Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 381 of 433
Found at i:119186867 original size:16 final size:16
Alignment explanation
Indices: 119186846--119186880 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
119186836 GACCAAGTGC
119186846 TATTGATACCTGAACT
1 TATTGATACCTGAACT
119186862 TATTGATACCTGAACT
1 TATTGATACCTGAACT
119186878 TAT
1 TAT
119186881 GGCAGGTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.40
Consensus pattern (16 bp):
TATTGATACCTGAACT
Found at i:119197200 original size:14 final size:15
Alignment explanation
Indices: 119197173--119197214 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
119197163 TAAGCAAGCC
*
119197173 TATTAATTATAATT-
1 TATTAATTAAAATTA
*
119197187 TATTAATAAAAATTA
1 TATTAATTAAAATTA
*
119197202 TCTTAATTAAAAT
1 TATTAATTAAAAT
119197215 ATTTCAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
TATTAATTAAAATTA
Found at i:119197455 original size:2 final size:2
Alignment explanation
Indices: 119197448--119197474 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
119197438 ATGTAAAATA
119197448 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
119197475 AAATCAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:119197873 original size:31 final size:34
Alignment explanation
Indices: 119197838--119197901 Score: 89
Period size: 31 Copynumber: 2.0 Consensus size: 34
119197828 AAGTTGTTAA
*
119197838 TTATTTTATTTTAT-AT-AATAT-AAAATAATTT
1 TTATTTTATATTATAATGAATATAAAAATAATTT
*
119197869 TTATTTTATATTATAATGAATTTAAAAATAATT
1 TTATTTTATATTATAATGAATATAAAAATAATT
119197902 ACAAATTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 13 0.46
32 2 0.07
33 4 0.14
34 9 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (34 bp):
TTATTTTATATTATAATGAATATAAAAATAATTT
Found at i:119208643 original size:15 final size:15
Alignment explanation
Indices: 119208623--119208684 Score: 52
Period size: 15 Copynumber: 3.9 Consensus size: 15
119208613 AAACCCTATT
*
119208623 TTTCCTTTCTTTTTC
1 TTTCCTTTCTATTTC
119208638 TTTCCTTTCTATTTC
1 TTTCCTTTCTATTTC
* * *
119208653 GTTTTCATTCTCTGTTC
1 -TTTCCTTTCTAT-TTC
*
119208670 TTTCTTTTTCTATTT
1 TTTC-CTTTCTATTT
119208685 TGTTTCTTTT
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
15 14 0.39
16 14 0.39
17 8 0.22
ACGTcount: A:0.05, C:0.23, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTCCTTTCTATTTC
Found at i:119208724 original size:8 final size:8
Alignment explanation
Indices: 119208711--119208749 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
119208701 TTCAACTATT
119208711 TTATTATA
1 TTATTATA
119208719 TTATTATA
1 TTATTATA
* *
119208727 ATAATATA
1 TTATTATA
119208735 TTATTATA
1 TTATTATA
119208743 TATATTA
1 T-TATTA
119208750 AATATCTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
8 21 0.81
9 5 0.19
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (8 bp):
TTATTATA
Found at i:119213647 original size:49 final size:49
Alignment explanation
Indices: 119213575--119213673 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
119213565 TGTGTTAGGC
119213575 TTTACTTAGAATCCCCAATGATACTATAGCATTTGATTTAGGCTGCCAA
1 TTTACTTAGAATCCCCAATGATACTATAGCATTTGATTTAGGCTGCCAA
119213624 TTTACTTAGAATCCCCAATGATACTATAGCATTTGATTTAGGCTGCCAA
1 TTTACTTAGAATCCCCAATGATACTATAGCATTTGATTTAGGCTGCCAA
119213673 T
1 T
119213674 CAACTTAACT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.35
Consensus pattern (49 bp):
TTTACTTAGAATCCCCAATGATACTATAGCATTTGATTTAGGCTGCCAA
Found at i:119214482 original size:21 final size:21
Alignment explanation
Indices: 119214439--119214492 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
119214429 ACTTTCTTTT
* *
119214439 TTCTTA-TTTATTTTCCTCTC
1 TTCTTATTTTCTTTTCCTCCC
*
119214459 TTCTTATTTTCTTTTTCTCCC
1 TTCTTATTTTCTTTTCCTCCC
**
119214480 TTCTCCTTTTCTT
1 TTCTTATTTTCTT
119214493 CAAAATCAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.06, C:0.28, G:0.00, T:0.67
Consensus pattern (21 bp):
TTCTTATTTTCTTTTCCTCCC
Found at i:119216245 original size:80 final size:81
Alignment explanation
Indices: 119216084--119216232 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 81
119216074 TTTGTTTACC
*
119216084 TTATACATTAAAATATGAAATACATGAATATATGAGCTAACTATATGATCTTTTGTATCCTTATA
1 TTATACATTAAAATATGAAATACATGAATATATGAGCTAACTATATGATATTTTGTATCCTTATA
119216149 TTAAGGACAATTGATT
66 TTAAGGACAATTGATT
* * * * * * *
119216165 TTATA-ATTAAGATATGCAATCCATGAATATGTGAGTTGA-TTTAGTGATATTTTGTATCCTTAT
1 TTATACATTAAAATATGAAATACATGAATATATGAGCTAACTATA-TGATATTTTGTATCCTTAT
*
119216228 GTTAA
65 ATTAA
119216233 TGATGATTGA
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
79 3 0.05
80 50 0.86
81 5 0.09
ACGTcount: A:0.36, C:0.09, G:0.13, T:0.42
Consensus pattern (81 bp):
TTATACATTAAAATATGAAATACATGAATATATGAGCTAACTATATGATATTTTGTATCCTTATA
TTAAGGACAATTGATT
Found at i:119216392 original size:23 final size:23
Alignment explanation
Indices: 119216365--119216415 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
119216355 CAAGTTTTTT
119216365 GTGGCTATCAAGTTCCAACAGAA
1 GTGGCTATCAAGTTCCAACAGAA
119216388 GTGGCTATCAAGTTCCAACAGAA
1 GTGGCTATCAAGTTCCAACAGAA
119216411 GTGGC
1 GTGGC
119216416 CACTTCAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (23 bp):
GTGGCTATCAAGTTCCAACAGAA
Found at i:119225226 original size:13 final size:13
Alignment explanation
Indices: 119225208--119225247 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
119225198 CTCTTTGTCT
119225208 TTATTTTATTTTA
1 TTATTTTATTTTA
119225221 TTATTTTATTTCT-
1 TTATTTTATTT-TA
119225234 TTATTTT-TTTTA
1 TTATTTTATTTTA
119225246 TT
1 TT
119225248 CTTAATTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 1 0.04
12 5 0.20
13 18 0.72
14 1 0.04
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (13 bp):
TTATTTTATTTTA
Found at i:119225336 original size:22 final size:22
Alignment explanation
Indices: 119225311--119225364 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
119225301 TTATCTACTT
119225311 GTTTTCTTTTGCTTTGATTTTA
1 GTTTTCTTTTGCTTTGATTTTA
119225333 GTTTTCTTTTGCTTTGATTTTA
1 GTTTTCTTTTGCTTTGATTTTA
119225355 GTTTTCTTTT
1 GTTTTCTTTT
119225365 CAATTCTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.07, C:0.09, G:0.13, T:0.70
Consensus pattern (22 bp):
GTTTTCTTTTGCTTTGATTTTA
Found at i:119227023 original size:6 final size:6
Alignment explanation
Indices: 119227012--119227041 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
119227002 AGTTTATTTG
119227012 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
119227042 CGTCTTAGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:119227310 original size:21 final size:21
Alignment explanation
Indices: 119227266--119227318 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
119227256 TCCCTCTCTT
119227266 ATGATATTATGTTTATACTATG
1 ATGATA-TATGTTTATACTATG
* *
119227288 ATTATATATGTTTGTAC-ATTG
1 ATGATATATGTTTATACTA-TG
119227309 ATGATA-ATGT
1 ATGATATATGT
119227319 ATGATTGAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 5 0.19
21 17 0.63
22 5 0.19
ACGTcount: A:0.32, C:0.04, G:0.15, T:0.49
Consensus pattern (21 bp):
ATGATATATGTTTATACTATG
Found at i:119230225 original size:14 final size:14
Alignment explanation
Indices: 119230194--119230233 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
119230184 ATGAGTCTTC
119230194 AAAAATAAATAGAAAT
1 AAAAATAAA-A-AAAT
*
119230210 AAAAGTAAAAAAAT
1 AAAAATAAAAAAAT
119230224 AAAAATAAAA
1 AAAAATAAAA
119230234 CGAGTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 13 0.59
15 1 0.05
16 8 0.36
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (14 bp):
AAAAATAAAAAAAT
Found at i:119230229 original size:20 final size:21
Alignment explanation
Indices: 119230195--119230233 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
119230185 TGAGTCTTCA
*
119230195 AAAATAAATAGAAATAAAAGT
1 AAAATAAATAAAAATAAAAGT
119230216 AAAA-AAATAAAAATAAAA
1 AAAATAAATAAAAATAAAA
119230234 CGAGTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.15
Consensus pattern (21 bp):
AAAATAAATAAAAATAAAAGT
Found at i:119237344 original size:21 final size:23
Alignment explanation
Indices: 119237307--119237349 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
119237297 AGTATTTTAA
*
119237307 TTTTTAAATCAACATT-CAAAAT
1 TTTTTAAATCAAAATTCCAAAAT
119237329 TTTTTAAAT-AAAATTCCAAAA
1 TTTTTAAATCAAAATTCCAAAA
119237350 CATAAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.40
Consensus pattern (23 bp):
TTTTTAAATCAAAATTCCAAAAT
Found at i:119239871 original size:11 final size:11
Alignment explanation
Indices: 119239851--119239933 Score: 67
Period size: 11 Copynumber: 7.5 Consensus size: 11
119239841 TGGTGCTGTT
* *
119239851 TTTTTGTGCTG
1 TTTTGGTGCTA
*
