Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 380 of 433
Found at i:118782192 original size:21 final size:21
Alignment explanation
Indices: 118782146--118782194 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
118782136 GGGTCGAGCT
* * *
118782146 CGAGCTTGAACATTCAATGTC
1 CGAGCTCGAACATTCAAGGCC
*
118782167 TGAGCTCGAACATTCAAGGCC
1 CGAGCTCGAACATTCAAGGCC
118782188 CGAGCTC
1 CGAGCTC
118782195 ATTTTTTAAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (21 bp):
CGAGCTCGAACATTCAAGGCC
Found at i:118783870 original size:18 final size:18
Alignment explanation
Indices: 118783847--118783884 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
118783837 TTATAGTTTG
*
118783847 TTATTCAATTTATTCGAA
1 TTATTCAAGTTATTCGAA
*
118783865 TTATTCGAGTTATTCGAA
1 TTATTCAAGTTATTCGAA
118783883 TT
1 TT
118783885 CAAAAATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.50
Consensus pattern (18 bp):
TTATTCAAGTTATTCGAA
Found at i:118787622 original size:43 final size:43
Alignment explanation
Indices: 118787532--118787625 Score: 102
Period size: 43 Copynumber: 2.2 Consensus size: 43
118787522 TGTGATTATG
* *** *
118787532 TGTAAGACCATGTCTAGGACATTGGCATCATTATTCGATTTCG
1 TGTAAGACCATGTCTAGGACAGTGGCATCATTATTCGACGACA
*
118787575 TGTAAGACCCTGTCTAGGACAGTGGCATCGA-TATGT-GACGACA
1 TGTAAGACCATGTCTAGGACAGTGGCATC-ATTAT-TCGACGACA
118787618 TGTAAGAC
1 TGTAAGAC
118787626 TATATCTGGG
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
43 41 0.95
44 2 0.05
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACAGTGGCATCATTATTCGACGACA
Found at i:118790343 original size:29 final size:29
Alignment explanation
Indices: 118790301--118790357 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
118790291 TCTAATGTTG
118790301 TTACCATTTGATGAATTTGATATAATTCA
1 TTACCATTTGATGAATTTGATATAATTCA
118790330 TTACCATTTGATGAATTTGATATAATTC
1 TTACCATTTGATGAATTTGATATAATTC
118790358 TGGGTATGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.46
Consensus pattern (29 bp):
TTACCATTTGATGAATTTGATATAATTCA
Found at i:118794640 original size:47 final size:47
Alignment explanation
Indices: 118794583--118794703 Score: 215
Period size: 47 Copynumber: 2.6 Consensus size: 47
118794573 CATTGGCACT
118794583 AAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGAATTTGGA
1 AAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGAATTTGGA
*
118794630 AAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGAATTTGGT
1 AAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGAATTTGGA
* *
118794677 AAGATAAGGATATCATGTAAGACCATG
1 AAGACAAGGATACCATGTAAGACCATG
118794704 CCAAGGCATG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.24
Consensus pattern (47 bp):
AAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGAATTTGGA
Found at i:118794746 original size:54 final size:54
Alignment explanation
Indices: 118794682--118794890 Score: 251
Period size: 54 Copynumber: 3.9 Consensus size: 54
118794672 TTGGTAAGAT
*
118794682 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
118794736 AAGGAAATCATGTAAGACCATGTCAAGACATAGCATTGATGAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
** * * *
118794791 AAAGG-TCCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGAT-ATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
118794845 AAGGATATCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
118794891 AAAAAGGAAA
Statistics
Matches: 132, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
53 37 0.28
54 48 0.36
55 10 0.08
56 37 0.28
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:118795310 original size:22 final size:22
Alignment explanation
Indices: 118795285--118795352 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
118795275 TGCTTATTAT
118795285 TTTACATGTGAACTTACTAAGC
1 TTTACATGTGAACTTACTAAGC
* * * *
118795307 TTTATAAGCTCG--CTTA-TTA-T
1 TTTACATG-T-GAACTTACTAAGC
118795327 TTTACATGTGAACTTACTAAGC
1 TTTACATGTGAACTTACTAAGC
118795349 TTTA
1 TTTA
118795353 TAAGCTTACT
Statistics
Matches: 32, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 10 0.31
21 4 0.12
22 14 0.44
23 1 0.03
24 1 0.03
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (22 bp):
TTTACATGTGAACTTACTAAGC
Found at i:118795323 original size:42 final size:42
Alignment explanation
Indices: 118795276--118795358 Score: 166
Period size: 42 Copynumber: 2.0 Consensus size: 42
118795266 GATTGCTAAT
118795276 GCTTATTATTTTACATGTGAACTTACTAAGCTTTATAAGCTC
1 GCTTATTATTTTACATGTGAACTTACTAAGCTTTATAAGCTC
118795318 GCTTATTATTTTACATGTGAACTTACTAAGCTTTATAAGCT
1 GCTTATTATTTTACATGTGAACTTACTAAGCTTTATAAGCT
118795359 TACTTCTTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (42 bp):
GCTTATTATTTTACATGTGAACTTACTAAGCTTTATAAGCTC
Found at i:118798256 original size:43 final size:44
Alignment explanation
Indices: 118798208--118798356 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 44
118798198 GTTACTGAGA
118798208 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT-TGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCTGTAT
* * *
118798251 TGTGATTACGTGTAAGACCATGCCTGGGACATT-ACATCAT-TAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATC-TGTAT
* * * * * * *
118798294 T-CGATTTCGTGTAAGACCCTGTCTAGGACAGTGGCATCGGTA-
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCTGTAT
* *
118798336 TATGATGACATGTAAGACCAT
1 TGTGATTACATGTAAGACCAT
118798357 ATATGGGATA
Statistics
Matches: 85, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
42 29 0.34
43 55 0.65
44 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (44 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCTGTAT
Found at i:118805299 original size:22 final size:22
Alignment explanation
Indices: 118805255--118805299 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
118805245 ACCAAGAGTC
* *
118805255 AAAAGGAGACAAAAACGAGCAA
1 AAAAAGAGACAAAAACGACCAA
118805277 AAAAAGAGAC-AAAACAGACCAA
1 AAAAAGAGACAAAAAC-GACCAA
118805299 A
1 A
118805300 TTGAGAAGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.67, C:0.16, G:0.18, T:0.00
Consensus pattern (22 bp):
AAAAAGAGACAAAAACGACCAA
Found at i:118806323 original size:13 final size:13
Alignment explanation
Indices: 118806305--118806333 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
118806295 TTTAGTTTAA
118806305 TTAGTTAATTAGT
1 TTAGTTAATTAGT
118806318 TTAGTTAATTAGT
1 TTAGTTAATTAGT
118806331 TTA
1 TTA
118806334 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:118809421 original size:40 final size:40
Alignment explanation
Indices: 118809376--118809542 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
118809366 CGGAATATAA
118809376 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
118809416 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
118809456 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
118809496 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
118809535 CCGGATAT
1 CCGGATAT
118809543 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:118817386 original size:40 final size:40
Alignment explanation
Indices: 118817341--118817507 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
118817331 CGGAATATAA
118817341 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
118817381 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
118817421 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
118817461 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
118817500 CCGGATAT
1 CCGGATAT
118817508 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:118822504 original size:40 final size:40
Alignment explanation
Indices: 118822459--118822624 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
118822449 CGGAATATAA
118822459 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
118822499 CCGGATAGAAT-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
118822538 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
118822578 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
118822617 CCGGATAT
1 CCGGATAT
118822625 CATTCAATTT
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
38 1 0.01
39 46 0.43
40 60 0.56
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:118822523 original size:39 final size:39
Alignment explanation
Indices: 118822475--118822584 Score: 141
Period size: 39 Copynumber: 2.8 Consensus size: 39
118822465 ATAATCACGT
* *
118822475 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGA-ATACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
* *
118822514 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
*
118822554 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
118822585 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 33 0.52
40 30 0.48
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
