Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 379 of 433
Found at i:118446945 original size:57 final size:59
Alignment explanation
Indices: 118446853--118446973 Score: 176
Period size: 58 Copynumber: 2.1 Consensus size: 59
118446843 TCATTTTCAT
* *
118446853 TTTTCATTTTTATTTTGGAGGAAAACCACATTCA-TTTCTAAATGATT-TCATTTCTCCA
1 TTTTCATTTTCATTTTGGAGGAAAACCACAATCATTTTC-AAATGATTCTCATTTCTCCA
* *
118446911 TTTTCATTTTCATTTTGGA-GAAAACCATAATCATTTTCAAATGTTTCTCATTTCTCCA
1 TTTTCATTTTCATTTTGGAGGAAAACCACAATCATTTTCAAATGATTCTCATTTCTCCA
118446969 TTTTC
1 TTTTC
118446974 TCCATTTTCA
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
57 19 0.33
58 38 0.67
ACGTcount: A:0.26, C:0.18, G:0.07, T:0.48
Consensus pattern (59 bp):
TTTTCATTTTCATTTTGGAGGAAAACCACAATCATTTTCAAATGATTCTCATTTCTCCA
Found at i:118446990 original size:8 final size:9
Alignment explanation
Indices: 118446961--118446999 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
118446951 ATGTTTCTCA
118446961 TTTCTCCAT
1 TTTCTCCAT
118446970 TTTCTCCAT
1 TTTCTCCAT
*
118446979 TTTCACCAT
1 TTTCTCCAT
*
118446988 TTCTATCCAT
1 TT-TCTCCAT
118446998 TT
1 TT
118447000 ATGTTCATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
9 19 0.73
10 7 0.27
ACGTcount: A:0.15, C:0.31, G:0.00, T:0.54
Consensus pattern (9 bp):
TTTCTCCAT
Found at i:118448981 original size:61 final size:62
Alignment explanation
Indices: 118448885--118449007 Score: 230
Period size: 61 Copynumber: 2.0 Consensus size: 62
118448875 AAATATAATT
118448885 GGTATAGGTTTATTAACTTAGTTAGTGATCAACAAATCAATCGACCATCGTTTTATTATTTA
1 GGTATAGGTTTATTAACTTAGTTAGTGATCAACAAATCAATCGACCATCGTTTTATTATTTA
*
118448947 GGTATAGGTTTA-TAGCTTAGTTAGTGATCAACAAATCAATCGACCATCGTTTTATTATTTA
1 GGTATAGGTTTATTAACTTAGTTAGTGATCAACAAATCAATCGACCATCGTTTTATTATTTA
118449008 CATTATCTAA
Statistics
Matches: 60, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
61 48 0.80
62 12 0.20
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.40
Consensus pattern (62 bp):
GGTATAGGTTTATTAACTTAGTTAGTGATCAACAAATCAATCGACCATCGTTTTATTATTTA
Found at i:118453561 original size:16 final size:16
Alignment explanation
Indices: 118453540--118453570 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
118453530 ATTTAATGTG
118453540 TAATTTGATAAAATTT
1 TAATTTGATAAAATTT
*
118453556 TAATTTGATATAATT
1 TAATTTGATAAAATT
118453571 ATATATATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (16 bp):
TAATTTGATAAAATTT
Found at i:118455596 original size:6 final size:6
Alignment explanation
Indices: 118455585--118455628 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
118455575 ATGGTGGTGC
* * *
118455585 TGGAGG TGGAGG TGGAGG TGGAGG GGGAGG CGGAGG AGGAGG TG
1 TGGAGG TGGAGG TGGAGG TGGAGG TGGAGG TGGAGG TGGAGG TG
118455629 CCTCTGGTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.18, C:0.02, G:0.68, T:0.11
Consensus pattern (6 bp):
TGGAGG
Found at i:118455827 original size:9 final size:9
Alignment explanation
Indices: 118455813--118455851 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
118455803 TGCAAGGTAT
*
118455813 TGGTGGTGG
1 TGGTGGAGG
118455822 TGGTGGAGG
1 TGGTGGAGG
* *
118455831 TGGAGAAGG
1 TGGTGGAGG
118455840 TGGTGGAGG
1 TGGTGGAGG
118455849 TGG
1 TGG
118455852 CAGTAGTTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.13, C:0.00, G:0.64, T:0.23
Consensus pattern (9 bp):
TGGTGGAGG
Found at i:118455939 original size:6 final size:6
Alignment explanation
Indices: 118455925--118455968 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
118455915 CGAAGGGGTG
* * *
118455925 GGAGGT GGTGGT GGTGGT GGAGGG GGAGGT GGAGGT GGAGGT GG
1 GGAGGT GGAGGT GGAGGT GGAGGT GGAGGT GGAGGT GGAGGT GG
118455969 TAAAGGTTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.11, C:0.00, G:0.70, T:0.18
Consensus pattern (6 bp):
GGAGGT
Found at i:118456287 original size:3 final size:3
Alignment explanation
Indices: 118456273--118456323 Score: 84
Period size: 3 Copynumber: 16.7 Consensus size: 3
118456263 AGAGGTGGGA
*
118456273 GGT GGA GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGGT
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT -GGT
118456319 GGT GG
1 GGT GG
118456324 AGGTTCTAGT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 42 0.93
4 3 0.07
ACGTcount: A:0.02, C:0.00, G:0.69, T:0.29
Consensus pattern (3 bp):
GGT
Found at i:118456461 original size:18 final size:18
Alignment explanation
Indices: 118456440--118456475 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
118456430 GGTGGTTCGA
* *
118456440 GTGGAGGTGGAGGCGGAG
1 GTGGAAGTGGAGGAGGAG
118456458 GTGGAAGTGGAGGAGGAG
1 GTGGAAGTGGAGGAGGAG
118456476 AAGGGATGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.03, G:0.64, T:0.11
Consensus pattern (18 bp):
GTGGAAGTGGAGGAGGAG
Found at i:118459695 original size:23 final size:23
Alignment explanation
Indices: 118459668--118459713 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
118459658 ATTTCACTGT
* *
118459668 TATTGTTATTTTTATATTAATTA
1 TATTGCTATTTTTATACTAATTA
118459691 TATTGCTATTTTTATACTAATTA
1 TATTGCTATTTTTATACTAATTA
118459714 CAAATAAGCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.61
Consensus pattern (23 bp):
TATTGCTATTTTTATACTAATTA
Found at i:118468346 original size:71 final size:71
Alignment explanation
Indices: 118468225--118468361 Score: 238
Period size: 71 Copynumber: 1.9 Consensus size: 71
118468215 TATCATAACC
* *
118468225 AAATGGGTAAAAGTTATTATTCTTTACTGGAAAAATAATAATTAACTCTGAGCAAGTAAAACAAT
1 AAATCGGTAAAAGTTATTATTCTTTACTGAAAAAATAATAATTAACTCTGAGCAAGTAAAACAAT
118468290 TCATAT
66 TCATAT
* *
118468296 AAATCGGTAAAAGTTATTATTCTTTACTGAAAAAATAATAATTAACTCTGAGTAAGTACAACAAT
1 AAATCGGTAAAAGTTATTATTCTTTACTGAAAAAATAATAATTAACTCTGAGCAAGTAAAACAAT
118468361 T
66 T
118468362 TCATCCTTAA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (71 bp):
AAATCGGTAAAAGTTATTATTCTTTACTGAAAAAATAATAATTAACTCTGAGCAAGTAAAACAAT
TCATAT
Found at i:118471720 original size:29 final size:29
Alignment explanation
Indices: 118471677--118471735 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
118471667 TGTGATTAGC
* *
118471677 CCGTGTGAGTGACATG-CTAGTGTCTCAGG
1 CCGTGTGAATAACATGCCTA-TGTCTCAGG
118471706 CCGTGTGAATAACATGCCTATGTCTCAGG
1 CCGTGTGAATAACATGCCTATGTCTCAGG
118471735 C
1 C
118471736 TATATAGGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 24 0.89
30 3 0.11
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (29 bp):
CCGTGTGAATAACATGCCTATGTCTCAGG
Found at i:118473000 original size:24 final size:23
Alignment explanation
Indices: 118472973--118473026 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
118472963 TTATAATGGA
* *
118472973 AAGCTCACACAAAGCCATATCGGG
1 AAGCTCACAAAAAGCC-TATCGAG
*
118472997 AAGCCCACAAAAAGCCTATCGAG
1 AAGCTCACAAAAAGCCTATCGAG
118473020 AAGCTCA
1 AAGCTCA
118473027 TCTAGGCTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
23 12 0.46
24 14 0.54
ACGTcount: A:0.41, C:0.30, G:0.19, T:0.11
Consensus pattern (23 bp):
AAGCTCACAAAAAGCCTATCGAG
Found at i:118473102 original size:24 final size:24
Alignment explanation
Indices: 118473036--118473105 Score: 65
Period size: 24 Copynumber: 2.9 Consensus size: 24
118473026 ATCTAGGCTA
*
118473036 TATAACAAGAAGC-T-CATAAGAAC
1 TATATCAAGAAGCTTACA-AAGAAC
* *
118473059 TATCTTCAGGAAG-TTCACAAAGAAC
1 TAT-ATCAAGAAGCTT-ACAAAGAAC
118473084 TATATCAAGAAGCTTACAAAGA
1 TATATCAAGAAGCTTACAAAGA
118473106 GCCATAAAAC
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
23 3 0.08
24 21 0.57
25 11 0.30
26 2 0.05
ACGTcount: A:0.47, C:0.17, G:0.14, T:0.21
Consensus pattern (24 bp):
TATATCAAGAAGCTTACAAAGAAC
Found at i:118473190 original size:27 final size:27
Alignment explanation
Indices: 118473160--118473216 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
118473150 AGCGAGCACT
*
118473160 ATCGGGAAACTCACAAAGAGCCATATA
1 ATCGGGAAACTCACAAAGAGCAATATA
* **
118473187 ATCGGGAAGCTCATGAAGAGCAATATA
1 ATCGGGAAACTCACAAAGAGCAATATA
118473214 ATC
1 ATC
118473217 AAGAAGCTCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.18
Consensus pattern (27 bp):
ATCGGGAAACTCACAAAGAGCAATATA
Found at i:118473222 original size:27 final size:26
Alignment explanation
Indices: 118473175--118473233 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
118473165 GAAACTCACA
* **
118473175 AAGAGCCATATAATCGGGAAGCTCAT
1 AAGAGCAATATAATCAAGAAGCTCAT
118473201 GAAGAGCAATATAATCAAGAAGCTCAT
1 -AAGAGCAATATAATCAAGAAGCTCAT
118473228 AAGAGC
1 AAGAGC
118473234 TAAGGTGTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.44, C:0.17, G:0.22, T:0.17
Consensus pattern (26 bp):
AAGAGCAATATAATCAAGAAGCTCAT
Found at i:118474689 original size:46 final size:46
Alignment explanation
Indices: 118474636--118474852 Score: 195
Period size: 46 Copynumber: 4.6 Consensus size: 46
118474626 ATTGTGGGCT
** *
118474636 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACGAGAGCC
* * *
