTTTAT
1 -TATATATTTTAT
117946487 ATGTAAAATT
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
55 39 0.66
56 20 0.34
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (55 bp):
TATATATTTTATTATATGTTATATTTTTATTATATATATTAATTATTCTATTATA
Found at i:117946487 original size:25 final size:24
Alignment explanation
Indices: 117946415--117946488 Score: 68
Period size: 23 Copynumber: 3.2 Consensus size: 24
117946405 AATTATTCTA
* * *
117946415 TTATATT-TATATTTTATTATATG
1 TTATATTATTTATTTTACTATATT
117946438 TTATA-TA-TT-TTTTACTATA-T
1 TTATATTATTTATTTTACTATATT
*
117946458 ATATATTATTTATTTTACTATATTT
1 TTATATTATTTATTTTACTATA-TT
117946483 TTATAT
1 TTATAT
117946489 GTAAAATTAC
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
20 4 0.10
21 11 0.28
22 4 0.10
23 15 0.38
25 6 0.15
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (24 bp):
TTATATTATTTATTTTACTATATT
Found at i:117947821 original size:24 final size:25
Alignment explanation
Indices: 117947794--117947893 Score: 104
Period size: 24 Copynumber: 4.1 Consensus size: 25
117947784 TGGTTTCAAC
117947794 AATTTACATGGAAAAAAATAA-TTA
1 AATTTACATGGAAAAAAATAATTTA
*
117947818 AATTTGCATGGAAAAAAAGATAATTTA
1 AATTTACATGG-AAAAAA-ATAATTTA
* *
117947845 AA-TGAAAT--AAGAAAAA-AA-TTA
1 AATTTACATGGAA-AAAAATAATTTA
117947866 AATTTACATGGAAAAAAATAATTTA
1 AATTTACATGGAAAAAAATAATTTA
117947891 AAT
1 AAT
117947894 GAAATGACAA
Statistics
Matches: 61, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
21 5 0.08
22 6 0.10
23 8 0.13
24 18 0.30
25 12 0.20
26 7 0.11
27 5 0.08
ACGTcount: A:0.59, C:0.03, G:0.10, T:0.28
Consensus pattern (25 bp):
AATTTACATGGAAAAAAATAATTTA
Found at i:117947866 original size:21 final size:20
Alignment explanation
Indices: 117947842--117947914 Score: 56
Period size: 23 Copynumber: 3.3 Consensus size: 20
117947832 AAAAGATAAT
117947842 TTAAATGAAATAAGAAAAAAA
1 TTAAATGAAATAA-AAAAAAA
* *
117947863 TTAAATTTACATGGAAAAAAATAA
1 TTAAA-TGAAAT--AAAAAAA-AA
*
117947887 TTTAAATGAAATGACAAAAAAA
1 -TTAAATGAAAT-AAAAAAAAA
117947909 TTAAAT
1 TTAAAT
117947915 TAAAATGGGA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
21 11 0.26
22 6 0.14
23 12 0.29
24 8 0.19
25 5 0.12
ACGTcount: A:0.63, C:0.03, G:0.08, T:0.26
Consensus pattern (20 bp):
TTAAATGAAATAAAAAAAAA
Found at i:117947869 original size:27 final size:27
Alignment explanation
Indices: 117947839--117947995 Score: 92
Period size: 27 Copynumber: 6.4 Consensus size: 27
117947829 AAAAAAAGAT
117947839 AATTTAAATGAAATAAGAAAAAAATTA
1 AATTTAAATGAAATAAGAAAAAAATTA
*
117947866 AATTTACATG------GAAAAAAA-T-
1 AATTTAAATGAAATAAGAAAAAAATTA
* *
117947885 AATTTAAATGAAATGACAAAAAAATTA
1 AATTTAAATGAAATAAGAAAAAAATTA
* ** * *
117947912 AATTAAAATG--GGAAG--ATAGA-T-
1 AATTTAAATGAAATAAGAAAAAAATTA
* *
117947933 AATTTAAATGAAATGAGAAAAAATTTA
1 AATTTAAATGAAATAAGAAAAAAATTA
* *
117947960 AACTTAAATGAAA-AAGAAAAAAAATA
1 AATTTAAATGAAATAAGAAAAAAATTA
*
117947986 AATTAAAATG
1 AATTTAAATG
117947996 GAAAGAAAGA
Statistics
Matches: 93, Mismatches: 23, Indels: 29
0.64 0.16 0.20
Matches are distributed among these distances:
19 9 0.10
20 1 0.01
21 17 0.18
22 1 0.01
23 5 0.05
25 10 0.11
26 20 0.22
27 30 0.32
ACGTcount: A:0.62, C:0.02, G:0.11, T:0.25
Consensus pattern (27 bp):
AATTTAAATGAAATAAGAAAAAAATTA
Found at i:117947869 original size:48 final size:47
Alignment explanation
Indices: 117947807--117947974 Score: 205
Period size: 48 Copynumber: 3.6 Consensus size: 47
117947797 TTACATGGAA
* *
117947807 AAAAATAATTAAATTTGCATGGAAAAAAAGATAATTTAAATGAAATAAG
1 AAAAA-AATTAAATTTACATGG-AAAAAAGATAATTTAAATGAAATGAG
*
117947856 AAAAAAATTAAATTTACATGGAAAAAA-ATAATTTAAATGAAATGAC
1 AAAAAAATTAAATTTACATGGAAAAAAGATAATTTAAATGAAATGAG
* * * *
117947902 AAAAAAATTAAATTAAAATGGGAAGATAGATAATTTAAATGAAATGAG
1 AAAAAAATTAAATTTACAT-GGAAAAAAGATAATTTAAATGAAATGAG
* * *
117947950 AAAAAATTTAAACTTAAAT-GAAAAA
1 AAAAAAATTAAATTTACATGGAAAAA
117947975 GAAAAAAAAT
Statistics
Matches: 104, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
46 38 0.37
47 12 0.12
48 49 0.47
49 5 0.05
ACGTcount: A:0.61, C:0.02, G:0.11, T:0.26
Consensus pattern (47 bp):
AAAAAAATTAAATTTACATGGAAAAAAGATAATTTAAATGAAATGAG
Found at i:117947957 original size:21 final size:22
Alignment explanation
Indices: 117947839--117947974 Score: 75
Period size: 21 Copynumber: 6.0 Consensus size: 22
117947829 AAAAAAAGAT
*
117947839 AATTTAAA-TGAAATAAGAAAA
1 AATTTAAATTGAAATGAGAAAA
* * * *
117947860 AAATTAAATTTACATGGAAAAAAA
1 AATTTAAATTGAAAT-G-AGAAAA
*
117947884 TAATTTAAA-TGAAATGACAAAA
1 -AATTTAAATTGAAATGAGAAAA
* * *
117947906 AAATTAAATTAAAATGGGAAGATAGAT
1 AATTTAAATTGAAAT--G-AGA-A-AA
117947933 AATTTAAA-TGAAATGAGAAAA
1 AATTTAAATTGAAATGAGAAAA
117947954 AATTTAAACTT-AAATGA-AAAA
1 AATTTAAA-TTGAAATGAGAAAA
117947975 GAAAAAAAAT
Statistics
Matches: 87, Mismatches: 16, Indels: 24
0.69 0.13 0.19
Matches are distributed among these distances:
21 27 0.31
22 21 0.24
23 5 0.06
24 11 0.13
25 9 0.10
26 6 0.07
27 8 0.09
ACGTcount: A:0.61, C:0.02, G:0.11, T:0.26
Consensus pattern (22 bp):
AATTTAAATTGAAATGAGAAAA
Found at i:117947995 original size:26 final size:25
Alignment explanation
Indices: 117947931--117947992 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 25
117947921 GGGAAGATAG
* * *
117947931 ATAATTTAAATGAAATGAGAAAAAAT
1 ATAAATTAAATGAAA-AAGAAAAAAA
*
117947957 TTAAACTTAAATGAAAAAGAAAAAAA
1 ATAAA-TTAAATGAAAAAGAAAAAAA
117947983 ATAAATTAAA
1 ATAAATTAAA
117947993 ATGGAAAGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
25 5 0.17
26 15 0.50
27 10 0.33
ACGTcount: A:0.66, C:0.02, G:0.08, T:0.24
Consensus pattern (25 bp):
ATAAATTAAATGAAAAAGAAAAAAA
Found at i:117950862 original size:9 final size:9
Alignment explanation
Indices: 117950833--117950909 Score: 52
Period size: 9 Copynumber: 8.3 Consensus size: 9
117950823 GTTCTATATA
117950833 TTATTTATT
1 TTATTTATT
**
117950842 TTAAACTATT
1 TT-ATTTATT
117950852 TTATTTATT
1 TTATTTATT
117950861 TTAATTT-TT
1 TT-ATTTATT
117950870 TATATATTA-T
1 T-TAT-TTATT
*
117950880 TTATATTAAT
1 TTAT-TTATT
*
117950890 TT-TTTATA
1 TTATTTATT
117950898 TTATTTATT
1 TTATTTATT
117950907 TTA
1 TTA
117950910 AATTGTTTTA
Statistics
Matches: 54, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
8 5 0.09
9 30 0.56
10 19 0.35
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.69
Consensus pattern (9 bp):
TTATTTATT
Found at i:117950897 original size:13 final size:13
Alignment explanation
Indices: 117950855--117950900 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
117950845 AACTATTTTA
*
117950855 TTTATTTTAATTT
1 TTTATATTAATTT
*
117950868 TTTATA-T-ATTA
1 TTTATATTAATTT
117950879 TTTATATTAATTT
1 TTTATATTAATTT
117950892 TTTATATTA
1 TTTATATTA
117950901 TTTATTTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 9 0.32
12 2 0.07
13 17 0.61
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTATATTAATTT
Found at i:117950950 original size:65 final size:65
Alignment explanation
Indices: 117950829--117950952 Score: 144
Period size: 65 Copynumber: 1.9 Consensus size: 65
117950819 AATAGTTCTA
** ** *
117950829 TATATTATTTATTTTAAACTATTTTATTTATTTTAATTTTTTATATATTATTTATATTAATTTTT
1 TATATTATTTATTTTAAACTATTTTAGATATTTTAATTTTAAATATATTATATATATTAATTTTT
* * *
117950894 TATATTATTTATTTTAAATTGTTTTAGATATTATTTATTTTAAAT-TATT-TCATATATTA
1 TATATTATTTATTTTAAACTATTTTAGATATT-TTAATTTTAAATATATTAT-ATATATTA
117950953 TTTATTTTGA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
64 1 0.02
65 39 0.80
66 9 0.18
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (65 bp):
TATATTATTTATTTTAAACTATTTTAGATATTTTAATTTTAAATATATTATATATATTAATTTTT
Found at i:117950955 original size:52 final size:52
Alignment explanation
Indices: 117950852--117951093 Score: 196
Period size: 52 Copynumber: 4.7 Consensus size: 52
117950842 TTAAACTATT
* *
117950852 TTATTTATTTT-AATT-TTTTATATATTATTTATATT-AATT-TTT--TATA
1 TTATTTATTTTAAATTGTTTTAGATATTATTTATTTTAAATTATTTCATATA
117950898 TTATTTATTTTAAATTGTTTTAGATATTATTTATTTTAAATTATTTCATATA
1 TTATTTATTTTAAATTGTTTTAGATATTATTTATTTTAAATTATTTCATATA
* * ** * * *
117950950 TTATTTATTTTGAACTGCGTTATACATTATTTTATTTTAAAATTGTTTCATATATA
1 TTATTTATTTTAAATTGTTTTAGATATTA-TTTATTTT-AAATTATTTC--ATATA
* * ** ** *
117951006 TTATTTATTTTAGATTTTTTTACG-TATTATTTCCTTTAAAAAATGCTTTATATA
1 TTATTTATTTTAAATTGTTTTA-GATATTATTTATTTTAAATTAT--TTCATATA
* *
117951060 TTATTTGTTTTAAATTGCTTTAG--ATTATTTATTT
1 TTATTTATTTTAAATTGTTTTAGATATTATTTATTT
117951094 CAAACTGTTT
Statistics
Matches: 154, Mismatches: 29, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
46 11 0.07
47 4 0.03
48 18 0.12
49 4 0.03
50 3 0.02
52 36 0.23
53 9 0.06
54 36 0.23
55 6 0.04
56 27 0.18
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.61
Consensus pattern (52 bp):
TTATTTATTTTAAATTGTTTTAGATATTATTTATTTTAAATTATTTCATATA
Found at i:117951035 original size:26 final size:24
Alignment explanation
Indices: 117950852--117951140 Score: 156
Period size: 26 Copynumber: 11.4 Consensus size: 24
117950842 TTAAACTATT
117950852 TTATTTATTTT-AATTTTTTATATA
1 TTATTTATTTTAAATTTTTT-TATA
*
117950876 TTATTTATATT-AA-TTTTTTATA
1 TTATTTATTTTAAATTTTTTTATA
*
117950898 TTATTTATTTTAAATTGTTTTAGATA
1 TTATTTATTTTAAATT-TTTT-TATA
*
117950924 TTATTTATTTTAAATTATTTCATATA
1 TTATTTATTTTAAATT-TTT-TTATA
* ** * *
117950950 TTATTTATTTTGAACTGCGTTATACA
1 TTATTTATTTT-AAAT-TTTTTTATA
117950976 TTATTTTATTTTAAAATTGTTTCATATATA
1 TTA-TTTATTTT-AAATT-TTT--T-TATA
*
117951006 TTATTTATTTTAGATTTTTTTACGTA
1 TTATTTATTTTAAATTTTTTTA--TA
* * * *
117951032 TTATTTCCTTTAAAAAATGCTTTATATA
1 TTATTT-ATTT--TAAAT-TTTTTTATA
* ** *
117951060 TTATTTGTTTTAAATTGCTTTAGA
1 TTATTTATTTTAAATTTTTTTATA
* * *
117951084 TTATTTATTTCAAACTGTTTTGTATC
1 TTATTTATTTTAAA-T-TTTTTTATA
* *
117951110 TTATTTATGTT-AATTTTATT-TA
1 TTATTTATTTTAAATTTTTTTATA
117951132 TTATTTATT
1 TTATTTATT
117951141 GTTTATTTTG
Statistics
Matches: 203, Mismatches: 42, Indels: 42
0.71 0.15 0.15
Matches are distributed among these distances:
22 23 0.11
23 11 0.05
24 32 0.16
25 12 0.06
26 64 0.32
27 27 0.13
28 12 0.06
29 11 0.05
30 11 0.05
ACGTcount: A:0.29, C:0.04, G:0.05, T:0.61
