Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 383 of 433
Found at i:119665895 original size:7 final size:7
Alignment explanation
Indices: 119665883--119665912 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
119665873 TATTTTTATG
119665883 TAATATT
1 TAATATT
119665890 TAATATT
1 TAATATT
119665897 TAATATT
1 TAATATT
119665904 TATATATT
1 TA-ATATT
119665912 T
1 T
119665913 TATTATAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 16 0.73
8 6 0.27
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TAATATT
Found at i:119668995 original size:46 final size:48
Alignment explanation
Indices: 119668917--119669006 Score: 116
Period size: 46 Copynumber: 1.9 Consensus size: 48
119668907 TTTAAGGGTT
*
119668917 AAAAAGATTATGAATAAAAATAGGTATTGTATTGAAA-AATATATTTTG
1 AAAAAGATTATAAATAAAAATAGGTATTGTATT-AAAGAATATATTTTG
*
119668965 AAAAA-ATTATAAAT-AAAAT-GAGTTTTGTATTAAAGAATATAT
1 AAAAAGATTATAAATAAAAATAG-GTATTGTATTAAAGAATATAT
119669007 ATTACATTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
45 4 0.11
46 21 0.55
47 8 0.21
48 5 0.13
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (48 bp):
AAAAAGATTATAAATAAAAATAGGTATTGTATTAAAGAATATATTTTG
Found at i:119670956 original size:7 final size:7
Alignment explanation
Indices: 119670946--119670970 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
119670936 AGTCATTTCA
119670946 TATTTAG
1 TATTTAG
119670953 TATTTAG
1 TATTTAG
119670960 TATTTAG
1 TATTTAG
119670967 TATT
1 TATT
119670971 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:119671504 original size:30 final size:30
Alignment explanation
Indices: 119671468--119671564 Score: 142
Period size: 30 Copynumber: 3.2 Consensus size: 30
119671458 ACGACGACTT
119671468 AGGCCCATCAACAGCGCCCACACAATCAGC
1 AGGCCCATCAACAGCGCCCACACAATCAGC
*
119671498 AGGCCCATCAACAGCGCCCATACAATCAGC
1 AGGCCCATCAACAGCGCCCACACAATCAGC
* * *
119671528 AAGCCCATCAACAGCGCTGC-CACAATCACC
1 AGGCCCATCAACAGCGC-CCACACAATCAGC
119671558 AGGCCCA
1 AGGCCCA
119671565 ACAGCTCAAC
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
30 59 0.98
31 1 0.02
ACGTcount: A:0.33, C:0.42, G:0.16, T:0.08
Consensus pattern (30 bp):
AGGCCCATCAACAGCGCCCACACAATCAGC
Found at i:119671512 original size:15 final size:14
Alignment explanation
Indices: 119671470--119671542 Score: 69
Period size: 15 Copynumber: 4.9 Consensus size: 14
119671460 GACGACTTAG
119671470 GCCCATCAACAGC-
1 GCCCATCAACAGCA
*
119671483 GCCCACACAATCAGCA
1 GCCCA-TCAA-CAGCA
119671499 GGCCCATCAACAGC-
1 -GCCCATCAACAGCA
119671513 GCCCATACAATCAGCAA
1 GCCCAT-CAA-CAGC-A
119671530 GCCCATCAACAGC
1 GCCCATCAACAGC
119671543 GCTGCCACAA
Statistics
Matches: 50, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
13 11 0.22
14 6 0.12
15 16 0.32
16 6 0.12
17 11 0.22
ACGTcount: A:0.34, C:0.42, G:0.15, T:0.08
Consensus pattern (14 bp):
GCCCATCAACAGCA
Found at i:119671642 original size:18 final size:18
Alignment explanation
Indices: 119671621--119671663 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
119671611 TGCCAGGTAC
*
119671621 GTATCCTATCCCTTATAT
1 GTATCCTAACCCTTATAT
*
119671639 GTATCCTAACCCTTTTAT
1 GTATCCTAACCCTTATAT
*
119671657 GTTTCCT
1 GTATCCT
119671664 TTTCCTAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.07, T:0.47
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:119676050 original size:126 final size:126
Alignment explanation
Indices: 119675776--119676523 Score: 1230
Period size: 126 Copynumber: 6.0 Consensus size: 126
119675766 ATAGCCTCAG
** *
119675776 TTTTTCTACGAACTACTGTAGCAAAAGTACGTCCACGTGGGAGCTTTTTTCTGAAATTTTGCTGA
1 TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGA
* *
119675841 CAGTGCATCCTGCTTGAAGCGTTTTT-ACACTATTTGTTCAGAAACATCTATTCAGAATTA