118474682 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCAAAACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CAAGACGAGAGCC
* * * * * * *
118474730 AGTGCAAAATATGTCTAGGACATGCATCGACCTCGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACG-AGAGCC
* ** * * *
118474776 AGTGTAAGACATGTCTGGGATATGCATCGGTTACAAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACGAGAGCC
118474822 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
118474853 ATATGAGATA
Statistics
Matches: 135, Mismatches: 28, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
45 1 0.01
46 63 0.47
47 43 0.32
48 28 0.21
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACGAGAGCC
Found at i:118480333 original size:14 final size:13
Alignment explanation
Indices: 118480312--118480344 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
118480302 AAATATTTAA
118480312 CTTGTTCTTAATT
1 CTTGTTCTTAATT
118480325 CTGTGTTCTTAATT
1 CT-TGTTCTTAATT
118480339 CTTGTT
1 CTTGTT
118480345 TTGATATCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.12, C:0.15, G:0.12, T:0.61
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:118487377 original size:17 final size:17
Alignment explanation
Indices: 118487357--118487402 Score: 74
Period size: 17 Copynumber: 2.7 Consensus size: 17
118487347 TTTAGGATAA
*
118487357 ATTTTAATTTATTTATG
1 ATTTTAATTGATTTATG
118487374 ATTTTAATTGATTTATG
1 ATTTTAATTGATTTATG
*
118487391 ATTTTGATTGAT
1 ATTTTAATTGAT
118487403 ATATCTTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (17 bp):
ATTTTAATTGATTTATG
Found at i:118490207 original size:23 final size:24
Alignment explanation
Indices: 118490157--118490210 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
118490147 GCCTTATAAC
* *
118490157 GAGAAGCTCACACAGAGCCGTATT
1 GAGAAGCCCACAAAGAGCCGTATT
118490181 GAGAAGCCCACAAAGAGCC-TATT
1 GAGAAGCCCACAAAGAGCCGTATT
118490204 GAGAAGC
1 GAGAAGC
118490211 TTATCCGGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
23 11 0.39
24 17 0.61
ACGTcount: A:0.37, C:0.24, G:0.26, T:0.13
Consensus pattern (24 bp):
GAGAAGCCCACAAAGAGCCGTATT
Found at i:118490407 original size:27 final size:28
Alignment explanation
Indices: 118490346--118490412 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 28
118490336 AGCGAGCACT
* *
118490346 ATCGGGAAGCTCACAAAGAACCGATTTA
1 ATCGAGAAGCTCACAAAGAACCGATATA
* * *
118490374 A-CAAGAAGCTCACGAAGAATC-ATATA
1 ATCGAGAAGCTCACAAAGAACCGATATA
118490400 ATCGAGAAGCTCA
1 ATCGAGAAGCTCA
118490413 TAAGAGCTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
26 5 0.16
27 26 0.81
28 1 0.03
ACGTcount: A:0.43, C:0.21, G:0.19, T:0.16
Consensus pattern (28 bp):
ATCGAGAAGCTCACAAAGAACCGATATA
Found at i:118498789 original size:18 final size:16
Alignment explanation
Indices: 118498763--118498800 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
118498753 TAGCCATTTT
*
118498763 TTTAATTTTTTTTGCAA
1 TTTAAATTTTTTT-CAA
118498780 TTTAAATTTTTTTCAA
1 TTTAAATTTTTTTCAA
118498796 TTTAA
1 TTTAA
118498801 TTATTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (16 bp):
TTTAAATTTTTTTCAA
Found at i:118498791 original size:16 final size:16
Alignment explanation
Indices: 118498770--118498800 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
118498760 TTTTTTAATT
118498770 TTTTTTGCAATTTAAA
1 TTTTTTGCAATTTAAA
*
118498786 TTTTTTTCAATTTAA
1 TTTTTTGCAATTTAA
118498801 TTATTAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.61
Consensus pattern (16 bp):
TTTTTTGCAATTTAAA
Found at i:118501228 original size:32 final size:32
Alignment explanation
Indices: 118501187--118501248 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
118501177 ATGAGGAACG
118501187 AAAACTATAAATCGATGAACTAGATGAATGGT
1 AAAACTATAAATCGATGAACTAGATGAATGGT
118501219 AAAACTATAAATCGATGAACTAGATGAATG
1 AAAACTATAAATCGATGAACTAGATGAATG
118501249 ACAGACACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.48, C:0.10, G:0.18, T:0.24
Consensus pattern (32 bp):
AAAACTATAAATCGATGAACTAGATGAATGGT
Found at i:118502611 original size:3 final size:3
Alignment explanation
Indices: 118502603--118502676 Score: 130
Period size: 3 Copynumber: 24.7 Consensus size: 3
118502593 ACCCCTCCCA
118502603 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
118502651 ATT ATT ATT ATT ATC ATT ATC ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
118502677 CATATTTAAT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:118504270 original size:17 final size:19
Alignment explanation
Indices: 118504235--118504273 Score: 55
Period size: 17 Copynumber: 2.1 Consensus size: 19
118504225 AGTCCTTTTA
118504235 TTTTATTGTTATTACTATTT
1 TTTTATTGTTATTA-TATTT
118504255 TTTTATT-TTATT-TATTT
1 TTTTATTGTTATTATATTT
118504272 TT
1 TT
118504274 GAAGACTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.37
19 5 0.26
20 7 0.37
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.77
Consensus pattern (19 bp):
TTTTATTGTTATTATATTT
Found at i:118513343 original size:93 final size:93
Alignment explanation
Indices: 118513231--118513401 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
118513221 GCCCATAAGT
* *
118513231 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
118513296 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
118513324 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
118513389 CGAGTTCGGATGC
66 CGAGCTCGGATGC
118513402 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:118513398 original size:46 final size:46
Alignment explanation
Indices: 118513223--118513398 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
118513213 TGTAACCCGC
* *
118513223 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
118513269 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
118513315 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
118513362 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
118513399 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:118519253 original size:54 final size:55
Alignment explanation
Indices: 118519068--118519263 Score: 349
Period size: 55 Copynumber: 3.6 Consensus size: 55
118519058 TAATTGTCAC
* *
118519068 TGCAGGGGATTTAGCCTAGACTGGTAATCCTGACAATACTCTATGAGTTTTATAT
1 TGCAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTTATAT
*
118519123 TACAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTTATAT
1 TGCAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTTATAT
118519178 TGCAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAG-TTTATAT
1 TGCAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTTATAT
*
118519232 TGTAGGGGATTTAGCCTGGACTGGTAATCCCG
1 TGCAGGGGATTTAGCCTGGACTGGTAATCCCG
118519264 CTGCAAGGTT
Statistics
Matches: 136, Mismatches: 5, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
54 38 0.28
55 98 0.72
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (55 bp):
TGCAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTTATAT
Found at i:118521536 original size:40 final size:39
Alignment explanation
Indices: 118521479--118521702 Score: 299
Period size: 40 Copynumber: 5.6 Consensus size: 39
118521469 TCGAATGATG
* *
118521479 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
118521519 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
* *
118521559 TCCGGGCTAAGCCCAAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
118521598 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
*
118521637 TCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
*
118521678 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
118521703 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 73 0.44
40 84 0.51
41 9 0.05
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:118521725 original size:79 final size:78
Alignment explanation
Indices: 118521479--118521702 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 78
118521469 TCGAATGATG
* * * * * *
118521479 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAA-ATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAGCCCCGAAGGCATTTGTGC-GAGTTACTAATA-CCGGGCTAAG-CCCGAAGGCAT
118521542 TTGTGCGAGTTACTAA
63 TTGTGCGAGTTACTAA
* * *
118521558 TTCCGGGCTAAG-CCCAAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTT
1 -TCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTT
118521622 GTGCGAGTTACTAAA
65 GTGCGAGTTACT-AA
*
118521637 TCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
118521701 TG
64 TG
118521703 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 36 0.28
79 60 0.47
80 32 0.25
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTTG
TGCGAGTTACTAA
Found at i:118521733 original size:79 final size:79
Alignment explanation
Indices: 118521491--118521735 Score: 241
Period size: 79 Copynumber: 3.1 Consensus size: 79
118521481 CGGGCTAAGT
* * * * **
118521491 CCCGAAGGC-TTTGTGCTAAGTGACTAA-ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA
1 CCCGAAGGCATTTGTGC-GAGTTACTAATA-CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA
* * *
118521554 CTAATTCCGGGCT-AAG
63 CTAAATCCGGGTTAAAC
* * **
118521570 CCCAAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 CCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTA
*
118521635 AATCCGGGTTAAGC
66 AATCCGGGTTAAAC
*
118521649 CCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 CCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-
*
118521712 CTATATCC-GGTTAAAC
63 CTAAATCCGGGTTAAAC
*
118521728 TCCGAAGG
1 CCCGAAGG
118521736 TACGTGATTC
Statistics
Matches: 142, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
78 35 0.25
79 75 0.53
80 32 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTA
AATCCGGGTTAAAC
Found at i:118526295 original size:40 final size:40
Alignment explanation
Indices: 118526246--118526413 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
118526236 TCTTCGGAAT
* * * *
118526246 TTAG-CCGGATACAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
118526285 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
118526325 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
118526365 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
118526405 TTAGCCCGG
1 TTAGCCCGG
118526414 GTATCATTCG
Statistics
Matches: 106, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 3 0.03
40 102 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:118532861 original size:11 final size:11
Alignment explanation
Indices: 118532845--118532869 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
118532835 CAATAAACTT
118532845 ATCATTCAATG
1 ATCATTCAATG
118532856 ATCATTCAATG
1 ATCATTCAATG
118532867 ATC
1 ATC
118532870 GATAAAGCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (11 bp):
ATCATTCAATG
Found at i:118534927 original size:24 final size:24
Alignment explanation
Indices: 118534895--118534952 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
118534885 CCTAAGTTTG
118534895 GCATTTTTTTCTAAAGTGGTACTT
1 GCATTTTTTTCTAAAGTGGTACTT
*
118534919 GCATTTTTTCCTAAAGTGGTACTT
1 GCATTTTTTTCTAAAGTGGTACTT
*
118534943 GCTTTTTTTT
1 GCATTTTTTT
118534953 TTTTTTTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.17, C:0.14, G:0.16, T:0.53
Consensus pattern (24 bp):
GCATTTTTTTCTAAAGTGGTACTT
Found at i:118537502 original size:14 final size:14
Alignment explanation
Indices: 118537485--118537526 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
118537475 TTAATTTAGA
*
118537485 AAATTTAATTAATT
1 AAATATAATTAATT
*
118537499 AAATATATTTAATT
1 AAATATAATTAATT
118537513 AAA-A-AATTAATT
1 AAATATAATTAATT
118537525 AA
1 AA
118537527 TTTAGTTAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 9 0.36
13 1 0.04
14 15 0.60
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AAATATAATTAATT
Found at i:118538213 original size:18 final size:18
Alignment explanation
Indices: 118538187--118538221 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
118538177 ATCCTTGGAT
*
118538187 TTTTCATTTTTCATTTAG
1 TTTTAATTTTTCATTTAG
*
118538205 TTTTAATTTTTCTTTTA
1 TTTTAATTTTTCATTTA
118538222 AAAATTATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.09, G:0.03, T:0.71
Consensus pattern (18 bp):
TTTTAATTTTTCATTTAG
Found at i:118539895 original size:61 final size:58
Alignment explanation
Indices: 118539762--118539895 Score: 144
Period size: 60 Copynumber: 2.2 Consensus size: 58
118539752 TATTAAATTT
* * * *
118539762 AATAATAAATAATTTAATTATATTTTAATATAATTATTACCAAATGTAATTTAATAAA
1 AATAATAAATAATTTAATAACATTTTAATATAATTATTACAAAATATAATTTAATAAA
* *
118539820 AATAAAATATATAATTTAATAACATTCTTAATATAATTATTATTAAAATATGAA-TTAATAAA
1 AAT--AATAAATAATTTAATAACATT-TTAATATAATTATTA-CAAAATAT-AATTTAATAAA
*
118539882 AATCATAACATAAT
1 AATAATAA-ATAAT
118539896 CTCATGAGAT
Statistics
Matches: 62, Mismatches: 8, Indels: 9
0.78 0.10 0.11
Matches are distributed among these distances:
58 3 0.05
60 21 0.34
61 20 0.32
62 16 0.26
63 2 0.03
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.40
Consensus pattern (58 bp):
AATAATAAATAATTTAATAACATTTTAATATAATTATTACAAAATATAATTTAATAAA
Found at i:118539970 original size:2 final size:2
Alignment explanation
Indices: 118539963--118539997 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
118539953 TCATTTTATG
118539963 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
118539998 GAAAAATATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:118561495 original size:64 final size:64
Alignment explanation
Indices: 118561391--118561544 Score: 263
Period size: 64 Copynumber: 2.3 Consensus size: 64
118561381 CATCATATGT
*
118561391 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACG-G-GA-TAT-ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
118561456 TAG
62 TAG
118561459 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
1 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
118561523 ACAAGAGAGCTACGGGATATAT
1 ACAAGAGAGCTACGGGATATAT
118561545 ATAGGACACC
Statistics
Matches: 85, Mismatches: 1, Indels: 4
0.94 0.01 0.04
Matches are distributed among these distances:
64 66 0.78
65 3 0.04
66 1 0.01
67 1 0.01
68 14 0.16
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.24
Consensus pattern (64 bp):
ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:118561621 original size:101 final size:101
Alignment explanation
Indices: 118561448--118561633 Score: 268
Period size: 101 Copynumber: 1.8 Consensus size: 101
118561438 TACTATGTGT
* * * *
118561448 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGGGTGATACTATGTGTA
1 ACACCATGTAGACAAGAGAGCTACGAGATAAATG-AGCTAGGTCACATGGGTGATACTAAGTGTA
118561513 CACCATGTAG-ACAAGAGAGCTACGGGATATATATAGG
65 CACCATGT-GTACAAGAGAGCTACGGGATATATATAGG
* * *
118561550 ACACCATGTAGACAAGAGAGCTATGAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTGTT
1 ACACCATGTAGACAAGAGAGCTACGAGATAAA-TGAGCTAGGTCACATGGGTGATACTAAGTGTA
118561614 CACCATGTGTACAAGAGAGC
65 CACCATGTGTACAAGAGAGC
118561634 CAAAATTATG
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
100 1 0.01
101 43 0.57
102 29 0.39
103 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (101 bp):
ACACCATGTAGACAAGAGAGCTACGAGATAAATGAGCTAGGTCACATGGGTGATACTAAGTGTAC
ACCATGTGTACAAGAGAGCTACGGGATATATATAGG
Found at i:118567623 original size:68 final size:67
Alignment explanation
Indices: 118567551--118567700 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
118567541 CATCATGTGT
* * * *
118567551 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
118567613 ATGTAG
62 ATGTAG
** * *
118567619 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
118567684 AG
66 AG
118567686 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
118567701 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:118567656 original size:64 final size:64
Alignment explanation
Indices: 118567575--118567758 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
118567565 AGACATTATG
* *
118567575 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
118567639 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
118567704 AA
63 AA
* * * *
118567706 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
118567759 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:118568846 original size:2 final size:2
Alignment explanation
Indices: 118568839--118568865 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
118568829 TCATGACATG
118568839 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
118568866 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:118572075 original size:68 final size:67
Alignment explanation
Indices: 118572003--118572152 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
118571993 CATCATGTGT
* * * *
118572003 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
118572065 ATGTAG
62 ATGTAG
** * *
118572071 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
118572136 AG
66 AG
118572138 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
118572153 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:118572108 original size:64 final size:64
Alignment explanation
Indices: 118572027--118572210 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
118572017 AGACATTATG
* *
118572027 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
118572091 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
118572156 AA
63 AA
* * * *
118572158 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
118572211 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:118572944 original size:12 final size:12
Alignment explanation
Indices: 118572927--118572951 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
118572917 AAACAGGGAA
118572927 ATTTTAATGAAT
1 ATTTTAATGAAT
118572939 ATTTTAATGAAT
1 ATTTTAATGAAT
118572951 A
1 A
118572952 AACTGTACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATTTTAATGAAT
Found at i:118573311 original size:2 final size:2
Alignment explanation