Found at i:118830494 original size:40 final size:40
Alignment explanation
Indices: 118830449--118830615 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
118830439 CGGAATATAA
118830449 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
118830489 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
118830529 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
118830569 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
118830608 CCGGATAT
1 CCGGATAT
118830616 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:118839616 original size:79 final size:81
Alignment explanation
Indices: 118839515--118839699 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
118839505 ACGACTCGCT
** * *
118839515 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
118839578 GGGTTTAATAACTT-GCA
64 GGATATAATAACTTAGCA
* **
118839595 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
* *
118839659 ATATAGTCACTTAGCA
66 ATATAATAACTTAGCA
118839675 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
118839700 CATCATTCGA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAATAACTTAGCA
Found at i:118839699 original size:40 final size:39
Alignment explanation
Indices: 118839482--118839699 Score: 154
Period size: 40 Copynumber: 5.5 Consensus size: 39
118839472 GAATCACGTA
* * *** *
118839482 CCTTCGGAACTTA-ACCGGATATAACGACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA-G
** * * *
118839521 CCTTCGGGACGAAGCCCGGTTATAGTGACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC-AAAG
* * * * *
118839561 CCTTCGGGACTTAACCCGGGTTTAATAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA-G
* * *
118839601 CCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC-AAAG
* * * *
118839640 CCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCACAAAG
1 CCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCACAAAG
118839680 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
118839700 CATCATTCGA
Statistics
Matches: 139, Mismatches: 32, Indels: 15
0.75 0.17 0.08
Matches are distributed among these distances:
38 2 0.01
39 40 0.29
40 87 0.63
41 10 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAAG
Found at i:118849154 original size:20 final size:20
Alignment explanation
Indices: 118849126--118849176 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
118849116 TCGCTTCTCC
*
118849126 CACGTCCGTGTATACAGGCG
1 CACGCCCGTGTATACAGGCG
**
118849146 CACGCCCGTGTATGTAGGCG
1 CACGCCCGTGTATACAGGCG
118849166 CACGCCCGTGT
1 CACGCCCGTGT
118849177 TAAATTGACA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.16, C:0.33, G:0.31, T:0.20
Consensus pattern (20 bp):
CACGCCCGTGTATACAGGCG
Found at i:118853931 original size:6 final size:6
Alignment explanation
Indices: 118853917--118853980 Score: 57
Period size: 6 Copynumber: 11.5 Consensus size: 6
118853907 AAGAAATTTG
* * *
118853917 AAATAA AAATTA AAAGAA AAATAA GAAT-A AAAT-- AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
*
118853962 GAAT-- AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAA
118853981 ATAGGAGGAT
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
4 7 0.15
5 4 0.09
6 35 0.76
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:118853959 original size:21 final size:22
Alignment explanation
Indices: 118853923--118853980 Score: 82
Period size: 21 Copynumber: 2.7 Consensus size: 22
118853913 TTTGAAATAA
* *
118853923 AAATTAAAAGAAAAATAAGAAT
1 AAATAAAAATAAAAATAAGAAT
*
118853945 AAA-ATAAATAAAAATAAGAAT
1 AAATAAAAATAAAAATAAGAAT
118853966 AAATAAAAATAAAAA
1 AAATAAAAATAAAAA
118853981 ATAGGAGGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 18 0.58
22 13 0.42
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (22 bp):
AAATAAAAATAAAAATAAGAAT
Found at i:118853968 original size:16 final size:16
Alignment explanation
Indices: 118853930--118853977 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
118853920 TAAAAATTAA
*
118853930 AAGAA-AAATAAGAAT
1 AAGAATAAATAAAAAT
118853945 AA-AATAAATAAAAAT
1 AAGAATAAATAAAAAT
118853960 AAGAATAAATAAAAAT
1 AAGAATAAATAAAAAT
118853976 AA
1 AA
118853978 AAAATAGGAG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 2 0.07
15 13 0.43
16 15 0.50
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (16 bp):
AAGAATAAATAAAAAT
Found at i:118871447 original size:17 final size:17
Alignment explanation
Indices: 118871427--118871464 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
118871417 TTTTCTTTTA
118871427 TTTTTAAGATTCATTCG
1 TTTTTAAGATTCATTCG
*
118871444 TTTTTAAGATTCATTTG
1 TTTTTAAGATTCATTCG
118871461 TTTT
1 TTTT
118871465 CCTTAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.08, G:0.11, T:0.61
Consensus pattern (17 bp):
TTTTTAAGATTCATTCG
Found at i:118871716 original size:21 final size:21
Alignment explanation
Indices: 118871687--118871734 Score: 87
Period size: 21 Copynumber: 2.2 Consensus size: 21
118871677 TATTTATTTC
118871687 ATTATCAGAAAATCCCTGAATA
1 ATTA-CAGAAAATCCCTGAATA
118871709 ATTACAGAAAATCCCTGAATA
1 ATTACAGAAAATCCCTGAATA
118871730 ATTAC
1 ATTAC
118871735 CTTGTTCTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.46, C:0.19, G:0.08, T:0.27
Consensus pattern (21 bp):
ATTACAGAAAATCCCTGAATA
Found at i:118876558 original size:39 final size:39
Alignment explanation
Indices: 118876515--118876600 Score: 163
Period size: 39 Copynumber: 2.2 Consensus size: 39
118876505 GCATGAATTG
118876515 GTAAGTTTTGTTATTTGATGTGGTATGCATGGATGGCTT
1 GTAAGTTTTGTTATTTGATGTGGTATGCATGGATGGCTT
118876554 GTAAGTTTTGTTATTTGATGTGGTATGCATGGATGGCTT
1 GTAAGTTTTGTTATTTGATGTGGTATGCATGGATGGCTT
*
118876593 GAAAGTTT
1 GTAAGTTT
118876601 GGCTTGATAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.20, C:0.05, G:0.30, T:0.45
Consensus pattern (39 bp):
GTAAGTTTTGTTATTTGATGTGGTATGCATGGATGGCTT
Found at i:118878551 original size:14 final size:13
Alignment explanation
Indices: 118878531--118878567 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
118878521 AATATTTAAC
118878531 TTGTTCTTAATTA
1 TTGTTCTTAATTA
118878544 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
118878558 TTGTT-TTAAT
1 TTGTTCTTAAT
118878568 ATTCCACGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:118890182 original size:24 final size:24
Alignment explanation
Indices: 118890113--118890184 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
118890103 TTGATTAAGT
* *
118890113 TAAAATGATTAAATTGTAAAAGAGG
1 TAAAAGGATTAAATTGT-AAAGGGG
*
118890138 TAAAAGGATTAAATTTTAAAGGGG
1 TAAAAGGATTAAATTGTAAAGGGG
118890162 TAAAAGGATT-AATTAGTAAAGGG
1 TAAAAGGATTAAATT-GTAAAGGG
118890185 ACCAAAATGG
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
23 4 0.10
24 23 0.55
25 15 0.36
ACGTcount: A:0.49, C:0.00, G:0.24, T:0.28
Consensus pattern (24 bp):
TAAAAGGATTAAATTGTAAAGGGG
Found at i:118890230 original size:30 final size:30
Alignment explanation
Indices: 118890194--118890253 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
118890184 GACCAAAATG
118890194 GTGATTAAACCTTGGTCAAAAAGTCCAAGC
1 GTGATTAAACCTTGGTCAAAAAGTCCAAGC
*
118890224 GTGATTAAACCTTGGTCAAAAAGTGCAAGC
1 GTGATTAAACCTTGGTCAAAAAGTCCAAGC
118890254 AGTGGTGGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (30 bp):
GTGATTAAACCTTGGTCAAAAAGTCCAAGC
Found at i:118893867 original size:33 final size:32
Alignment explanation
Indices: 118893830--118893899 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 32
118893820 ACTTCTCTAA
118893830 ATTAATATAATTTTATGT-T-TTTTATATTATAAT
1 ATTAA-ATAATTTTAT-TATATTTTA-ATTATAAT
118893863 ATTAAATAATTTTATTCATATTTTAATTATAAT
1 ATTAAATAATTTTATT-ATATTTTAATTATAAT
118893896 ATTA
1 ATTA
118893900 TTTCTTAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
31 1 0.03
32 10 0.29
33 18 0.53
34 5 0.15
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (32 bp):
ATTAAATAATTTTATTATATTTTAATTATAAT
Found at i:118897087 original size:20 final size:23
Alignment explanation
Indices: 118897048--118897088 Score: 61
Period size: 20 Copynumber: 1.9 Consensus size: 23
118897038 AATATTTAAA
118897048 TTGAGAGAATTATGTTCTTTTTT
1 TTGAGAGAATTATGTTCTTTTTT
118897071 TTGA-AGAATT-T-TTCTTTT
1 TTGAGAGAATTATGTTCTTTT
118897089 GGGGCTTCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 1 0.06
22 6 0.33
23 4 0.22
ACGTcount: A:0.22, C:0.05, G:0.15, T:0.59
Consensus pattern (23 bp):
TTGAGAGAATTATGTTCTTTTTT
Found at i:118922977 original size:12 final size:13
Alignment explanation
Indices: 118922941--118922978 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
118922931 AAATATTTGA
118922941 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
118922954 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
118922968 CTTG-TCTTAAT
1 CTTGTTCTTAAT