66 CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
* ***
119675901 TTTTTCTACAAACTACAACAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGA
1 TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGA
*
119675966 TAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
66 CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
119676027 TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGA
1 TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGA
* * * *
119676092 CAGTTCATCCTGTTTGAAGCATTTTTGACACTATTTGTTTAGAAACGTCTACTCAGAATTA
66 CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
* * * *
119676153 TTTTTCTACGAACTACTATAGCAAAAGCGCGTCCACGTGGGAGATTTTTGCTGAAATTTTGCTGA
1 TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGA
*
119676218 CAGTGCATCATGCTTGAAGCGTTTTTGACAC-ATTTGTTCAGAAACGTCTACTCAGAATTA
66 CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
* * * * *
119676278 TTTTTCTACGAACTACTGTAGCTAAAGCGCGTCTACGTAGGAGCTTTTTTTCGAAATTTTGCTAA
1 TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGA
119676343 CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
66 CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
* * * *
119676404 GTTTTCTACGAGCTATTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCAAAATTTTGCTGA
1 TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGA
119676469 CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCA
66 CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCA
119676524 ATTAACCTAA
Statistics
Matches: 574, Mismatches: 47, Indels: 3
0.92 0.08 0.00
Matches are distributed among these distances:
125 197 0.34
126 377 0.66
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (126 bp):
TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGA
CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
Found at i:119676255 original size:251 final size:252
Alignment explanation
Indices: 119675776--119676523 Score: 1239
Period size: 251 Copynumber: 3.0 Consensus size: 252
119675766 ATAGCCTCAG
** *
119675776 TTTTTCTACGAACTACTGTAGCAAAAGTACGTCCACGTGGGAGCTTTTTTCTGAAATTTTGCTGA
1 TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGA
* *
119675841 CAGTGCATCCTGCTTGAAGCGTTTTT-ACACTATTTGTTCAGAAACATCTATTCAGAATTATTTT
66 CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTT
* * * *
119675905 TCTACAAACTACAACAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGATAGT
131 TCTACGAACTACTATAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGT
119675970 GCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
196 GCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
119676027 TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGA
1 TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGA
* * * *
119676092 CAGTTCATCCTGTTTGAAGCATTTTTGACACTATTTGTTTAGAAACGTCTACTCAGAATTATTTT
66 CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTT
* * *
119676157 TCTACGAACTACTATAGCAAAAGCGCGTCCACGTGGGAGATTTTTGCTGAAATTTTGCTGACAGT
131 TCTACGAACTACTATAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGT
*
119676222 GCATCATGCTTGAAGCGTTTTTGACAC-ATTTGTTCAGAAACGTCTACTCAGAATTA
196 GCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
* * * * *
119676278 TTTTTCTACGAACTACTGTAGCTAAAGCGCGTCTACGTAGGAGCTTTTTTTCGAAATTTTGCTAA
1 TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGA
*
119676343 CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTAGTTT
66 CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTT
* * * *
119676408 TCTACGAGCTATTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCAAAATTTTGCTGACAGT
131 TCTACGAACTACTATAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGT
119676473 GCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCA
196 GCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCA
119676524 ATTAACCTAA
Statistics
Matches: 460, Mismatches: 35, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
251 318 0.69
252 142 0.31
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (252 bp):
TTTTTCTACGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGA
CAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTT
TCTACGAACTACTATAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGT
GCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
Found at i:119676470 original size:377 final size:377
Alignment explanation
Indices: 119675776--119676523 Score: 1246
Period size: 377 Copynumber: 2.0 Consensus size: 377
119675766 ATAGCCTCAG
* * * *
119675776 TTTTTCTACGAACTACTGTAGCAAAAGTACGTCCACGTGGGAGCTTTTTTCTGAAATTTTGCTGA
1 TTTTTCTACGAACTACTATAGCAAAAGCACGTCCACGTGGGAGATTTTTGCTGAAATTTTGCTGA
* *
119675841 CAGTGCATCCTGCTTGAAGCGTTTTTACACTATTTGTTCAGAAACATCTATTCAGAATTATTTTT
66 CAGTGCATCATGCTTGAAGCGTTTTTACACTATTTGTTCAGAAACATCTACTCAGAATTATTTTT
* * *
119675906 CTACAAACTACAACAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGATAGTG
131 CTACAAACTACAACAGCAAAAGCGCGTCCACGTAGGAGCTTTTTTCCGAAATTTTGCTAACAGTG
*
119675971 CATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTAC
196 CATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTAGTTTTCTAC
* *
119676036 GAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCGAAATTTTGCTGACAGTTCATC
261 GAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCAAAATTTTGCTGACAGTGCATC
* *
119676101 CTGTTTGAAGCATTTTTGACACTATTTGTTTAGAAACGTCTACTCAGAATTA
326 CTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
*
119676153 TTTTTCTACGAACTACTATAGCAAAAGCGCGTCCACGTGGGAGATTTTTGCTGAAATTTTGCTGA
1 TTTTTCTACGAACTACTATAGCAAAAGCACGTCCACGTGGGAGATTTTTGCTGAAATTTTGCTGA
*
119676218 CAGTGCATCATGCTTGAAGCGTTTTTGACAC-ATTTGTTCAGAAACGTCTACTCAGAATTATTTT
66 CAGTGCATCATGCTTGAAGCGTTTTT-ACACTATTTGTTCAGAAACATCTACTCAGAATTATTTT
* *** * * *
119676282 TCTACGAACTACTGTAGCTAAAGCGCGTCTACGTAGGAGCTTTTTTTCGAAATTTTGCTAACAGT
130 TCTACAAACTACAACAGCAAAAGCGCGTCCACGTAGGAGCTTTTTTCCGAAATTTTGCTAACAGT
119676347 GCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTAGTTTTCTA
195 GCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTAGTTTTCTA
* *
119676412 CGAGCTATTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCAAAATTTTGCTGACAGTGCAT
260 CGAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCAAAATTTTGCTGACAGTGCAT
*
119676477 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCA
325 CCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTACTCA
119676524 ATTAACCTAA
Statistics
Matches: 344, Mismatches: 26, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
377 340 0.99
378 4 0.01
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (377 bp):
TTTTTCTACGAACTACTATAGCAAAAGCACGTCCACGTGGGAGATTTTTGCTGAAATTTTGCTGA
CAGTGCATCATGCTTGAAGCGTTTTTACACTATTTGTTCAGAAACATCTACTCAGAATTATTTTT
CTACAAACTACAACAGCAAAAGCGCGTCCACGTAGGAGCTTTTTTCCGAAATTTTGCTAACAGTG
CATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTAGTTTTCTAC
GAACTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCCAAAATTTTGCTGACAGTGCATC
CTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATTA
Found at i:119676557 original size:19 final size:19
Alignment explanation
Indices: 119676533--119676572 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
119676523 AATTAACCTA
119676533 AATTAACCCTAAATTAATC
1 AATTAACCCTAAATTAATC
* * *
119676552 AATTAACGCTCATTTAATC
1 AATTAACCCTAAATTAATC
119676571 AA
1 AA
119676573 ATGATTAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.33
Consensus pattern (19 bp):
AATTAACCCTAAATTAATC
Found at i:119676673 original size:19 final size:19