Consensus pattern (24 bp):
TTATTTATTTTAAATTTTTTTATA
Found at i:117951087 original size:108 final size:107
Alignment explanation
Indices: 117950894--117951093 Score: 244
Period size: 108 Copynumber: 1.9 Consensus size: 107
117950884 ATTAATTTTT
* **
117950894 TATATTATTTATTTTAAATTGTTTTAGATATTATTTATTTTAAATTATTTCATATATTATTTATT
1 TATATTATTTATTTTAAATTGTTTTAGATATTATTTACTTTAAAAAATTTCATATATTATTTATT
*
117950959 TTGAACTGCGTTATACATTATTTTATTTTAAAATTGTTTCATA
66 TTAAACTGCGTTATACATTA-TTTATTTTAAAATTGTTTCATA
* * * *
117951002 TATATTATTTATTTTAGATTTTTTTACG-TATTATTTCCTTTAAAAAATGCTTTATATATTATTT
1 TATATTATTTATTTTAAATTGTTTTA-GATATTATTTACTTTAAAAAAT--TTCATATATTATTT
* * *
117951066 GTTTTAAATTGC-TT-TAGATTATTTATTT
63 ATTTTAAACTGCGTTATACATTATTTATTT
117951094 CAAACTGTTT
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
107 7 0.09
108 46 0.59
109 3 0.04
110 22 0.28
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (107 bp):
TATATTATTTATTTTAAATTGTTTTAGATATTATTTACTTTAAAAAATTTCATATATTATTTATT
TTAAACTGCGTTATACATTATTTATTTTAAAATTGTTTCATA
Found at i:117951092 original size:82 final size:79
Alignment explanation
Indices: 117950894--117951093 Score: 190
Period size: 82 Copynumber: 2.5 Consensus size: 79
117950884 ATTAATTTTT
*
117950894 TATATTATTTATTTTAAATTGTTTTAGA-TA-TTATTTATTTTAAATTATTTCATATATTATTTA
1 TATATTATTTATTTTAAATTG-TTTAGATTATTTATTTATTTTAAATTATTTCACATATTATTTA
** *
117950957 TTTTGAACTGCGTTA
65 TTTAAAAATGCGTTA
* * * * * *
117950972 TACATTATTTTATTTTAAAATTGTTT-CATATATATTATTTATTTTAGATTTTTTTACGTATTAT
1 TATATTA-TTTATTTT-AAATTGTTTAGAT-TAT-TTATTTATTTTAAATTATTTCACATATTAT
* *
117951036 TTCCTTTAAAAAATGCTTTA
62 TT-ATTT-AAAAATGCGTTA
*
117951056 TATATTATTTGTTTTAAATTGCTTTAGATTATTTATTT
1 TATATTATTTATTTTAAATTG-TTTAGATTATTTATTT
117951094 CAAACTGTTT
Statistics
Matches: 97, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
78 7 0.07
79 11 0.11
80 8 0.08
82 39 0.40
83 16 0.16
84 16 0.16
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (79 bp):
TATATTATTTATTTTAAATTGTTTAGATTATTTATTTATTTTAAATTATTTCACATATTATTTAT
TTAAAAATGCGTTA
Found at i:117951126 original size:22 final size:23
Alignment explanation
Indices: 117951101--117951150 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
117951091 TTTCAAACTG
*
117951101 TTTTGTATCTTATTTA-TGTTAA
1 TTTTGTATATTATTTATTGTTAA
* * *
117951123 TTTTATTTATTATTTATTGTTTA
1 TTTTGTATATTATTTATTGTTAA
117951146 TTTTG
1 TTTTG
117951151 AACCCCTTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.20, C:0.02, G:0.08, T:0.70
Consensus pattern (23 bp):
TTTTGTATATTATTTATTGTTAA
Found at i:117951219 original size:25 final size:26
Alignment explanation
Indices: 117951185--117951248 Score: 103
Period size: 25 Copynumber: 2.5 Consensus size: 26
117951175 TTAAAAAAAC
*
117951185 TTATATATTATTTATTTCAAACT-TT
1 TTATATATTATTTACTTCAAACTGTT
*
117951210 TTATATATTATTTACTTCAAATTGTT
1 TTATATATTATTTACTTCAAACTGTT
117951236 TTATATATTATTT
1 TTATATATTATTT
117951249 TGTTTCATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
25 21 0.58
26 15 0.42
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (26 bp):
TTATATATTATTTACTTCAAACTGTT
Found at i:117955906 original size:1 final size:1
Alignment explanation
Indices: 117955902--117955968 Score: 53
Period size: 1 Copynumber: 67.0 Consensus size: 1
117955892 ATTTCACTTT
* * * * * * * * *
117955902 AAAAAAAAGAAAAAATAAAAAAACAAAAACAAAAACAAAAAACAAAAACAAAAAAGAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
117955967 AA
1 AA
117955969 GAGAGGCCAA
Statistics
Matches: 48, Mismatches: 18, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.87, C:0.07, G:0.04, T:0.01
Consensus pattern (1 bp):
A
Found at i:117955929 original size:13 final size:12
Alignment explanation
Indices: 117955902--117955968 Score: 73
Period size: 12 Copynumber: 5.5 Consensus size: 12
117955892 ATTTCACTTT
117955902 AAAAAAAAGAAA-
1 AAAAAAAA-AAAC
*
117955914 AAATAAAAAAAC
1 AAAAAAAAAAAC
*
117955926 AAAAACAAAAAC
1 AAAAAAAAAAAC
117955938 AAAAAACAAAAAC
1 AAAAAA-AAAAAC
* *
117955951 AAAAAAGAAAAG
1 AAAAAAAAAAAC
117955963 AAAAAA
1 AAAAAA
117955969 GAGAGGCCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
11 3 0.06
12 32 0.68
13 12 0.26
ACGTcount: A:0.87, C:0.07, G:0.04, T:0.01
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:117955967 original size:6 final size:6
Alignment explanation
Indices: 117955920--117955955 Score: 63
Period size: 6 Copynumber: 5.8 Consensus size: 6
117955910 GAAAAAATAA
117955920 AAAAAC AAAAAC AAAAAC AAAAAAC AAAAAC AAAAA
1 AAAAAC AAAAAC AAAAAC -AAAAAC AAAAAC AAAAA
117955956 AGAAAAGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:117956523 original size:65 final size:65
Alignment explanation
Indices: 117956417--117956540 Score: 203
Period size: 65 Copynumber: 1.9 Consensus size: 65
117956407 TTTAGCAAAG
* * * * *
117956417 TTTGCTATCTTTGATTAATTTATTCGTTTCGAGCTATGCTCTCAATCAATTTCTTTCTTATTGTA
1 TTTGCCATCTTTGATTAACTTATTCGTCTCGAGCTACGCTCTCAATCAATTTCCTTCTTATTGTA
117956482 TTTGCCATCTTTGATTAACTTATTCGTCTCGAGCTACGCTCTCAATCAATTTCCTTCTT
1 TTTGCCATCTTTGATTAACTTATTCGTCTCGAGCTACGCTCTCAATCAATTTCCTTCTT
117956541 GTCCATCATT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 54 1.00
ACGTcount: A:0.19, C:0.22, G:0.10, T:0.48
Consensus pattern (65 bp):
TTTGCCATCTTTGATTAACTTATTCGTCTCGAGCTACGCTCTCAATCAATTTCCTTCTTATTGTA
Found at i:117957195 original size:99 final size:99
Alignment explanation
Indices: 117957077--117957357 Score: 350
Period size: 99 Copynumber: 2.8 Consensus size: 99
117957067 TGAAGTTGTA
* *
117957077 GATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATCAAAGACAGTGAATCTTATTTCCCTGAAGTT
1 GATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATCGAAGACAGCGAATCTTATTTCCCTGAAGTT
*
117957142 GCAGTAGAATAGATTGAAGCTACAAATTATGGTG
66 GCAGTAGAATAGATTGAAGCTACAAATTATGGCG
* *
117957176 GATCTTATCTTCCTGAAGTTGCAGCGGAGCAGA-CTGAAGACAGCGAATCTTATTTCCCTGAAGT
1 GATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATC-GAAGACAGCGAATCTTATTTCCCTGAAGT
* * * * *
117957240 TACACTGGAACAGATTGAAACTACAAATTATGGCG
65 TGCAGTAGAATAGATTGAAGCTACAAATTATGGCG
* * * * * * ** *
117957275 AATCTTATCTTCTTGAAGTTACAGTGAAGCAGATTGAAGCCA-CCAGCCTTATCTCCCTGAAGTT
1 GATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATCGAAGACAGCGAATCTTATTTCCCTGAAGTT
* *
117957339 GCAGTAGAGTAGACTGAAG
66 GCAGTAGAATAGATTGAAG
117957358 ACAGCGAATC
Statistics
Matches: 152, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
98 31 0.20
99 121 0.80
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (99 bp):
GATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATCGAAGACAGCGAATCTTATTTCCCTGAAGTT
GCAGTAGAATAGATTGAAGCTACAAATTATGGCG
Found at i:117957517 original size:144 final size:143
Alignment explanation
Indices: 117957179--117957934 Score: 1023
Period size: 143 Copynumber: 5.3 Consensus size: 143
117957169 TATGGTGGAT
* *
117957179 CTTATCTTCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTACA
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
* * * * *
117957244 CTGGAACAGATTGAAACTACAAATTATGGCGAATCTTATCTTCTTGAAGTTACAGTGAAGCAGAT
66 GTGGAACAGATTGAAGCTAAAAATTATGGCGAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGAT
117957309 TGAAGCCACCAGC
131 TGAAGCCACCAGC
** * * *
117957322 CTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGACAGCGAATCTTATTTCTCTGAAGTTGTT
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTG-C
*
117957387 A-TGGAACAGATTGAAGCTAAAAATTATGGC-AGATCTTATCTTCTTGGAAGTTGTAGTGGAGCA
65 AGTGGAACAGATTGAAGCTAAAAATTATGGCGA-ATCTTATCTTCTT-GAAGTTGCAGTGGAGCA
*
117957450 GATTGAAGCCACCAAC
128 GATTGAAGCCACCAGC
* *
117957466 CTTATCTCCCTGAAGTTGCAGCGGAACAAACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
* * * *
117957531 GTGGAACAGATTGAAACTAAAAATTATGGCGAATCTTACCTTCTTGAAGTTACAGTGAAGCAGAT
66 GTGGAACAGATTGAAGCTAAAAATTATGGCGAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGAT
*
117957596 TGAAGCTACCAGC
131 TGAAGCCACCAGC
*** * * * * *
117957609 CTTATCTCCCTGAAGTTGCAATAGAGTAGACTAAAGACAGCGAATCTTATTTCTCTGAAGTTACT
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
* *
117957674 GTGGAACAGATTGAAGCTACAAATTATGGC-AGATCTTATCTTCTTGGAAGTTGTAGTGGAGCAG
66 GTGGAACAGATTGAAGCTAAAAATTATGGCGA-ATCTTATCTTCTT-GAAGTTGCAGTGGAGCAG
117957738 ATTGAAGCCACCAGC
129 ATTGAAGCCACCAGC
* * * *
117957753 CTTATCTCCCTAAAGTTGCAACGGAGCAGACTGAAGACAGCAAATCTTATTTCCCTGACGTTGCA
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
* * ** * * *
117957818 GTGGAACATATTAAAGCTATGAATTATGACGAATCTTATGTTCTTGAAGTTGCAGTGGAACAGAT
66 GTGGAACAGATTGAAGCTAAAAATTATGGCGAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGAT
117957883 TGAAGCCACCAGC
131 TGAAGCCACCAGC
* * * * *
117957896 CTTATCTCCCTAAAATTGTAGCAGAGCAGATTGAAGACA
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACA
117957935 ACAAATCCCA
Statistics
Matches: 538, Mismatches: 67, Indels: 16
0.87 0.11 0.03
Matches are distributed among these distances:
142 2 0.00
143 286 0.53
144 248 0.46
145 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (143 bp):
CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
GTGGAACAGATTGAAGCTAAAAATTATGGCGAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGAT
TGAAGCCACCAGC
Found at i:117957594 original size:287 final size:287
Alignment explanation
Indices: 117957179--117957934 Score: 1201
Period size: 287 Copynumber: 2.6 Consensus size: 287
117957169 TATGGTGGAT
* *
117957179 CTTATCTTCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTACA
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
* *
117957244 CTGGAACAGATTGAAACTACAAATTATGGCGAATCTTATCTTCTTGAAGTTACAGTGAAGCAGAT
66 GTGGAACAGATTGAAACTAAAAATTATGGCGAATCTTATCTTCTTGAAGTTACAGTGAAGCAGAT
117957309 TGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGACAGCGAATCTTATTT
131 TGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGACAGCGAATCTTATTT
**
117957374 CTCTGAAGTTGTTATGGAACAGATTGAAGCTAAAAATTATGGCAGATCTTATCTTCTTGGAAGTT
196 CTCTGAAGTTACTATGGAACAGATTGAAGCTAAAAATTATGGCAGATCTTATCTTCTTGGAAGTT
117957439 GTAGTGGAGCAGATTGAAGCCACCAAC
261 GTAGTGGAGCAGATTGAAGCCACCAAC