119239862 TTTTGTTGCTA
1 TTTTGGTGCTA
* *
119239873 TTTTGGAGCTG
1 TTTTGGTGCTA
*
119239884 TTTTGGAGCTA
1 TTTTGGTGCTA
*
119239895 TTTTGATGCTA
1 TTTTGGTGCTA
* *
119239906 TTTTGGTGTTG
1 TTTTGGTGCTA
*
119239917 TTTTAGTGCTA
1 TTTTGGTGCTA
119239928 CTTTTG
1 -TTTTG
119239934 TGGTGTTTTA
Statistics
Matches: 55, Mismatches: 16, Indels: 1
0.76 0.22 0.01
Matches are distributed among these distances:
11 51 0.93
12 4 0.07
ACGTcount: A:0.10, C:0.08, G:0.25, T:0.57
Consensus pattern (11 bp):
TTTTGGTGCTA
Found at i:119239920 original size:22 final size:22
Alignment explanation
Indices: 119239901--119239943 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
119239891 GCTATTTTGA
*
119239901 TGCTA-TTTTGGTGTTGTTTTAG
1 TGCTACTTTT-GTGGTGTTTTAG
119239923 TGCTACTTTTGTGGTGTTTTA
1 TGCTACTTTTGTGGTGTTTTA
119239944 TTGTTCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.09, C:0.07, G:0.26, T:0.58
Consensus pattern (22 bp):
TGCTACTTTTGTGGTGTTTTAG
Found at i:119240544 original size:26 final size:25
Alignment explanation
Indices: 119240515--119240574 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
119240505 TTAAAAGTTT
119240515 ATAAAAATAGGGATAAATATATAAAA
1 ATAAAAATAGGGA-AAATATATAAAA
* * *
119240541 ATAAAATATATGTAAAATATCTAAAA
1 ATAAAA-ATAGGGAAAATATATAAAA
119240567 ATATAAAA
1 ATA-AAAA
119240575 AATTATCAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 21 0.72
27 8 0.28
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.27
Consensus pattern (25 bp):
ATAAAAATAGGGAAAATATATAAAA
Found at i:119243141 original size:22 final size:22
Alignment explanation
Indices: 119243116--119243157 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
119243106 TAAGATAATT
119243116 TTAAAAAACAAAT-AATAAAATC
1 TTAAAAAA-AAATGAATAAAATC
*
119243138 TTAAATAAAAATGAATAAAA
1 TTAAAAAAAAATGAATAAAA
119243158 GCATAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.69, C:0.05, G:0.02, T:0.24
Consensus pattern (22 bp):
TTAAAAAAAAATGAATAAAATC
Found at i:119243164 original size:22 final size:21
Alignment explanation
Indices: 119243125--119243167 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
119243115 TTTAAAAAAC
* *
119243125 AAATAATAAAATCTTAAATAA
1 AAATAATAAAAGCATAAATAA
119243146 AAATGAATAAAAGCATAAATAA
1 AAAT-AATAAAAGCATAAATAA
119243168 GTAAATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.23
Consensus pattern (21 bp):
AAATAATAAAAGCATAAATAA
Found at i:119244854 original size:179 final size:175
Alignment explanation
Indices: 119244548--119244867 Score: 421
Period size: 179 Copynumber: 1.8 Consensus size: 175
119244538 TGCGTCCTCC
** * *
119244548 AATCTTCAATCTTCAGTCTACTTCCTTGCTACCTCAGGTTGATAAGACTACAATCGCTGCTCTTT
1 AATCTTCAATCTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTACAATCCCTGCTCTCT
* *
119244613 TGCTACCTCAGAGAGATAAAGTCAGTGGCTAAAATCTGTTCCATCGCCAATAAATGGAGATAAGA
66 TGCTACCTCAGAGAGATAAAGTCAGTGGCTAAAATCTGTCCCATCGCCAATAAATAGAGATAAGA
119244678 TTCACCATCTGCGAAGATTTCTCCGCTGCAATCTCAGGGAGATAA
131 TTCACCATCTGCGAAGATTTCTCCGCTGCAATCTCAGGGAGATAA
** **
119244723 AATCTTCAAT-TCTCAGTCTGTTTCCTTGCTACCTCAGGAAGATAAGACTCACTCTTCAACCTGC
1 AATCTTCAATCT-TCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACT-AC-AATC--CCTGC
* * * * *
119244787 TCTCTTGCTACCTCAGAGAGAT-AAGGCTAGTGGCTAAACTCT-TCCCCATTGCCGATACATAGA
61 TCTCTTGCTACCTCAGAGAGATAAAGTC-AGTGGCTAAAATCTGT-CCCATCGCCAATAAATAGA
119244850 GATAAGATTCACCATCTG
124 GATAAGATTCACCATCTG
119244868 TAATTTGTTC
Statistics
Matches: 123, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
174 1 0.01
175 43 0.35
176 2 0.02
177 2 0.02
178 5 0.04
179 70 0.57
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (175 bp):
AATCTTCAATCTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTACAATCCCTGCTCTCT
TGCTACCTCAGAGAGATAAAGTCAGTGGCTAAAATCTGTCCCATCGCCAATAAATAGAGATAAGA
TTCACCATCTGCGAAGATTTCTCCGCTGCAATCTCAGGGAGATAA
Found at i:119245378 original size:45 final size:45
Alignment explanation
Indices: 119245329--119245417 Score: 106
Period size: 45 Copynumber: 2.0 Consensus size: 45
119245319 TAAGACCTGC
* *
119245329 AATCTTCAACCTACTCCACTGCCACTTCAGGGAGATAAGGTTTGT
1 AATCTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGATTTGT
** * * * *
119245374 AATCTTTGATCTATTCCGCTGCAACTTCAGGGATATAAGATTTG
1 AATCTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGATTTG
119245418 ACTTCACCGA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (45 bp):
AATCTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGATTTGT
Found at i:119245635 original size:64 final size:64
Alignment explanation
Indices: 119245494--119245716 Score: 315
Period size: 55 Copynumber: 3.7 Consensus size: 64
119245484 TTATGCCAAC
* *
119245494 TAATTAGGATGCTATGATTAAAATGAATCAAATACTCCTAACTAGA--TGATGCTGATGTCAAA
1 TAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTGATGCTGATGTCAAA
* *
119245556 TAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAAATGTGATGCTTATGTCAAA
1 TAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTGATGCTGATGTCAAA
* *
119245620 TAATTA--A-G--ATG--C--TATGAATCAAATGCCCCTAACTAGATGTGATGCTGATGTCAAA
1 TAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTGATGCTGATGTCAAA
119245675 TAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAAC
1 TAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAAC
119245717 ATGTTATGAA
Statistics
Matches: 140, Mismatches: 10, Indels: 20
0.82 0.06 0.12
Matches are distributed among these distances:
55 45 0.32
57 2 0.01
58 1 0.01
59 3 0.02
60 3 0.02
61 1 0.01
62 45 0.32
64 40 0.29
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (64 bp):
TAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTGATGCTGATGTCAAA
Found at i:119245779 original size:17 final size:17
Alignment explanation
Indices: 119245757--119245793 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
119245747 GAAAATAATC
* *
119245757 TTTTTTGAATGATCTTT
1 TTTTTTAAATGATATTT
119245774 TTTTTTAAATGATATTT
1 TTTTTTAAATGATATTT
119245791 TTT
1 TTT
119245794 AAATGCTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.22, C:0.03, G:0.08, T:0.68
Consensus pattern (17 bp):
TTTTTTAAATGATATTT
Found at i:119246890 original size:12 final size:12
Alignment explanation
Indices: 119246858--119246896 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
119246848 TGATTCTTTC
119246858 TCTTTTTTTATTT
1 TCTTTTTTTA-TT
*
119246871 TTTCTTTTTTATT
1 TCT-TTTTTTATT
119246884 TCTTTTTTTATT
1 TCTTTTTTTATT
119246896 T
1 T
119246897 TATTATTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 10 0.43
13 6 0.26
14 7 0.30
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (12 bp):
TCTTTTTTTATT
Found at i:119246908 original size:26 final size:26
Alignment explanation
Indices: 119246858--119246910 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
119246848 TGATTCTTTC
* *
119246858 TCTTTTTTTATTTTTTCTTTTTTATT
1 TCTTTTTTTATTTTTTCATTATTATT
119246884 TCTTTTTTTATTTTATT-ATTATTATT
1 TCTTTTTTTATTTT-TTCATTATTATT
119246910 T
1 T
119246911 TTTCAAGGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (26 bp):
TCTTTTTTTATTTTTTCATTATTATT
Found at i:119247442 original size:25 final size:25
Alignment explanation
Indices: 119247409--119247467 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
119247399 TCACTATGAC
*
119247409 TTTTGTTCTATTATTTG-CTTTTCTT
1 TTTTTTTCTATT-TTTGACTTTTCTT
*
119247434 TTTTTTTCTATTTTTGAACTTTTGTT
1 TTTTTTTCTATTTTTG-ACTTTTCTT
119247460 TTTCTTTT
1 TTT-TTTT
119247468 TGAATGCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 4 0.14
25 11 0.38
26 10 0.34
27 4 0.14
ACGTcount: A:0.08, C:0.10, G:0.07, T:0.75
Consensus pattern (25 bp):
TTTTTTTCTATTTTTGACTTTTCTT
Found at i:119247467 original size:20 final size:20
Alignment explanation
Indices: 119247431--119247471 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
119247421 ATTTGCTTTT
119247431 CTTTTTTTTTCTATTTTTGAA
1 CTTTTTTTTTC-ATTTTTGAA
119247452 CTTTTGTTTTTC-TTTTTGAA
1 CTTTT-TTTTTCATTTTTGAA
119247472 TGCCTTTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.42
21 5 0.26
22 6 0.32
ACGTcount: A:0.12, C:0.10, G:0.07, T:0.71
Consensus pattern (20 bp):
CTTTTTTTTTCATTTTTGAA
Found at i:119253011 original size:22 final size:22
Alignment explanation
Indices: 119252986--119253027 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
119252976 TAAGATAATT
119252986 TTAAAAAACAAAT-AATAAAATC
1 TTAAAAAA-AAATGAATAAAATC
*
119253008 TTAAATAAAAATGAATAAAA
1 TTAAAAAAAAATGAATAAAA
119253028 GCATAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.69, C:0.05, G:0.02, T:0.24
Consensus pattern (22 bp):
TTAAAAAAAAATGAATAAAATC
Found at i:119253034 original size:22 final size:21
Alignment explanation
Indices: 119252995--119253037 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