118922979 ATTCCATGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:118923954 original size:39 final size:39
Alignment explanation
Indices: 118923900--118923978 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
118923890 CCTCTATCCT
*
118923900 CCATACACACTTAGAGACTTCAATGGTATTTAACATGGC
1 CCATACACACTTAGAGACTTCAAAGGTATTTAACATGGC
118923939 CCATACACACTTAGAGACTTCAAAGGTATTTAACATGGC
1 CCATACACACTTAGAGACTTCAAAGGTATTTAACATGGC
118923978 C
1 C
118923979 TAATTATACT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (39 bp):
CCATACACACTTAGAGACTTCAAAGGTATTTAACATGGC
Found at i:118935329 original size:38 final size:38
Alignment explanation
Indices: 118935277--118935353 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
118935267 ATCATAAATC
118935277 ATACAAGATAAGACTAGCCACAGATATATATACATACT
1 ATACAAGATAAGACTAGCCACAGATATATATACATACT
* *
118935315 ATACAAGATGAGACTAGCCATAGATATATATACATACT
1 ATACAAGATAAGACTAGCCACAGATATATATACATACT
118935353 A
1 A
118935354 ACATATACCA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.47, C:0.17, G:0.12, T:0.25
Consensus pattern (38 bp):
ATACAAGATAAGACTAGCCACAGATATATATACATACT
Found at i:118945084 original size:12 final size:13
Alignment explanation
Indices: 118945067--118945104 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
118945057 ATCCTAGAAT
118945067 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
118945079 ATTAAGAACACATA
1 ATTAAGAACA-AGA
118945093 ATTAAGAACAAG
1 ATTAAGAACAAG
118945105 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:118946003 original size:4 final size:4
Alignment explanation
Indices: 118945994--118946019 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
118945984 CCATAAAGTA
118945994 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
118946020 CCAAATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:118973353 original size:13 final size:13
Alignment explanation
Indices: 118973314--118973353 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
118973304 TTTAAATCAA
*
118973314 ACTTTCCAAAAGC
1 ACTTTTCAAAAGC
* *
118973327 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
118973340 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
118973353 A
1 A
118973354 TTGCTAAACT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.35, C:0.30, G:0.07, T:0.28
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:118974317 original size:57 final size:58
Alignment explanation
Indices: 118974237--118974346 Score: 150
Period size: 57 Copynumber: 1.9 Consensus size: 58
118974227 GCTGAATATA
* **
118974237 GAGAAATGTGAAACATTTCGAAATGATTATACTTTTCTCCAAAATGAAAATGAAAATG
1 GAGAAATGTGAAACATTTCGAAATGAATATACTTTTCTCCAAAACCAAAATGAAAATG
* * **
118974295 GAGAAATG-GAATCATTTGGAAATGAATATGGTTTTCTCCAAAACCAAAATGA
1 GAGAAATGTGAAACATTTCGAAATGAATATACTTTTCTCCAAAACCAAAATGA
118974347 CCTAGAAATG
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 37 0.82
58 8 0.18
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.28
Consensus pattern (58 bp):
GAGAAATGTGAAACATTTCGAAATGAATATACTTTTCTCCAAAACCAAAATGAAAATG
Found at i:118977384 original size:93 final size:93
Alignment explanation
Indices: 118977272--118977443 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
118977262 GCCCATAAGT
* *
118977272 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
118977337 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
118977365 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
118977430 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
118977444 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:118977439 original size:46 final size:46
Alignment explanation
Indices: 118977264--118977439 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
118977254 TGTAACCCGC
* * *
118977264 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
118977310 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
118977360 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
118977403 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
118977440 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:118979995 original size:24 final size:24
Alignment explanation
Indices: 118979968--118980018 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
118979958 ATTTTTTTAT
118979968 TAAGTAAAATATAAA-ATA-ATAAAA
1 TAAGTAAAATA-AAATATACA-AAAA
*
118979992 TAAGTTAAATAAAATATACAAAAA
1 TAAGTAAAATAAAATATACAAAAA
118980016 TAA
1 TAA
118980019 AAACATCATC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 3 0.12
24 20 0.83
25 1 0.04
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (24 bp):
TAAGTAAAATAAAATATACAAAAA
Found at i:118981048 original size:44 final size:43
Alignment explanation
Indices: 118980985--118981106 Score: 145
Period size: 44 Copynumber: 2.8 Consensus size: 43
118980975 TGTCATTAGG
118980985 ATTTATATTCAAAAGGTACTATGTACCGGTGTTGGCTACCTGCC
1 ATTTATATTCAAAA-GTACTATGTACCGGTGTTGGCTACCTGCC
* * * ** *
118981029 ATTTATATTCAGCAAGTACTATGTATCAGTGTTGGCTATGTTCC
1 ATTTATATTCA-AAAGTACTATGTACCGGTGTTGGCTACCTGCC
* *
118981073 ATTTATATTCAATAGGTACTATGTACCGATGTTG
1 ATTTATATTCAA-AAGTACTATGTACCGGTGTTG
118981107 CAGTAGCAGA
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 63 0.97
45 2 0.03
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (43 bp):
ATTTATATTCAAAAGTACTATGTACCGGTGTTGGCTACCTGCC
Found at i:118981712 original size:30 final size:34
Alignment explanation
Indices: 118981653--118981716 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 34
118981643 TAGAAAAATA
118981653 TTACTGTATATATGTTTGAAAATTTTTATTATTAT
1 TTACTGTATATA-GTTTGAAAATTTTTATTATTAT
118981688 TTACTGTAT-TA-TTT-AAAA-TTTTATTATTA
1 TTACTGTATATAGTTTGAAAATTTTTATTATTA
118981717 GATATATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
30 11 0.38
31 4 0.14
32 3 0.10
34 2 0.07
35 9 0.31
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.58
Consensus pattern (34 bp):
TTACTGTATATAGTTTGAAAATTTTTATTATTAT
Found at i:118984635 original size:5 final size:6
Alignment explanation
Indices: 118984608--118984677 Score: 63
Period size: 6 Copynumber: 11.5 Consensus size: 6
118984598 AAAAGTCTAG
* * **
118984608 AAAAAT AAAAAT AAACAG AAAAAT AAAAAT AATAACC AAAAAT -AAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AA-AAAT AAAAAT AAAAAT
118984656 AAGAAA- AAAATAT AAAAAT AAA
1 AA-AAAT AAAA-AT AAAAAT AAA
118984678 TGGACTCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
5 7 0.14
6 33 0.65
7 11 0.22
ACGTcount: A:0.79, C:0.04, G:0.03, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:118987814 original size:39 final size:39
Alignment explanation
Indices: 118987703--118987912 Score: 215
Period size: 39 Copynumber: 5.3 Consensus size: 39
118987693 ATTTGATGTG
* * *
118987703 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGACTT-AAGATCCGCAGGCT-TCGTGCTGGAATTA
* * *
118987743 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGATCCGCAGGCTTCGTGCTGGAATTA
* * *
118987783 TATCCGAACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTA
* * *
118987822 TATCCGGACTTAAGATTCGCAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTA
* * * * *
118987861 TATCCGGACCTAAGGTCCGCAGGCTTCGTACTGGTACTA
1 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTA
* *
118987900 TATTCGGGCTTAA
1 TATCCGGACTTAA
118987913 AGTCCCGTAG
Statistics
Matches: 150, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 105 0.70
40 45 0.30
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGAATTA
Found at i:118987815 original size:79 final size:79
Alignment explanation
Indices: 118987732--118987926 Score: 248
Period size: 78 Copynumber: 2.5 Consensus size: 79
118987722 GCAGGCTATA
* * *
118987732 TGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGAACTTAAG
1 TGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAACTATATCCGAACCTAAG
118987797 GTCCGCAGGCTTCG
66 GTCCGCAGGCTTCG
* * ** * *
118987811 TGCTGGAATTGTATCCGGACTT-AAGATTCGCAGGCTTCGTGCTGGTACTATATCCGGACCTAAG
1 TGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAACTATATCCGAACCTAAG
118987875 GTCCGCAGGCTTCG
66 GTCCGCAGGCTTCG
* * * * * *
118987889 TACTGGTACTATATTCGGGCTTAAAGTCCCGTAGGCTT
1 TGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTT
118987927 TGTGTTGGTG
Statistics
Matches: 96, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 65 0.68
79 31 0.32
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.29
Consensus pattern (79 bp):
TGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAACTATATCCGAACCTAAG
GTCCGCAGGCTTCG
Found at i:118989704 original size:3 final size:3
Alignment explanation
Indices: 118989696--118989759 Score: 94
Period size: 3 Copynumber: 21.3 Consensus size: 3
118989686 ATTAAAGAAT
* *
118989696 TAA TAA TAAA TAT TAA TGA -AA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