* *
117957466 CTTATCTCCCTGAAGTTGCAGCGGAACAAACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
*
117957531 GTGGAACAGATTGAAACTAAAAATTATGGCGAATCTTACCTTCTTGAAGTTACAGTGAAGCAGAT
66 GTGGAACAGATTGAAACTAAAAATTATGGCGAATCTTATCTTCTTGAAGTTACAGTGAAGCAGAT
* * *
117957596 TGAAGCTACCAGCCTTATCTCCCTGAAGTTGCAATAGAGTAGACTAAAGACAGCGAATCTTATTT
131 TGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGACAGCGAATCTTATTT
* *
117957661 CTCTGAAGTTACTGTGGAACAGATTGAAGCTACAAATTATGGCAGATCTTATCTTCTTGGAAGTT
196 CTCTGAAGTTACTATGGAACAGATTGAAGCTAAAAATTATGGCAGATCTTATCTTCTTGGAAGTT
*
117957726 GTAGTGGAGCAGATTGAAGCCACCAGC
261 GTAGTGGAGCAGATTGAAGCCACCAAC
* * * *
117957753 CTTATCTCCCTAAAGTTGCAACGGAGCAGACTGAAGACAGCAAATCTTATTTCCCTGACGTTGCA
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
* ** * * *
117957818 GTGGAACATATT-AAAGCTATGAATTATGACGAATCTTATGTTCTTGAAGTTGCAGTGGAA-CAG
66 GTGGAACAGATTGAAA-CTAAAAATTATGGCGAATCTTATCTTCTTGAAGTTACAGT-GAAGCAG
* * * * * *
117957881 ATTGAAGCCACCAGCCTTATCTCCCTAAAATTGTAGCAGAGCAGATTGAAGACA
129 ATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGACA
117957935 ACAAATCCCA
Statistics
Matches: 430, Mismatches: 37, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
286 3 0.01
287 424 0.99
288 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (287 bp):
CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGCA
GTGGAACAGATTGAAACTAAAAATTATGGCGAATCTTATCTTCTTGAAGTTACAGTGAAGCAGAT
TGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGACAGCGAATCTTATTT
CTCTGAAGTTACTATGGAACAGATTGAAGCTAAAAATTATGGCAGATCTTATCTTCTTGGAAGTT
GTAGTGGAGCAGATTGAAGCCACCAAC
Found at i:117958354 original size:14 final size:15
Alignment explanation
Indices: 117958330--117958372 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
117958320 TAAATTAAAT
117958330 AAGTCCAATTTATCA
1 AAGTCCAATTTATCA
117958345 AAGTCC-ATTTAT--
1 AAGTCCAATTTATCA
117958357 AAGTCCAATTTA-CA
1 AAGTCCAATTTATCA
117958371 AA
1 AA
117958373 CCCAATATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
12 6 0.24
13 5 0.20
14 8 0.32
15 6 0.24
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.33
Consensus pattern (15 bp):
AAGTCCAATTTATCA
Found at i:117959607 original size:43 final size:44
Alignment explanation
Indices: 117959544--117959633 Score: 128
Period size: 43 Copynumber: 2.1 Consensus size: 44
117959534 TTATTTTTTA
* *
117959544 TTATTCATTTTAATAGTTTTATATGTTATTTATTTTAAACTATT
1 TTATTCATTTTAATAGTTTTATATATTATTTATATTAAACTATT
* * *
117959588 TTATTTATTTTAAT-TTTTTATATATTATTTATATTAAACTGTT
1 TTATTCATTTTAATAGTTTTATATATTATTTATATTAAACTATT
117959631 TTA
1 TTA
117959634 GATATTATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
43 28 0.68
44 13 0.32
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.63
Consensus pattern (44 bp):
TTATTCATTTTAATAGTTTTATATATTATTTATATTAAACTATT
Found at i:117959724 original size:30 final size:26
Alignment explanation
Indices: 117959588--117959836 Score: 209
Period size: 26 Copynumber: 9.5 Consensus size: 26
117959578 TTAAACTATT
*
117959588 TTATTTATTTT-AA-TTTTTTATATA
1 TTATTTATTTTAAACTGTTTTATATA
* *
117959612 TTATTTATATTAAACTGTTTTAGATA
1 TTATTTATTTTAAACTGTTTTATATA
* *
117959638 TTATTTATTTTAAATTGTTTCATATA
1 TTATTTATTTTAAACTGTTTTATATA
* * *
117959664 TTATTTATTTTGAACTGCTTTATACA
1 TTATTTATTTTAAACTGTTTTATATA
117959690 TTATTTTATTTTAAAACTGTTTCATATATA
1 TTA-TTTATTTT-AAACTGTTT--TATATA
* * * *
117959720 TTATTTATTTTAGATTTTTTTACATA
1 TTATTTATTTTAAACTGTTTTATATA
* * * *
117959746 TTATTTCCTTTAAAAAATGCTTTATATA
1 TTATTT-ATTT-TAAACTGTTTTATATA
* * *
117959774 TTATTTATTTTAAATTG-CTT-TAGA
1 TTATTTATTTTAAACTGTTTTATATA
* * *
117959798 TTATTTATTTCAAACTGTTTTGTATT
1 TTATTTATTTTAAACTGTTTTATATA
*
117959824 TTATTTATGTTAA
1 TTATTTATTTTAA
117959837 TTTTATTTAT
Statistics
Matches: 177, Mismatches: 38, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
24 28 0.16
25 6 0.03
26 84 0.47
27 14 0.08
28 29 0.16
29 8 0.05
30 8 0.05
ACGTcount: A:0.30, C:0.06, G:0.05, T:0.59
Consensus pattern (26 bp):
TTATTTATTTTAAACTGTTTTATATA
Found at i:117959744 original size:54 final size:52
Alignment explanation
Indices: 117959637--117959854 Score: 157
Period size: 54 Copynumber: 4.2 Consensus size: 52
117959627 TGTTTTAGAT
* * *
117959637 ATTATTTATTTT-AAATTGTTTC-ATATATTATTTATTTT-GAACTGCTTTATAC
1 ATTATTTATTTTAAAACTGTTTCTATATATTATTTATTTTAG-A-T-TTTTTTAC
117959689 ATTATTTTATTTTAAAACTGTTTCATATATATTATTTATTTTAGATTTTTTTAC
1 ATTA-TTTATTTTAAAACTGTTTC-TATATATTATTTATTTTAGATTTTTTTAC
* * * * * ** *
117959743 ATATTATTTCCTTTAAAAAATGCTT-TATATATTATTTATTTTAAATTGCTTTAG
1 --ATTATTT-ATTTTAAAACTGTTTCTATATATTATTTATTTTAGATTTTTTTAC
* * * *
117959797 ATTATTTA-TTTCAAACTGTTT-TGTATTTTATTTATGTTA-ATTTTATTT--
1 ATTATTTATTTTAAAACTGTTTCTATATATTATTTATTTTAGATTTT-TTTAC
117959845 ATTATTTATT
1 ATTATTTATT
117959855 ATTTATTATT
Statistics
Matches: 135, Mismatches: 21, Indels: 23
0.75 0.12 0.13
Matches are distributed among these distances:
48 8 0.06
49 4 0.03
50 27 0.20
52 11 0.08
53 8 0.06
54 40 0.30
55 4 0.03
56 32 0.24
57 1 0.01
ACGTcount: A:0.29, C:0.06, G:0.05, T:0.60
Consensus pattern (52 bp):
ATTATTTATTTTAAAACTGTTTCTATATATTATTTATTTTAGATTTTTTTAC
Found at i:117959801 original size:108 final size:106
Alignment explanation
Indices: 117959606--117959817 Score: 250
Period size: 108 Copynumber: 2.0 Consensus size: 106
117959596 TTTAATTTTT
* * *
117959606 TATATATTATTTATATTAAACTGTTTTAGATATTATTTATTTTAAATTGTTTCATATATTATTTA
1 TATATATTATTTATATTAAACTGTTTTACATATTATTTATTTAAAAATGTTTCATATATTATTTA
*
117959671 TTTTGAACTGCTTTATACATTATTTTATTTTAAAACTGTTTCA
66 TTTTAAACTGCTTTATACATTA-TTTA-TTTAAAACTGTTTCA
* * * * *
117959714 TATATATTATTTATTTTAGATTTTTTTACATATTATTTCCTTTAAAAAATGCTTT-ATATATTAT
1 TATATATTATTTATATTAAACTGTTTTACATATTATTT-ATTT-AAAAATG-TTTCATATATTAT
* * *
117959778 TTATTTTAAATTGC-TT-TAGATTATTTATTTCAAACTGTTT
63 TTATTTTAAACTGCTTTATACATTATTTATTTAAAACTGTTT
117959818 TGTATTTTAT
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
106 12 0.13
107 4 0.04
108 39 0.44
109 5 0.06
110 26 0.29
111 3 0.03
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.57
Consensus pattern (106 bp):
TATATATTATTTATATTAAACTGTTTTACATATTATTTATTTAAAAATGTTTCATATATTATTTA
TTTTAAACTGCTTTATACATTATTTATTTAAAACTGTTTCA
Found at i:117959851 original size:7 final size:7
Alignment explanation
Indices: 117959839--117959868 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
117959829 TATGTTAATT
117959839 TTATTTA
1 TTATTTA
117959846 TTATTTA
1 TTATTTA
117959853 TTATTTA
1 TTATTTA
117959860 TTATTTA
1 TTATTTA
117959867 TT
1 TT
117959869 TTGAACCCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTATTTA
Found at i:117959940 original size:25 final size:26
Alignment explanation
Indices: 117959906--117959969 Score: 85
Period size: 25 Copynumber: 2.5 Consensus size: 26
117959896 TTAAAAAAAA
*
117959906 TTATATATTATTTATTTCAAACT-TT
1 TTATATATTATTTACTTCAAACTGTT
* * *
117959931 TTATAAATTATTTACTTCGAATTGTT
1 TTATATATTATTTACTTCAAACTGTT
117959957 TTATATATTATTT
1 TTATATATTATTT
117959970 TGTTTCATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
25 19 0.58
26 14 0.42
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.59
Consensus pattern (26 bp):
TTATATATTATTTACTTCAAACTGTT
Found at i:117965555 original size:30 final size:29
Alignment explanation
Indices: 117965515--117965572 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
117965505 ACAAATTAGA
117965515 TTTTTTTTATAA-ATTAATATAATTTTATG
1 TTTTTTTTATAATATTAA-ATAATTTTATG
117965544 TTTTCTTTTATAATATTAAATAATTTTAT
1 TTTT-TTTTATAATATTAAATAATTTTAT
117965573 ACATATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 4 0.15
30 18 0.67
31 5 0.19
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (29 bp):
TTTTTTTTATAATATTAAATAATTTTATG
Found at i:117965583 original size:30 final size:29
Alignment explanation
Indices: 117965518--117965584 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
117965508 AATTAGATTT
** *
117965518 TTTTTATAAATTAATATAATTTTATGTTT
1 TTTTTATAAATTAATATAATTTTATCATA
117965547 TCTTTTATAATATTAA-ATAATTTTATACATA
1 T-TTTTATAA-ATTAATATAATTTTAT-CATA
117965578 TTTTTAT
1 TTTTTAT
117965585 TATTTTAATG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
29 1 0.03
30 24 0.75
31 7 0.22
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (29 bp):
TTTTTATAAATTAATATAATTTTATCATA
Found at i:117970625 original size:24 final size:24
Alignment explanation
Indices: 117970598--117970657 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
117970588 ATGTATTAAA
117970598 TATATTTAATTATTATCATGGTTT
1 TATATTTAATTATTATCATGGTTT
** * *
117970622 TATATAAAACTATTATTATGGTTT
1 TATATTTAATTATTATCATGGTTT
*
117970646 TATAATT-ATTAT
1 TATATTTAATTAT
117970658 GATTATTTAA
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
23 4 0.14
24 24 0.86
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.55
Consensus pattern (24 bp):
TATATTTAATTATTATCATGGTTT
Found at i:117978271 original size:65 final size:65
Alignment explanation
Indices: 117978197--117978324 Score: 238
Period size: 65 Copynumber: 2.0 Consensus size: 65
117978187 TTTCTTAGAC
*
117978197 GGAAATTCACATTTTTATATTAATGCCATAGAAAACAGTTAGGTTAAATAGGCATATTAAAAGTG
1 GGAAATTCACATTTTTATATTAATGCAATAGAAAACAGTTAGGTTAAATAGGCATATTAAAAGTG
*
117978262 GGAAATTCACGTTTTTATATTAATGCAATAGAAAACAGTTAGGTTAAATAGGCATATTAAAAG
1 GGAAATTCACATTTTTATATTAATGCAATAGAAAACAGTTAGGTTAAATAGGCATATTAAAAG
117978325 AGGAGAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.42, C:0.09, G:0.17, T:0.32
Consensus pattern (65 bp):
GGAAATTCACATTTTTATATTAATGCAATAGAAAACAGTTAGGTTAAATAGGCATATTAAAAGTG
Found at i:117983361 original size:26 final size:27
Alignment explanation
Indices: 117983311--117983370 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
117983301 GGAAAAGTTT
117983311 TAATTTAATTTAATTTGATT-TTTTTA
1 TAATTTAATTTAATTTGATTCTTTTTA
*
117983337 TAATTTAATTCT-ATTCT-ATTCTTTTTT
1 TAATTTAATT-TAATT-TGATTCTTTTTA
117983364 TAATTTA
1 TAATTTA
117983371 GTTTTGTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 16 0.53
27 14 0.47
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (27 bp):