Indices: 118573304--118573332 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
118573294 TCATGACATG
118573304 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
118573333 GACTAGTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:118577383 original size:63 final size:64
Alignment explanation
Indices: 118577284--118577412 Score: 226
Period size: 63 Copynumber: 2.0 Consensus size: 64
118577274 CACATGGAGG
*
118577284 TATTCTTATCACATCAGGAATGAGGCGCATCTTAATAGAGTTTGAATTATCAAA-ATTAAGTTA
1 TATTCTTATCACATCAGGAATGAGGCGCATCTTAATAGAGTTTGAATTACCAAATATTAAGTTA
118577347 TATTCTTATCACATC-GAGAATGAGGCGCATCTTAATAGAGTTTGAATTACCAAATATTAAGTTA
1 TATTCTTATCACATCAG-GAATGAGGCGCATCTTAATAGAGTTTGAATTACCAAATATTAAGTTA
118577411 TA
1 TA
118577413 AATCAAGTTG
Statistics
Matches: 63, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
62 1 0.02
63 51 0.81
64 11 0.17
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (64 bp):
TATTCTTATCACATCAGGAATGAGGCGCATCTTAATAGAGTTTGAATTACCAAATATTAAGTTA
Found at i:118578620 original size:11 final size:12
Alignment explanation
Indices: 118578598--118578623 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
118578588 GAATGCAGTT
118578598 AAAAAGGAAAAA
1 AAAAAGGAAAAA
118578610 AAAAAGGAAAAA
1 AAAAAGGAAAAA
118578622 AA
1 AA
118578624 GGGTTGCAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (12 bp):
AAAAAGGAAAAA
Found at i:118587926 original size:3 final size:3
Alignment explanation
Indices: 118587918--118587977 Score: 50
Period size: 3 Copynumber: 19.3 Consensus size: 3
118587908 TTTAGTCTTC
* * *
118587918 ATT ATT ATT ATT GTT ATT ATT CATT A-T ATTT GTT ATTT ATT ATG ATT
1 ATT ATT ATT ATT ATT ATT ATT -ATT ATT A-TT ATT A-TT ATT ATT ATT
*
118587965 ATT ATT TTT ATT A
1 ATT ATT ATT ATT A
118587978 CTTTGTTTTT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
2 2 0.04
3 36 0.80
4 7 0.16
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:118587941 original size:22 final size:22
Alignment explanation
Indices: 118587915--118587977 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
118587905 TTTTTTAGTC
118587915 TTCATTATTATTATTGTTATTA
1 TTCATTATTATTATTGTTATTA
118587937 TTCATTA-TA-T-TTGTTATTTA
1 TTCATTATTATTATTGTTA-TTA
* *
118587957 TT-ATGATTATTATTTTTATTA
1 TTCATTATTATTATTGTTATTA
118587978 CTTTGTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 9 0.26
20 8 0.23
21 6 0.17
22 12 0.34
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.65
Consensus pattern (22 bp):
TTCATTATTATTATTGTTATTA
Found at i:118587969 original size:16 final size:16
Alignment explanation
Indices: 118587918--118587975 Score: 52
Period size: 16 Copynumber: 3.8 Consensus size: 16
118587908 TTTAGTCTTC
118587918 ATTA-TTATTATTG-TT
1 ATTATTTATTA-TGATT
*
118587933 ATTATTCATTAT-ATTT
1 ATTATTTATTATGA-TT
*
118587949 GTTATTTATTATGATT
1 ATTATTTATTATGATT
118587965 ATTATTT-TTAT
1 ATTATTTATTAT
118587976 TACTTTGTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 9 0.26
16 25 0.71
17 1 0.03
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.66
Consensus pattern (16 bp):
ATTATTTATTATGATT
Found at i:118587995 original size:22 final size:22
Alignment explanation
Indices: 118587970--118588044 Score: 55
Period size: 22 Copynumber: 3.4 Consensus size: 22
118587960 TGATTATTAT
118587970 TTTTATTACTTTGTTTTTTTTA
1 TTTTATTACTTTGTTTTTTTTA
* * * *
118587992 TTTTAGTT-TTTTGATTCTTTCA
1 TTTTA-TTACTTTGTTTTTTTTA
**
118588014 TTTT-TTATCTTTGTTTTCTCCTA
1 TTTTATTA-CTTTGTTTT-TTTTA
118588037 TTTTATTA
1 TTTTATTA
118588045 TTTTTAGTAT
Statistics
Matches: 38, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
20 2 0.05
22 25 0.66
23 8 0.21
24 3 0.08
ACGTcount: A:0.13, C:0.09, G:0.05, T:0.72
Consensus pattern (22 bp):
TTTTATTACTTTGTTTTTTTTA
Found at i:118588048 original size:31 final size:29
Alignment explanation
Indices: 118588013--118588096 Score: 73
Period size: 31 Copynumber: 2.7 Consensus size: 29
118588003 TGATTCTTTC
*
118588013 ATTTTTTATCTTTGTTTTCTCCTATTTTATT
1 ATTTTTTAT-TTTGTTTTCTCCTATATT-TT
*
118588044 ATTTTTAGTATTTAT-ATTT-TCCTATATTTT
1 ATTTTT--TATTT-TGTTTTCTCCTATATTTT
118588074 ACTTTATTTATTTTGTTTTCTCC
1 A-TTT-TTTATTTTGTTTTCTCC
118588097 ATGACCTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
29 1 0.02
30 11 0.26
31 20 0.47
32 7 0.16
33 4 0.09
ACGTcount: A:0.17, C:0.12, G:0.04, T:0.68
Consensus pattern (29 bp):
ATTTTTTATTTTGTTTTCTCCTATATTTT
Found at i:118589542 original size:6 final size:6
Alignment explanation
Indices: 118589507--118589562 Score: 60
Period size: 6 Copynumber: 9.3 Consensus size: 6
118589497 TTTGAGTCCA
*** *
118589507 TTTA-T TTTATCT TTTATT TTTCGC TTTATT TCTATT TTTATT TTTATT
1 TTTATT TTTAT-T TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
118589555 TTTATT TT
1 TTTATT TT
118589563 AGTTCTAAAG
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
5 4 0.10
6 31 0.76
7 6 0.15
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:118593927 original size:3 final size:3
Alignment explanation
Indices: 118593919--118593989 Score: 99
Period size: 3 Copynumber: 23.7 Consensus size: 3
118593909 AAAGTATATA
118593919 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
* * *
118593968 AA- AAT AAT GAT AGT AAG AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA
118593990 GAACAATATC
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
2 2 0.03
3 55 0.92
4 3 0.05
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:118594730 original size:31 final size:31
Alignment explanation
Indices: 118594693--118594751 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
118594683 TTTCATTGGA
118594693 GACGACAACCTCGGCCCCTCCACGACGGCGC
1 GACGACAACCTCGGCCCCTCCACGACGGCGC
118594724 GACGACAACCTCGGCCCCTCCACGACGG
1 GACGACAACCTCGGCCCCTCCACGACGG
118594752 TGCAAATGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.20, C:0.47, G:0.25, T:0.07
Consensus pattern (31 bp):
GACGACAACCTCGGCCCCTCCACGACGGCGC
Found at i:118595998 original size:44 final size:45
Alignment explanation
Indices: 118595880--118596006 Score: 159
Period size: 45 Copynumber: 2.8 Consensus size: 45
118595870 GGGCTGGTGG
* * *
118595880 CTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCAT
1 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATCTGACAA
* *
118595925 CTCCAATCTACTCCACTGCAACCTT-AAGGAGATAAGATCT-ACAA
1 CTTCAATCTGCTCCACTGCAA-CTTCAAGGAGATAAGATCTGACAA
* * *
118595969 CTTCAATCTGCTCCACTACTACTTCAAGGAGATGAGAT
1 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGAT
118596007 TTGTGGATTC
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
43 3 0.04
44 31 0.44
45 33 0.47
46 3 0.04
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.26
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATCTGACAA
Found at i:118596924 original size:65 final size:65
Alignment explanation
Indices: 118596805--118596935 Score: 172
Period size: 65 Copynumber: 2.0 Consensus size: 65
118596795 CAGCCTGGAC
* * * *
118596805 AAGAAGGAAATTGATTGGGAGCATAGCTCGAAATGAATAAATTAATCAAAGATAGCAAATGCAAT
1 AAGAAGGAAATTGATTGGGAGCATAGCTCAAAACGAATAAAGTAATCAAAGATAGAAAATGCAAT
** * * * *
118596870 AAGAAGGAAATTGATTGGGAGTGTAGCTCAAAACGAATACAGTAATTAAGGATAGAAAATTCAAT
1 AAGAAGGAAATTGATTGGGAGCATAGCTCAAAACGAATAAAGTAATCAAAGATAGAAAATGCAAT
118596935 A
1 A
118596936 TGGGTAAGAT
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
65 56 1.00
ACGTcount: A:0.47, C:0.08, G:0.22, T:0.22
Consensus pattern (65 bp):
AAGAAGGAAATTGATTGGGAGCATAGCTCAAAACGAATAAAGTAATCAAAGATAGAAAATGCAAT
Found at i:118597231 original size:12 final size:12
Alignment explanation
Indices: 118597214--118597254 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
118597204 TGGCATCTTC
118597214 TTTTTCTTTTCT
1 TTTTTCTTTTCT
*
118597226 TTTTTCTTTTCG
1 TTTTTCTTTTCT
**
118597238 TTTCCCTTTTCT
1 TTTTTCTTTTCT
118597250 TTTTT
1 TTTTT
118597255 TTTCTTGTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (12 bp):
TTTTTCTTTTCT
Found at i:118597258 original size:17 final size:17
Alignment explanation
Indices: 118597211--118597258 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
118597201 CCTTGGCATC
**
118597211 TTCTTTTTCTTTTCTTTT
1 TTCTTTTT-TTTTCCCTT
**
118597229 TTCTTTTCGTTTCCCTT
1 TTCTTTTTTTTTCCCTT
118597246 TTCTTTTTTTTTC
1 TTCTTTTTTTTTC
118597259 TTGTTTTTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
17 17 0.71
18 7 0.29
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (17 bp):
TTCTTTTTTTTTCCCTT
Found at i:118603039 original size:17 final size:18
Alignment explanation
Indices: 118603003--118603044 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
118602993 CAACTAAAAA
*
118603003 AAATAAAGACAAAGACAT
1 AAATAAAGACAAACACAT
*
118603021 AAATAAA-ATAAACACAT
1 AAATAAAGACAAACACAT
118603038 AAATAAA
1 AAATAAA
118603045 TGTAAGAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.71, C:0.10, G:0.05, T:0.14
Consensus pattern (18 bp):
AAATAAAGACAAACACAT
Found at i:118603143 original size:3 final size:3