118989741 TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA T
118989760 CGAAATAAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
2 1 0.02
3 51 0.93
4 3 0.05
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:118989710 original size:21 final size:21
Alignment explanation
Indices: 118989667--118989746 Score: 65
Period size: 21 Copynumber: 3.7 Consensus size: 21
118989657 GAAAAAAAAT
*
118989667 AGAAATAATCATAAACTAAATTAA
1 AGAAATAATAATAAA-T--ATTAA
*
118989691 AGAATTAATAATAAATATTAA
1 AGAAATAATAATAAATATTAA
* *
118989712 TGAAATAATAAT-AATAATAA
1 AGAAATAATAATAAATATTAA
118989732 TA-ATAATAATAATAA
1 -AGA-AATAATAATAA
118989747 TAATAATAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
20 8 0.17
21 24 0.51
22 1 0.02
23 1 0.02
24 13 0.28
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.30
Consensus pattern (21 bp):
AGAAATAATAATAAATATTAA
Found at i:118992211 original size:21 final size:21
Alignment explanation
Indices: 118992178--118992217 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
118992168 CAGATTTTTG
* *
118992178 CTTATCTTGACTTACCTCAAC
1 CTTACCTTAACTTACCTCAAC
118992199 CTTACCTTAACTTACCTCA
1 CTTACCTTAACTTACCTCA
118992218 CTTTCTTGCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.35, G:0.03, T:0.38
Consensus pattern (21 bp):
CTTACCTTAACTTACCTCAAC
Found at i:118993773 original size:6 final size:6
Alignment explanation
Indices: 118993757--118993802 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
118993747 ATTAGTAAAC
* * *
118993757 AAAAAT TAAAAT AAAAAT AAAAA- AGAAA- AGAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
118993803 GGCTAAAGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
5 9 0.26
6 26 0.74
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:119004060 original size:12 final size:12
Alignment explanation
Indices: 119004035--119004068 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
119004025 TCTATTTTCA
119004035 TCTATTTGTTTAT
1 TCTATTT-TTTAT
*
119004048 TTTATTTTTTAT
1 TCTATTTTTTAT
119004060 TCTATTTTT
1 TCTATTTTT
119004069 AAATAATACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.76
Consensus pattern (12 bp):
TCTATTTTTTAT
Found at i:119016028 original size:62 final size:62
Alignment explanation
Indices: 119015947--119016082 Score: 175
Period size: 62 Copynumber: 2.2 Consensus size: 62
119015937 AGAGTCACAT
* * * * * *
119015947 AGCCTGGACACACATTCGTGTCCCTGGCTGTGTGGTTTTATATC-ATGAACAGTGAGTTACAC
1 AGCCTGGGCACACACTCGTGTCCCTGGCCGTGTGATTTTATA-CAATGAACAATAAGTTACAC
* * *
119016009 GGCCTGGGCACACGCTCGTGTTCCTGGCCGTGTGATTTTATACAATGAACAATAAGTTACAC
1 AGCCTGGGCACACACTCGTGTCCCTGGCCGTGTGATTTTATACAATGAACAATAAGTTACAC
119016071 AGCCTGGGCACA
1 AGCCTGGGCACA
119016083 TATGGCTCTT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
61 1 0.02
62 62 0.98
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (62 bp):
AGCCTGGGCACACACTCGTGTCCCTGGCCGTGTGATTTTATACAATGAACAATAAGTTACAC
Found at i:119017513 original size:16 final size:16
Alignment explanation
Indices: 119017492--119017522 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
119017482 AAGAAAATTT
119017492 ATTTTTATTTTTATTA
1 ATTTTTATTTTTATTA
119017508 ATTTTTATTTTTATT
1 ATTTTTATTTTTATT
119017523 TTAAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
ATTTTTATTTTTATTA
Found at i:119018495 original size:18 final size:18
Alignment explanation
Indices: 119018451--119018504 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
119018441 ACTAGTGCCT
*
119018451 TTCAGTCGATCAGTAACACA
1 TTCAGTC-A-CAGTATCACA
* *
119018471 TTTAGTCACAGTATCATA
1 TTCAGTCACAGTATCACA
*
119018489 TTCAGTCACGGTATCA
1 TTCAGTCACAGTATCA
119018505 GTAGTTCTCA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
18 22 0.76
19 1 0.03
20 6 0.21
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31
Consensus pattern (18 bp):
TTCAGTCACAGTATCACA
Found at i:119020369 original size:6 final size:6
Alignment explanation
Indices: 119020358--119020399 Score: 57
Period size: 6 Copynumber: 6.7 Consensus size: 6
119020348 AAGGAAGAAG
*
119020358 AATAAA AATAAA AATAAA TAATAAA ATTAAA AATAAA TAATA
1 AATAAA AATAAA AATAAA -AATAAA AATAAA AATAAA -AATA
119020400 TTAATATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
6 22 0.69
7 10 0.31
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (6 bp):
AATAAA
Found at i:119020382 original size:19 final size:19
Alignment explanation
Indices: 119020358--119020399 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
119020348 AAGGAAGAAG
119020358 AATAAAAATAAAAATAAAT
1 AATAAAAATAAAAATAAAT
*
119020377 AATAAAATTAAAAATAAAT
1 AATAAAAATAAAAATAAAT
119020396 AATA
1 AATA
119020400 TTAATATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAT
Found at i:119020402 original size:16 final size:17
Alignment explanation
Indices: 119020366--119020413 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 17
119020356 AGAATAAAAA
119020366 TAAAAATAAATAATAAAAT
1 TAAAAATAAATAAT--AAT
119020385 TAAAAATAAATAAT-AT
1 TAAAAATAAATAATAAT
* *
119020401 TAATATTAAATAA
1 TAAAAATAAATAA
119020414 ATAAACTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 13 0.48
19 14 0.52
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
TAAAAATAAATAATAAT
Found at i:119020425 original size:20 final size:20
Alignment explanation
Indices: 119020369--119020417 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
119020359 ATAAAAATAA
*
119020369 AAATAAATAATA-AAAT-TAA
1 AAATAAATAATATAAATAT-T
*
119020388 AAATAAATAATATTAATATT
1 AAATAAATAATATAAATATT
119020408 AAATAAATAA
1 AAATAAATAA
119020418 ACTAAATAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 12 0.46
20 13 0.50
21 1 0.04
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
AAATAAATAATATAAATATT
Found at i:119021804 original size:20 final size:20
Alignment explanation
Indices: 119021781--119021821 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
119021771 TTATTCAAAC
* *
119021781 AATATTACTTGAATAGTTAT
1 AATATTACATGAATAATTAT
*
119021801 AATATTAGATGAATAATTAT
1 AATATTACATGAATAATTAT
119021821 A
1 A
119021822 TGTCTTTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.02, G:0.10, T:0.41
Consensus pattern (20 bp):
AATATTACATGAATAATTAT
Found at i:119026664 original size:6 final size:6
Alignment explanation
Indices: 119026618--119026660 Score: 68
Period size: 6 Copynumber: 7.2 Consensus size: 6
119026608 AAAATAGGGA
* *
119026618 TTGGGG TTGGGG TTGGGG TTAGGG TTGGGG TTGGGG TAGGGG T
1 TTGGGG TTGGGG TTGGGG TTGGGG TTGGGG TTGGGG TTGGGG T
119026661 AGGGAGGAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.05, C:0.00, G:0.63, T:0.33
Consensus pattern (6 bp):
TTGGGG
Found at i:119027018 original size:15 final size:15
Alignment explanation
Indices: 119027000--119027029 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
119026990 ATTTTTTTCA
*
119027000 ATTTTCTTTTCTTTT
1 ATTTTCTTTTATTTT
119027015 ATTTTCTTTTATTTT
1 ATTTTCTTTTATTTT
119027030 TTCAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (15 bp):
ATTTTCTTTTATTTT
Found at i:119027031 original size:17 final size:17
Alignment explanation
Indices: 119026980--119027056 Score: 66
Period size: 17 Copynumber: 4.4 Consensus size: 17
119026970 CATGTGGACC
119026980 TTTTTTTTCAATTTTTTTCA
1 TTTTTTTT--ATTTTTTT-A
* * *
119027000 ATTTTCTT-TTCTTTTA
1 TTTTTTTTATTTTTTTA
*
119027016 TTTTCTTTTATTTTTTCA
1 TTTT-TTTTATTTTTTTA
*
119027034 ATTTTTTTATTTTTTTA
1 TTTTTTTTATTTTTTTA
119027051 TTTTTT
1 TTTTTT
119027057 ATAAAAAAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
16 4 0.09
17 26 0.58
18 9 0.20
20 6 0.13
ACGTcount: A:0.13, C:0.08, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTTTTATTTTTTTA
Found at i:119027045 original size:8 final size:8
Alignment explanation
Indices: 119027011--119027056 Score: 56
Period size: 8 Copynumber: 5.4 Consensus size: 8
119027001 TTTTCTTTTC
119027011 TTTTATTTT
1 TTTTA-TTT
119027020 CTTTTATTT
1 -TTTTATTT
*
119027029 TTTCAATTT
1 TTT-TATTT
119027038 TTTTATTT
1 TTTTATTT
119027046 TTTTATTT
1 TTTTATTT
119027054 TTT
1 TTT
119027057 ATAAAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
8 18 0.55
9 10 0.30
10 5 0.15
ACGTcount: A:0.13, C:0.04, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTATTT
Found at i:119027576 original size:18 final size:17
Alignment explanation
Indices: 119027539--119027581 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
119027529 TCTTGTTTTC
*
119027539 TTTTCTTTTTATTTGGTT
1 TTTTCTTTTTATTT-GAT
* *
119027557 TTTTCTTTTTCTTTTAT
1 TTTTCTTTTTATTTGAT
119027574 TTTTCTTT
1 TTTTCTTT
119027582 CTTTCTCTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.05, C:0.09, G:0.05, T:0.81
Consensus pattern (17 bp):
TTTTCTTTTTATTTGAT
Found at i:119033431 original size:13 final size:13