TAATTTAATTTAATTTGATTCTTTTTA
Found at i:117986891 original size:2 final size:2
Alignment explanation
Indices: 117986884--117986908 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
117986874 TTAGGCAATT
117986884 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
117986909 GTATTTTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:117990391 original size:18 final size:19
Alignment explanation
Indices: 117990368--117990403 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
117990358 TGATTTTGGT
*
117990368 TTTCATTTTTTAT-TAGGA
1 TTTCATTTATTATCTAGGA
117990386 TTTCATTTATTATCTAGG
1 TTTCATTTATTATCTAGG
117990404 TTGTCTCTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.22, C:0.08, G:0.11, T:0.58
Consensus pattern (19 bp):
TTTCATTTATTATCTAGGA
Found at i:117991232 original size:24 final size:24
Alignment explanation
Indices: 117991205--117991256 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
117991195 TAAATACAAA
117991205 TAACATAATAGTGAAATGAGAAAT
1 TAACATAATAGTGAAATGAGAAAT
117991229 TAACATAATAGTGAAATGAGAAAT
1 TAACATAATAGTGAAATGAGAAAT
117991253 TAAC
1 TAAC
117991257 TTTATTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.54, C:0.06, G:0.15, T:0.25
Consensus pattern (24 bp):
TAACATAATAGTGAAATGAGAAAT
Found at i:117997697 original size:19 final size:19
Alignment explanation
Indices: 117997675--117997718 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
117997665 AAAAATCATT
117997675 TAAAAATTATAAAAAATTG
1 TAAAAATTATAAAAAATTG
** * *
117997694 TAAATTTTTTTAAAAATTG
1 TAAAAATTATAAAAAATTG
117997713 TAAAAA
1 TAAAAA
117997719 AATATAAAAT
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.39
Consensus pattern (19 bp):
TAAAAATTATAAAAAATTG
Found at i:117998030 original size:28 final size:28
Alignment explanation
Indices: 117997999--117998055 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
117997989 TTTTTGATGT
* *
117997999 ATTTTATATTTTTTATGATTTTTATAAA
1 ATTTTATATTTTTTATAATTTCTATAAA
117998027 ATTTTATATTTTTTATAATTTCTATAAA
1 ATTTTATATTTTTTATAATTTCTATAAA
117998055 A
1 A
117998056 AATTTCTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (28 bp):
ATTTTATATTTTTTATAATTTCTATAAA
Found at i:117998052 original size:18 final size:17
Alignment explanation
Indices: 117998009--117998052 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
117997999 ATTTTATATT
*
117998009 TTTTATGATTTTTATAAAA
1 TTTTAT-ATTTTT-TATAA
117998028 TTTTATATTTTTTATAA
1 TTTTATATTTTTTATAA
117998045 TTTCTATA
1 TTT-TATA
117998053 AAAAATTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 7 0.30
18 10 0.43
19 6 0.26
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (17 bp):
TTTTATATTTTTTATAA
Found at i:117998082 original size:28 final size:30
Alignment explanation
Indices: 117998051--117998129 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 30
117998041 ATAATTTCTA
*
117998051 TAAAAAATTTCTA-ATTTTTAA-TGAAATT
1 TAAAAAATTTCTATATTTTTAATTAAAATT
* *
117998079 T-AAATATTTTTATATTTTTAATTAAAATT
1 TAAAAAATTTCTATATTTTTAATTAAAATT
* * *
117998108 TAATAATTTTTTATAATTTTTA
1 TAAAAAATTTCTAT-ATTTTTA
117998130 TTGATATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
27 9 0.22
28 9 0.22
29 7 0.17
30 9 0.22
31 7 0.17
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (30 bp):
TAAAAAATTTCTATATTTTTAATTAAAATT
Found at i:117998141 original size:31 final size:31
Alignment explanation
Indices: 117998062--117998150 Score: 105
Period size: 31 Copynumber: 3.0 Consensus size: 31
117998052 AAAAAATTTC
* *
117998062 TAATTTTTAATGAAATTTAAAT-A-TTTTTA
1 TAATTTTTATTGAAATTTTAATAATTTTTTA
*
117998091 T-ATTTTTAATT-AAAATTTAATAATTTTTTA
1 TAATTTTT-ATTGAAATTTTAATAATTTTTTA
*
117998121 TAATTTTTATTGATATTTTAATAATTTTTT
1 TAATTTTTATTGAAATTTTAATAATTTTTT
117998151 TGCCACATGT
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
28 14 0.28
29 4 0.08
30 10 0.20
31 22 0.44
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (31 bp):
TAATTTTTATTGAAATTTTAATAATTTTTTA
Found at i:117999089 original size:69 final size:67
Alignment explanation
Indices: 117998969--117999100 Score: 167
Period size: 69 Copynumber: 1.9 Consensus size: 67
117998959 ATAAACAATA
* * *
117998969 TAATGGTTTTGCCTTTTAACTTAATAGGTAAACATTTGTCAAAACGACGTAGTTTTGCCTTTTAA
1 TAATGGTTTTGACTTTTAACTTAAAAGGTAAACATTTATCAAAACGACGTAGTTTTGCCTTTTAA
117999034 CT
66 CT
* * * *
117999036 TAATGG-TTTGACTTTTAACTTTAGGAAAGGTAAATATTTATCAGAATGGCGTAGTTTTGCCTTT
1 TAATGGTTTTGACTTTTAAC-TTA--AAAGGTAAACATTTATCAAAACGACGTAGTTTTGCCTTT
117999100 T
63 T
117999101 CTTATTCGGA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
66 12 0.22
67 9 0.16
69 34 0.62
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.42
Consensus pattern (67 bp):
TAATGGTTTTGACTTTTAACTTAAAAGGTAAACATTTATCAAAACGACGTAGTTTTGCCTTTTAA
CT
Found at i:118002077 original size:14 final size:15
Alignment explanation
Indices: 118002053--118002081 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
118002043 TTTGAGCATG
118002053 TTTTTGCTTCTTCAT
1 TTTTTGCTTCTTCAT
118002068 TTTTTG-TTCTTCAT
1 TTTTTGCTTCTTCAT
118002082 CCTGATGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.07, C:0.17, G:0.07, T:0.69
Consensus pattern (15 bp):
TTTTTGCTTCTTCAT
Found at i:118015470 original size:14 final size:14
Alignment explanation
Indices: 118015437--118015470 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
118015427 AAAAGTATAT
118015437 ATATATGTGTAATA
1 ATATATGTGTAATA
* *
118015451 AAATATGTGTACTA
1 ATATATGTGTAATA
118015465 ATATAT
1 ATATAT
118015471 AATAAAATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.12, T:0.41
Consensus pattern (14 bp):
ATATATGTGTAATA
Found at i:118015702 original size:21 final size:21
Alignment explanation
Indices: 118015665--118015722 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
118015655 ATATAAATAT
*
118015665 ATATAAATA-ATAGTATTAGAA
1 ATATACATATATA-TATTAGAA
*
118015686 ATATACCATATA-ATATTAGAT
1 ATATA-CATATATATATTAGAA
118015707 ATATACATATATATAT
1 ATATACATATATATAT
118015723 ATATAATAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 6 0.19
21 21 0.66
22 4 0.12
23 1 0.03
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (21 bp):
ATATACATATATATATTAGAA
Found at i:118015718 original size:8 final size:7
Alignment explanation
Indices: 118015693--118015793 Score: 61
Period size: 7 Copynumber: 14.3 Consensus size: 7
118015683 GAAATATACC
118015693 ATATAAT
1 ATATAAT
118015700 AT-TAGAT
1 ATATA-AT
118015707 ATATACAT
1 ATATA-AT
118015715 ATATATAT
1 ATATA-AT
118015723 ATATAAT
1 ATATAAT
118015730 AGTATGAA-
1 A-TAT-AAT
* *
118015738 AGA-AAA
1 ATATAAT
118015744 ATATAACT
1 ATATAA-T
118015752 A-ATAAT
1 ATATAAT
*
118015758 ATTAAAAT
1 A-TATAAT
118015766 ATATAAT
1 ATATAAT
118015773 A-AT-AT
1 ATATAAT
*
118015778 ATATAAA
1 ATATAAT
118015785 ATATAAT
1 ATATAAT
118015792 AT
1 AT
118015794 TAAGAACTTA
Statistics
Matches: 74, Mismatches: 9, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
5 5 0.07
6 10 0.14
7 31 0.42
8 26 0.35
9 2 0.03
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (7 bp):
ATATAAT
Found at i:118015764 original size:21 final size:21
Alignment explanation
Indices: 118015740--118015792 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 21
118015730 AGTATGAAAG
118015740 AAAAATATAACTAATAATAT-T
1 AAAAATATAA-TAATAATATAT
118015761 -AAAATAT-ATAATAATATAT
1 AAAAATATAATAATAATATAT
118015780 ATAAAATATAATA
1 A-AAAATATAATA
118015793 TTAAGAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
18 9 0.32
19 2 0.07
20 7 0.25
21 7 0.25
22 3 0.11
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (21 bp):
AAAAATATAATAATAATATAT
Found at i:118015776 original size:10 final size:10
Alignment explanation
Indices: 118015751--118015792 Score: 54
Period size: 9 Copynumber: 4.5 Consensus size: 10
118015741 AAAATATAAC
118015751 TAATAATAT-
1 TAATAATATA
118015760 TAA-AATATA
1 TAATAATATA
118015769 TAATAATATA
1 TAATAATATA
*
118015779 T-ATAAAATA
1 TAATAATATA
118015788 TAATA
1 TAATA
118015793 TTAAGAACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
8 5 0.17
9 14 0.48
10 10 0.34
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
TAATAATATA
Found at i:118016010 original size:13 final size:14
Alignment explanation
Indices: 118015992--118016022 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
118015982 ATGTATGAAT
118015992 ATATACATATA-TA
1 ATATACATATATTA
118016005 ATATACATATATTA
1 ATATACATATATTA
118016019 ATAT
1 ATAT
118016023 TAATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:118016612 original size:14 final size:14
Alignment explanation
Indices: 118016587--118016613 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
118016577 AAAGAGAGAG
118016587 AAAAGGAGAGGGGA
1 AAAAGGAGAGGGGA
118016601 AAAAGGAGAGGGG
1 AAAAGGAGAGGGG
118016614 GAGAGGGGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (14 bp):
AAAAGGAGAGGGGA
Found at i:118018246 original size:71 final size:70
Alignment explanation
Indices: 118018010--118018409 Score: 306
Period size: 71 Copynumber: 5.5 Consensus size: 70
118018000 AATTAAAAGA
* * * * * * *
118018010 CTCAACTCACCTCTCGTAATATGAATTGACTCTTT--AAGATAGAATTTGAAAATACCTTAGCGT
1 CTCAACTCA-CTCTCGCAATATGAGTTGA-TTTTTGAAACAT-GAA-TTGAAATTACCTCAACGT
* *
118018073 GCCGCAAGG
62 GCCCCGAGG
* * * *
118018082 CTCAACTCACCTCTCGCAATATGAGTCGATTTTAGATTTA-ATGGGAATTGAAATTACCTCAGCG
1 CTCAACTCA-CTCTCGCAATATGAGTTGATTTTTGA--AACAT--GAATTGAAATTACCTCAACG
*
118018146 TGCCCCAAGG
61 TGCCCCGAGG
* * *
118018156 TTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATGAATTGAAATTACCCCAACGTGTC
1 CTCAACTCAC-TCTCGCAATATGAGTTGATTTTTGAAACATGAATTGAAATTACCTCAACGTGCC
**
118018221 TTGAGG
65 CCGAGG
* * *
118018227 CTCAACTCATCTCTTGCAATATGAGCTGATTTTCATGAATTAAAAAGCA-GAAATTGAAAATACC
1 CTCAACTCA-CTCTCGCAATATGAGTTGATTTT--TG------AAA-CATG-AATTGAAATTACC
118018291 TC-ACGTGCCCCGAGG
55 TCAACGTGCCCCGAGG
* * *
118018306 TTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTC
1 CTCAACTCAC-TCTCGCAATATGAGTTGATTTTTGAAACATGAATTGAAATTACCTCAACGTGCC
**
118018371 TTGAGG
65 CCGAGG