Alignment explanation
Indices: 119676645--119676717 Score: 67
Period size: 19 Copynumber: 3.8 Consensus size: 19
119676635 ACCATTATGT
*
119676645 ATCAATTAACCCTAAATTA
1 ATCAACTAACCCTAAATTA
* * *
119676664 ATCAACTAACGCTCATTTA
1 ATCAACTAACCCTAAATTA
*
119676683 ATCGAA-TAACCCTAATTTA
1 ATC-AACTAACCCTAAATTA
* *
119676702 ATTAACTAACCATAAA
1 ATCAACTAACCCTAAA
119676718 CCCTAAACTC
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
18 2 0.05
19 39 0.91
20 2 0.05
ACGTcount: A:0.45, C:0.22, G:0.03, T:0.30
Consensus pattern (19 bp):
ATCAACTAACCCTAAATTA
Found at i:119676789 original size:7 final size:7
Alignment explanation
Indices: 119676774--119676831 Score: 57
Period size: 7 Copynumber: 8.3 Consensus size: 7
119676764 TTTATGAATT
*
119676774 AACCATA
1 AACCCTA
119676781 AACCCTA
1 AACCCTA
119676788 AACCACT-
1 AACC-CTA
*
119676795 AACCATA
1 AACCCTA
119676802 AACCCTA
1 AACCCTA
119676809 AACCACT-
1 AACC-CTA
*
119676816 AACCATA
1 AACCCTA
119676823 AACCCTA
1 AACCCTA
119676830 AA
1 AA
119676832 ATAACTAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
6 2 0.05
7 36 0.86
8 4 0.10
ACGTcount: A:0.50, C:0.36, G:0.00, T:0.14
Consensus pattern (7 bp):
AACCCTA
Found at i:119676798 original size:14 final size:15
Alignment explanation
Indices: 119676774--119676831 Score: 63
Period size: 14 Copynumber: 4.1 Consensus size: 15
119676764 TTTATGAATT
119676774 AACCA-TAAACCCTA
1 AACCACTAAACCCTA
*
119676788 AACCACT-AACCATA
1 AACCACTAAACCCTA
119676802 AACC-CTAAACCACT-
1 AACCACTAAACC-CTA
119676816 AACCA-TAAACCCTA
1 AACCACTAAACCCTA
119676830 AA
1 AA
119676832 ATAACTAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
13 4 0.11
14 31 0.84
15 2 0.05
ACGTcount: A:0.50, C:0.36, G:0.00, T:0.14
Consensus pattern (15 bp):
AACCACTAAACCCTA
Found at i:119676799 original size:21 final size:21
Alignment explanation
Indices: 119676773--119676831 Score: 118
Period size: 21 Copynumber: 2.8 Consensus size: 21
119676763 TTTTATGAAT
119676773 TAACCATAAACCCTAAACCAC
1 TAACCATAAACCCTAAACCAC
119676794 TAACCATAAACCCTAAACCAC
1 TAACCATAAACCCTAAACCAC
119676815 TAACCATAAACCCTAAA
1 TAACCATAAACCCTAAA
119676832 ATAACTAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.49, C:0.36, G:0.00, T:0.15
Consensus pattern (21 bp):
TAACCATAAACCCTAAACCAC
Found at i:119677083 original size:21 final size:22
Alignment explanation
Indices: 119677059--119677104 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
119677049 TGAAAAACAT
*
119677059 AAATTAATAATAA-TTAAG-ATA
1 AAATT-ATAAAAATTTAAGAATA
119677080 AAATTATAAAAATTTAAGAATA
1 AAATTATAAAAATTTAAGAATA
119677102 AAA
1 AAA
119677105 ATAAAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 6 0.27
21 10 0.45
22 6 0.27
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.30
Consensus pattern (22 bp):
AAATTATAAAAATTTAAGAATA
Found at i:119679986 original size:50 final size:51
Alignment explanation
Indices: 119679909--119680037 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
119679899 GACCATAGCA
* *
119679909 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
119679960 A-AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
119680010 ACAAGTGAAAAGTGGTAGTTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
119680038 CTGATCAGTG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
50 47 0.67
51 23 0.33
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:119680051 original size:31 final size:31
Alignment explanation
Indices: 119680013--119680163 Score: 171
Period size: 31 Copynumber: 4.8 Consensus size: 31
119680003 ACAAATGACA
*
119680013 AGTGAAAAGTGGTAGTTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
119680044 AGTGAAAAGTGGTAGCTCCTGG-TACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