Alignment explanation
Indices: 119033415--119033439 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
119033405 TGAATTCATA
119033415 TGTGAAATTGTGT
1 TGTGAAATTGTGT
119033428 TGTGAAATTGTG
1 TGTGAAATTGTG
119033440 GAGTACAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (13 bp):
TGTGAAATTGTGT
Found at i:119041307 original size:21 final size:20
Alignment explanation
Indices: 119041283--119041322 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
119041273 ATGTTCAAGT
*
119041283 TCCACACGGGCGTGTTGCCCA
1 TCCACACAGGCGTG-TGCCCA
119041304 TCCACACAGGCGTGTGCCC
1 TCCACACAGGCGTGTGCCC
119041323 TGTTTCAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.15, C:0.40, G:0.28, T:0.17
Consensus pattern (20 bp):
TCCACACAGGCGTGTGCCCA
Found at i:119042123 original size:20 final size:20
Alignment explanation
Indices: 119042098--119042139 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
119042088 ATTAGAATGT
119042098 AAATATT-AAATTAAAAACAA
1 AAATATTAAAATT-AAAACAA
119042118 AAATATTAAAATTAAAACAA
1 AAATATTAAAATTAAAACAA
119042138 AA
1 AA
119042140 TTGGATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (20 bp):
AAATATTAAAATTAAAACAA
Found at i:119049675 original size:44 final size:44
Alignment explanation
Indices: 119049612--119049697 Score: 163
Period size: 44 Copynumber: 2.0 Consensus size: 44
119049602 TAGGACTGAG
119049612 ATTTTATTTGGAAATTACACCAACAAGTTCTAAAAATTCTTTTT
1 ATTTTATTTGGAAATTACACCAACAAGTTCTAAAAATTCTTTTT
*
119049656 ATTTTATTTGGAAATTACACCAATAAGTTCTAAAAATTCTTT
1 ATTTTATTTGGAAATTACACCAACAAGTTCTAAAAATTCTTT
119049698 CTATCCTTCC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (44 bp):
ATTTTATTTGGAAATTACACCAACAAGTTCTAAAAATTCTTTTT
Found at i:119050447 original size:2 final size:2
Alignment explanation
Indices: 119050442--119050479 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
119050432 ATGCAATTTC
119050442 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
119050480 CGCAGATCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:119050893 original size:12 final size:12
Alignment explanation
Indices: 119050876--119050901 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
119050866 TTATAGAACA
119050876 CATTTACGGCCT
1 CATTTACGGCCT
119050888 CATTTACGGCCT
1 CATTTACGGCCT
119050900 CA
1 CA
119050902 AAAACGGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.35, G:0.15, T:0.31
Consensus pattern (12 bp):
CATTTACGGCCT
Found at i:119052075 original size:14 final size:14
Alignment explanation
Indices: 119052056--119052085 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
119052046 TTATATCAAG
119052056 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
119052070 ACCAATCCAATTCA
1 ACCAATCCAAATCA
119052084 AC
1 AC
119052086 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:119062296 original size:15 final size:15
Alignment explanation
Indices: 119062276--119062323 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
119062266 TTGCTTCATA
119062276 TTATATTTTAATTAT
1 TTATATTTTAATTAT
* *
119062291 TTATATTTAAAATA-
1 TTATATTTTAATTAT
* *
119062305 TTACATTTTAGTTAT
1 TTATATTTTAATTAT
119062320 TTAT
1 TTAT
119062324 GTTATCATTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (15 bp):
TTATATTTTAATTAT
Found at i:119064035 original size:18 final size:20
Alignment explanation
Indices: 119064014--119064054 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
119064004 AAAAATATTT
119064014 AAATTATTTTTT-A-TTTTA
1 AAATTATTTTTTAATTTTTA
*
119064032 AAATTTTTTTTTAATTTTTA
1 AAATTATTTTTTAATTTTTA
119064052 AAA
1 AAA
119064055 ATTAATTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 11 0.55
19 1 0.05
20 8 0.40
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
AAATTATTTTTTAATTTTTA
Found at i:119064779 original size:29 final size:29
Alignment explanation
Indices: 119064728--119064784 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
119064718 ATTGGTTATG
119064728 TATATTTTTAATTTTAAGATAAT-TTTTA
1 TATATTTTTAATTTTAAGATAATATTTTA
119064756 TATATTTTTTAATTTTAA-ATTAATATTTT
1 TATA-TTTTTAATTTTAAGA-TAATATTTT
119064785 TATTTTATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 5 0.19
29 17 0.65
30 4 0.15
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (29 bp):
TATATTTTTAATTTTAAGATAATATTTTA
Found at i:119065458 original size:23 final size:23
Alignment explanation
Indices: 119065426--119065473 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
119065416 GTCACGTTGC
119065426 GACTTCAGACATCTCGACATCAT
1 GACTTCAGACATCTCGACATCAT
*
119065449 GACTTTAGACATCTCGACATCAT
1 GACTTCAGACATCTCGACATCAT
119065472 GA
1 GA
119065474 TGTCACTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (23 bp):
GACTTCAGACATCTCGACATCAT
Found at i:119069651 original size:18 final size:18
Alignment explanation
Indices: 119069610--119069652 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
119069600 ATTATTTGTT
***
119069610 AATATTTTATTAAACCGA
1 AATATTTTATTAAAAAAA
*
119069628 ATTATTTTATTAAAAAAA
1 AATATTTTATTAAAAAAA
119069646 AATATTT
1 AATATTT
119069653 ACGTTTTAAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (18 bp):
AATATTTTATTAAAAAAA
Found at i:119072828 original size:17 final size:17
Alignment explanation
Indices: 119072808--119072847 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
119072798 GAATATGACC
119072808 TATTTCTCTAACTTCAT
1 TATTTCTCTAACTTCAT
119072825 TATTTCTCTAACTTCAT
1 TATTTCTCTAACTTCAT
119072842 TATTTC
1 TATTTC
119072848 CATTTGTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.55
Consensus pattern (17 bp):
TATTTCTCTAACTTCAT
Found at i:119074735 original size:27 final size:27
Alignment explanation
Indices: 119074705--119074758 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
119074695 ATTAATAAAA
119074705 TTTGTATTTCTCTTTGTCTTACTGTAT
1 TTTGTATTTCTCTTTGTCTTACTGTAT
119074732 TTTGTATTTCTCTTTGTCTTACTGTAT
1 TTTGTATTTCTCTTTGTCTTACTGTAT
119074759 ATTCTCTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.11, C:0.15, G:0.11, T:0.63
Consensus pattern (27 bp):
TTTGTATTTCTCTTTGTCTTACTGTAT
Found at i:119075490 original size:4 final size:4
Alignment explanation
Indices: 119075481--119075507 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
119075471 GAATGAGAAG
119075481 AAGA AAGA AAGA AAGA AAGA AAGA AAG
1 AAGA AAGA AAGA AAGA AAGA AAGA AAG
119075508 GGTTAATAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:119079880 original size:6 final size:6
Alignment explanation
Indices: 119079869--119079908 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
119079859 AAAAAGCACA
*
119079869 CACACC CACACC CACACC CACACC CACACC CACACA CACA
1 CACACC CACACC CACACC CACACC CACACC CACACC CACA
119079909 TATATATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.38, C:0.62, G:0.00, T:0.00
Consensus pattern (6 bp):
CACACC
Found at i:119079892 original size:18 final size:18
Alignment explanation
Indices: 119079865--119079908 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
119079855 ATATAAAAAG
119079865 CACACACACCCACACCCA
1 CACACACACCCACACCCA
*
119079883 CACCCACACCCACACCCA
1 CACACACACCCACACCCA
119079901 CACACACA
1 CACACACA
119079909 TATATATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.39, C:0.61, G:0.00, T:0.00
Consensus pattern (18 bp):
CACACACACCCACACCCA
Found at i:119080639 original size:68 final size:67
Alignment explanation
Indices: 119080567--119080694 Score: 177
Period size: 68 Copynumber: 1.9 Consensus size: 67
119080557 AAGCATATAT
* * *
119080567 TTAGCCAATTTGTTTTAGGGTTCATAAGAAATT-ATGGATATTTTTAGTTTGTTTGATTTTTGTG
1 TTAGCCAATCTGTTTTAGGGTTCATAAAAAATTAAT--ATATTTTTAGATTGTTTGATTTTTGTG
119080631 CCAA
64 CCAA
* *
119080635 TTAGCCAATCTGTTTTCGGGTTCATAAAAAATTGAATATTTTTTTAGATTGTTTGATTTT
1 TTAGCCAATCTGTTTTAGGGTTCATAAAAAATT-AATATATTTTTAGATTGTTTGATTTT
119080695 GTGTCAGCTG
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
68 51 0.96
70 2 0.04
ACGTcount: A:0.26, C:0.08, G:0.17, T:0.49
Consensus pattern (67 bp):
TTAGCCAATCTGTTTTAGGGTTCATAAAAAATTAATATATTTTTAGATTGTTTGATTTTTGTGCC
AA
Found at i:119085468 original size:33 final size:33
Alignment explanation
Indices: 119085422--119085499 Score: 111
Period size: 33 Copynumber: 2.3 Consensus size: 33
119085412 TTCTCACCTA
* * *
119085422 AACCTTCACCACCCTCACCATCTTTATTGCCAGC
1 AACC-TCAACACCCTCACCACCTTTACTGCCAGC
*
119085456 AACCTCAACACCCTTACCACCTTTACTGCCAGC
1 AACCTCAACACCCTCACCACCTTTACTGCCAGC
119085489 AACCTCAACAC
1 AACCTCAACAC
119085500 ATTCGTTACC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 36 0.90
34 4 0.10
ACGTcount: A:0.28, C:0.45, G:0.05, T:0.22
Consensus pattern (33 bp):
AACCTCAACACCCTCACCACCTTTACTGCCAGC
Found at i:119085693 original size:22 final size:22
Alignment explanation