*
118018377 CTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 CTCAACTCA-CTCTCGCAATATGAGTTGATTTT
118018410 CTTGGAAAAC
Statistics
Matches: 268, Mismatches: 38, Indels: 45
0.76 0.11 0.13
Matches are distributed among these distances:
70 16 0.06
71 97 0.36
72 29 0.11
73 5 0.02
74 57 0.21
75 4 0.01
77 2 0.01
78 1 0.00
79 42 0.16
80 15 0.06
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (70 bp):
CTCAACTCACTCTCGCAATATGAGTTGATTTTTGAAACATGAATTGAAATTACCTCAACGTGCCC
CGAGG
Found at i:118018334 original size:150 final size:154
Alignment explanation
Indices: 118018127--118018500 Score: 594
Period size: 150 Copynumber: 2.4 Consensus size: 154
118018117 ATTTAATGGG
* *
118018127 AATTGAAATTACCTCAGCGTGCCCCAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCCGAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
* * *
118018192 AACATGAATTGAAATTACCCCAACGTGTCTTGAGGCTCAACTCATCTCTTGCAATATGAGCTGA-
66 AACATAAATTGAAATTACCCCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
118018256 TT-TT-CATGAATTAAAAAGCAGA
131 TTCTTACATGAATTAAAAAGCAGA
118018278 AATTGAAAATACCTCA-CGTGCCCCGAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCCGAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
*
118018342 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCCCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-
118018407 TTTCTTGGAAAACATGAATTAAAAAGCAGA
130 TTTCTT-----ACATGAATTAAAAAGCAGA
* *
118018437 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AATTGAAAATACCTCAGCGTGCCCCGAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
118018501 GAAAAAACAA
Statistics
Matches: 205, Mismatches: 8, Indels: 11
0.92 0.04 0.05
Matches are distributed among these distances:
150 107 0.52
151 15 0.07
152 2 0.01
153 2 0.01
159 34 0.17
160 45 0.22
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.30
Consensus pattern (154 bp):
AATTGAAAATACCTCAGCGTGCCCCGAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
AACATAAATTGAAATTACCCCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TTCTTACATGAATTAAAAAGCAGA
Found at i:118030840 original size:14 final size:14
Alignment explanation
Indices: 118030807--118030840 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
118030797 TAAAGTATAT
118030807 ATATATGTGTAATA
1 ATATATGTGTAATA
* *
118030821 AAATATGTGTACTA
1 ATATATGTGTAATA
118030835 ATATAT
1 ATATAT
118030841 AATAAAATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.12, T:0.41
Consensus pattern (14 bp):
ATATATGTGTAATA
Found at i:118031064 original size:21 final size:21
Alignment explanation
Indices: 118031027--118031084 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
118031017 ACATAAATAT
*
118031027 ATATAAATA-ATAGTATTAGAA
1 ATATACATATATA-TATTAGAA
*
118031048 ATATACCATATA-ATATTAGAT
1 ATATA-CATATATATATTAGAA
118031069 ATATACATATATATAT
1 ATATACATATATATAT
118031085 ATATATAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 6 0.19
21 21 0.66
22 4 0.12
23 1 0.03
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (21 bp):
ATATACATATATATATTAGAA
Found at i:118031148 original size:20 final size:20
Alignment explanation
Indices: 118031075--118031151 Score: 59
Period size: 20 Copynumber: 3.8 Consensus size: 20
118031065 AGATATATAC
*
118031075 ATATATATATATATATAATA
1 ATATATATAAATATATAATA
* * *
118031095 GTATGAAAGAAA-ATAACTAATA
1 ATAT-ATATAAATAT-A-TAATA
*
118031117 ATAT-TAAAAAATATATAATA
1 ATATAT-ATAAATATATAATA
118031137 ATATATATAAATATA
1 ATATATATAAATATA
118031152 ATATTAAGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 12
0.68 0.13 0.19
Matches are distributed among these distances:
20 22 0.51
21 11 0.26
22 10 0.23
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (20 bp):
ATATATATAAATATATAATA
Found at i:118033346 original size:75 final size:75
Alignment explanation
Indices: 118033227--118033398 Score: 205
Period size: 75 Copynumber: 2.4 Consensus size: 75
118033217 CATGGCAAAG
** *
118033227 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
118033286 CCATACTGAGC
65 CCATACCGAGC
118033297 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
118033362 CATACCGAGT
66 CATACCGAGC
***
118033372 TAAAAAAATGTAGGTATGGTATT-TCAA
1 T-GTGAAATGTAGGTATGGTATTATCAA
118033399 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 1 0.01
75 46 0.53
76 18 0.21
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:118033365 original size:35 final size:35
Alignment explanation
Indices: 118033230--118033396 Score: 167
Period size: 35 Copynumber: 4.6 Consensus size: 35
118033220 GGCAAAGTGT
* **
118033230 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
118033265 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
118033300 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
118033340 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTT-AA
*
118033376 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
118033397 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
35 64 0.55
36 21 0.18
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:118033388 original size:36 final size:35
Alignment explanation
Indices: 118033326--118033396 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 35
118033316 ATTATCAAAT
* *
118033326 CCATACTGAGTTAAGAAATGTAGGTATGGCATTTC
1 CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
*
118033361 CCATACCGAGTTAAAAAAATGTAGGTATGGTATTTC
1 CCATACCGAGTT-AAAAAATGTAGGTATGGCATTTC
118033397 AATGAGGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 11 0.34
36 21 0.66
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (35 bp):
CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
Found at i:118035036 original size:86 final size:86
Alignment explanation
Indices: 118034852--118035269 Score: 576
Period size: 85 Copynumber: 4.9 Consensus size: 86
118034842 TAATTTCCAG
* * * * * * *
118034852 CCTGTTACCCTACTGTTTAGGGGATTCAGGCTT-GTCATCTTTGATCTGTTTCC-CTACTGCTTA
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGG-TTCTTCGTCTTCGATCTG-CTCCACTACTGCTTA
** * *
118034915 GGG-TTTTAGATCTGTAATTCAA
64 GGGAGATAAGATCTGCAATTCAA
118034937 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
118035002 GAGATAAGATCTGCAATTCAA
66 GAGATAAGATCTGCAATTCAA
*
118035023 CTTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGC-CCACTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
118035087 GAGATAAGATCTGCAATTCAA
66 GAGATAAGATCTGCAATTCAA
118035108 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
*
118035173 GAGATAAGATCTGCAGTTCAA
66 GAGATAAGATCTGCAATTCAA
* * * * * *
118035194 CCCGTTACCCTACTGCTTAGGGGTTTATGGTCTCGTCATCTTCAATCTGTTTCC-CTACTGCTTA
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGT-TCTTCGTCTTCGATCTG-CTCCACTACTGCTTA
* *
118035258 GGGGGTTAAGAT
64 GGGAGATAAGAT
118035270 TGTAAATTTT
Statistics
Matches: 305, Mismatches: 22, Indels: 10
0.91 0.07 0.03
Matches are distributed among these distances:
84 5 0.02
85 136 0.45
86 127 0.42
87 34 0.11
88 3 0.01
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (86 bp):
CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
GAGATAAGATCTGCAATTCAA
Found at i:118035139 original size:171 final size:171
Alignment explanation
Indices: 118034855--118035269 Score: 593
Period size: 171 Copynumber: 2.4 Consensus size: 171
118034845 TTTCCAGCCT
* * * * ** * *
118034855 GTTACCCTACTGTTTAGGGGATTCAGG-CTTGTCATCTTTGATCTGTTTCCCTACTGCTTAGGGT
1 GTTACCCTACTGCTTAGGGGTTTAAGGTCTCGTCATCTTCAATCTG-TCCCCTACTGCTTAGGGG
* *
118034919 TTTAGATCTGTAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCT
65 TTAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCT
**
118034984 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCAACTT
130 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCAACCC
* * *
118035026 GTTACCCTACTGCTTAGGGGTTTAAGGT-TCTTCGTCTTCGATCTG-CCCACTACTGCTTAGGGA
1 GTTACCCTACTGCTTAGGGGTTTAAGGTCTCGTCATCTTCAATCTGTCCC-CTACTGCTTAGGG-
*
118035089 GATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATC
64 GTTAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATC
*
118035154 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAGTTCAACCC
129 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCAACCC
* *
118035197 GTTACCCTACTGCTTAGGGGTTTATGGTCTCGTCATCTTCAATCTGTTTCCCTACTGCTTAGGGG
1 GTTACCCTACTGCTTAGGGGTTTAAGGTCTCGTCATCTTCAATCTG-TCCCCTACTGCTTA-GGG
118035262 GTTAAGAT
64 GTTAAGAT
118035270 TGTAAATTTT
Statistics
Matches: 216, Mismatches: 21, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
169 2 0.01
170 13 0.06
171 165 0.76
172 14 0.06
173 17 0.08
174 5 0.02
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (171 bp):
GTTACCCTACTGCTTAGGGGTTTAAGGTCTCGTCATCTTCAATCTGTCCCCTACTGCTTAGGGGT
TAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTG
CTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCAACCC
Found at i:118050124 original size:9 final size:9
Alignment explanation
Indices: 118050112--118050146 Score: 61
Period size: 9 Copynumber: 3.8 Consensus size: 9
118050102 TTTAAATTGA
118050112 ATAAATTTT
1 ATAAATTTT
118050121 ATAAATTTT
1 ATAAATTTT
118050130 ATAAATTTT
1 ATAAATTTT
118050139 ATCAAATT
1 AT-AAATT
118050147 AAAATATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 20 0.80
10 5 0.20
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (9 bp):
ATAAATTTT
Found at i:118050125 original size:18 final size:18
Alignment explanation
Indices: 118050099--118050146 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
118050089 AAATATAACT
*
118050099 TTTTTTAAATTGAATAAA
1 TTTTATAAATTGAATAAA
**
118050117 TTTTATAAATTTTATAAA
1 TTTTATAAATTGAATAAA
118050135 TTTTATCAAATT
1 TTTTAT-AAATT
118050147 AAAATATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 21 0.81
19 5 0.19
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (18 bp):
TTTTATAAATTGAATAAA
Found at i:118050354 original size:15 final size:15
Alignment explanation
Indices: 118050334--118050363 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
118050324 TTTTTTTTTA
*
118050334 ATTTTTAATATTAAT
1 ATTTTTAACATTAAT
118050349 ATTTTTAACATTAAT