* * * *
119680075 AGTGAAAAATGGTAGCTCCGACTACCTCATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
119680106 AGTGAAAAATGGTAGCTTCGGCTACAAGTGA-C
1 AGTGAAAAGTGGTAGCTTCGGCTAC--CTGATC
*
119680138 AAGTGAATAGTGGTAGCTTCGGCTAC
1 -AGTGAAAAGTGGTAGCTTCGGCTAC
119680164 AAGTGACAAG
Statistics
Matches: 104, Mismatches: 11, Indels: 8
0.85 0.09 0.07
Matches are distributed among these distances:
30 1 0.01
31 75 0.72
32 3 0.03
33 25 0.24
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:119680152 original size:33 final size:33
Alignment explanation
Indices: 119680003--119680176 Score: 125
Period size: 31 Copynumber: 5.5 Consensus size: 33
119679993 CTGATCAAGG
* * *
119680003 ACAAATGACAAGTGAAAAGTGGTAGTTTCGGCT
1 ACAAGTGACAAGTGAAAAATGGTAGCTTCGGCT
* * *
119680036 AC--CTGATC-AGTGAAAAGTGGTAGCTCCTGG-T
1 ACAAGTGA-CAAGTGAAAAATGGTAGCTTC-GGCT
* * *
119680067 AC--CTGATC-AGTGAAAAATGGTAGCTCCGACT
1 ACAAGTGA-CAAGTGAAAAATGGTAGCTTCGGCT
* *
119680098 AC--CTCATC-AGTGAAAAATGGTAGCTTCGGCT
1 ACAAGTGA-CAAGTGAAAAATGGTAGCTTCGGCT
* *
119680129 ACAAGTGACAAGTGAATAGTGGTAGCTTCGGCT
1 ACAAGTGACAAGTGAAAAATGGTAGCTTCGGCT
119680162 ACAAGTGACAAGTGA
1 ACAAGTGACAAGTGA
119680177 TTTCCGTATA
Statistics
Matches: 123, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
30 1 0.01
31 78 0.63
32 4 0.03
33 40 0.33
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (33 bp):
ACAAGTGACAAGTGAAAAATGGTAGCTTCGGCT
Found at i:119680267 original size:47 final size:46
Alignment explanation
Indices: 119680181--119680303 Score: 149
Period size: 47 Copynumber: 2.7 Consensus size: 46
119680171 AAGTGATTTC
* * *
119680181 CGTATAAGACCATATCTGGGATATGGCATCGGTATGATATATGCTATT
1 CGTATAAGACCATATCTGGGATATGACATCAGTAAGATATATG--ATT
* *
119680229 -GTATAAGACCATATCTGGGATATGACATCATTAAGATATGTGATT
1 CGTATAAGACCATATCTGGGATATGACATCAGTAAGATATATGATT
* * *
119680274 CGTGTAAGACCATAGCTGGGCTATGACATC
1 CGTATAAGACCATATCTGGGATATGACATC
119680304 GATAAATGAA
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
45 3 0.05
46 26 0.39
47 37 0.56
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGACATCAGTAAGATATATGATT
Found at i:119680340 original size:42 final size:43
Alignment explanation
Indices: 119680275--119680357 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 43
119680265 TATGTGATTC
** *
119680275 GTGTAAGACCATAGCTGGGCTATGACATCGA-TAAATGAAGAT
1 GTGTAAGACCATAGCTGAACTATGACATCGAGTAAACGAAGAT
*
119680317 GTGTAAGACCATAGTTGAACTATGACATCGAGTAAACGAAG
1 GTGTAAGACCATAGCTGAACTATGACATCGAGTAAACGAAG
119680358 TACTCAATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 28 0.78
43 8 0.22
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.23
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGAACTATGACATCGAGTAAACGAAGAT
Found at i:119682128 original size:30 final size:30
Alignment explanation
Indices: 119682092--119682152 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
119682082 TAACTTAATG
119682092 TTTTCATTGTTGTCTTGATTCTGCAATCTA
1 TTTTCATTGTTGTCTTGATTCTGCAATCTA
119682122 TTTTCATTGTTGTCTTGATTCTGCAATCTA
1 TTTTCATTGTTGTCTTGATTCTGCAATCTA
119682152 T
1 T
119682153 CTACTTCATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.16, C:0.16, G:0.13, T:0.54
Consensus pattern (30 bp):
TTTTCATTGTTGTCTTGATTCTGCAATCTA
Found at i:119684486 original size:17 final size:17
Alignment explanation
Indices: 119684464--119684498 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
119684454 TTTCAAAGAG
*
119684464 TGTGATGTTCAATTAAT
1 TGTGATGTTCAATCAAT
119684481 TGTGATGTTCAATCAAT
1 TGTGATGTTCAATCAAT
119684498 T
1 T
119684499 TTTTACGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.09, G:0.17, T:0.46
Consensus pattern (17 bp):
TGTGATGTTCAATCAAT