Alignment explanation
Indices: 118603135--118603196 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
118603125 GTGATGAAGT
118603135 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
118603183 ATA ATA ATA ATA AT
1 ATA ATA ATA ATA AT
118603197 TGATAAAATA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:118609616 original size:40 final size:40
Alignment explanation
Indices: 118609566--118609667 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
118609556 TAGACGAACG
* * *
118609566 ATACTTACTGAATCTACTGAAACATATGCACTTTCTAGCC
1 ATACCTACTGAATCTACTGAAACATATGCACTCTCAAGCC
* * * *
118609606 ATACCTACTGAATTTTCTGAAACGTATGCGCTCTCAAGCC
1 ATACCTACTGAATCTACTGAAACATATGCACTCTCAAGCC
* *
118609646 ATACCTATTGAATCTATTGAAA
1 ATACCTACTGAATCTACTGAAA
118609668 ATAATGCTCT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (40 bp):
ATACCTACTGAATCTACTGAAACATATGCACTCTCAAGCC
Found at i:118609808 original size:37 final size:37
Alignment explanation
Indices: 118609725--118609818 Score: 95
Period size: 37 Copynumber: 2.5 Consensus size: 37
118609715 TCATGGAACG
* *
118609725 TTATCCACTGATATACTGAAGAAGCTCAATCGAGTGA
1 TTATCCACTGATATACTGAAGAAGCTCAAGCGAGTCA
* *
118609762 -AATCTACTGATATACT-AAGTAAAGCTCAAGCGAG-CA
1 TTATCCACTGATATACTGAAG--AAGCTCAAGCGAGTCA
*
118609798 TTATCCACTGAATATATTGAA
1 TTATCCACTG-ATATACTGAA
118609819 CTACTATACT
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
35 3 0.07
36 15 0.33
37 19 0.42
38 6 0.13
39 2 0.04
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (37 bp):
TTATCCACTGATATACTGAAGAAGCTCAAGCGAGTCA
Found at i:118614063 original size:16 final size:17
Alignment explanation
Indices: 118614039--118614073 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
118614029 GCAATAGTCG
*
118614039 AAATGCCGAAAAG-CTA
1 AAATACCGAAAAGCCTA
118614055 AAATACCGAAAAGCCTA
1 AAATACCGAAAAGCCTA
118614072 AA
1 AA
118614074 GTTGGGCTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.54, C:0.20, G:0.14, T:0.11
Consensus pattern (17 bp):
AAATACCGAAAAGCCTA
Found at i:118614354 original size:29 final size:29
Alignment explanation
Indices: 118614289--118614403 Score: 106
Period size: 29 Copynumber: 4.0 Consensus size: 29
118614279 GCATGATTAT
* *
118614289 AATATGATTTGGGCCTAATGGGCCACATG
1 AATATGAATTGGGCCTAATGGGCCATATG
** * * *
118614318 AAGGTGAATTGGGCCTAGTGGACCATAAG
1 AATATGAATTGGGCCTAATGGGCCATATG
* * *
118614347 AATATGAAGTGGGCCAAATGGGCCATTTG
1 AATATGAATTGGGCCTAATGGGCCATATG
* * *
118614376 AATAAG-ATTGGGCCTAGTGGGCTATATG
1 AATATGAATTGGGCCTAATGGGCCATATG
118614404 CATGTATGTA
Statistics
Matches: 65, Mismatches: 21, Indels: 1
0.75 0.24 0.01
Matches are distributed among these distances:
28 17 0.26
29 48 0.74
ACGTcount: A:0.30, C:0.14, G:0.31, T:0.25
Consensus pattern (29 bp):
AATATGAATTGGGCCTAATGGGCCATATG
Found at i:118628627 original size:17 final size:16
Alignment explanation
Indices: 118628604--118628635 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
118628594 GTTGTAACAC
118628604 CCCAAAAATCTCGAAA
1 CCCAAAAATCTCGAAA
118628620 CCCAAAAATCTCGAAA
1 CCCAAAAATCTCGAAA
118628636 TCTTGAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.31, G:0.06, T:0.12
Consensus pattern (16 bp):
CCCAAAAATCTCGAAA
Found at i:118630313 original size:26 final size:27
Alignment explanation
Indices: 118630284--118630336 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
118630274 AATCGTAATT
* *
118630284 AAGG-GAAAATTATCAAAATACCCCTA
1 AAGGTGAAAATGACCAAAATACCCCTA
*
118630310 AAGGTGAAGATGACCAAAATACCCCTA
1 AAGGTGAAAATGACCAAAATACCCCTA
118630337 TGTGTTGAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.47, C:0.21, G:0.15, T:0.17
Consensus pattern (27 bp):
AAGGTGAAAATGACCAAAATACCCCTA
Found at i:118631982 original size:28 final size:31
Alignment explanation
Indices: 118631933--118632004 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 31
118631923 AATCAATTTT
* * *
118631933 ACAATCTAATCATTTTCACATCTAA-GC-TTA
1 ACAATCT-ATCAATTTAACATCAAATGCTTTA
118631963 A-AATCTATCAATTTAACATCAAATGCTTTA
1 ACAATCTATCAATTTAACATCAAATGCTTTA
118631993 ACAATC-ATCAAT
1 ACAATCTATCAAT
118632005 GGAAGCTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
28 14 0.39
29 7 0.19
30 11 0.31
31 4 0.11
ACGTcount: A:0.42, C:0.21, G:0.03, T:0.35
Consensus pattern (31 bp):
ACAATCTATCAATTTAACATCAAATGCTTTA
Found at i:118632838 original size:23 final size:23
Alignment explanation
Indices: 118632793--118632839 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
118632783 ATTTGTTCGT
*
118632793 TTAAACGAACATGTTCGTGAACA
1 TTAAACGAACATGTTCGTAAACA
118632816 TTAAACGAACATGTTC-TCAAACA
1 TTAAACGAACATGTTCGT-AAACA
118632839 T
1 T
118632840 GTTCAACATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 1 0.05
23 21 0.95
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (23 bp):
TTAAACGAACATGTTCGTAAACA
Found at i:118636379 original size:38 final size:38
Alignment explanation
Indices: 118636325--118636400 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
118636315 TACCCGAGGT
118636325 CACGTGTAAGCCACAGAGGACTTAAAACGACCAAAACA
1 CACGTGTAAGCCACAGAGGACTTAAAACGACCAAAACA
*
118636363 CACGTGTAAGCTACAGAGGACTTAAAACGACCAAAACA
1 CACGTGTAAGCCACAGAGGACTTAAAACGACCAAAACA
118636401 ATGCAGGACC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.45, C:0.25, G:0.18, T:0.12
Consensus pattern (38 bp):
CACGTGTAAGCCACAGAGGACTTAAAACGACCAAAACA
Found at i:118639937 original size:14 final size:14
Alignment explanation
Indices: 118639918--118639968 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
118639908 ATATATTAAC
118639918 TTAATATT-TAAGTA
1 TTAATATTATAA-TA
118639932 TTAATATTATAATA
1 TTAATATTATAATA
* *
118639946 TAATATATTATTATA
1 TTA-ATATTATAATA
118639961 TTATATAT
1 TTA-ATAT
118639969 CAAAAACATA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.38
15 20 0.62
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (14 bp):
TTAATATTATAATA
Found at i:118642892 original size:3 final size:3
Alignment explanation
Indices: 118642884--118642941 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
118642874 TCATTCATGT
118642884 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
118642932 TTA TTA TTA T
1 TTA TTA TTA T
118642942 CCAAGATGAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:118648625 original size:276 final size:276
Alignment explanation
Indices: 118648132--118648656 Score: 1023
Period size: 276 Copynumber: 1.9 Consensus size: 276
118648122 GAGGCGTGGA
*
118648132 GTGCAATTTATACTTCGGGCATATCGATAAGGCATTGGTTTTCAGATATGTTGGTGTAATGGTTG
1 GTGCAATTTATACTTCGGGCATATCGATAAGGCATTGGTTTTCAGATATATTGGTGTAATGGTTG
118648197 GATGATTCGTGTATCTGTCTTGAGTTCGTGTCCGATTAATAGGGATTATGAAGAATATACCATTC
66 GATGATTCGTGTATCTGTCTTGAGTTCGTGTCCGATTAATAGGGATTATGAAGAATATACCATTC
*
118648262 TATTTGACATTTGATATGAAATACCAATATTGAATGATGTATATTGTATGTTATTGTTAAAGTAA
131 TATTTGACATTTGATATGAAATACCAATATTGAATGATGTATATTGTATGTAATTGTTAAAGTAA
118648327 TAAAAGATGACATGTGAAAGATCATGCAAACTGGTTAAAGCAAGCTCTCAAGGCATTGGTTTTCA
196 TAAAAGATGACATGTGAAAGATCATGCAAACTGGTTAAAGCAAGCTCTCAAGGCATTGGTTTTCA
118648392 GATATACTTCGGGCAT
261 GATATACTTCGGGCAT
118648408 GTGCAATTTATACTTCGGGCATATCGATAAGGCATTGGTTTTCAGATATATTGGTGTAATGGTTG
1 GTGCAATTTATACTTCGGGCATATCGATAAGGCATTGGTTTTCAGATATATTGGTGTAATGGTTG
*
118648473 GATGATTCGTGTATCTGTCTTGAGTTCGTGTCTGATTAATAGGGATTATGAAGAATATACCATTC
66 GATGATTCGTGTATCTGTCTTGAGTTCGTGTCCGATTAATAGGGATTATGAAGAATATACCATTC
118648538 TATTTGACATTTGATATGAAATACCAATATTGAATGATGTATATTGTATGTAATTGTTAAAGTAA
131 TATTTGACATTTGATATGAAATACCAATATTGAATGATGTATATTGTATGTAATTGTTAAAGTAA
118648603 TAAAAGATGACATGTGAAAGATCATGCAAACTGGTTAAAGCAAGCTCTCAAGGC
196 TAAAAGATGACATGTGAAAGATCATGCAAACTGGTTAAAGCAAGCTCTCAAGGC
118648657 TGATATGAAT
Statistics
Matches: 246, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
276 246 1.00
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (276 bp):
GTGCAATTTATACTTCGGGCATATCGATAAGGCATTGGTTTTCAGATATATTGGTGTAATGGTTG
GATGATTCGTGTATCTGTCTTGAGTTCGTGTCCGATTAATAGGGATTATGAAGAATATACCATTC
TATTTGACATTTGATATGAAATACCAATATTGAATGATGTATATTGTATGTAATTGTTAAAGTAA
TAAAAGATGACATGTGAAAGATCATGCAAACTGGTTAAAGCAAGCTCTCAAGGCATTGGTTTTCA
GATATACTTCGGGCAT
Found at i:118649775 original size:19 final size:19
Alignment explanation
Indices: 118649723--118649794 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
118649713 AATCATATCT
118649723 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
118649741 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
118649758 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
118649777 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
118649795 TGAAGATTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
17 16 0.31
18 10 0.20
19 25 0.49
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:118649801 original size:36 final size:35
Alignment explanation
Indices: 118649726--118649802 Score: 104