1 ATTTTTAACATTAAT
118050364 TTTAGTATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (15 bp):
ATTTTTAACATTAAT
Found at i:118051870 original size:24 final size:24
Alignment explanation
Indices: 118051843--118051894 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
118051833 TTTCTAAAAG
118051843 ATTTAGTATTTATT-ACTATAATAT
1 ATTTAGTATTTATTAAC-ATAATAT
*
118051867 ATTTAGTATTTATTAACATAATTT
1 ATTTAGTATTTATTAACATAATAT
118051891 ATTT
1 ATTT
118051895 GACCTACTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 24 0.92
25 2 0.08
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (24 bp):
ATTTAGTATTTATTAACATAATAT
Found at i:118058247 original size:69 final size:69
Alignment explanation
Indices: 118058132--118058287 Score: 278
Period size: 69 Copynumber: 2.3 Consensus size: 69
118058122 CTGCAACCAG
* *
118058132 AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTTTATGAAGAAGAAGCAAGCAATAA
1 AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTGTATGAAGAAAAAGCAAGCAATAA
118058197 TTAA
66 TTAA
118058201 AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTGTATGAAGAAAAAGCAAGCAATAA
1 AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTGTATGAAGAAAAAGCAAGCAATAA
118058266 TTAA
66 TTAA
118058270 AATTCAGAG-CAATTTCCG
1 AATTCAGAGTC-ATTTCCG
118058288 ACTGCAAAAA
Statistics
Matches: 84, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
68 1 0.01
69 83 0.99
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (69 bp):
AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTGTATGAAGAAAAAGCAAGCAATAA
TTAA
Found at i:118065765 original size:25 final size:25
Alignment explanation
Indices: 118065736--118065791 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
118065726 CATCTCCTTG
118065736 TCATATCTTTGCACACTGCATATGC
1 TCATATCTTTGCACACTGCATATGC
118065761 TCATATCTTTGCACACTGCATATGC
1 TCATATCTTTGCACACTGCATATGC
118065786 TCATAT
1 TCATAT
118065792 ATATATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.25, C:0.27, G:0.11, T:0.38
Consensus pattern (25 bp):
TCATATCTTTGCACACTGCATATGC
Found at i:118065795 original size:2 final size:2
Alignment explanation
Indices: 118065788--118065825 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
118065778 GCATATGCTC
118065788 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
118065826 CACCTAATGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:118068085 original size:13 final size:13
Alignment explanation
Indices: 118068059--118068092 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
118068049 TAGTAAAAAT
*
118068059 TTAATTATATTAA
1 TTAATTATACTAA
*
118068072 TTATTTATACTAA
1 TTAATTATACTAA
118068085 TTAATTAT
1 TTAATTAT
118068093 TTGATAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (13 bp):
TTAATTATACTAA
Found at i:118069028 original size:6 final size:6
Alignment explanation
Indices: 118069017--118069053 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
118069007 CCGAAATTTT
118069017 AAAA-A AAAA-A AAAACA AAAACA AAAACA AAAACA AAA
1 AAAACA AAAACA AAAACA AAAACA AAAACA AAAACA AAA
118069054 GTTATATCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 9 0.29
6 22 0.71
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAACA
Found at i:118073037 original size:8 final size:8
Alignment explanation
Indices: 118073002--118073060 Score: 52
Period size: 9 Copynumber: 7.2 Consensus size: 8
118072992 GAAATCTAAT
118073002 AAATTATTA
1 AAATTA-TA
118073011 AAATTAT-
1 AAATTATA
*
118073018 ATATTAATA
1 AAATT-ATA
118073027 AAATTATA
1 AAATTATA
118073035 AAA-TATTA
1 AAATTA-TA
118073043 AAATATATA
1 AAAT-TATA
118073052 AAATT-TA
1 AAATTATA
118073059 AA
1 AA
118073061 TTTTATTTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
7 10 0.23
8 15 0.35
9 16 0.37
10 2 0.05
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
AAATTATA
Found at i:118073061 original size:15 final size:16
Alignment explanation
Indices: 118073000--118073060 Score: 70
Period size: 16 Copynumber: 3.8 Consensus size: 16
118072990 AAGAAATCTA
*
118073000 ATAAATTATTAAAATT
1 ATAAAATATTAAAATT
* * *
118073016 ATATATTAATAAAATT
1 ATAAAATATTAAAATT
118073032 ATAAAATATTAAAATAT
1 ATAAAATATTAAAAT-T
118073049 ATAAAAT-TTAAA
1 ATAAAATATTAAA
118073061 TTTTATTTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
16 31 0.79
17 8 0.21
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATAAAATATTAAAATT
Found at i:118073762 original size:18 final size:18
Alignment explanation
Indices: 118073741--118073775 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
118073731 TTTACTAGAA
*
118073741 TTTTTATATTTTTATAAC
1 TTTTTATATTTCTATAAC
*
118073759 TTTTTATGTTTCTATAA
1 TTTTTATATTTCTATAA
118073776 AACTTTAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.06, G:0.03, T:0.66
Consensus pattern (18 bp):
TTTTTATATTTCTATAAC
Found at i:118073830 original size:18 final size:17
Alignment explanation
Indices: 118073807--118073843 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
118073797 AATTTTATAA
*
118073807 TTTATTATAGTTTATTTT
1 TTTATTATAATTT-TTTT
118073825 TTTATTATAATTTTTTT
1 TTTATTATAATTTTTTT
118073842 TT
1 TT
118073844 AACATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTATTATAATTTTTTT
Found at i:118075746 original size:29 final size:30
Alignment explanation
Indices: 118075699--118075766 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
118075689 TGGCCCAAGA
* *
118075699 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
118075729 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
118075759 GCAAATAT
1 GTAAATAT
118075767 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:118076277 original size:20 final size:20
Alignment explanation
Indices: 118076240--118076277 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
118076230 TGATGGGGAG
*
118076240 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
118076260 CAAGAAATAT-AAGCTGGA
1 CAAG-AATATCAAGCTGGA
118076278 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.24
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:118078224 original size:46 final size:46
Alignment explanation
Indices: 118078167--118078439 Score: 442
Period size: 46 Copynumber: 6.0 Consensus size: 46
118078157 AGTGTGCTCT
* *
118078167 CTGAAATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
118078213 CTGATATGAAATGTGTAAGACCATGGTTG-AAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
118078258 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
118078304 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
118078350 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
118078396 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
118078440 TCATGTCAAA
Statistics
Matches: 215, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
45 45 0.21
46 170 0.79
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:118078460 original size:137 final size:136
Alignment explanation
Indices: 118078182--118078462 Score: 397
Period size: 137 Copynumber: 2.1 Consensus size: 136
118078172 ATGAAATGTG
*
118078182 TAAGACCATGGTTGAAAGATACCATGGCAGCCTGATATGAAATGTGTAAGACCATGGTTGAAGAT
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAGAT
* * * * *
118078247 ACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACCTGATATG
66 ACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGATA-G
***
118078312 AAATGTG
130 AAATAAA
118078319 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTG-AAGA
* *
118078384 TACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG-TC
65 TACCATGGCAACATGACATG-AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGAT-
118078447 A-AAGATAAA
128 AGAA-ATAAA
118078456 TAAGACC
1 TAAGACC
118078463 GTGGATGGGA
Statistics
Matches: 129, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
136 2 0.02
137 70 0.54
138 57 0.44
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (136 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAGAT
ACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGATAGA
AATAAA
Found at i:118082840 original size:20 final size:21
Alignment explanation
Indices: 118082815--118082861 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
118082805 TTTTCTTAAA
118082815 TAAAAAA-TACCATAAAATTC
1 TAAAAAACTACCATAAAATTC
** *
118082835 TAAAAAACTTTCATAATATTC
1 TAAAAAACTACCATAAAATTC
118082856 TAAAAA
1 TAAAAA
118082862 TTTTAAAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (21 bp):
TAAAAAACTACCATAAAATTC
Found at i:118089148 original size:2 final size:2
Alignment explanation
Indices: 118089141--118089173 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
118089131 TGATCGTAAA
118089141 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
118089174 AGTTCGAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:118089533 original size:13 final size:14
Alignment explanation
Indices: 118089510--118089544 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
118089500 AATCTTGATC
*
118089510 TTTTATATATTTTA
1 TTTTATTTATTTTA
118089524 -TTTATTTATTTTA
1 TTTTATTTATTTTA
118089537 TTTTATTT
1 TTTTATTT
118089545 TTCAATTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTATTTATTTTA
Found at i:118095186 original size:43 final size:43
Alignment explanation
Indices: 118095135--118095281 Score: 183
Period size: 43 Copynumber: 3.4 Consensus size: 43
118095125 TATCCCTAAT
*
118095135 ATGGTCTTACATGTAATC-ACATAACGATGCCACTGTCCCAAAC
1 ATGGTCTTACATGTAATCTA-ATAACGATGCCAATGTCCCAAAC
* * * *
118095178 A-GAGTCTTACACGAAATCGATTAACGATGCCAATGTCCCAAAC
1 ATG-GTCTTACATGTAATCTAATAACGATGCCAATGTCCCAAAC
* *
118095221 ATGGTCTTACATGTAATCTTAAT-ACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATC-TAATAACGATGCCAATGTCCCAAAC
118095264 ATGGTCTTACATGTAATC
1 ATGGTCTTACATGTAATC
118095282 ACATATCGAT
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
42 1 0.01
43 85 0.94
44 4 0.04
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCTAATAACGATGCCAATGTCCCAAAC
Found at i:118099250 original size:25 final size:25
Alignment explanation
Indices: 118099222--118099271 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