Indices: 119085668--119085711 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
119085658 AAAACCCTAA
119085668 GGTTATCCTATAAAGTCCTACT
1 GGTTATCCTATAAAGTCCTACT
*
119085690 GGTTATCCTGTAAAGTCCTACT
1 GGTTATCCTATAAAGTCCTACT
119085712 ACTAGGTACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (22 bp):
GGTTATCCTATAAAGTCCTACT
Found at i:119086395 original size:29 final size:30
Alignment explanation
Indices: 119086363--119086420 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
119086353 AAAATTGAAA
*
119086363 ACCCTAAATAAAAATCTCC-AAATCAAAAT
1 ACCCTAAATAAAAATCCCCAAAATCAAAAT
*
119086392 ACCCTAAATGAAAATCCCCAAAATCAAAA
1 ACCCTAAATAAAAATCCCCAAAATCAAAA
119086421 CTCCTAACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.55, C:0.26, G:0.02, T:0.17
Consensus pattern (30 bp):
ACCCTAAATAAAAATCCCCAAAATCAAAAT
Found at i:119086426 original size:29 final size:28
Alignment explanation
Indices: 119086360--119086485 Score: 82
Period size: 29 Copynumber: 4.4 Consensus size: 28
119086350 TTAAAAATTG
*
119086360 AAAAC-CCTAAATAAAAATCTCCAAATC
1 AAAACTCCTAAATAAAAATCCCCAAATC
*
119086387 AAAA-TACCCTAAATGAAAATCCCCAAAATC
1 AAAACT--CCTAAATAAAAATCCCC-AAATC
*** *
119086417 AAAACTCCTAACCCAAAATCCCTAAATCC
1 AAAACTCCTAAATAAAAATCCCCAAAT-C
* *
119086446 GACAA--CCTAAATCAAAATCCCCAAACTC
1 -AAAACTCCTAAATAAAAATCCCCAAA-TC
119086474 AAAAAC-CCTAAA
1 -AAAACTCCTAAA
119086486 CATAAACCGA
Statistics
Matches: 78, Mismatches: 12, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
27 4 0.05
28 25 0.32
29 36 0.46
30 12 0.15
31 1 0.01
ACGTcount: A:0.52, C:0.31, G:0.02, T:0.16
Consensus pattern (28 bp):
AAAACTCCTAAATAAAAATCCCCAAATC
Found at i:119086477 original size:43 final size:42
Alignment explanation
Indices: 119086358--119086485 Score: 127
Period size: 43 Copynumber: 3.0 Consensus size: 42
119086348 TATTAAAAAT
*
119086358 TGAAAACCCTAAATAAAAATCTCCAAA-TCAAAATACCCTAAA
1 TGAAAACCCTAAATCAAAATCTCCAAACTCAAAAT-CCCTAAA
* * *
119086400 TGAAAATCCCCAAAATCAAAA-CTCCTAACCCAAAATCCCTAAA
1 TGAAAA--CCCTAAATCAAAATCTCCAAACTCAAAATCCCTAAA
* * *
119086443 TCCGACAA-CCTAAATCAAAATCCCCAAACTCAAAAACCCTAAA
1 T--GAAAACCCTAAATCAAAATCTCCAAACTCAAAATCCCTAAA
119086486 CATAAACCGA
Statistics
Matches: 70, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
42 17 0.24
43 32 0.46
44 17 0.24
45 4 0.06
ACGTcount: A:0.51, C:0.30, G:0.02, T:0.16
Consensus pattern (42 bp):
TGAAAACCCTAAATCAAAATCTCCAAACTCAAAATCCCTAAA
Found at i:119098759 original size:11 final size:11
Alignment explanation
Indices: 119098743--119098767 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
119098733 TTACTTACTC
119098743 AAGATTGAGGT
1 AAGATTGAGGT
119098754 AAGATTGAGGT
1 AAGATTGAGGT
119098765 AAG
1 AAG
119098768 TCCCACTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.36, T:0.24
Consensus pattern (11 bp):
AAGATTGAGGT
Found at i:119099354 original size:9 final size:9
Alignment explanation
Indices: 119099284--119099457 Score: 77
Period size: 10 Copynumber: 18.1 Consensus size: 9
119099274 AATTACTCTT
119099284 TTTTTATAA
1 TTTTTATAA
119099293 TTTCTTAT--
1 TTT-TTATAA
119099301 TTTTTATAA
1 TTTTTATAA
* *
119099310 TTTATTAGAGG
1 TTT-TTATA-A
* *
119099321 TTTTTTTATT
1 TTTTTATA-A
119099331 TTTTTATATA
1 TTTTTATA-A
119099341 TTTTTATAA
1 TTTTTATAA
*
119099350 GTTTTATGAA
1 TTTTTAT-AA
*
119099360 TTTTTATATT
1 TTTTTATA-A
119099370 TTTTTATAAA
1 TTTTTAT-AA
*
119099380 ATTTTA-AA
1 TTTTTATAA
119099388 TTATTTA-ATA
1 TT-TTTATA-A
119099398 TGTTTTATTAA
1 T-TTTTA-TAA
**
119099409 TTTTATATTT
1 TTTT-TATAA
119099419 TTTTTATAA
1 TTTTTATAA
* *
119099428 TTTATTAGAC
1 TTT-TTATAA
*
119099438 TTTATTAGAA
1 TTT-TTATAA
119099448 TTTTTATAA
1 TTTTTATAA
119099457 T
1 T
119099458 ATAAAAAATC
Statistics
Matches: 128, Mismatches: 22, Indels: 30
0.71 0.12 0.17
Matches are distributed among these distances:
7 4 0.03
8 6 0.05
9 31 0.24
10 77 0.60
11 9 0.07
12 1 0.01
ACGTcount: A:0.30, C:0.01, G:0.05, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:119099589 original size:2 final size:2
Alignment explanation
Indices: 119099584--119099616 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
119099574 TCTAATAATT
119099584 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
119099617 TTATTTATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:119100814 original size:2 final size:2
Alignment explanation
Indices: 119100807--119100845 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
119100797 CTCATGTCCC
119100807 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
119100846 ATTGTGTATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:119102252 original size:31 final size:31
Alignment explanation
Indices: 119102184--119102252 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 31
119102174 TCTTTTTTAG
* *
119102184 TTAAATTTAACTCTCAACTTTTTTAACAAAG
1 TTAAATTTAACTCTCAACTTTTTTAAAAAAA
*
119102215 TCAAATTTAAC-CATCAAC-TTTTTAAAAATAA
1 TTAAATTTAACTC-TCAACTTTTTTAAAAA-AA
119102246 TTAAATT
1 TTAAATT
119102253 GCTGTTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 10 0.31
31 22 0.69
ACGTcount: A:0.43, C:0.14, G:0.01, T:0.41
Consensus pattern (31 bp):
TTAAATTTAACTCTCAACTTTTTTAAAAAAA
Found at i:119104781 original size:24 final size:24
Alignment explanation
Indices: 119104754--119104801 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
119104744 ATCAAGTGTG
119104754 TATCCATTTATTCCAAAATGACAC
1 TATCCATTTATTCCAAAATGACAC
**
119104778 TATCTGTTTATTCCAAAATGACAC
1 TATCCATTTATTCCAAAATGACAC
119104802 ACTTATAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.35
Consensus pattern (24 bp):
TATCCATTTATTCCAAAATGACAC
Found at i:119108875 original size:3 final size:3
Alignment explanation
Indices: 119108867--119108898 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
119108857 AGATATTTAC
119108867 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
119108899 TACAAATGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:119118407 original size:19 final size:20
Alignment explanation
Indices: 119118385--119118425 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
119118375 TAAATTCATT
*
119118385 ATATT-AAATTAAAAAAATA
1 ATATTAAAAGTAAAAAAATA
*
119118404 ATATTAAAAGTAAAAATATA
1 ATATTAAAAGTAAAAAAATA
119118424 AT
1 AT
119118426 TAAATATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (20 bp):
ATATTAAAAGTAAAAAAATA
Found at i:119133640 original size:4 final size:4
Alignment explanation
Indices: 119133633--119133669 Score: 56
Period size: 4 Copynumber: 9.2 Consensus size: 4
119133623 AAAAAACTAG
* *
119133633 ATAA ATAA ATAA ATAT AGAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
119133670 ATAAGATACA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:119135350 original size:45 final size:44
Alignment explanation
Indices: 119135229--119135915 Score: 224
Period size: 45 Copynumber: 14.8 Consensus size: 44
119135219 CTTCAAGTAG
* * * *
119135229 CTTCAA-CATGCTCCACTACAACTTCAGGAAGATAAGGTCTG-TAGC
1 CTTCAATC-TGCTCCACTGCAACTTCAGG-AGATAAGATTTGCTA-T
* * * * *
119135274 CTT-AATTTGTTCTACTGCAACTTTAGAGAGATAAAATTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAG-GAGATAAGATTTGCTAT
* * *
119135318 CTTCAGTCTGCTCCACTGCAACTTCATGGAGATAAGACCGGCAACTTG-TAG
1 CTTCAATCTGCTCCACTGCAACTTCA-GGAGAT-A-A---G--ATTTGCTAT
* * * **
119135369 CTTTAATCTGCTCCACTGCAACTTCAGGAAAATGAGATTCACTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGG-AGATAAGATTTGCTAT
* * ** * **
119135414 CTTTAATCTGCTCCGCTGCAACTTCAGGGAGATAAG-GCTGGTGG
1 CTTCAATCTGCTCCACTGCAACTTCA-GGAGATAAGATTTGCTAT
119135458 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATAATTTGT
1 CTTCAATCTGCTCCACTGCAACTTCAGG-AGATAAGATTTG-C-T-A----T
* ** * * *
119135510 AACTTTAATCTATTCCACTGCAACGTCAGGGAAATAAGATTCGCTAT
1 --CTTCAATCTGCTCCACTGCAACTTCA-GGAGATAAGATTTGCTAT
* * * * * *
119135557 CTTCGATCTGCTCCACTGTAACTTTAAGGAGATAAGATCTAC-AA
1 CTTCAATCTGCTCCACTGCAAC-TTCAGGAGATAAGATTTGCTAT
* * *
119135601 CTTCAATCTTCTCCACTGCTACTTCAGGGAGATGAGATTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCA-GGAGATAAGATTTGCTAT
* * ** * ** * **
119135646 CCTCAGTCTGCTCTGCTGCAACTTCAAGGAGATCAG-GCTGATGG
1 CTTCAATCTGCTCCACTGCAACTTC-AGGAGATAAGATTTGCTAT
* * * * * * * *
119135690 CTTTAATCTGCTTCAATGTAAGTTCAGGAAGATAGGGTCTGCCATAATTTGT
1 CTTCAATCTGCTCCACTGCAACTTCAGG-AGATAAGATTTG-C-T-A----T
* * * * * * *
119135742 AGCTTTAATATGTTCCACTGCAACATCAAGGAAATAAGATTCGCTGT
1 --CTTCAATCTGCTCCACTGCAACTTC-AGGAGATAAGATTTGCTAT
* * * * * *
119135789 TTTCAGTCTGCTCCGCTGCAACTTCAAGGAAATAAGA-CTGGT-T
1 CTTCAATCTGCTCCACTGCAACTTC-AGGAGATAAGATTTGCTAT
* *
119135832 GCTTCAATCTGCTCCATTGCAACTTCAGAGAGGTAAGATTTG-TCAT
1 -CTTCAATCTGCTCCACTGCAACTTCAG-GAGATAAGATTTGCT-AT
* * * *
119135878 CTTCGATCTACTCCATTGCAAATTCAAGGAGATAAGAT