119252985 TTTAAAAAAC
* *
119252995 AAATAATAAAATCTTAAATAA
1 AAATAATAAAAGCATAAATAA
119253016 AAATGAATAAAAGCATAAATAA
1 AAAT-AATAAAAGCATAAATAA
119253038 GTAAATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.23
Consensus pattern (21 bp):
AAATAATAAAAGCATAAATAA
Found at i:119256389 original size:17 final size:16
Alignment explanation
Indices: 119256363--119256394 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
119256353 TCTTATTGTT
119256363 AAAAAAATCGAAAAAA
1 AAAAAAATCGAAAAAA
119256379 AAAAGAAATCGAAAAA
1 AAAA-AAATCGAAAAA
119256395 TATATATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.78, C:0.06, G:0.09, T:0.06
Consensus pattern (16 bp):
AAAAAAATCGAAAAAA
Found at i:119256931 original size:15 final size:15
Alignment explanation
Indices: 119256911--119256942 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
119256901 CAATGCATGA
119256911 TTATTTATGGATTAT
1 TTATTTATGGATTAT
119256926 TTATTTATGGATTAT
1 TTATTTATGGATTAT
119256941 TT
1 TT
119256943 TGAGACATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62
Consensus pattern (15 bp):
TTATTTATGGATTAT
Found at i:119258642 original size:29 final size:29
Alignment explanation
Indices: 119258609--119258665 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
119258599 TATTATATCT
119258609 AGTGTATTTGTAATATAATTACTTTATTA
1 AGTGTATTTGTAATATAATTACTTTATTA
119258638 AGTGTATTTGTAATATAATTACTTTATT
1 AGTGTATTTGTAATATAATTACTTTATT
119258666 TATATCAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.04, G:0.11, T:0.53
Consensus pattern (29 bp):
AGTGTATTTGTAATATAATTACTTTATTA
Found at i:119267571 original size:13 final size:13
Alignment explanation
Indices: 119267555--119267592 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
119267545 TTAATGATGA
119267555 TTATATTTTGTTT
1 TTATATTTTGTTT
*
119267568 TTATCTTTT-TTT
1 TTATATTTTGTTT
*
119267580 TAATATTTTGTTT
1 TTATATTTTGTTT
119267593 ATTTTTAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.16, C:0.03, G:0.05, T:0.76
Consensus pattern (13 bp):
TTATATTTTGTTT
Found at i:119268517 original size:15 final size:14
Alignment explanation
Indices: 119268465--119268524 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 14
119268455 TCAATAGGTG
119268465 TATCTTTTCATAAGA
1 TATCTTTT-ATAAGA
*
119268480 TA-CTTTTTATATGGA
1 TATC-TTTTATA-AGA
119268495 TGTATCTTTTAATAAGA
1 --TATCTTTT-ATAAGA
119268512 TATCTTTTATAAG
1 TATCTTTTATAAG
119268525 GTTGTAATGT
Statistics
Matches: 37, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
14 9 0.24
15 16 0.43
17 8 0.22
18 4 0.11
ACGTcount: A:0.32, C:0.08, G:0.10, T:0.50
Consensus pattern (14 bp):
TATCTTTTATAAGA
Found at i:119268542 original size:32 final size:32
Alignment explanation
Indices: 119268463--119268530 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 32
119268453 ATTCAATAGG
* *
119268463 TGTATCTTTTCATAAGATACTTTTTATATGGA
1 TGTATCTTTTAATAAGATACTTTTTATAAGGA
*
119268495 TGTATCTTTTAATAAGATA-TCTTTTATAAGGT
1 TGTATCTTTTAATAAGATACT-TTTTATAAGGA
119268527 TGTA
1 TGTA
119268531 ATGTTTTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
31 1 0.03
32 31 0.97
ACGTcount: A:0.29, C:0.07, G:0.13, T:0.50
Consensus pattern (32 bp):
TGTATCTTTTAATAAGATACTTTTTATAAGGA
Found at i:119275907 original size:24 final size:24
Alignment explanation
Indices: 119275875--119275924 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
119275865 GTCTCAAACA
119275875 TACTCATAAGCAATTGAATACCTT
1 TACTCATAAGCAATTGAATACCTT
119275899 TACTCATAAGCAATTGAATACCTT
1 TACTCATAAGCAATTGAATACCTT
119275923 TA
1 TA
119275925 TTTTCGTGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (24 bp):
TACTCATAAGCAATTGAATACCTT
Found at i:119279240 original size:14 final size:13
Alignment explanation
Indices: 119279215--119279239 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
119279205 GTTTATTTAT
119279215 TTCAATTTTTTTC
1 TTCAATTTTTTTC
119279228 TTCAATTTTTTT
1 TTCAATTTTTTT
119279240 TATCTAACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (13 bp):
TTCAATTTTTTTC
Found at i:119293236 original size:18 final size:18
Alignment explanation
Indices: 119293213--119293250 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
119293203 CTTTTGTTGC
*
119293213 TTTTCCATTTGTTTTTAT
1 TTTTCCATTTATTTTTAT
*
119293231 TTTTCCTTTTATTTTTAT
1 TTTTCCATTTATTTTTAT
119293249 TT
1 TT
119293251 CTATTTCCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.11, G:0.03, T:0.76
Consensus pattern (18 bp):
TTTTCCATTTATTTTTAT
Found at i:119294586 original size:19 final size:19
Alignment explanation
Indices: 119294545--119294587 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
119294535 CTTTTTGGAA
*
119294545 AGTTTTAATTCTAGTACTT
1 AGTTTTAATTCTAGTAATT
119294564 -GTTTGTAATT-TAGTAATT
1 AGTTT-TAATTCTAGTAATT
119294582 AGTTTT
1 AGTTTT
119294588 TTTTTCTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.26, C:0.05, G:0.14, T:0.56
Consensus pattern (19 bp):
AGTTTTAATTCTAGTAATT
Found at i:119299206 original size:26 final size:26
Alignment explanation
Indices: 119299177--119299229 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
119299167 TGCATAAATT
*
119299177 GGGCATCGAGGGTCTATTCAACGGAC
1 GGGCATCGAGGGTCCATTCAACGGAC
*
119299203 GGGCATCGAGGGTCCATTCAAGGGAC
1 GGGCATCGAGGGTCCATTCAACGGAC
119299229 G
1 G
119299230 ATATGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.38, T:0.17
Consensus pattern (26 bp):
GGGCATCGAGGGTCCATTCAACGGAC
Found at i:119299537 original size:35 final size:35
Alignment explanation
Indices: 119299491--119299562 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
119299481 GGAACGTAAG
119299491 TATGACACAGAGCCTGTTGAGAAGTTTTCGTCTAC
1 TATGACACAGAGCCTGTTGAGAAGTTTTCGTCTAC
119299526 TATGACACAGAGCCTGTTGAGAAGTTTTCGTCTAC
1 TATGACACAGAGCCTGTTGAGAAGTTTTCGTCTAC
119299561 TA
1 TA
119299563 CTATCATTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32
Consensus pattern (35 bp):
TATGACACAGAGCCTGTTGAGAAGTTTTCGTCTAC
Found at i:119301454 original size:17 final size:17
Alignment explanation
Indices: 119301432--119301476 Score: 90
Period size: 17 Copynumber: 2.6 Consensus size: 17
119301422 TGTGATGAAG
119301432 AAGCAATTCTTGTTGTT
1 AAGCAATTCTTGTTGTT
119301449 AAGCAATTCTTGTTGTT
1 AAGCAATTCTTGTTGTT
119301466 AAGCAATTCTT
1 AAGCAATTCTT
119301477 ACTATTTAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.44
Consensus pattern (17 bp):
AAGCAATTCTTGTTGTT
Found at i:119302672 original size:91 final size:91
Alignment explanation
Indices: 119302493--119302687 Score: 232
Period size: 91 Copynumber: 2.1 Consensus size: 91
119302483 GAGGTTCTTG
* * * * * *
119302493 CGTGTTATCAATT-GAAAAGCTTTTATGAGCAATTTGGCATGTTATCAGGGGAGAATATTTAGCC
1 CGTGTTATCAGTTAG-AAAGATCTTATGAGAAATTTGGCATGTTACCAGGGAAGAATATTTAGCC
* **
119302557 TACGAGCTTTGTACTATGCACATCTGG
65 TACGAGCTTTGCACTATGCACATCTAA
*
119302584 TGTGTTATCAGTTAGAAAGATCTTATGAGAAATTTGGCATGTTACC-GAGGAAGAATATTTAGCC
1 CGTGTTATCAGTTAGAAAGATCTTATGAGAAATTTGGCATGTTACCAG-GGAAGAATATTTAGCC
* * **
119302648 TATGGGCTTTGCACTATGTGCATCTAA
65 TACGAGCTTTGCACTATGCACATCTAA
119302675 CGTGTTATCAGTT
1 CGTGTTATCAGTT
119302688 GGAATAACTC
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
90 1 0.01
91 85 0.98
92 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (91 bp):
CGTGTTATCAGTTAGAAAGATCTTATGAGAAATTTGGCATGTTACCAGGGAAGAATATTTAGCCT
ACGAGCTTTGCACTATGCACATCTAA
Found at i:119309629 original size:18 final size:17
Alignment explanation
Indices: 119309590--119309631 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
119309580 TAATTTTAAA
*
119309590 ATATATT-TACAAATTC
1 ATATATTATAAAAATTC
*
119309606 AAATATTATAAAAATTAC
1 ATATATTATAAAAATT-C
119309624 ATATATTA
1 ATATATTA
119309632 AACCCCATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 6 0.29
17 7 0.33
18 8 0.38
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATATTATAAAAATTC
Found at i:119310106 original size:16 final size:16
Alignment explanation
Indices: 119310055--119310113 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
119310045 AAATTATAAA
*
119310055 AATAAAAATACCAAAATA
1 AATAAAAATA--AAAATT
* *
119310073 AATCAAAATCAAAATT
1 AATAAAAATAAAAATT
119310089 AA-AAAAATAAAAAGTT
1 AATAAAAATAAAAA-TT
119310105 AATAAAAAT
1 AATAAAAAT
119310114 TCAAAAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
15 9 0.26
16 11 0.32
17 6 0.18
18 8 0.24
ACGTcount: A:0.71, C:0.07, G:0.02, T:0.20
Consensus pattern (16 bp):
AATAAAAATAAAAATT
Found at i:119310945 original size:2 final size:2
Alignment explanation
Indices: 119310938--119310980 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
119310928 TATTTTGGAG
119310938 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