118099212 AAAATAATAA
*
118099222 ATTTTTTTTTCAAAATTTAAACTTT
1 ATTTATTTTTCAAAATTTAAACTTT
118099247 ATTTATTTTTCAAAATTTAAACTTT
1 ATTTATTTTTCAAAATTTAAACTTT
118099272 CTCCTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (25 bp):
ATTTATTTTTCAAAATTTAAACTTT
Found at i:118099280 original size:25 final size:24
Alignment explanation
Indices: 118099226--118099286 Score: 77
Period size: 25 Copynumber: 2.5 Consensus size: 24
118099216 TAATAAATTT
*
118099226 TTTTTTCAAAATTTAAACTTTATT
1 TTTTTTCAAAATTTAAACTTTATC
*
118099250 TATTTTTCAAAATTTAAACTTTCTCC
1 T-TTTTTCAAAATTTAAACTTTAT-C
*
118099276 TTTTTTTAAAA
1 TTTTTTCAAAA
118099287 AACACTATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.03
25 30 0.94
26 1 0.03
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (24 bp):
TTTTTTCAAAATTTAAACTTTATC
Found at i:118099379 original size:174 final size:172
Alignment explanation
Indices: 118099076--118099387 Score: 430
Period size: 174 Copynumber: 1.8 Consensus size: 172
118099066 AAAACATATT
*
118099076 TTTATTTTTCAAAATCTAAACTTTCTCCTTTAAAAAAATACACTATTTTTATTAAAGATTAAATG
1 TTTATTTTTCAAAATCTAAACTTTCTCCTTTAAAAAAATACACTATTTTTATTAAAAATTAAATG
* * * * *
118099141 TTTTATTTTGAAGTAGTTAAAAAAAATCAAAACTCTGTTTTAAAAATTTAAAAATTCTTTTAAAA
66 TTTTACTTTGAAATAGTTAAAAAAAATCAAAAATCTATTTTAAAAATTTAAAAATTCCTTTAAAA
*
118099206 TAACTAAAAATAATAAATTTTTTTTTCAAAATTTAAACTTTA
131 TAAATAAAAATAATAAATTTTTTTTTCAAAATTTAAACTTTA
* ** *
118099248 TTTATTTTTCAAAATTTAAACTTTCTCCTTTTTTTAAAAA-ACACTATTTTTCTTAAAAATTAAA
1 TTTATTTTTCAAAATCTAAACTTTCTCC--TTTAAAAAAATACACTATTTTTATTAAAAATTAAA
* * ***
118099312 -GCTTTTACTTTGAAATGGTTGAAAAAAAATCAAAAATTTATTTTAAAAATTTAATCTTTCCTTT
64 TG-TTTTACTTTGAAATAGTT-AAAAAAAATCAAAAATCTATTTTAAAAATTTAAAAATTCCTTT
118099376 AAAATAAATAAA
127 AAAATAAATAAA
118099388 TAAAAAACAT
Statistics
Matches: 120, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
172 28 0.23
173 37 0.31
174 55 0.46
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.44
Consensus pattern (172 bp):
TTTATTTTTCAAAATCTAAACTTTCTCCTTTAAAAAAATACACTATTTTTATTAAAAATTAAATG
TTTTACTTTGAAATAGTTAAAAAAAATCAAAAATCTATTTTAAAAATTTAAAAATTCCTTTAAAA
TAAATAAAAATAATAAATTTTTTTTTCAAAATTTAAACTTTA
Found at i:118103687 original size:17 final size:17
Alignment explanation
Indices: 118103665--118103698 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
118103655 TCACCTTATG
118103665 GTCTTACCATGCACAAA
1 GTCTTACCATGCACAAA
118103682 GTCTTACCATGCACAAA
1 GTCTTACCATGCACAAA
118103699 CAATCCATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.24
Consensus pattern (17 bp):
GTCTTACCATGCACAAA
Found at i:118108453 original size:13 final size:13
Alignment explanation
Indices: 118108435--118108469 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
118108425 TCTTTCCTCT
118108435 AAAAAAAAAAAAG
1 AAAAAAAAAAAAG
*
118108448 AAAAAAGAAAAAG
1 AAAAAAAAAAAAG
118108461 AAGAAAAAA
1 AA-AAAAAA
118108470 TTGTAAGGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAG
Found at i:118108464 original size:16 final size:14
Alignment explanation
Indices: 118108435--118108469 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 14
118108425 TCTTTCCTCT
118108435 AAAAAAAAAAAAGA
1 AAAAAAAAAAAAGA
118108449 AAAAAGAAAAAGAAGA
1 AAAAA-AAAAA-AAGA
118108465 AAAAA
1 AAAAA
118108470 TTGTAAGGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 5 0.26
16 9 0.47
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAGA
Found at i:118109085 original size:51 final size:51
Alignment explanation
Indices: 118109026--118109128 Score: 179
Period size: 51 Copynumber: 2.0 Consensus size: 51
118109016 AAAAGTTTGT
* * *
118109026 TTACGCAGTTCAATTTCTTTACATTTGTGGAGTCTAGTTCAGTTAGAAGTA
1 TTACGCAGTTCAATTTCTTTACATTTGTGGAGTCTAGCTCAATGAGAAGTA
118109077 TTACGCAGTTCAATTTCTTTACATTTGTGGAGTCTAGCTCAATGAGAAGTA
1 TTACGCAGTTCAATTTCTTTACATTTGTGGAGTCTAGCTCAATGAGAAGTA
118109128 T
1 T
118109129 CAACTATCTT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (51 bp):
TTACGCAGTTCAATTTCTTTACATTTGTGGAGTCTAGCTCAATGAGAAGTA
Found at i:118109685 original size:20 final size:20
Alignment explanation
Indices: 118109660--118109699 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
118109650 AGTGGACACT
118109660 CCCTTGGCACTCAATTACTA
1 CCCTTGGCACTCAATTACTA
118109680 CCCTTGGCACTCAATTACTA
1 CCCTTGGCACTCAATTACTA
118109700 GTTCTATGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.35, G:0.10, T:0.30
Consensus pattern (20 bp):
CCCTTGGCACTCAATTACTA
Found at i:118111095 original size:140 final size:140
Alignment explanation
Indices: 118110666--118111095 Score: 637
Period size: 140 Copynumber: 3.1 Consensus size: 140
118110656 ATGCCTACTG
* ** * *
118110666 CGACACTTTTGGGGCGACACTTTTTTAAGTGTTGGGATAGACTTGTCGACCTACGCTTTGGCCAA
1 CGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCCAA
118110731 CTCTTTGTATAAGAGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC
66 CTCTTTGTATAAGAGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC
118110796 AACACTATGC
131 AACACTATGC
** * * * *
118110806 CGACACTTTCAGGCTGACACTTTCCTATGTGTTGGGATAGACTCGCCGACATACACTTTGGCCAA
1 CGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCCAA
*
118110871 CTCTTTATATAAGAGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC
66 CTCTTTGTATAAGAGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC
118110936 AACACTATGC
131 AACACTATGC
* * * **
118110946 CAACACTTTTGGGCCGATACTTTCCTAAGTGTTGGGATAGACTTGTTGTTATACACTTTGGCCAA
1 CGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCCAA
* * * *
118111011 CCCTTTGTATAAGAGTTGGGATATGCAT-CCTTAAGACAACACTTAAATAAGAGTCGGCTTTGTT
66 CTCTTTGTATAAGAGTTGGGATATGCATGCC-TAAGGCAACGCTTAAATAAGAGTCGGCTTTGTC
* *
118111075 CAACAGTATGT
130 CAACACTATGC
118111086 CGACACTTTT
1 CGACACTTTT
118111096 CTAAGTGATG
Statistics
Matches: 258, Mismatches: 31, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
139 2 0.01
140 256 0.99
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (140 bp):
CGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGTCGACATACACTTTGGCCAA
CTCTTTGTATAAGAGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC
AACACTATGC
Found at i:118111189 original size:126 final size:126
Alignment explanation
Indices: 118110958--118111221 Score: 359
Period size: 126 Copynumber: 2.1 Consensus size: 126
118110948 ACACTTTTGG
* * * * **
118110958 GCCGATACTTTCCTAAGTGTTGGGATAGACTTGTTGTTATACACTTTGGCCAACCCTTTGTATAA
1 GCCGACACTTTTCTAAGTGATGGGATAGACTTGTCGGCATACACTTTGGCCAACCCTTTGTATAA
* * * *
118111023 GAGTTGGGATATGCATCCTTAAGACAACACTTAAATAAGAGTCGGCTTTGTTCAACAGTAT
66 GAGTAGCGATATGCATCCTTAAGACAACACTTAAATAAGAGTCGGCTTTGTCCAACACTAT
* * * * *
118111084 GTCGACACTTTTCTAAGTGATGGGGTAGACTTGTCGGCATACATTTTGGCTAACTCTTTGTATAA
1 GCCGACACTTTTCTAAGTGATGGGATAGACTTGTCGGCATACACTTTGGCCAACCCTTTGTATAA
* *
118111149 GAGTAGCTATATGCATGCC-TAAGGCAACACTTAAATAAGAGTCGGCTTTGTCCAACACTAT
66 GAGTAGCGATATGCAT-CCTTAAGACAACACTTAAATAAGAGTCGGCTTTGTCCAACACTAT
118111210 GCCGACACTTTT
1 GCCGACACTTTT
118111222 GGGCCAACAC
Statistics
Matches: 119, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
126 117 0.98
127 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (126 bp):
GCCGACACTTTTCTAAGTGATGGGATAGACTTGTCGGCATACACTTTGGCCAACCCTTTGTATAA
GAGTAGCGATATGCATCCTTAAGACAACACTTAAATAAGAGTCGGCTTTGTCCAACACTAT
Found at i:118111300 original size:266 final size:266
Alignment explanation
Indices: 118110821--118111339 Score: 707
Period size: 266 Copynumber: 2.0 Consensus size: 266
118110811 CTTTCAGGCT
* *
118110821 GACACTTTCCTATGTGTTGGGATAGACTCGCCGACATACACTTTGGCCAACTCTTTATATAAGAG
1 GACACTTTCCTAAGTGATGGGATAGACTCGCCGACATACACTTTGGCCAACTCTTTATATAAGAG
* * *
118110886 TTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCAACACTATGCCAACA
66 TAGCGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGGCTTTGTCCAACACTATGCCAACA
* * *****
118110951 CTTTTGGGCCGATACTTTCCTAAGTGTTGGGATAGACTTGTTGTTATACACTTTGGCCAACCCTT
131 CTTTTGGGCCAACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACACTTTGGCCAACCCTT
* * *
118111016 TGTATAAGAGTTGGGATATGCAT-CCTTAAGACAACACTTAAATAAGAGTCGGCTTTGTTCAACA
196 TGGACAAGAGTCGGGATATGCATGCC-TAAGACAACACTTAAATAAGAGTCGGCTTTGTTCAACA
118111080 GTATGTC
260 GTATGTC
* * * * * * * *
118111087 GACACTTTTCTAAGTGATGGGGTAGACTTGTCGGCATACATTTTGGCTAACTCTTTGTATAAGAG
1 GACACTTTCCTAAGTGATGGGATAGACTCGCCGACATACACTTTGGCCAACTCTTTATATAAGAG
* *
118111152 TAGCTATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGGCTTTGTCCAACACTATGCCGACA
66 TAGCGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGGCTTTGTCCAACACTATGCCAACA
* ** *
118111217 CTTTTGGGCCAACACTTTCTTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTT
131 CTTTTGGGCCAACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACACTTTGGCCAACCCTT
* * * * * *
118111282 TGGACGAGGGTCGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTTGGTTTTGT
196 TGGACAAGAGTCGGGATATGCATGCCTAAGACAACACTTAAATAAGAGTCGGCTTTGT
118111340 CCAATACTAT
Statistics
Matches: 217, Mismatches: 35, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
266 215 0.99
267 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (266 bp):
GACACTTTCCTAAGTGATGGGATAGACTCGCCGACATACACTTTGGCCAACTCTTTATATAAGAG
TAGCGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGGCTTTGTCCAACACTATGCCAACA
CTTTTGGGCCAACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACACTTTGGCCAACCCTT
TGGACAAGAGTCGGGATATGCATGCCTAAGACAACACTTAAATAAGAGTCGGCTTTGTTCAACAG
TATGTC
Found at i:118112726 original size:21 final size:21
Alignment explanation
Indices: 118112665--118112727 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
118112655 TAGATGTTAA
* *
118112665 TGTTT-GAGTTTTGAGTTTTAG
1 TGTTTAGAGTTTAGGGTTTT-G
*
118112686 TTTTTAGAGTTTAGGGTTTTG
1 TGTTTAGAGTTTAGGGTTTTG
118112707 TGTTTAG-GTTTAGGGATTTTG
1 TGTTTAGAGTTTAGGG-TTTTG
118112728 ATAAAAATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
20 8 0.22
21 16 0.44
22 12 0.33
ACGTcount: A:0.14, C:0.00, G:0.30, T:0.56
Consensus pattern (21 bp):
TGTTTAGAGTTTAGGGTTTTG
Found at i:118113575 original size:3 final size:3
Alignment explanation