Period size: 36 Copynumber: 2.2 Consensus size: 35
118649716 CATATCTTCT
*
118649726 AAGATTGCAATCATATCTAAGATTGTATCATATCT
1 AAGATTGCAATCATATCTAAGATTGTATCATATCG
118649761 AAGATTGCATATCATATCTAAGATTGCATATCAT-T-G
1 AAGATTGCA-ATCATATCTAAGATTG--TATCATATCG
118649797 AAGATT
1 AAGATT
118649803 ATATTTCCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
35 9 0.24
36 22 0.58
37 1 0.03
38 6 0.16
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (35 bp):
AAGATTGCAATCATATCTAAGATTGTATCATATCG
Found at i:118649802 original size:17 final size:19
Alignment explanation
Indices: 118649726--118649802 Score: 92
Period size: 19 Copynumber: 4.3 Consensus size: 19
118649716 CATATCTTCT
*
118649726 AAGATTGCA-ATCATATCT
1 AAGATTGCATATCATATCG
*
118649744 AAGATTG--TATCATATCT
1 AAGATTGCATATCATATCG
*
118649761 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
118649780 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
118649797 AAGATT
1 AAGATT
118649803 ATATTTCCAT
Statistics
Matches: 55, Mismatches: 1, Indels: 7
0.87 0.02 0.11
Matches are distributed among these distances:
17 22 0.40
18 8 0.15
19 25 0.45
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:118650263 original size:44 final size:45
Alignment explanation
Indices: 118650164--118650421 Score: 238
Period size: 45 Copynumber: 5.7 Consensus size: 45
118650154 ATCTTTGATA
*
118650164 TGCTCCCCGTCTAATTACAGAGACGCCAAATCTGTTATCTTCGATC
1 TGCTCCCCGTCTAA-TACAGAGACGCCAAATCTGTTATCTTCAATC
118650210 TGCTCCCCGTCTAATACAGAGACGCCAAATCT-TCT-TCTTCAATC
1 TGCTCCCCGTCTAATACAGAGACGCCAAATCTGT-TATCTTCAATC
* * *
118650254 TGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCAATT
1 TGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCAATC
* * * * * **
118650299 TGCTCCCCGTTTAATATAAAGATGCCAAATCTGTCATCTTGGATC
1 TGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCAATC
* * * * * * **
118650344 TGCT--TCGATGTAA-ACACATGAAGGTCAGATCTGCTATATCTTGGATC
1 TGCTCCCCG-TCTAATACAGA-G-ACGCCAAATCTG-T-TATCTTCAATC
*
118650391 TGCTCCCCGTCTAATACAGAGATGCCAAATC
1 TGCTCCCCGTCTAATACAGAGACGCCAAATC
118650422 ATCTTGGATC
Statistics
Matches: 175, Mismatches: 26, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
43 5 0.03
44 46 0.26
45 77 0.44
46 15 0.09
47 21 0.12
48 5 0.03
49 6 0.03
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (45 bp):
TGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCAATC
Found at i:118650290 original size:89 final size:89
Alignment explanation
Indices: 118650164--118650426 Score: 271
Period size: 89 Copynumber: 2.9 Consensus size: 89
118650154 ATCTTTGATA
118650164 TGCTCCCCGTCTAATTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAG
1 TGCTCCCCGTCTAA-TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAG
*
118650229 AGACGCCAAATCTTCTTCTTCAATC
65 AGATGCCAAATCTTCTTCTTCAATC
* * * * * * *
118650254 TGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCAATTTGCTCCCCGTTTAATATAAA
1 TGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGA
* **
118650319 GATGCCAAATCTGTCATCTTGGATC
66 GATGCCAAATCT-TCTTCTTCAATC
* * * * * * *
118650344 TGCT--TCGATGTAA-ACACATGAAGGTCAGATCTGCTATATCTTGGATCTGCTCCCCGTCTAAT
1 TGCTCCCCG-TCTAATACAGA-G-ACGCCAAATCTG-T-TATCTTCGATCTGCTCCCCGTCTAAT
*
118650406 ACAGAGATGCCAAATCATCTT
61 ACAGAGATGCCAAATCTTCTT
118650427 GGATCTTCTT
Statistics
Matches: 141, Mismatches: 26, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
88 6 0.04
89 60 0.43
90 36 0.26
91 4 0.03
92 35 0.25
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (89 bp):
TGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGA
GATGCCAAATCTTCTTCTTCAATC
Found at i:118650490 original size:78 final size:78
Alignment explanation
Indices: 118650361--118650655 Score: 457
Period size: 78 Copynumber: 3.8 Consensus size: 78
118650351 ATGTAAACAC
* **
118650361 ATGAAGGTCAGATCTGCTATATCTTGGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
118650426 TGGATCTTCTTCA
66 TGGATCTGCTTCA
* *
118650439 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
118650503 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * *
118650517 ATGATGGTCAGATCTGCTGTGTCTTCAATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
118650582 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * **
118650595 ATGAAGGTCAGATCTGCTATGTCTTCAATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
118650656 TGTTTCTTCG
Statistics
Matches: 199, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
77 2 0.01
78 195 0.98
79 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:118659250 original size:22 final size:21
Alignment explanation
Indices: 118659215--118659290 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
118659205 AAAAGGTATC
* *
118659215 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
118659236 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
118659259 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
118659278 TGC-AATCATATCT
1 TACAAATCATATCT
118659291 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:118659275 original size:19 final size:19
Alignment explanation
Indices: 118659251--118659341 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
118659241 AATCATATCT
118659251 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
118659270 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
118659288 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
118659305 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
118659324 TCTAAAATTGCATATCAT
1 TCTAAGATTGCATATCAT
118659342 TGAATATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:118659307 original size:35 final size:37
Alignment explanation
Indices: 118659244--118659341 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 37
118659234 ATTACAAAAT
118659244 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
118659280 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
*
118659315 CATATCATATCTAAAATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
118659342 TGAATATTAT
Statistics
Matches: 56, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
35 22 0.39
36 18 0.32
37 10 0.18
38 6 0.11
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:118659320 original size:14 final size:15
Alignment explanation
Indices: 118659265--118659320 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
118659255 AGATTGCATA
118659265 TCATATCTAAGATTG
1 TCATATCTAAGATTG
118659280 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
118659298 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
118659315 -CATATC
1 TCATATC
118659321 ATATCTAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:118659496 original size:19 final size:20
Alignment explanation
Indices: 118659460--118659497 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
118659450 TTGGACTTCG
**
118659460 TTTTTTTTTGGGGTTTATTA
1 TTTTTTTTTGGGACTTATTA
118659480 TTTTTTTTT-GGACTTATT
1 TTTTTTTTTGGGACTTATT
118659498 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.11, C:0.03, G:0.16, T:0.71
Consensus pattern (20 bp):
TTTTTTTTTGGGACTTATTA
Found at i:118664427 original size:24 final size:24
Alignment explanation
Indices: 118664395--118664466 Score: 98
Period size: 24 Copynumber: 3.2 Consensus size: 24
118664385 ATAACATAAC
118664395 TAAATAACTCATTATATATATATT
1 TAAATAACTCATTATATATATATT
*
118664419 TAAATAACTCATTATATATATATA
1 TAAATAACTCATTATATATATATT
*
118664443 TATAT-A-T-A-TATATATATATT
1 TAAATAACTCATTATATATATATT
118664463 TAAA
1 TAAA
118664467 CATCATGATG
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
20 14 0.32
21 1 0.02
22 1 0.02
23 1 0.02
24 27 0.61
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (24 bp):
TAAATAACTCATTATATATATATT
Found at i:118664436 original size:2 final size:2
Alignment explanation
Indices: 118664431--118664461 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
118664421 AATAACTCAT
118664431 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
118664462 TTAAACATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:118666686 original size:2 final size:2
Alignment explanation
Indices: 118666679--118666706 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
118666669 ATATCTAAGC
118666679 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
118666707 AAAGTATCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:118667421 original size:43 final size:43
Alignment explanation
Indices: 118667360--118667462 Score: 154
Period size: 43 Copynumber: 2.4 Consensus size: 43
118667350 CATACTGAAG
* *
118667360 CAATTATATTGGCACACACAGTGCATCATCTGACAAGCCGAAA
1 CAATTATATTGGCACACACAGTACATCATCAGACAAGCCGAAA
* *
118667403 CAATTAT-TCTGGCACACACAGTACATCATCAGACAAGCTGAAG
1 CAATTATAT-TGGCACACACAGTACATCATCAGACAAGCCGAAA
118667446 CAATTATATTGGCACAC
1 CAATTATATTGGCACAC
118667463 GGTGCATCAT
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
42 1 0.02
43 52 0.96
44 1 0.02
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.22