119310980 A
1 A
119310981 AGGAATAATG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:119312444 original size:21 final size:21
Alignment explanation
Indices: 119312405--119312444 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
119312395 AATTTTTAAG
* *
119312405 ATTTTGAATGATTGTTGATGA
1 ATTTTGAAAGATTGATGATGA
*
119312426 ATTTTGAAAGCTTGATGAT
1 ATTTTGAAAGATTGATGAT
119312445 AGATTATAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.03, G:0.23, T:0.45
Consensus pattern (21 bp):
ATTTTGAAAGATTGATGATGA
Found at i:119313061 original size:43 final size:43
Alignment explanation
Indices: 119313012--119313158 Score: 129
Period size: 43 Copynumber: 3.4 Consensus size: 43
119313002 TATCTAGTTG
* *
119313012 TGATTACATGTAAGACCATGTTTGGGACATTAGCATTGTATTA
1 TGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTATTA
* * ** *
119313055 TGATTACGTGTAAGATCATGTCAGGGGCATTGGCATCGTA-TA
1 TGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTATTA
* * * * * *
119313097 TTGATT-CGTTTAAGACCCTGTTTGGGATAGTGGCATCG-ATATG
1 -TGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTAT-TA
*
119313140 TGATAACATGTAAGACCAT
1 TGATTACATGTAAGACCAT
119313159 ATCTGGGATA
Statistics
Matches: 80, Mismatches: 20, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
41 1 0.01
42 30 0.38
43 49 0.61
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTATTA
Found at i:119321257 original size:56 final size:56
Alignment explanation
Indices: 119321171--119321282 Score: 197
Period size: 56 Copynumber: 2.0 Consensus size: 56
119321161 ATGAATTCCG
119321171 TGAACCACTTACTCATCATTTAGAAGAAGTCTTGCTTAGCCTCTCCCCCTTGGCTA
1 TGAACCACTTACTCATCATTTAGAAGAAGTCTTGCTTAGCCTCTCCCCCTTGGCTA
* * *
119321227 TGAACCTCTTACTCATCATTTAGAAGAAGTCTTGCTTAGCCTGTCCCCTTTGGCTA
1 TGAACCACTTACTCATCATTTAGAAGAAGTCTTGCTTAGCCTCTCCCCCTTGGCTA
119321283 CTCGAAATAG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.34
Consensus pattern (56 bp):
TGAACCACTTACTCATCATTTAGAAGAAGTCTTGCTTAGCCTCTCCCCCTTGGCTA
Found at i:119323184 original size:40 final size:40
Alignment explanation
Indices: 119323133--119323226 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 40
119323123 CTTGTTATCA
* * *
119323133 CACACTTAGTGCCACATATAGCCGAAGCTAT-TCCAACTCT
1 CACACTAAGTGCCACATATAGCCGAAGCTATCTCCAA-ACG
* * *
119323173 CACACTAAGTGCTATATATAGCCGAAGCTATCTCGAAACG
1 CACACTAAGTGCCACATATAGCCGAAGCTATCTCCAAACG
119323213 CACACTAAGTGCCA
1 CACACTAAGTGCCA
119323227 AACATAATTG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
40 42 0.91
41 4 0.09
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.22
Consensus pattern (40 bp):
CACACTAAGTGCCACATATAGCCGAAGCTATCTCCAAACG
Found at i:119326954 original size:17 final size:17
Alignment explanation
Indices: 119326932--119326966 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
119326922 AACCATGGAA
*
119326932 GATGGAATTTTATGAAG
1 GATGGAATTCTATGAAG
119326949 GATGGAATTCTATGAAG
1 GATGGAATTCTATGAAG
119326966 G
1 G
119326967 CACACTATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.03, G:0.31, T:0.31
Consensus pattern (17 bp):
GATGGAATTCTATGAAG
Found at i:119346253 original size:26 final size:26
Alignment explanation
Indices: 119346217--119346277 Score: 122
Period size: 26 Copynumber: 2.3 Consensus size: 26
119346207 TGGGTGAATA
119346217 TTCCATGATAATGGGTTAGGTAAATG
1 TTCCATGATAATGGGTTAGGTAAATG
119346243 TTCCATGATAATGGGTTAGGTAAATG
1 TTCCATGATAATGGGTTAGGTAAATG
119346269 TTCCATGAT
1 TTCCATGAT
119346278 GGGCATTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.36
Consensus pattern (26 bp):
TTCCATGATAATGGGTTAGGTAAATG
Found at i:119349317 original size:16 final size:16
Alignment explanation
Indices: 119349296--119349327 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
119349286 TATATAAGAA
119349296 AGGTTTTTATTGCTTT
1 AGGTTTTTATTGCTTT
119349312 AGGTTTTTATTGCTTT
1 AGGTTTTTATTGCTTT
119349328 TTTTTATAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.19, T:0.62
Consensus pattern (16 bp):
AGGTTTTTATTGCTTT
Found at i:119358689 original size:38 final size:38
Alignment explanation
Indices: 119358630--119358737 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
119358620 TCAATCATGC
* *
119358630 ACTGGGCCGTAGCCCTTTTCATATTTTATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
119358669 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
119358707 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
119358738 ACTGGGCCGA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 54 0.83
39 11 0.17
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.41
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:119358726 original size:31 final size:31
Alignment explanation
Indices: 119358691--119358754 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
119358681 CCTTTTCATG
119358691 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
119358722 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
119358753 TT
1 TT
119358755 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:119358992 original size:24 final size:24
Alignment explanation
Indices: 119358946--119359017 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
119358936 GCTTTATCAT
*
119358946 ATAACTGGAGGCC-TAGCCTCTTTTA
1 ATAACTGG-GGCCAAAGCC-CTTTTA
*
119358971 ATAACTGGGGCCAAAGCCCTTTCA
1 ATAACTGGGGCCAAAGCCCTTTTA
119358995 ATAACTGGGG-CATAAGCCCTTTT
1 ATAACTGGGGCCA-AAGCCCTTTT
119359018 TCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
23 2 0.05
24 28 0.67
25 12 0.29
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCCAAAGCCCTTTTA
Found at i:119359093 original size:20 final size:20
Alignment explanation
Indices: 119359068--119359127 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
119359058 TATGATTACC
119359068 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
119359088 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
119359108 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
119359128 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:119359202 original size:25 final size:25
Alignment explanation
Indices: 119359170--119359217 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
119359160 ATACATAAAC
* * *
119359170 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
119359195 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
119359218 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:119362504 original size:6 final size:6
Alignment explanation
Indices: 119362495--119362520 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
119362485 AACAAAACAT
119362495 AAAAGA AAAAGA AAAAGA AAAAGA AA
1 AAAAGA AAAAGA AAAAGA AAAAGA AA
119362521 GAACATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:119363360 original size:16 final size:15
Alignment explanation
Indices: 119363310--119363361 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
119363300 TTATATACTT
*
119363310 ATGAATTGAGTATGGT
1 ATGAATTGAGTAT-GC
* *
119363326 ATGAAATGATGTATTC
1 ATGAATTGA-GTATGC
119363342 ATGAATTGAGTACTGC
1 ATGAATTGAGTA-TGC
119363358 ATGA
1 ATGA
119363362 CTGATGCCAT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
15 3 0.10
16 22 0.76
17 4 0.14
ACGTcount: A:0.35, C:0.06, G:0.25, T:0.35
Consensus pattern (15 bp):
ATGAATTGAGTATGC
Found at i:119367175 original size:39 final size:39
Alignment explanation
Indices: 119367073--119367373 Score: 446
Period size: 39 Copynumber: 7.7 Consensus size: 39
119367063 TAATTGAGGA
* * * *
119367073 TTATAACCGGGCTAAGACCCGCAGGCCTT-GTG-TGAGAT-
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTG-G-TG
119367111 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
119367150 TTATGTCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
119367189 TTATGTCCGGGCTAAGTCCCAAAGGCATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
119367228 TTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
119367267 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
119367306 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
119367345 TTATATCCGGGCTAAGTTCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
119367374 TGTGTTGGAA
Statistics
Matches: 245, Mismatches: 15, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
38 26 0.11
39 217 0.89
40 2 0.01
ACGTcount: A:0.19, C:0.22, G:0.30, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:119371573 original size:40 final size:40
Alignment explanation
Indices: 119371423--119371590 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
119371413 CGGAATACAA
* * *
119371423 CCGGATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGC
* ** *
119371463 CCGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