1 CTTCAATCTGCTCCACTGCAACTTC-AGGAGATAAGAT
119135916 CTACAACTTC
Statistics
Matches: 463, Mismatches: 130, Indels: 98
0.67 0.19 0.14
Matches are distributed among these distances:
43 11 0.02
44 149 0.32
45 184 0.40
46 11 0.02
47 5 0.01
49 1 0.00
50 2 0.00
51 30 0.06
52 6 0.01
53 2 0.00
54 57 0.12
55 5 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGAGATAAGATTTGCTAT
Found at i:119135550 original size:143 final size:140
Alignment explanation
Indices: 119135318--119135642 Score: 348
Period size: 143 Copynumber: 2.3 Consensus size: 140
119135308 AATTTGCTAT
* ** * * *
119135318 CTTCAGTCTGCTCCACTGCAACTTCATGGAGATAAGA-CCGGCAACTTGTAGCTTTAATCTGCTC
1 CTTCAATCTGCTCCACTGCAACTTCA-GGAGATAAGATTTGCCAACTTGTAACTTTAATCTACTC
* * * * *
119135382 CACTGCAACTTCAGGAAAATGAGATTCACTATCTTTAATCTGCTCCGCTGCAACTTCAGGGAGAT
65 CACTGCAACGTCAGGAAAATAAGATTCACTATCTTCAATCTGCTCCACTGCAACTTCAAGGAGAT
****
119135447 AAG-GCTGGTGG
130 AAGAGCT-ACAA
* *
119135458 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATAATTTGTAACTTTAATCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGG-AGATAAGATTTGCC--AACTTGTAACTTTAATCTAC
* * * * *
119135523 TCCACTGCAACGTCAGGGAAATAAGATTCGCTATCTTCGATCTGCTCCACTGTAACTTTAAGGAG
63 TCCACTGCAACGTCAGGAAAATAAGATTCACTATCTTCAATCTGCTCCACTGCAACTTCAAGGAG
*
119135588 ATAAGATCTACAA
128 ATAAGAGCTACAA
* * *
119135601 CTTCAATCTTCTCCACTGCTACTTCAGGGAGATGAGATTTGC
1 CTTCAATCTGCTCCACTGCAACTTCA-GGAGATAAGATTTGC
119135643 TATCCTCAGT
Statistics
Matches: 153, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
139 2 0.01
140 33 0.22
141 2 0.01
143 112 0.73
144 4 0.03
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (140 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGAGATAAGATTTGCCAACTTGTAACTTTAATCTACTCC
ACTGCAACGTCAGGAAAATAAGATTCACTATCTTCAATCTGCTCCACTGCAACTTCAAGGAGATA
AGAGCTACAA
Found at i:119135666 original size:232 final size:232
Alignment explanation
Indices: 119135304--119135859 Score: 621
Period size: 232 Copynumber: 2.4 Consensus size: 232
119135294 CTTTAGAGAG
* * * * * **
119135304 ATAAAATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCATGGAGATAAGACCGGCAACTTGTAG
1 ATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAAGGAAATAAGATCTACAAC-T-T--
* *
119135369 CTTTAATCTGCTCCACTGCAACTTCAGGAAAATGAGATTCACTATCTTTAATCTGCTCCGCTGCA
62 C---AATCTGCTCCACTGCAACTTCAGGAAAATGAGATTCACTATCCTCAATCTGCTCCGCTGCA
* * * *
119135434 ACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTG
124 ACTTCAAGGAGATAAGGCTGATGGCTTCAATCTGCTCCAATGCAACTTCAGGAAGATAAGATCTG
* * *
119135499 CCATAATTTGTAACTTTAATCTATTCCACTGCAACGTCAGGGAA
189 CCATAATTTGTAACTTTAATATATTCCACTGCAACATCAAGGAA
* * *
119135543 ATAAGATTCGCTATCTTC-GATCTGCTCCACTGTAACTTTAAGGAGATAAGATCTACAACTTCAA
1 ATAAGATTCGCTATCTTCAG-TCTGCTCCACTGCAACTTCAAGGAAATAAGATCTACAACTTCAA
* * * * ** * *
119135607 TCTTCTCCACTGCTACTTCAGGGAGATGAGATTTGCTATCCTCAGTCTGCTCTGCTGCAACTTCA
65 TCTGCTCCACTGCAACTTCAGGAAAATGAGATTCACTATCCTCAATCTGCTCCGCTGCAACTTCA
* * * * * * *
119135672 AGGAGATCAGGCTGATGGCTTTAATCTGCTTCAATGTAAGTTCAGGAAGATAGGGTCTGCCATAA
130 AGGAGATAAGGCTGATGGCTTCAATCTGCTCCAATGCAACTTCAGGAAGATAAGATCTGCCATAA
* *
119135737 TTTGTAGCTTTAATATGTTCCACTGCAACATCAAGGAA
195 TTTGTAACTTTAATATATTCCACTGCAACATCAAGGAA
* * * ****
119135775 ATAAGATTCGCTGTTTTCAGTCTGCTCCGCTGCAACTTCAAGGAAATAAGA-CTGGTTGCTTCAA
1 ATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAAGGAAATAAGATCT-ACAACTTCAA
*
119135839 TCTGCTCCATTGCAACTTCAG
65 TCTGCTCCACTGCAACTTCAG
119135860 AGAGGTAAGA
Statistics
Matches: 267, Mismatches: 47, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
231 2 0.01
232 211 0.79
233 1 0.00
235 1 0.00
237 1 0.00
238 2 0.01
239 49 0.18
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (232 bp):
ATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAAGGAAATAAGATCTACAACTTCAAT
CTGCTCCACTGCAACTTCAGGAAAATGAGATTCACTATCCTCAATCTGCTCCGCTGCAACTTCAA
GGAGATAAGGCTGATGGCTTCAATCTGCTCCAATGCAACTTCAGGAAGATAAGATCTGCCATAAT
TTGTAACTTTAATATATTCCACTGCAACATCAAGGAA
Found at i:119135669 original size:89 final size:89
Alignment explanation
Indices: 119135510--119135678 Score: 207
Period size: 89 Copynumber: 1.9 Consensus size: 89
119135500 CATAATTTGT
* *
119135510 AACTTTAATCTATTCCACTGCAACGTCAGGGAAATAAGATTCGCTATCTTCGATCTGCTCCACTG
1 AACTTCAATCTATTCCACTGCAACGTCAGGGAAATAAGATTCGCTATCCTCGATCTGCTCCACTG
* *
119135575 TAACTTTAAGGAGATAAGATCTAC
66 CAACTTCAAGGAGATAAGATCTAC
* * * * * **
119135599 AACTTCAATCT-TCTCCACTGCTACTTCAGGGAGATGAGATTTGCTATCCTC-AGTCTGCTCTGC
1 AACTTCAATCTAT-TCCACTGCAACGTCAGGGAAATAAGATTCGCTATCCTCGA-TCTGCTCCAC
119135662 TGCAACTTCAAGGAGAT
64 TGCAACTTCAAGGAGAT
119135679 CAGGCTGATG
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
88 2 0.03
89 65 0.97
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (89 bp):
AACTTCAATCTATTCCACTGCAACGTCAGGGAAATAAGATTCGCTATCCTCGATCTGCTCCACTG
CAACTTCAAGGAGATAAGATCTAC
Found at i:119135950 original size:232 final size:232
Alignment explanation
Indices: 119135373--119135959 Score: 520
Period size: 232 Copynumber: 2.5 Consensus size: 232
119135363 TTGTAGCTTT
* * ** * * * * * *
119135373 AATCTGCTCCACTGCAACTTCAG-GAAAATGAGATTCACTATCTTTAATCTGCTCCGCTGCAACT
1 AATCTGCTCCACTGCAACTTCAGAG-AGATAAGATTTGCTATCCTCAGTCTACTCCACTGCAAAT
* **** * ** *
119135437 TCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCA
65 TCAAGGAGATAAGGCTGACAACTTCAATCTGCTCCAATATAACTTCAGGAAGATAAGATCTGCCA
* * *
119135502 TAATTTGTAACTTTAATCTATTCCACTGCAACGTCAGGGAAATAAGATTCGCTATCTTCGATCTG
130 TAATTTGTAACTTTAATATATTCCACTGCAACATCAAGGAAATAAGATTCGCTATCTTCGATCTG
* * *
119135567 CTCCACTGTAACTTTAAGGAGATAAGATCTACAACTTC
195 CTCCACTGCAACTTCAAGGAAATAAGATCTACAACTTC
* * * * * ** *
119135605 AATCTTCTCCACTGCTACTTCAGGGAGATGAGATTTGCTATCCTCAGTCTGCTCTGCTGCAACTT
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCCTCAGTCTACTCCACTGCAAATT
* *** * * * * * *
119135670 CAAGGAGATCAGGCTGATGGCTTTAATCTGCTTCAATGTAAGTTCAGGAAGATAGGGTCTGCCAT
66 CAAGGAGATAAGGCTGACAACTTCAATCTGCTCCAATATAACTTCAGGAAGATAAGATCTGCCAT
* * * *
119135735 AATTTGTAGCTTTAATATGTTCCACTGCAACATCAAGGAAATAAGATTCGCTGTTTTC-AGTCTG
131 AATTTGTAACTTTAATATATTCCACTGCAACATCAAGGAAATAAGATTCGCTATCTTCGA-TCTG
* ****
119135799 CTCCGCTGCAACTTCAAGGAAATAAGA-CTGGTTGCTTC
195 CTCCACTGCAACTTCAAGGAAATAAGATCT-ACAACTTC
* * * *
119135837 AATCTGCTCCATTGCAACTTCAGAGAGGTAAGATTTG-TCATCTTC-GATCTACTCCATTGCAAA
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCT-ATCCTCAG-TCTACTCCACTGCAAA
* * * * * *
119135900 TTCAAGGAGATAAGATCT-ACAACTTCAATTTTCTCCACTATTACTTCAGGAAGATGAGAT
64 TTCAAGGAGATAAG-GCTGACAACTTCAATCTGCTCCAATATAACTTCAGGAAGATAAGAT
119135960 TTGTGGATTC
Statistics
Matches: 286, Mismatches: 63, Indels: 12
0.79 0.17 0.03
Matches are distributed among these distances:
231 5 0.02
232 278 0.97
233 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (232 bp):
AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCCTCAGTCTACTCCACTGCAAATT
CAAGGAGATAAGGCTGACAACTTCAATCTGCTCCAATATAACTTCAGGAAGATAAGATCTGCCAT
AATTTGTAACTTTAATATATTCCACTGCAACATCAAGGAAATAAGATTCGCTATCTTCGATCTGC
TCCACTGCAACTTCAAGGAAATAAGATCTACAACTTC
Found at i:119148020 original size:3 final size:3
Alignment explanation
Indices: 119148014--119148056 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
119148004 ACCAAACAAC
119148014 ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT A
1 ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT A
119148057 ATAATAATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.35, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ACT
Found at i:119148061 original size:3 final size:3
Alignment explanation
Indices: 119148055--119148086 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
119148045 CTACTACTAC
119148055 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
119148087 GAATATGCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:119149788 original size:21 final size:20
Alignment explanation
Indices: 119149739--119149793 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
119149729 TGAGAAATTG
* *
119149739 TTAAATTTTATT-TTTGGTCC
1 TTAAA-TTTATTATTTAGTCA
119149759 TTAAATTTATTATTTAGTCA
1 TTAAATTTATTATTTAGTCA
119149779 TTATAATTTATTATT
1 TTA-AATTTATTATT
119149794 AAATTATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
19 6 0.19
20 14 0.45
21 11 0.35
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.60
Consensus pattern (20 bp):
TTAAATTTATTATTTAGTCA
Found at i:119157228 original size:21 final size:21
Alignment explanation
Indices: 119157170--119157230 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 21
119157160 AGGAAATTTA
119157170 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGT-TTT-AGGCACCTCG
* *
119157193 TGTG-CTGTATCAGGCACCTCG
1 TGTGTC-GTTTTAGGCACCTCG
119157214 TGTGTCGTTTTAGGCAC