Indices: 118113561--118113595 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
118113551 TGTGCATGGG
*
118113561 GAT GAA GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
118113596 AGAAGAAGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.37, C:0.00, G:0.34, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:118113603 original size:6 final size:6
Alignment explanation
Indices: 118113594--118113639 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
118113584 TGATGATGAT
* * * *
118113594 GAAGAA GAAGAC GAAGAA GAAGAC GAAGAC GAAGAT GAAGAT GAAG
1 GAAGAC GAAGAC GAAGAC GAAGAC GAAGAC GAAGAC GAAGAC GAAG
118113640 CCAACGCCGA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.54, C:0.07, G:0.35, T:0.04
Consensus pattern (6 bp):
GAAGAC
Found at i:118113609 original size:12 final size:12
Alignment explanation
Indices: 118113594--118113639 Score: 65
Period size: 12 Copynumber: 3.8 Consensus size: 12
118113584 TGATGATGAT
118113594 GAAGAAGAAGAC
1 GAAGAAGAAGAC
118113606 GAAGAAGAAGAC
1 GAAGAAGAAGAC
* *
118113618 GAAGACGAAGAT
1 GAAGAAGAAGAC
*
118113630 GAAGATGAAG
1 GAAGAAGAAG
118113640 CCAACGCCGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.54, C:0.07, G:0.35, T:0.04
Consensus pattern (12 bp):
GAAGAAGAAGAC
Found at i:118113621 original size:18 final size:18
Alignment explanation
Indices: 118113594--118113639 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
118113584 TGATGATGAT
118113594 GAAGAAGAAGACGAAGAA
1 GAAGAAGAAGACGAAGAA
* *
118113612 GAAGACGAAGACGAAGAT
1 GAAGAAGAAGACGAAGAA
*
118113630 GAAGATGAAG
1 GAAGAAGAAG
118113640 CCAACGCCGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.54, C:0.07, G:0.35, T:0.04
Consensus pattern (18 bp):
GAAGAAGAAGACGAAGAA
Found at i:118116125 original size:35 final size:35
Alignment explanation
Indices: 118116070--118116502 Score: 225
Period size: 35 Copynumber: 12.0 Consensus size: 35
118116060 AAATAAATGC
* *
118116070 CTTAGACGTGTTTATTCCAACCTTTTTAAGATTGT
1 CTTAGACGGGTTTATTCCAACCTTTTTAAGGTTGT
* *
118116105 CTTAAACGGGTTTATTCCAACCTTTTAAAGGTTG-
1 CTTAGACGGGTTTATTCCAACCTTTTTAAGGTTGT
* * *
118116139 CTTTAGATGCGTCTA-TCCTAACCTTTTTAAAGGTTGT
1 C-TTAGACGGGTTTATTCC-AACCTTTTT-AAGGTTGT
* * ** * * *
118116176 TTTAAATAAGGTATATCCCAACTTTTTTAAGGTTGT
1 CTTAGA-CGGGTTTATTCCAACCTTTTTAAGGTTGT
* * *
118116212 ATTAGACGGCTTTA-TCTCAACCTTTTTAAAGG-TAT
1 CTTAGACGGGTTTATTC-CAACCTTTTT-AAGGTTGT
* * *
118116247 CTTTAGACAAGGTTTA-TCCTAGCCTTTTTAGGGTTG-
1 C-TTAGAC-GGGTTTATTCC-AACCTTTTTAAGGTTGT
* * * * *
118116283 CTTTAAATGAGTCTA-TCCTAACCTTTTTTAAGGGTTGC
1 C-TTAGACGGGTTTATTCC-AACC-TTTTTAA-GGTTGT
* * *
118116321 CTTAGACAAGGTCTA-TCTCAACCTTTTTAAGATTGT
1 CTTAGAC-GGGTTTATTC-CAACCTTTTTAAGGTTGT
* * * * *
118116357 CTTAAACGAGTTTATCCCAGCCTTTTTTAAGAGTTGC
1 CTTAGACGGGTTTATTCCAACC-TTTTTAAG-GTTGT
* * *
118116394 CTTAGACAAGGTTTATCCCAACCTTTTTTAAGGGTTGC
1 CTTAGAC-GGGTTTATTCCAACC-TTTTTAA-GGTTGT
* * * *
118116432 CTTAGACTGGTCTATTTCAACCTTTTTAAGGCTGT
1 CTTAGACGGGTTTATTCCAACCTTTTTAAGGTTGT
* **
118116467 CTTAGACGGGTCTACCCCAACCTTTTTCAAAGGTTG
1 CTTAGACGGGTTTATTCCAACCTTTTT--AAGGTTG
118116503 GCCTTGACTA
Statistics
Matches: 306, Mismatches: 68, Indels: 46
0.73 0.16 0.11
Matches are distributed among these distances:
34 5 0.02
35 108 0.35
36 75 0.25
37 70 0.23
38 46 0.15
39 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (35 bp):
CTTAGACGGGTTTATTCCAACCTTTTTAAGGTTGT
Found at i:118116170 original size:36 final size:35
Alignment explanation
Indices: 118116123--118116502 Score: 154
Period size: 36 Copynumber: 10.5 Consensus size: 35
118116113 GGTTTATTCC
118116123 AACC-TTTTAAAGGTTGCTTTAGATGCGTCTATCCT
1 AACCTTTTTAAAGGTTGCTTTAGATG-GTCTATCCT
* * * *
118116158 AACCTTTTTAAAGGTTGTTTTAAATAAGGTATATCCC
1 AACCTTTTTAAAGGTTGCTTTAGAT--GGTCTATCCT
* * *
118116195 AA-CTTTTTTAAGGTTG-TATTAGACGGCTTTAT-CT
1 AACCTTTTTAAAGGTTGCT-TTAGATGG-TCTATCCT
* *
118116229 CAACCTTTTTAAAGGTAT-CTTTAGACAAGGTTTATCCT
1 -AACCTTTTTAAAGGT-TGCTTTAG--ATGGTCTATCCT
* * *
118116267 AGCCTTTTT-AGGGTTGCTTTAAATGAGTCTATCCT
1 AACCTTTTTAAAGGTTGCTTTAGATG-GTCTATCCT
* * *
118116302 AACCTTTTTTAAGGGTTGCCTTAGACAAGGTCTAT-CT
1 AACC-TTTTTAAAGGTTGCTTTAG--ATGGTCTATCCT
* * * * *
118116339 CAACCTTTTT-AAGATTG-TCTTAAACGAGTTTATCCC
1 -AACCTTTTTAAAGGTTGCT-TTAGATG-GTCTATCCT
* * * * * *
118116375 AGCCTTTTTTAAGAGTTGCCTTAGACAAGGTTTATCCC
1 AACCTTTTTAAAG-GTTGCTTTAG--ATGGTCTATCCT
* * *
118116413 AACCTTTTTTAAGGGTTGCCTTAGACTGGTCTAT-TT
1 AACC-TTTTTAAAGGTTGCTTTAGA-TGGTCTATCCT
* * * *
118116449 CAACCTTTTT-AAGGCTG-TCTTAGACGGGTCTACCCC
1 -AACCTTTTTAAAGGTTGCT-TTAGA-TGGTCTATCCT
118116485 AACCTTTTTCAAAGGTTG
1 AACCTTTTT-AAAGGTTG
118116503 GCCTTGACTA
Statistics
Matches: 264, Mismatches: 47, Indels: 66
0.70 0.12 0.18
Matches are distributed among these distances:
34 7 0.03
35 62 0.23
36 82 0.31
37 64 0.24
38 38 0.14
39 11 0.04
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (35 bp):
AACCTTTTTAAAGGTTGCTTTAGATGGTCTATCCT
Found at i:118116203 original size:37 final size:36
Alignment explanation
Indices: 118116086--118116244 Score: 112
Period size: 36 Copynumber: 4.5 Consensus size: 36
118116076 CGTGTTTATT
* * * * * *
118116086 CCAACCTTTTT-AAGATTGTCTTAAACGGGTTTATT
1 CCAACCTTTTTAAAGGTTGTTTTAAATGCGTATATC
* * *
118116121 CCAACC-TTTTAAAGGTTGCTTTAGATGCGTCTATC
1 CCAACCTTTTTAAAGGTTGTTTTAAATGCGTATATC
*
118116156 CTAACCTTTTTAAAGGTTGTTTTAAATAAG-GTATATC
1 CCAACCTTTTTAAAGGTTGTTTTAAAT--GCGTATATC
* * * * *
118116193 CCAA-CTTTTTTAAGGTTGTATTAGACG-GCTTTATC
1 CCAACCTTTTTAAAGGTTGTTTTAAATGCG-TATATC
*
118116228 TCAACCTTTTTAAAGGT
1 CCAACCTTTTTAAAGGT
118116245 ATCTTTAGAC
Statistics
Matches: 98, Mismatches: 20, Indels: 11
0.76 0.16 0.09
Matches are distributed among these distances:
34 6 0.06
35 35 0.36
36 47 0.48
37 9 0.09
38 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.42
Consensus pattern (36 bp):
CCAACCTTTTTAAAGGTTGTTTTAAATGCGTATATC
Found at i:118116444 original size:110 final size:109
Alignment explanation
Indices: 118116183--118116534 Score: 326
Period size: 110 Copynumber: 3.2 Consensus size: 109
118116173 TGTTTTAAAT
* ** * *
118116183 AAGGTATATCCCAA-CTTTTTTAA-GGTTGTATTAGACGGCTTTATCTCAACCTTTTTAA-AGGT
1 AAGGTTTATCCCAACCTTTTTTAAGGGTTGCCTTAGACGG-TCTATCTCAACCTTTTTAAGA-CT
* * * * *
118116245 ATCTTTAGACAAGGTTTATCCTAGCC-TTTTT-AGGGTTGCTTTA-A-
64 GTC-TTAGACGA-GTTTATCCCAGCCTTTTTTAAGAGTTGCCTTAGAC
* * * *
118116289 ATGAGTCTATCCTAACCTTTTTTAAGGGTTGCCTTAGACAAGGTCTATCTCAACCTTTTTAAGAT
1 AAG-GTTTATCCCAACCTTTTTTAAGGGTTGCCTTAGAC--GGTCTATCTCAACCTTTTTAAGAC
*
118116354 TGTCTTAAACGAGTTTATCCCAGCCTTTTTTAAGAGTTGCCTTAGAC
63 TGTCTTAGACGAGTTTATCCCAGCCTTTTTTAAGAGTTGCCTTAGAC
* *
118116401 AAGGTTTATCCCAACCTTTTTTAAGGGTTGCCTTAGACTGGTCTATTTCAACCTTTTTAAGGCTG
1 AAGGTTTATCCCAACCTTTTTTAAGGGTTGCCTTAGAC-GGTCTATCTCAACCTTTTTAAGACTG
* * * * *
118116466 TCTTAGACGGGTCTACCCCAACCTTTTTCAA-AGGTTGGCCTT-GAC
65 TCTTAGACGAGTTTATCCCAGCCTTTTTTAAGA-GTT-GCCTTAGAC
* **
118116511 TAGGTTTATCCCAATGTTTTTTAA
1 AAGGTTTATCCCAACCTTTTTTAA
118116535 AGGTCGGCAT
Statistics
Matches: 205, Mismatches: 29, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
106 2 0.01
107 9 0.04
108 21 0.10
109 23 0.11
110 106 0.52
111 42 0.20
112 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (109 bp):
AAGGTTTATCCCAACCTTTTTTAAGGGTTGCCTTAGACGGTCTATCTCAACCTTTTTAAGACTGT
CTTAGACGAGTTTATCCCAGCCTTTTTTAAGAGTTGCCTTAGAC
Found at i:118116471 original size:73 final size:72
Alignment explanation
Indices: 118116067--118116511 Score: 306
Period size: 72 Copynumber: 6.2 Consensus size: 72
118116057 AGAAAATAAA
* * * * * *
118116067 TGCCTTAGAC-GTGTTTATTCCAACCTTTTTAAGATTGTCTTAAAC-GGGTTTATTCCAACCTTT
1 TGCCTTAGACTGAGTCTATTCCAACCTTTTTAAGGTTGTCTTAGACAAGGTTTATCCCAACCTTT
*
118116130 TAAAGGT
66 TTAAGGT
* * * * * * *
118116137 TGCTTTAGA-TGCGTCTA-TCCTAACCTTTTTAAAGGTTGTTTTAAATAAGGTATATCCCAACTT
1 TGCCTTAGACTGAGTCTATTCC-AACCTTTTT-AAGGTTGTCTTAGACAAGGTTTATCCCAACCT
118116200 TTTTAAGGT
64 TTTTAAGGT
** * * * *
118116209 TGTATTAGAC-G-G-CTTTATCTCAACCTTTTTAAAGG-TATCTTTAGACAAGGTTTATCCTAGC
1 TGCCTTAGACTGAGTCTAT-TC-CAACCTTTTT-AAGGTTGTC-TTAGACAAGGTTTATCCCAAC
*
118116270 CTTTTTAGGGT
62 CTTTTTAAGGT
* * * * *
118116281 TGCTTTA-AATGAGTCTA-TCCTAACCTTTTTTAAGGGTTGCCTTAGACAAGGTCTATCTCAACC
1 TGCCTTAGACTGAGTCTATTCC-AACC-TTTTTAA-GGTTGTCTTAGACAAGGTTTATCCCAACC
*
118116344 TTTTTAAGAT
63 TTTTTAAGGT
* * * * * *
118116354 TGTCTTAAAC-GAGTTTATCCCAGCCTTTTTTAAGAGTTGCCTTAGACAAGGTTTATCCCAACCT
1 TGCCTTAGACTGAGTCTATTCCAACC-TTTTTAAG-GTTGTCTTAGACAAGGTTTATCCCAACC-
118116418 TTTTTAAGGGT
63 TTTTTAA-GGT
* * * * *
118116429 TGCCTTAGACTG-GTCTATTTCAACCTTTTTAAGGCTGTCTTAGAC-GGGTCTACCCCAACCTTT
1 TGCCTTAGACTGAGTCTATTCCAACCTTTTTAAGGTTGTCTTAGACAAGGTTTATCCCAACCTTT
118116492 TTCAAAGGT
66 TT--AAGGT
118116501 TGGCCTT-GACT
1 T-GCCTTAGACT
118116512 AGGTTTATCC
Statistics
Matches: 295, Mismatches: 55, Indels: 48
0.74 0.14 0.12
Matches are distributed among these distances:
69 3 0.01
70 24 0.08
71 22 0.07
72 104 0.35
73 100 0.34
74 22 0.07
75 19 0.06
76 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (72 bp):
TGCCTTAGACTGAGTCTATTCCAACCTTTTTAAGGTTGTCTTAGACAAGGTTTATCCCAACCTTT
TTAAGGT
Found at i:118117997 original size:30 final size:30
Alignment explanation
Indices: 118117961--118118017 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
118117951 CTGGGCATTT
*
118117961 CCACACGGGCTGGACACATGCCCATGTAAG
1 CCACACGGGCTAGACACATGCCCATGTAAG
*
118117991 CCACACGGGCTAGACTCATGCCCATGT
1 CCACACGGGCTAGACACATGCCCATGT
118118018 GCCAATCCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.25, C:0.35, G:0.25, T:0.16
Consensus pattern (30 bp):
CCACACGGGCTAGACACATGCCCATGTAAG
Found at i:118119993 original size:30 final size:30
Alignment explanation
Indices: 118119958--118120015 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
118119948 CACGGCTATG
* *
118119958 ACACACGGGCGTGTGGCTTACCCGTGTGTC
1 ACACACGGGCGTATAGCTTACCCGTGTGTC
*
118119988 ACACACGGGCGTATAGTTTACCCGTGTG
1 ACACACGGGCGTATAGCTTACCCGTGTG
118120016 GAAATGCCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (30 bp):
ACACACGGGCGTATAGCTTACCCGTGTGTC
Done.