119371503 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
119371543 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
119371583 CCGGATAT
1 CCGGATAT
119371591 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:119372846 original size:20 final size:20
Alignment explanation
Indices: 119372821--119372858 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
119372811 GGATGAACAC
119372821 TTTTCTTCCTTTCTTTTTTT
1 TTTTCTTCCTTTCTTTTTTT
* *
119372841 TTTTCTTTCTTTGTTTTT
1 TTTTCTTCCTTTCTTTTT
119372859 GTTTCTCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.82
Consensus pattern (20 bp):
TTTTCTTCCTTTCTTTTTTT
Found at i:119372848 original size:16 final size:18
Alignment explanation
Indices: 119372829--119372864 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
119372819 ACTTTTCTTC
119372829 CTTTCTTT-TTTTT-TTT
1 CTTTCTTTGTTTTTGTTT
119372845 CTTTCTTTGTTTTTGTTT
1 CTTTCTTTGTTTTTGTTT
119372863 CT
1 CT
119372865 CTCATGTACG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 5 0.28
18 5 0.28
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.81
Consensus pattern (18 bp):
CTTTCTTTGTTTTTGTTT
Found at i:119379600 original size:40 final size:40
Alignment explanation
Indices: 119379450--119379617 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
119379440 CGGAATACAA
* * *
119379450 CCGGATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGC
* ** *
119379490 CCGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
119379530 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
119379570 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
119379610 CCGGATAT
1 CCGGATAT
119379618 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:119380876 original size:17 final size:18
Alignment explanation
Indices: 119380856--119380892 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
119380846 ACTTTTCTTC
*
119380856 CTTTCTTT-TTTTTTTTT
1 CTTTCTTTGTTTTTGTTT
119380873 CTTTCTTTGTTTTTGTTT
1 CTTTCTTTGTTTTTGTTT
119380891 CT
1 CT
119380893 CTCATGTACG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.00, C:0.14, G:0.05, T:0.81
Consensus pattern (18 bp):
CTTTCTTTGTTTTTGTTT
Found at i:119387646 original size:40 final size:40
Alignment explanation
Indices: 119387496--119387663 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
119387486 CGGAATACAA
* * *
119387496 CCGGATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGC
* ** *
119387536 CCGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
119387576 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
119387616 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
119387656 CCGGATAT
1 CCGGATAT
119387664 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:119388919 original size:20 final size:20
Alignment explanation
Indices: 119388894--119388931 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
119388884 GGATGAACAC
119388894 TTTTCTTCCTTTCTTTTTTT
1 TTTTCTTCCTTTCTTTTTTT
* *
119388914 TTTTCTTTCTTTGTTTTT
1 TTTTCTTCCTTTCTTTTT
119388932 GTTTCTCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.82
Consensus pattern (20 bp):
TTTTCTTCCTTTCTTTTTTT
Found at i:119388921 original size:16 final size:18
Alignment explanation
Indices: 119388902--119388937 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
119388892 ACTTTTCTTC
119388902 CTTTCTTT-TTTTT-TTT
1 CTTTCTTTGTTTTTGTTT
119388918 CTTTCTTTGTTTTTGTTT
1 CTTTCTTTGTTTTTGTTT
119388936 CT
1 CT
119388938 CTCATGTACG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 5 0.28
18 5 0.28
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.81
Consensus pattern (18 bp):
CTTTCTTTGTTTTTGTTT
Found at i:119394487 original size:2 final size:2
Alignment explanation
Indices: 119394480--119394507 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
119394470 ATGTGTTATG
119394480 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
119394508 GTGCATGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:119394615 original size:39 final size:39
Alignment explanation
Indices: 119394565--119394748 Score: 314
Period size: 39 Copynumber: 4.7 Consensus size: 39
119394555 GTGTGAGATA
*
119394565 TATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
119394604 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
119394643 TATGTCTGGGCTAAGTCCCGAAGGTATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
119394682 TATATCCGGGCTAAGTCCCGAAGGTATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
119394721 TATATCCGGGCTAAGTCCCGAAGGCATT
1 TATATCCGGGCTAAGTCCCGAAGGCATT
119394749 TGTGTTGGAA
Statistics
Matches: 136, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 136 1.00
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.30
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:119397520 original size:27 final size:28
Alignment explanation
Indices: 119397468--119397525 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
119397458 AAAGAAAACA
119397468 ATAATATAAAAAAAATATTAAGAAATAT
1 ATAATATAAAAAAAATATTAAGAAATAT
*
119397496 ATAAT-TAATAAAAAATTTTAA-AAATAT
1 ATAATATAA-AAAAAATATTAAGAAATAT
119397523 ATA
1 ATA
119397526 TTATTTAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 12 0.43
28 16 0.57
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (28 bp):
ATAATATAAAAAAAATATTAAGAAATAT
Found at i:119397707 original size:15 final size:15
Alignment explanation
Indices: 119397670--119397710 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
119397660 TTTAATTTTT
119397670 TATACTAATAAATAA
1 TATACTAATAAATAA
*
119397685 TA-AGTAATGAAATAA
1 TATACTAAT-AAATAA
119397700 TATA-TAATAAA
1 TATACTAATAAA
119397711 AGGAAGATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 8 0.35
15 14 0.61
16 1 0.04
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (15 bp):
TATACTAATAAATAA
Found at i:119397743 original size:10 final size:10
Alignment explanation
Indices: 119397728--119397800 Score: 53
Period size: 10 Copynumber: 7.2 Consensus size: 10
119397718 TAATATAGGG
119397728 AATAATATAT
1 AATAATATAT
119397738 AATAATATAT
1 AATAATATAT
* *
119397748 GAT-ATGTGAT
1 AATAATAT-AT
*
119397758 AA-AAAATAT
1 AATAATATAT
*
119397767 AAATAAAATAT
1 -AATAATATAT
119397778 AATGAA-ATAT
1 AAT-AATATAT
119397788 AATAATATGAT
1 AATAATAT-AT
119397799 AA
1 AA
119397801 CTATCATATA
Statistics
Matches: 51, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
9 7 0.14
10 31 0.61
11 13 0.25
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (10 bp):
AATAATATAT
Found at i:119397981 original size:13 final size:13
Alignment explanation
Indices: 119397956--119397989 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
119397946 TAAAATATAT
119397956 AATGTAT-AATAA
1 AATGTATAAATAA
*
119397968 AATTTATAAATAA
1 AATGTATAAATAA
119397981 AATGTATAA
1 AATGTATAA
119397990 TAATAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (13 bp):
AATGTATAAATAA
Found at i:119397991 original size:12 final size:12
Alignment explanation
Indices: 119397956--119397992 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
119397946 TAAAATATAT
119397956 AATGTATAATAA
1 AATGTATAATAA
*
119397968 AATTTATAAATAA
1 AATGTAT-AATAA
119397981 AATGTATAATAA
1 AATGTATAATAA
119397993 TAAAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
AATGTATAATAA
Found at i:119398001 original size:25 final size:24
Alignment explanation
Indices: 119397948--119398015 Score: 59
Period size: 25 Copynumber: 2.8 Consensus size: 24
119397938 ATATGTAGTA
*
119397948 AAAT-ATATAATGTATAATAAAAT
1 AAATAATAAAATGTATAATAAAAT
**
119397971 TTATAAATAAAATGTATAATAATAA-
1 AAAT-AATAAAATGTATAATAA-AAT
* *
119397996 AAATAATATAATGAATAATA
1 AAATAATAAAATGTATAATA
119398016 TATACTATTT
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
23 2 0.06
24 14 0.40
25 17 0.49
26 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (24 bp):
AAATAATAAAATGTATAATAAAAT
Found at i:119398012 original size:12 final size:12
Alignment explanation
Indices: 119397952--119398017 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
119397942 GTAGTAAAAT
119397952 ATATAATGTATA
1 ATATAATGTATA
* *
119397964 ATAAAATTTATAA
1 ATATAATGTAT-A
*
119397977 ATAAAATGTATA
1 ATATAATGTATA
**
119397989 ATAATAA-AAATA
1 AT-ATAATGTATA
*
119398001 ATATAATGAATA
1 ATATAATGTATA
119398013 ATATA
1 ATATA
119398018 TACTATTTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
11 4 0.09
12 26 0.59
13 14 0.32
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
ATATAATGTATA
Found at i:119399433 original size:6 final size:7
Alignment explanation
Indices: 119399415--119399439 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
119399405 TATTTTAATA
119399415 ATTTTTT
1 ATTTTTT
119399422 ATTTTTT
1 ATTTTTT
119399429 ATTTTTT
1 ATTTTTT