1 TGTGTCGTTTTAGGCAC
119157231 TTTATGTGTC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
21 23 0.72
22 3 0.09
23 6 0.19
ACGTcount: A:0.13, C:0.25, G:0.28, T:0.34
Consensus pattern (21 bp):
TGTGTCGTTTTAGGCACCTCG
Found at i:119165256 original size:23 final size:23
Alignment explanation
Indices: 119165174--119165260 Score: 65
Period size: 21 Copynumber: 4.0 Consensus size: 23
119165164 CCTAATCAGT
*
119165174 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* * * *
119165196 A-ACAACACACGAGGTGTCTG--
1 ATACGACACACAAAGTGCCTGAA
* * *
119165216 ATACGGCACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
119165239 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
119165261 TCAGTAAAGC
Statistics
Matches: 49, Mismatches: 12, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
20 1 0.02
21 29 0.59
22 1 0.02
23 18 0.37
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.16
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:119166554 original size:24 final size:24
Alignment explanation
Indices: 119166527--119166577 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
119166517 CATTCAATTA
119166527 AACCCCTATTTCATCATTTTATTC
1 AACCCCTATTTCATCATTTTATTC
119166551 AACCCCTATTTCATCATTTTATTC
1 AACCCCTATTTCATCATTTTATTC
119166575 AAC
1 AAC
119166578 ATAGACTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.27, C:0.29, G:0.00, T:0.43
Consensus pattern (24 bp):
AACCCCTATTTCATCATTTTATTC
Found at i:119171159 original size:2 final size:2
Alignment explanation
Indices: 119171152--119171180 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
119171142 CCATAAACAA
119171152 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
119171181 AATTTTTATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:119172443 original size:10 final size:10
Alignment explanation
Indices: 119172430--119172454 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
119172420 TTAAAAAAAA
119172430 ATAAAATATT
1 ATAAAATATT
119172440 ATAAAATATT
1 ATAAAATATT
119172450 ATAAA
1 ATAAA
119172455 GGTCATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
ATAAAATATT
Found at i:119179502 original size:15 final size:15
Alignment explanation
Indices: 119179475--119179512 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
119179465 AGCCCTTAAA
119179475 CCATAAA-CCATAAT
1 CCATAAACCCATAAT
*
119179489 CCCTAAACCCATAAT
1 CCATAAACCCATAAT
119179504 CCATAAACC
1 CCATAAACC
119179513 TTAAAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 6 0.29
15 15 0.71
ACGTcount: A:0.45, C:0.37, G:0.00, T:0.18
Consensus pattern (15 bp):
CCATAAACCCATAAT
Found at i:119179517 original size:22 final size:21
Alignment explanation
Indices: 119179468--119179575 Score: 69
Period size: 22 Copynumber: 5.0 Consensus size: 21
119179458 AAACCCCAGC
*
119179468 CCTTAAACCATAAACCATAAT
1 CCTTAAACCATAAACCATAAA
* *
119179489 CCCTAAACCCATAATCCATAAA
1 CCTTAAA-CCATAAACCATAAA
*
119179511 CCTTAAA--ATAATAACTCATACA
1 CCTTAAACCAT-A-AAC-CATAAA
* *
119179533 CTTTAAACTC-TAAACCATATA
1 CCTTAAAC-CATAAACCATAAA
* * *
119179554 CCCTAAATCATAAACCCTAAA
1 CCTTAAACCATAAACCATAAA
119179575 C
1 C
119179576 TATAATGATA
Statistics
Matches: 66, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
19 2 0.03
20 2 0.03
21 28 0.42
22 32 0.48
23 1 0.02
24 1 0.02
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (21 bp):
CCTTAAACCATAAACCATAAA
Found at i:119179565 original size:14 final size:14
Alignment explanation
Indices: 119179536--119179580 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
119179526 TCATACACTT
*
119179536 TAAACTCTAAACCA
1 TAAACCCTAAACCA
* *
119179550 TATACCCTAAATCA
1 TAAACCCTAAACCA
*
119179564 TAAACCCTAAACTA
1 TAAACCCTAAACCA
119179578 TAA
1 TAA
119179581 TGATAATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:119179816 original size:15 final size:14
Alignment explanation
Indices: 119179793--119179827 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
119179783 AAACCACCCT
*
119179793 TAAACCATAATCCC
1 TAAACCATAATCCA
119179807 TAAACTCATAATCCA
1 TAAAC-CATAATCCA
119179822 TAAACC
1 TAAACC
119179828 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACCATAATCCA
Found at i:119179832 original size:22 final size:21
Alignment explanation
Indices: 119179795--119179855 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
119179785 ACCACCCTTA
* * *
119179795 AACCATAATCCCTAAACTCAT
1 AACCATAAACCTTAAACTAAT
*
119179816 AATCCATAAACCTTAAAATAAT
1 AA-CCATAAACCTTAAACTAAT
*
119179838 AACTCATAAACATTAAAC
1 AAC-CATAAACCTTAAAC
119179856 CCTTAACCAT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
21 3 0.09
22 29 0.91
ACGTcount: A:0.51, C:0.25, G:0.00, T:0.25
Consensus pattern (21 bp):
AACCATAAACCTTAAACTAAT
Found at i:119180260 original size:40 final size:40
Alignment explanation
Indices: 119180178--119180284 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
119180168 TAAATTTTTT
* * *
119180178 GCGGCGTTTTTTGTAAAGCGCCGCTAAAGATCGAGCATTA
1 GCGGCGTTTTTTGAAAAGCGCCGCTAAAGATCAACCATTA
* *
119180218 GCGGCGTTTTTTGAAAAGCGCCGCTAAAGGTTAACC-TATA
1 GCGGCGTTTTTTGAAAAGCGCCGCTAAAGATCAACCAT-TA
**
119180258 GCGGTATTTTTT-AATAAGCGCCGCTAA
1 GCGGCGTTTTTTGAA-AAGCGCCGCTAA
119180285 TGCTCGTTCT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.05
40 55 0.95
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (40 bp):
GCGGCGTTTTTTGAAAAGCGCCGCTAAAGATCAACCATTA
Found at i:119180308 original size:40 final size:40
Alignment explanation
Indices: 119180178--119180326 Score: 113
Period size: 40 Copynumber: 3.7 Consensus size: 40
119180168 TAAATTTTTT
* * *
119180178 GCGGCGTTTTTT-GTAAAGCGCCGCTAAAGATCGAGCATTA
1 GCGGCGTTTTTTAAT-AAGCGCCGCTAAAGATCGACCTTTA
* ** *
119180218 GCGGCGTTTTTTGAA-AAGCGCCGCTAAAGGTTAACCTATA
1 GCGGCGTTTTTT-AATAAGCGCCGCTAAAGATCGACCTTTA
** * * **
119180258 GCGGTATTTTTTAATAAGCGCCGCTAATGCTCGTTCTTTA
1 GCGGCGTTTTTTAATAAGCGCCGCTAAAGATCGACCTTTA
* * *
119180298 GCGGCGTTTTTCATTCAAACGCCGCTAAA
1 GCGGCGTTTTTTAAT-AAGCGCCGCTAAA
119180327 AACCTGTTTT
Statistics
Matches: 83, Mismatches: 22, Indels: 7
0.74 0.20 0.06
Matches are distributed among these distances:
39 2 0.02
40 70 0.84
41 11 0.13
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (40 bp):
GCGGCGTTTTTTAATAAGCGCCGCTAAAGATCGACCTTTA
Found at i:119183414 original size:20 final size:22
Alignment explanation
Indices: 119183389--119183430 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
119183379 TAATTTTTCA
119183389 TAAAA-TTAATAAAAA-ATATT
1 TAAAATTTAATAAAAACATATT
*
119183409 TAAAATTTTATAAAAACATATT
1 TAAAATTTAATAAAAACATATT
119183431 AAATTCTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 9 0.47
22 5 0.26
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
TAAAATTTAATAAAAACATATT
Found at i:119183434 original size:20 final size:21
Alignment explanation
Indices: 119183389--119183446 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 21
119183379 TAATTTTTCA
*
119183389 TAAAATT-AATAAAAAATATT
1 TAAAATTCTATAAAAAATATT
*
119183409 TAAAATTTTATAAAAACATA-T
1 TAAAATTCTATAAAAA-ATATT
119183430 T-AAATTCTATAAAAAAT
1 TAAAATTCTATAAAAAAT
119183447 CATAAAAAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
19 2 0.06
20 20 0.59
21 9 0.26
22 3 0.09
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.36
Consensus pattern (21 bp):
TAAAATTCTATAAAAAATATT
Found at i:119184056 original size:16 final size:18
Alignment explanation
Indices: 119184031--119184067 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
119184021 TATATTAATC
119184031 TTAATATTTT-T-ATTTT
1 TTAATATTTTATAATTTT
*
119184047 TTAATTTTTTATAATTTT
1 TTAATATTTTATAATTTT
119184065 TTA
1 TTA
119184068 TAGGAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 9 0.50
17 1 0.06
18 8 0.44
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (18 bp):
TTAATATTTTATAATTTT
Found at i:119184801 original size:16 final size:16
Alignment explanation
Indices: 119184770--119184812 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
119184760 CACATGTAAT
* *
119184770 AAACACACAAATACAC
1 AAACACACACAGACAC
119184786 AAACACACACAGACAC
1 AAACACACACAGACAC
**
119184802 GCACACACACA
1 AAACACACACA
119184813 CGCAGACACT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.56, C:0.37, G:0.05, T:0.02
Consensus pattern (16 bp):
AAACACACACAGACAC
Found at i:119184806 original size:20 final size:20
Alignment explanation
Indices: 119184783--119184821 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
119184773 CACACAAATA
119184783 CACAAACACACACAGACACG
1 CACAAACACACACAGACACG
* *
119184803 CACACACACACGCAGACAC
1 CACAAACACACACAGACAC
119184822 TCTCTCTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.44, G:0.10, T:0.00
Consensus pattern (20 bp):
CACAAACACACACAGACACG
Done.