Consensus pattern (43 bp):
CAATTATATTGGCACACACAGTACATCATCAGACAAGCCGAAA
Found at i:118667967 original size:17 final size:18
Alignment explanation
Indices: 118667927--118667968 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
118667917 CAAATTAATA
118667927 ATTAA-TTTTCATTTTAT
1 ATTAATTTTTCATTTTAT
* *
118667944 ATAAATTTTTCATTTTGT
1 ATTAATTTTTCATTTTAT
118667962 -TTAATTT
1 ATTAATTT
118667969 AGTCCCTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (18 bp):
ATTAATTTTTCATTTTAT
Found at i:118676845 original size:6 final size:6
Alignment explanation
Indices: 118676834--118676861 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
118676824 GGAGAATATT
118676834 TATACA TATACA TATACA TATACA TATA
1 TATACA TATACA TATACA TATACA TATA
118676862 TATACACGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (6 bp):
TATACA
Found at i:118679046 original size:199 final size:202
Alignment explanation
Indices: 118678588--118679053 Score: 602
Period size: 199 Copynumber: 2.3 Consensus size: 202
118678578 TTCCACATGC
* * * * *
118678588 ATACTCGTGTGATAGGATTTTTAGTATTAATAATGTATTTGATTGAGATGATGTCGCAAGTTAAT
1 ATACGCGTGTGATAGGA-TTTTAGTATTAATAATGTATTTGATTGAGTTGGTGTCACAAGTTAAA
*
118678653 CTATTTTTCATTTTAATTTCGTGCATATTGCATATGTGGTATTGTTATTATTATTATTAGTTTCA
65 CTATTTTTCATTTTAATTTCGTACATATTGCATATGTGG-ATTG-T-TTATTATTATTAGTTTCA
* * * *
118678718 AATCTTACGTCCCATTATTTATTTTATGTTATTTTTAAACATACATTTTTATTCAAAATTTATGG
127 AACCTTACGTCCCATTATTTATTATATGTTATTTTTAAACACACATTTTTATTCAAAATTTATAG
118678783 TTTCAACACGA
192 TTTCAACACGA
* *
118678794 ATACGTGTATGATAGGATTATTAGTATTAATAATGTATTTGATTGAGTTGGTGTCACAAGTTAAA
1 ATACGCGTGTGATAGGATT-TTAGTATTAATAATGTATTTGATTGAGTTGGTGTCACAAGTTAAA
* * *
118678859 CTATTTTTTATTTTAATTTCGTACGTATTGCATATGT-G-TTG-TTATTATTATTAGTTTCATAC
65 CTATTTTTCATTTTAATTTCGTACATATTGCATATGTGGATTGTTTATTATTATTAGTTTCAAAC
* ** *
118678921 CTTATGTTTCATTATTTATTATATGTTA-TTTTAAACACACATTTTTATTCAAAATTTGTAGTTT
130 CTTACGTCCCATTATTTATTATATGTTATTTTTAAACACACATTTTTATTCAAAATTTATAGTTT
*
118678985 CCACAC-A
195 CAACACGA
* * * *
118678992 CATATGCGTGTGATAGAATTTCTAGTATTAATAATGT-TGTTAATTAAGTTGGTGTCACAAGT
1 -ATACGCGTGTGATAGGATTT-TAGTATTAATAATGTAT-TTGATTGAGTTGGTGTCACAAGT
118679054 CAACTCGATA
Statistics
Matches: 230, Mismatches: 26, Indels: 15
0.85 0.10 0.06
Matches are distributed among these distances:
198 3 0.01
199 89 0.39
200 43 0.19
203 3 0.01
205 3 0.01
206 89 0.39
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (202 bp):
ATACGCGTGTGATAGGATTTTAGTATTAATAATGTATTTGATTGAGTTGGTGTCACAAGTTAAAC
TATTTTTCATTTTAATTTCGTACATATTGCATATGTGGATTGTTTATTATTATTAGTTTCAAACC
TTACGTCCCATTATTTATTATATGTTATTTTTAAACACACATTTTTATTCAAAATTTATAGTTTC
AACACGA
Found at i:118695449 original size:40 final size:40
Alignment explanation
Indices: 118695385--118695479 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 40
118695375 ATCTTGGTAT
*
118695385 CGCACACTTAGTGCCACATATAGCCGAAGCTA-TTCCAACA
1 CGCACACTTAGTGCCACATATAGCCAAAGCTATTTCCAA-A
* ** * * * *
118695425 CGCACACTTAGTGTCATTTGTAGCCAAAGTTATTTCGAAT
1 CGCACACTTAGTGCCACATATAGCCAAAGCTATTTCCAAA
118695465 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
118695480 GAACATAATC
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
40 40 0.89
41 5 0.11
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (40 bp):
CGCACACTTAGTGCCACATATAGCCAAAGCTATTTCCAAA
Found at i:118696019 original size:22 final size:19
Alignment explanation
Indices: 118695994--118696045 Score: 50
Period size: 22 Copynumber: 2.5 Consensus size: 19
118695984 CATAACAAAA
118695994 CTCATGAATTCATCAATGGAAT
1 CTCATGAATT-ATCAAT--AAT
*
118696016 CTCATCAAATTATCAATAAT
1 CTCAT-GAATTATCAATAAT
*
118696036 TTCATGAATT
1 CTCATGAATT
118696046 TAAGCATGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 4 0.15
20 7 0.27
22 11 0.42
23 4 0.15
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (19 bp):
CTCATGAATTATCAATAAT
Found at i:118698329 original size:25 final size:25
Alignment explanation
Indices: 118698300--118698351 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
118698290 TTTGGCTTGA
* *
118698300 CATTTACTAAGCAATATTAGATATT
1 CATTTACTAAGCAATATCAAATATT
* *
118698325 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGCAATATCAAATATT
118698350 CA
1 CA
118698352 AATTATTCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.38
Consensus pattern (25 bp):
CATTTACTAAGCAATATCAAATATT
Found at i:118698478 original size:13 final size:13
Alignment explanation
Indices: 118698460--118698489 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
118698450 TGATCAATTG
118698460 CATAAGTTACTCA
1 CATAAGTTACTCA
118698473 CATAAGTTACTCA
1 CATAAGTTACTCA
118698486 CATA
1 CATA
118698490 TTTTCCTCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (13 bp):
CATAAGTTACTCA
Found at i:118702240 original size:11 final size:11
Alignment explanation
Indices: 118702224--118702248 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
118702214 ATCTCATATC
118702224 TCAATTTCAAT
1 TCAATTTCAAT
118702235 TCAATTTCAAT
1 TCAATTTCAAT
118702246 TCA
1 TCA
118702249 TAATTCCACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.20, G:0.00, T:0.44
Consensus pattern (11 bp):
TCAATTTCAAT
Found at i:118702473 original size:23 final size:23
Alignment explanation
Indices: 118702420--118702481 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
118702410 ACCTGATCAG
* *
118702420 TATACGACACAT-AAGTGTCTGA
1 TATACGACACATAAAGTGCCTAA
118702442 -A-ACGACACATAAAGTGCCTAA
1 TATACGACACATAAAGTGCCTAA
118702463 TATACGACACATAAAGTGC
1 TATACGACACATAAAGTGC
118702482 TTGATCGACA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 9 0.26
21 9 0.26
22 1 0.03
23 16 0.46
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (23 bp):
TATACGACACATAAAGTGCCTAA
Found at i:118702939 original size:40 final size:40
Alignment explanation
Indices: 118702859--118702945 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 40
118702849 AATTCATTAC
* * * *
118702859 TTCAGTAATTTCACAGTTCAATGCAGTATACATAATAATA
1 TTCAGTAACTTCACAATTCAATGCAGTATACAAAACAATA
**
118702899 TTCAGTAACTTCACAATTCAATTTAGTACT-CAAAACAATA
1 TTCAGTAACTTCACAATTCAATGCAGTA-TACAAAACAATA
118702939 TTCAGTA
1 TTCAGTA
118702946 TTCTATAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
40 39 0.98
41 1 0.03
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.34
Consensus pattern (40 bp):
TTCAGTAACTTCACAATTCAATGCAGTATACAAAACAATA
Found at i:118703830 original size:16 final size:16
Alignment explanation
Indices: 118703800--118703841 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
118703790 AAATATTATG
118703800 AATTAA-TTT-TAATT
1 AATTAATTTTCTAATT
118703814 AATTAATTTTCTAATT
1 AATTAATTTTCTAATT
*
118703830 AAATAATTTTCT
1 AATTAATTTTCT
118703842 CAGCCCGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 6 0.24
15 3 0.12
16 16 0.64
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (16 bp):
AATTAATTTTCTAATT
Found at i:118708943 original size:27 final size:27
Alignment explanation
Indices: 118708868--118708943 Score: 66
Period size: 27 Copynumber: 2.8 Consensus size: 27
118708858 TGATATGGAA
* *
118708868 AACTCTGAAATGAATAACCTTTGTGGC
1 AACTCTGAAATGAATAGCCTTTATGGC
* * *
118708895 ACACTCTGTAA-GAATTGTCTTTATGGC
1 A-ACTCTGAAATGAATAGCCTTTATGGC
*
118708922 GAACTCTG-AATGAATGGCCTTT
1 -AACTCTGAAATGAATAGCCTTT
118708944 GAGGAGTATT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
26 2 0.05
27 28 0.72
28 9 0.23
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (27 bp):
AACTCTGAAATGAATAGCCTTTATGGC
Found at i:118712347 original size:37 final size:38
Alignment explanation
Indices: 118712288--118712372 Score: 129
Period size: 37 Copynumber: 2.3 Consensus size: 38
118712278 CTCCCTGTTT
* * *
118712288 TGGCGTGTTT-TTGGTTGGACTAGCTCTTATGAGCATC
1 TGGCGTGTTTCCTGGTTGAACTAGCTCTTATAAGCATC
118712325 TGGCGTGTTTCCT-GTTGAACTAGCTCTTATAAGCATC
1 TGGCGTGTTTCCTGGTTGAACTAGCTCTTATAAGCATC
118712362 TGGCGTGTTTC
1 TGGCGTGTTTC
118712373 GGGTGGAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
37 43 0.98
38 1 0.02
ACGTcount: A:0.14, C:0.19, G:0.27, T:0.40
Consensus pattern (38 bp):
TGGCGTGTTTCCTGGTTGAACTAGCTCTTATAAGCATC
Found at i:118715125 original size:48 final size:48
Alignment explanation
Indices: 118715052--118715276 Score: 219
Period size: 48 Copynumber: 4.8 Consensus size: 48
118715042 CATGGTAGGG
* * * *
118715052 TGCCAATGCCATATCTCGGATATGGTCTTACATGGGATCACATATCAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAA
* ** * **
118715100 TTCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTAGATTGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAA
*
118715148 TGCCAATGCCATGTCCCCGACATGGTCTTACATGGGATCACATATCAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAA
* * * ** * *
118715196 TGCCGAT---A-G-CCCA-ACTATGGTCTTATACGAAATTACATATCGA
1 TGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATCAA
* *