119399436 ATTT
1 ATTT
119399440 ACGGGCCCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
ATTTTTT
Found at i:119403884 original size:2 final size:2
Alignment explanation
Indices: 119403877--119403906 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
119403867 TCTTGCAAGC
119403877 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
119403907 ACCCAAATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:119404049 original size:17 final size:17
Alignment explanation
Indices: 119404027--119404060 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
119404017 AGACCCTCCG
119404027 TATTTTAATAGATAAAA
1 TATTTTAATAGATAAAA
119404044 TATTTTAATAGATAAAA
1 TATTTTAATAGATAAAA
119404061 CCAAACCAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (17 bp):
TATTTTAATAGATAAAA
Found at i:119404565 original size:45 final size:45
Alignment explanation
Indices: 119404474--119404567 Score: 107
Period size: 45 Copynumber: 2.1 Consensus size: 45
119404464 GACACATAGT
* * * * *
119404474 AAAAACACCGCGGATGGAATTTTCCTATGGTTCTGGATACACAAC
1 AAAAACACCGCAGATGGAATCTGCCAATGGCTCTGGATACACAAC
* * * *
119404519 AAAAACACCGTAGATGGAATCTGCCAATGGCTGTGGGTACATAAC
1 AAAAACACCGCAGATGGAATCTGCCAATGGCTCTGGATACACAAC
119404564 AAAA
1 AAAA
119404568 TAATGCCGAT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.21
Consensus pattern (45 bp):
AAAAACACCGCAGATGGAATCTGCCAATGGCTCTGGATACACAAC
Found at i:119406130 original size:36 final size:36
Alignment explanation
Indices: 119406089--119406160 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
119406079 GTGTGATTTT
*
119406089 TATCCTAATTTGTTAAAATTAAAAAGAAAAGAAATG
1 TATCCTAATTTGTTAAAATTAAAAAAAAAAGAAATG
*
119406125 TATCCTAATTTGTTTAAATTAAAAAAAAAAGAAATG
1 TATCCTAATTTGTTAAAATTAAAAAAAAAAGAAATG
119406161 GGGGAGTGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.53, C:0.06, G:0.10, T:0.32
Consensus pattern (36 bp):
TATCCTAATTTGTTAAAATTAAAAAAAAAAGAAATG
Found at i:119408646 original size:41 final size:41
Alignment explanation
Indices: 119408589--119408670 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
119408579 GTCTACGTAG
119408589 TGAAGTTTGATTCTTTTTCTTTTTGTTATGATCATGAATCT
1 TGAAGTTTGATTCTTTTTCTTTTTGTTATGATCATGAATCT
119408630 TGAAGTTTGATTCTTTTTCTTTTTGTTATGATCATGAATCT
1 TGAAGTTTGATTCTTTTTCTTTTTGTTATGATCATGAATCT
119408671 ATCTTCTTCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.20, C:0.10, G:0.15, T:0.56
Consensus pattern (41 bp):
TGAAGTTTGATTCTTTTTCTTTTTGTTATGATCATGAATCT
Found at i:119410633 original size:27 final size:27
Alignment explanation
Indices: 119410595--119410707 Score: 133
Period size: 27 Copynumber: 4.2 Consensus size: 27
119410585 AGCATGGCTG
* *
119410595 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
119410621 CCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
119410649 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
* *
119410676 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
119410703 CCAGA
1 CCAGA
119410708 ACGCTTCCTC
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
26 5 0.06
27 55 0.71
28 17 0.22
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:119410659 original size:54 final size:54
Alignment explanation
Indices: 119410595--119410709 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
119410585 AGCATGGCTG
* *
119410595 CCAGAACAGATA-ATGTGACAGAGTCACCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
119410649 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
119410703 CCAGAAC
1 CCAGAAC
119410710 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:119412347 original size:26 final size:26
Alignment explanation
Indices: 119412311--119412445 Score: 220
Period size: 26 Copynumber: 5.2 Consensus size: 26
119412301 CATGAAATTC
119412311 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
119412337 TTATCATGAAA-ATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
119412362 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
119412388 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
119412414 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
119412440 TTATCA
1 TTATCA
119412446 ATTTGTATCA
Statistics
Matches: 105, Mismatches: 2, Indels: 4
0.95 0.02 0.04
Matches are distributed among these distances:
25 25 0.24
26 78 0.74
27 2 0.02
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:119414762 original size:64 final size:64
Alignment explanation
Indices: 119414689--119414899 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
119414679 CTGGGCCAGA
*
119414689 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
119414753 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
119414815 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
119414826 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
119414890 GCCCATTTCA
1 GCCCATTTCA
119414900 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:119414901 original size:137 final size:137
Alignment explanation
Indices: 119414655--119414941 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
119414645 TATTGGGCCT
**
119414655 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
119414720 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
119414785 CATATGC
131 CATATGC
119414792 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
119414857 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
119414922 CATATGC
131 CATATGC
119414929 AAGCCCATTTGGG
1 AAGCCCATTTGGG
119414942 GAGACTACTC
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:119416738 original size:26 final size:26
Alignment explanation
Indices: 119416702--119416836 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
119416692 CATGATATTC
119416702 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
119416728 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
119416754 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
119416780 TTATCATGAAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
* *
119416805 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
119416831 TTATCA
1 TTATCA
119416837 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 23 0.23
26 79 0.77
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:119422741 original size:21 final size:21
Alignment explanation
Indices: 119422712--119422870 Score: 93
Period size: 21 Copynumber: 7.6 Consensus size: 21
119422702 GAAGCCCGTA
* *
119422712 AGCTGAATAGAAGCTCATGAG
1 AGCTAAATAGAAGCTCATAAG
* *
119422733 AGCTAAATAGAAACTAATAAG
1 AGCTAAATAGAAGCTCATAAG
* * * *
119422754 AGTTTAACAGAAGCTCGTAAG
1 AGCTAAATAGAAGCTCATAAG
* * *
119422775 AGCTAAAAAAAAACTCATAAG
1 AGCTAAATAGAAGCTCATAAG
* * * * * *
119422796 AGTTGAACAGAAACTCGTAGG
1 AGCTAAATAGAAGCTCATAAG
* * * *
119422817 ATCTGAATAGAAACTCATAAA
1 AGCTAAATAGAAGCTCATAAG
* * *
119422838 AGTTGAACAGAAGCTCATAAG
1 AGCTAAATAGAAGCTCATAAG
*
119422859 AGCTAAACAGAA
1 AGCTAAATAGAA
119422871 AGTAAAACAT
Statistics
Matches: 103, Mismatches: 35, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 103 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (21 bp):
AGCTAAATAGAAGCTCATAAG
Found at i:119422779 original size:42 final size:42
Alignment explanation
Indices: 119422715--119422871 Score: 188
Period size: 42 Copynumber: 3.7 Consensus size: 42
119422705 GCCCGTAAGC
* * *
119422715 TGAATAGAAGCTCATGAGAGCTAAATAGAAACTAATAAGAGT
1 TGAACAGAAGCTCATAAGAGCTAAATAGAAACTCATAAGAGT
* * * *
119422757 TTAACAGAAGCTCGTAAGAGCTAAAAAAAAACTCATAAGAGT
1 TGAACAGAAGCTCATAAGAGCTAAATAGAAACTCATAAGAGT
* * * * * *
119422799 TGAACAGAAACTCGTAGGATCTGAATAGAAACTCATAAAAGT
1 TGAACAGAAGCTCATAAGAGCTAAATAGAAACTCATAAGAGT
*
119422841 TGAACAGAAGCTCATAAGAGCTAAACAGAAA
1 TGAACAGAAGCTCATAAGAGCTAAATAGAAA
119422872 GTAAAACATG
Statistics
Matches: 94, Mismatches: 21, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 94 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (42 bp):
TGAACAGAAGCTCATAAGAGCTAAATAGAAACTCATAAGAGT
Found at i:119423834 original size:27 final size:27
Alignment explanation
Indices: 119423656--119423875 Score: 160
Period size: 27 Copynumber: 8.2 Consensus size: 27
119423646 TGTAAGGTAG
* * *
119423656 AATTACCAAAATACCCTTTG-TTTATAC
1 AATTACCAAAATACCC-TCGATTTGTAA
*
119423683 AATTACCAAAATACCCT-GGTTTGTAA
1 AATTACCAAAATACCCTCGATTTGTAA
*
119423709 AATTACCAAAATA-CCTCTAGTTTGTAA
1 AATTACCAAAATACCCTCGA-TTTGTAA
* * *
119423736 AATTACCAAAATA-CCTCTAATTTTTGA
1 AATTACCAAAATACCCTC-GATTTGTAA
*** **
119423763 AATTATTGAAATACCCTCGACCTGTAA
1 AATTACCAAAATACCCTCGATTTGTAA
** *
119423790 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTCGATTTGTAA
* **
119423817 AATTACCAAAGTACCCTCGATTTACAA
1 AATTACCAAAATACCCTCGATTTGTAA
* *** **
119423844 AATTATCATTTTACCCTCGATTTACAA
1 AATTACCAAAATACCCTCGATTTGTAA
119423871 AATTA
1 AATTA
119423876 TCATTTTACC
Statistics
Matches: 161, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
25 4 0.02
26 19 0.12
27 133 0.83
28 5 0.03
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.33
Consensus pattern (27 bp):
AATTACCAAAATACCCTCGATTTGTAA
Found at i:119423859 original size:54 final size:54
Alignment explanation
Indices: 119423801--119424048 Score: 289
Period size: 54 Copynumber: 4.6 Consensus size: 54
119423791 ATTACTGAAA
* * ***
119423801 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAAAATTATCATTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTATCATTT
* * *
119423855 TACCCTCGATTTACAAAATTATCATTTTACCCTTGATTTACAAAATTATCATTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTATCATTT
* * ** * *
119423909 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATCTTTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTATCATTT
** * * * * * * *
119423963 TACCCTTAATTTACAAAATTACTATTTTATCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTATCATTT
119424017 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAAAATTACCATTTTACCC
119424049 CCAGGGTGTT
Statistics
Matches: 166, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 166 1.00
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTATCATTT
Found at i:119423873 original size:81 final size:81
Alignment explanation
Indices: 119423799--119424037 Score: 201
Period size: 81 Copynumber: 3.0 Consensus size: 81
119423789 AAATTACTGA
**
119423799 AATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAAAATTA-TCATTTTACCCTCG
1 AATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTACT-ATTTTACCCTCG
119423863 ATTTACAAAATTATCAT
65 ATTTACAAAATTATCAT
** * * * *** * *
119423880 TTTACCCTTGATTTACAAAATTATCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGA
1 AATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTACTATTTTACCCTCGA
* *
119423945 TTTACAGAATTATCTT
66 TTTACAAAATTATCAT
** ** * * *** * * * **
119423961 TTTACCCTTAATTTACAAAATTACTATTTTATCCTCAATTTACAGAATTACCGTTTTACCCTCGA
1 AATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTACTATTTTACCCTCGA
*
119424026 TTTATAAAATTA
66 TTTACAAAATTA
119424038 CCATTTTACC
Statistics
Matches: 135, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
81 134 0.99
82 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.40
Consensus pattern (81 bp):
AATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTACTATTTTACCCTCGA
TTTACAAAATTATCAT
Found at i:119423876 original size:27 final size:27
Alignment explanation
Indices: 119423828--119424048 Score: 284
Period size: 27 Copynumber: 8.2 Consensus size: 27
119423818 ATTACCAAAG
119423828 TACCCTCGATTTACAAAATTATCATTT
1 TACCCTCGATTTACAAAATTATCATTT
119423855 TACCCTCGATTTACAAAATTATCATTT
1 TACCCTCGATTTACAAAATTATCATTT
*
119423882 TACCCTTGATTTACAAAATTATCATTT
1 TACCCTCGATTTACAAAATTATCATTT
* *
119423909 TACCCTCGATTTACAGAATTA-CTGTTT
1 TACCCTCGATTTACAAAATTATC-ATTT
* *
119423936 TACCCTCGATTTACAGAATTATCTTTT
1 TACCCTCGATTTACAAAATTATCATTT
**
119423963 TACCCTTAATTTACAAAATTA-CTATTT
1 TACCCTCGATTTACAAAATTATC-ATTT
* * * * *
119423990 TATCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTATCATTT
* *
119424017 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTATCATTT
119424044 TACCC
1 TACCC
119424049 CCAGGGTGTT
Statistics
Matches: 172, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
26 2 0.01
27 168 0.98
28 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.05, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTATCATTT
Found at i:119424045 original size:81 final size:81
Alignment explanation
Indices: 119423828--119424048 Score: 327
Period size: 81 Copynumber: 2.7 Consensus size: 81
119423818 ATTACCAAAG
* * * *
119423828 TACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAAAATTATCATTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCATTTTACCCTTAATT
119423893 TACAAAATTATCATTT
66 TACAAAATTATCATTT
* * *
119423909 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATCTTTTTACCCTTAATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCATTTTACCCTTAATT
119423974 TACAAAATTA-CTATTT
66 TACAAAATTATC-ATTT
* * * *
119423990 TATCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCATTTTACCC
119424049 CCAGGGTGTT
Statistics
Matches: 125, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
80 1 0.01
81 124 0.99
ACGTcount: A:0.31, C:0.22, G:0.05, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCATTTTACCCTTAATT
TACAAAATTATCATTT
Found at i:119424327 original size:27 final size:26
Alignment explanation
Indices: 119424283--119424333 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
119424273 CTCGCTGTAA
*
119424283 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
119424310 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
119424334 GGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:119424374 original size:2 final size:2
Alignment explanation
Indices: 119424367--119424412 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
119424357 GCTTCGCCAC
119424367 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
119424409 AT AT
1 AT AT
119424413 CTGTTCTGGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:119424622 original size:31 final size:31
Alignment explanation
Indices: 119424588--119424659 Score: 94
Period size: 31 Copynumber: 2.3 Consensus size: 31
119424578 TGCATTCACA
* *
119424588 TTCTGATT-TTGATTCTGTTACCTGATAT-TGA
1 TTCTGATTCTT-ATTCTATCACCTGAT-TCTGA
119424619 TTCTGATTCTTATTCTATCACCTGATTCTGA
1 TTCTGATTCTTATTCTATCACCTGATTCTGA
119424650 TTCTGATTCT
1 TTCTGATTCT
119424660 AGTTCTGATA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
30 1 0.03
31 34 0.92
32 2 0.05
ACGTcount: A:0.18, C:0.18, G:0.12, T:0.51
Consensus pattern (31 bp):
TTCTGATTCTTATTCTATCACCTGATTCTGA
Found at i:119424625 original size:6 final size:6
Alignment explanation
Indices: 119424587--119424668 Score: 55
Period size: 6 Copynumber: 13.3 Consensus size: 6
119424577 TTGCATTCAC
* *
119424587 ATTCTG ATTTTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTCTT ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
*
119424635 ATCACCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
119424669 AATGTTTCTT
Statistics
Matches: 61, Mismatches: 5, Indels: 20
0.71 0.06 0.23
Matches are distributed among these distances:
5 6 0.10
6 45 0.74
7 6 0.10
8 3 0.05
9 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:119426719 original size:27 final size:27
Alignment explanation
Indices: 119426541--119426733 Score: 160
Period size: 27 Copynumber: 7.2 Consensus size: 27
119426531 TGTAAGGTAG
* * *
119426541 AATTACCAAAATACCCTTTG-TTTATAC
1 AATTACCAAAATACCC-TCGATTTGTAA
*
119426568 AATTACCAAAATACCCT-GGTTTGTAA
1 AATTACCAAAATACCCTCGATTTGTAA
*
119426594 AATTACCAAAATA-CCTCTAGTTTGTAA
1 AATTACCAAAATACCCTCGA-TTTGTAA
* * *
119426621 AATTACCAAAATA-CCTCTAATTTTTGA
1 AATTACCAAAATACCCTC-GATTTGTAA
*** **
119426648 AATTATTGAAATACCCTCGACCTGTAA
1 AATTACCAAAATACCCTCGATTTGTAA
** *
119426675 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTCGATTTGTAA
* **
119426702 AATTACCAAAGTACCCTCGATTTACAA
1 AATTACCAAAATACCCTCGATTTGTAA
119426729 AATTA
1 AATTA
119426734 TCATTTTACC
Statistics
Matches: 138, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
25 4 0.03
26 19 0.14
27 110 0.80
28 5 0.04
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTCGATTTGTAA
Found at i:119426743 original size:27 final size:27
Alignment explanation
Indices: 119426713--119426906 Score: 219
Period size: 27 Copynumber: 7.2 Consensus size: 27
119426703 ATTACCAAAG
119426713 TACCCTCGATTTACAAAATTATCATTT
1 TACCCTCGATTTACAAAATTATCATTT
* *
119426740 TACCCTTGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTATCATTT
* **
119426767 TACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTATCATTT
* *
119426794 TACCCTCGATTTACAGAATTATCTTTT
1 TACCCTCGATTTACAAAATTATCATTT
**
119426821 TACCCTTAATTTACAAAATTA-CTATTT
1 TACCCTCGATTTACAAAATTATC-ATTT
* * * * *
119426848 TATCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTATCATTT
* * *
119426875 TACCATCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTATCATTT
119426902 TACCC
1 TACCC
119426907 CCAGGGTGTT
Statistics
Matches: 143, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 141 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTATCATTT
Found at i:119426744 original size:54 final size:54
Alignment explanation
Indices: 119426686--119426906 Score: 138
Period size: 54 Copynumber: 4.1 Consensus size: 54
119426676 ATTACTGAAA
**
119426686 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAAAATTATCATTT
1 TACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTATCATTT
* * * **** * **
119426740 TACCCTTGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTATCATTT
* * * **** **
119426794 TACCCTCGATTTACAGAATTATCTTTTTACCCTTAATTTACAAAATTA-CTATTT
1 TACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTATC-ATTT
* * * * **** * * *
119426848 TATCCTCAATTTACAGAATTACCGTTTTACCATCGATTTATAAAATTACCATTT
1 TACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTATCATTT
119426902 TACCC
1 TACCC
119426907 CCAGGGTGTT
Statistics
Matches: 136, Mismatches: 29, Indels: 4
0.80 0.17 0.02
Matches are distributed among these distances:
54 135 0.99
55 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.40
Consensus pattern (54 bp):
TACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTATCATTT
Found at i:119426758 original size:81 final size:82
Alignment explanation
Indices: 119426673--119426906 Score: 192
Period size: 81 Copynumber: 2.9 Consensus size: 82
119426663 CTCGACCTGT
119426673 AAAATTACT-GAAATACCCTCGACTTGTA-A-AATTACCAAAGTACCCTCGATTTACAAAATTAT
1 AAAATTACTCGAAATACCCTCGA-TT-TACAGAATTACCAAAGTACCCTCGATTTACAAAATTAT
*
119426735 CATTTTACCCTTGATTTAC
64 CATTTTACCCTTAATTTAC
*** ****** * *
119426754 AAAATTA-TCGTTTTACCCTCGATTTACAGAATTATTGTTTTACCCTCGATTTACAGAATTATCT
1 AAAATTACTCGAAATACCCTCGATTTACAGAATTACCAAAGTACCCTCGATTTACAAAATTATCA
119426818 TTTTACCCTTAATTTAC
66 TTTTACCCTTAATTTAC
** * * **** * * *
119426835 AAAATTACT--ATTTTATCCTCAATTTACAGAATTACCGTTTTACCATCGATTTATAAAATTACC
1 AAAATTACTCGA-AATACCCTCGATTTACAGAATTACCAAAGTACCCTCGATTTACAAAATTATC
119426898 ATTTTACCC
65 ATTTTACCC
119426907 CCAGGGTGTT
Statistics
Matches: 126, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
79 2 0.02
80 4 0.03
81 119 0.94
82 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.39
Consensus pattern (82 bp):
AAAATTACTCGAAATACCCTCGATTTACAGAATTACCAAAGTACCCTCGATTTACAAAATTATCA
TTTTACCCTTAATTTAC
Found at i:119427185 original size:27 final size:26
Alignment explanation
Indices: 119427141--119427192 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
119427131 CTCGCTATAA
*
119427141 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
119427168 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
119427193 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:119427447 original size:6 final size:6
Alignment explanation
Indices: 119427415--119427496 Score: 62
Period size: 6 Copynumber: 13.3 Consensus size: 6
119427405 TTGCATTCAC
* * *
119427415 ATTCTG ATTTTG ATTCTG -TTACCTG ATTTTG ATTCTG ATTCTT ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
119427463 ATCACCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
119427497 AATGTTTCTT
Statistics
Matches: 61, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
5 5 0.08
6 46 0.75
7 6 0.10
8 4 0.07
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:119427450 original size:31 final size:31
Alignment explanation
Indices: 119427415--119427487 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 31
119427405 TTGCATTCAC
* * *
119427415 ATTCTGATT-TTGATTCTGTTACCTGATTTTG
1 ATTCTGATTCTT-ATTCTATCACCTGATTCTG
119427446 ATTCTGATTCTTATTCTATCACCTGATTCTG
1 ATTCTGATTCTTATTCTATCACCTGATTCTG
119427477 ATTCTGATTCT
1 ATTCTGATTCT
119427488 AGTTCTGATA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
31 36 0.95
32 2 0.05
ACGTcount: A:0.18, C:0.18, G:0.12, T:0.52
Consensus pattern (31 bp):
ATTCTGATTCTTATTCTATCACCTGATTCTG
Found at i:119429438 original size:27 final size:27
Alignment explanation
Indices: 119429370--119429428 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
119429360 TGTAAGGTAG
*
119429370 AATTACCAAAATACCTCTAGTTTGTAA
1 AATTACCAAAATACCTCTAATTTGTAA
* *
119429397 AATTACCAAAATACCTCTAATTTTTGA
1 AATTACCAAAATACCTCTAATTTGTAA
119429424 AATTA
1 AATTA
119429429 TTGAAATACC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.42, C:0.17, G:0.05, T:0.36
Consensus pattern (27 bp):
AATTACCAAAATACCTCTAATTTGTAA
Found at i:119429453 original size:27 final size:27
Alignment explanation
Indices: 119429423--119429482 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
119429413 CTAATTTTTG
119429423 AAATTATTGAAATACCCTCGACCTGTA
1 AAATTATTGAAATACCCTCGACCTGTA
*
119429450 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTATTGAAATACCCTCGACCTGTA
119429477 AAATTA
1 AAATTA
119429483 CCAAAGTACC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTATTGAAATACCCTCGACCTGTA
Found at i:119429492 original size:27 final size:27
Alignment explanation
Indices: 119429423--119429497 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
119429413 CTAATTTTTG
**
119429423 AAATTATTGAAATACCCTCGACCTGTA
1 AAATTATCCAAATACCCTCGACCTGTA
** *
119429450 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTATCCAAATACCCTCGACCTGTA
119429477 AAATTA-CCAAAGTACCCTCGA
1 AAATTATCCAAA-TACCCTCGA
119429498 TTTACAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 3 0.07
27 41 0.93
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.28
Consensus pattern (27 bp):
AAATTATCCAAATACCCTCGACCTGTA
Found at i:119429506 original size:27 final size:27
Alignment explanation
Indices: 119429462--119429682 Score: 235
Period size: 27 Copynumber: 8.2 Consensus size: 27
119429452 ATTATTGAAA
* ** ***
119429462 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTACAAAATTACCATTT
*
119429489 TACCCTCGATTTACAAAATTATCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
119429516 TACCCTTGATTTACAAAATTATCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* **
119429543 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
119429570 TACCCTCGATTTACAGAATTATCTTTT
1 TACCCTCGATTTACAAAATTACCATTT
** *
119429597 TACCCTTAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * * *
119429624 TATCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
*
119429651 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
119429678 TACCC
1 TACCC
119429683 CCAGGGTGTT
Statistics
Matches: 162, Mismatches: 32, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 162 1.00
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:119429961 original size:27 final size:26
Alignment explanation
Indices: 119429917--119429968 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
119429907 CTCACTGTAA
*
119429917 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
119429944 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
119429969 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:119430008 original size:2 final size:2
Alignment explanation
Indices: 119430001--119430047 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
119429991 GCTCCGCCAC
119430001 AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
119430042 AT AT AT
1 AT AT AT
119430048 CTGTTCTGGT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:119430257 original size:31 final size:31
Alignment explanation
Indices: 119430223--119430294 Score: 94
Period size: 31 Copynumber: 2.3 Consensus size: 31
119430213 TGCATTCACA
* *
119430223 TTCTGATT-TTGATTCTGTTACCTGATAT-TGA
1 TTCTGATTCTT-ATTCTATCACCTGAT-TCTGA
119430254 TTCTGATTCTTATTCTATCACCTGATTCTGA
1 TTCTGATTCTTATTCTATCACCTGATTCTGA
119430285 TTCTGATTCT
1 TTCTGATTCT
119430295 AGTTCTGATA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
30 1 0.03
31 34 0.92
32 2 0.05
ACGTcount: A:0.18, C:0.18, G:0.12, T:0.51
Consensus pattern (31 bp):
TTCTGATTCTTATTCTATCACCTGATTCTGA
Found at i:119430260 original size:6 final size:6
Alignment explanation
Indices: 119430222--119430303 Score: 55
Period size: 6 Copynumber: 13.3 Consensus size: 6
119430212 TTGCATTCAC
* *
119430222 ATTCTG ATTTTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTCTT ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
*
119430270 ATCACCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
119430304 AATGTTTCTT
Statistics
Matches: 61, Mismatches: 5, Indels: 20
0.71 0.06 0.23
Matches are distributed among these distances:
5 6 0.10
6 45 0.74
7 6 0.10
8 3 0.05
9 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:119432585 original size:54 final size:54
Alignment explanation
Indices: 119432474--119432586 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
119432464 TGTAAGGTAG
* * **
119432474 AATTACCAAAATACCCTTTGTTTATACAATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTAATTTGTAA
* * * *
119432528 AATTACCAAAATA-CCTCTAGTTTGTAAAATTACCAAAATACCTCTAATTTTTGA
1 AATTACCAAAATACCCT-TAGTTTATAAAATTACCAAAATACCCCTAATTTGTAA
119432582 AATTA
1 AATTA
119432587 TTGAAATACC
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
53 3 0.06
54 47 0.94
ACGTcount: A:0.40, C:0.19, G:0.06, T:0.35
Consensus pattern (54 bp):
AATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTAATTTGTAA
Done.