118715239 TTCCAATGCCATGTCCCAGACATGGTCTTATATGGGAT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
118715277 TGCACATAAC
Statistics
Matches: 140, Mismatches: 30, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
42 2 0.01
43 29 0.21
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 103 0.74
49 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAA
Found at i:118719468 original size:26 final size:22
Alignment explanation
Indices: 118719442--118719487 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
118719432 AATTGGCACA
118719442 TACATACACAAAATGAATCAAC
1 TACATACACAAAATGAATCAAC
118719464 TACATACACAAAATGAATCAAC
1 TACATACACAAAATGAATCAAC
118719486 TA
1 TA
118719488 TCTCTATAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.54, C:0.22, G:0.04, T:0.20
Consensus pattern (22 bp):
TACATACACAAAATGAATCAAC
Found at i:118720129 original size:48 final size:48
Alignment explanation
Indices: 118720058--118720244 Score: 329
Period size: 48 Copynumber: 3.9 Consensus size: 48
118720048 AGGGTAAAAT
118720058 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
*
118720106 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
* *
118720154 GCCGATGCCATGTCCTAGAGATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
* *
118720202 ACCGATGCCATGTCCCAGACATGGTATTACACTGGCTCTCATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA
118720245 TCACCCAGAT
Statistics
Matches: 133, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 133 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
Found at i:118724236 original size:49 final size:49
Alignment explanation
Indices: 118724181--118724364 Score: 314
Period size: 49 Copynumber: 3.8 Consensus size: 49
118724171 TACTAAAATT
* * * *
118724181 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGAGATGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
*
118724230 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
*
118724279 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
118724328 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
118724365 TAATGTAAAA
Statistics
Matches: 129, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 129 1.00
ACGTcount: A:0.29, C:0.08, G:0.32, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
Found at i:118724516 original size:37 final size:37
Alignment explanation
Indices: 118724466--118724624 Score: 291
Period size: 37 Copynumber: 4.3 Consensus size: 37
118724456 GGAATATGTT
*
118724466 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
118724503 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
118724540 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
* *
118724577 CCGGGTAAGACCCGATGACTATGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
118724614 CCGGGTAAGAC
1 CCGGGTAAGAC
118724625 TTCTTTTATA
Statistics
Matches: 119, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 119 1.00
ACGTcount: A:0.26, C:0.19, G:0.33, T:0.22
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:118726735 original size:29 final size:29
Alignment explanation
Indices: 118726703--118726805 Score: 188
Period size: 29 Copynumber: 3.6 Consensus size: 29
118726693 CGTTAACCGA
118726703 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
118726732 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
118726761 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
118726790 GCACTGTGTGTGCGAG
1 GCACTATGTGTGCGAG
118726806 TTTTTCAACA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCAGTAATCGAG
Found at i:118726742 original size:58 final size:58
Alignment explanation
Indices: 118726671--118726804 Score: 182
Period size: 58 Copynumber: 2.3 Consensus size: 58
118726661 CGAATGATTA
* *
118726671 GAGGCATTGTGTGTGC-AAATTCCGTTAACCGA-GCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAAA-TCAG-TAACCGAGGCACTATGTGTGCGAGATCAGTAATC
* * * *
118726729 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATC
118726787 GAGGCACTGTGTGTGCGA
1 GAGGCACTGTGTGTGCGA
118726805 GTTTTTCAAC
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
57 6 0.09
58 59 0.88
59 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.26
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:118730312 original size:49 final size:49
Alignment explanation
Indices: 118730256--118730488 Score: 403
Period size: 49 Copynumber: 4.8 Consensus size: 49
118730246 TACTAAAATT
*
118730256 TGTGAAAGTGTATTTATATGTGATAAGGCCTAATGGCCGATGAGATGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGAGATGAA
118730305 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGAGATGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGAGATGAA
* * *
118730354 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGAGATGAA
* * *
118730403 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGAGATGAA
118730452 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
118730489 TAATGTAAAA
Statistics
Matches: 179, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 179 1.00
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (49 bp):
TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGAGATGAA
Found at i:118730640 original size:37 final size:37
Alignment explanation
Indices: 118730590--118730748 Score: 291
Period size: 37 Copynumber: 4.3 Consensus size: 37
118730580 GGAATATGTT
*
118730590 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
118730627 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
118730664 CCGGGTAAGACCCGATGACTACGTATGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
118730701 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
118730738 CCGGGTAAGAC
1 CCGGGTAAGAC
118730749 TTCTTTTATA
Statistics
Matches: 118, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 118 1.00
ACGTcount: A:0.26, C:0.19, G:0.33, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:118734411 original size:20 final size:20
Alignment explanation
Indices: 118734386--118734423 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
118734376 GTTTATTCGC
*
118734386 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
118734406 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
118734424 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:118736082 original size:28 final size:28
Alignment explanation
Indices: 118736050--118736104 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
118736040 CGTAGATCAC
118736050 GAAATTACCCCTAAAGAGCAAAATTACT
1 GAAATTACCCCTAAAGAGCAAAATTACT
118736078 GAAATTACCCCTAAAGAGCAAAATTAC
1 GAAATTACCCCTAAAGAGCAAAATTAC
118736105 CAATATACCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.47, C:0.22, G:0.11, T:0.20
Consensus pattern (28 bp):
GAAATTACCCCTAAAGAGCAAAATTACT
Found at i:118740897 original size:25 final size:26
Alignment explanation
Indices: 118740842--118740897 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
118740832 AATACAAATC
* * *
118740842 ACTAATTAACATGTATATGTTCAATA
1 ACTAATTAAAATATATATGATCAATA
*
118740868 A-TAATTAAAATATATAT-ATCATTA
1 ACTAATTAAAATATATATGATCAATA
118740892 ACTAAT
1 ACTAAT
118740898 CATTCATACA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 6 0.24
25 18 0.72
26 1 0.04
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.39
Consensus pattern (26 bp):
ACTAATTAAAATATATATGATCAATA
Found at i:118742621 original size:3 final size:3
Alignment explanation
Indices: 118742613--118742646 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
118742603 TAAGGTTTTT
118742613 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
118742647 ATAAATAGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:118751667 original size:39 final size:39
Alignment explanation
Indices: 118751613--118751687 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
118751603 GCCTTCCAGG
118751613 GAAAGTATGTGGGTGAGAGCTATGTAGATACTTTTAAGT
1 GAAAGTATGTGGGTGAGAGCTATGTAGATACTTTTAAGT
118751652 GAAAGTATGTGGGTGAGAGCTATGTAGATACTTTTA
1 GAAAGTATGTGGGTGAGAGCTATGTAGATACTTTTA
118751688 GGTGTGAGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (39 bp):
GAAAGTATGTGGGTGAGAGCTATGTAGATACTTTTAAGT
Found at i:118759687 original size:13 final size:13
Alignment explanation
Indices: 118759669--118759693 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
118759659 TAGTTGATAC
118759669 ATAAAGAACACTA
1 ATAAAGAACACTA
118759682 ATAAAGAACACT
1 ATAAAGAACACT
118759694 GGAAAGTAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (13 bp):
ATAAAGAACACTA
Found at i:118779190 original size:16 final size:17
Alignment explanation
Indices: 118779163--118779202 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
118779153 GAAACTAAAT
* *
118779163 AACTAAAGTAAATAAAC
1 AACTAAAATAAACAAAC
118779180 AA-TAAAATAAACAAAC
1 AACTAAAATAAACAAAC
118779196 AACTAAA
1 AACTAAA
118779203 CGAATTAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.70, C:0.12, G:0.03, T:0.15
Consensus pattern (17 bp):
AACTAAAATAAACAAAC
Done.