Found at i:119692160 original size:30 final size:30
Alignment explanation
Indices: 119692124--119692186 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
119692114 ACTTAACAAG
*
119692124 CAAATGTCTATAAAATAATAACAAAATTAA
1 CAAATGTCTATAAAATAATAACAAAAATAA
* *
119692154 CAAATGTCTTTAAAATAATTACAAAAATAA
1 CAAATGTCTATAAAATAATAACAAAAATAA
119692184 CAA
1 CAA
119692187 TAAAAATAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.59, C:0.11, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTATAAAATAATAACAAAAATAA
Found at i:119697743 original size:37 final size:39
Alignment explanation
Indices: 119697648--119697776 Score: 127
Period size: 40 Copynumber: 3.3 Consensus size: 39
119697638 AACAGACCAG
* **
119697648 ATTGGCACCTAGTGCCTCATCGAATAATTCGAAGTAATA
1 ATTGGCACCCAGTGCCTCATCGAATAAACCGAAGTAATA
* **
119697687 ATTTGACACCCAGTGCCTCATCGGCTAAACCGAAGT-A-A
1 A-TTGGCACCCAGTGCCTCATCGAATAAACCGAAGTAATA
* * *
119697725 ATTGGCACCCAGTGCCTCATCGAATTAATCCAAAGTAGTAA
1 ATTGGCACCCAGTGCCTCATCGAA-TAAACCGAAGTAAT-A
*
119697766 ATTGACACCCA
1 ATTGGCACCCA
119697777 ATATCTCATC
Statistics
Matches: 72, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
37 20 0.28
38 11 0.15
39 2 0.03
40 28 0.39
41 11 0.15
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (39 bp):
ATTGGCACCCAGTGCCTCATCGAATAAACCGAAGTAATA
Found at i:119698042 original size:24 final size:23
Alignment explanation
Indices: 119698003--119698049 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
119697993 AATTCATTCA
119698003 ATCAATATAAATTCAATCAATTT
1 ATCAATATAAATTCAATCAATTT
*
119698026 ATCACATACTAAA-TCAATCCATTT
1 ATCA-ATA-TAAATTCAATCAATTT
119698050 CAATTGCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.45, C:0.19, G:0.00, T:0.36
Consensus pattern (23 bp):
ATCAATATAAATTCAATCAATTT
Found at i:119701457 original size:18 final size:18
Alignment explanation
Indices: 119701428--119701472 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
119701418 TAAAGATTTT
*
119701428 TAAAACTAATTTTATTAA
1 TAAAAATAATTTTATTAA
119701446 -AAATAATAATTTTATTAA
1 TAAA-AATAATTTTATTAA
119701464 TAAAAATAA
1 TAAAAATAA
119701473 ATAATATGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 3 0.12
18 18 0.75
19 3 0.12
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
TAAAAATAATTTTATTAA
Found at i:119702197 original size:3 final size:3
Alignment explanation
Indices: 119702189--119702230 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
119702179 CCCTATCAAC
119702189 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
119702231 AACTCTGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:119705345 original size:3 final size:3
Alignment explanation
Indices: 119705339--119705384 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
119705329 TAAGTAGTAG
119705339 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
119705385 TCGCATGGTG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:119709679 original size:3 final size:3
Alignment explanation
Indices: 119709673--119709718 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
119709663 TTAGATGATG
119709673 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
119709719 AGCAATTCCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:119710757 original size:84 final size:82
Alignment explanation
Indices: 119710664--119710821 Score: 219
Period size: 84 Copynumber: 1.9 Consensus size: 82
119710654 AATTGAAATA
*
119710664 AGATGATAAAAT-AGAATTCGTCAAATCAACTAACCCGATTATCATTATTTATATTTATAATTAA
1 AGATGATAAAATAAG-ATTCATCAAATCAACTAACCCGATTAT-ATTATTTATATTTATAATTAA
119710728 TCAATTAATTATCATTGTTT
64 TCAATT-ATTATCATTGTTT
* ** * * *
119710748 AGATGATAAAATAAGATTCATCAAGTTGACTAACTCGATTATATTATTTTTATTTATAATTAATT
1 AGATGATAAAATAAGATTCATCAAATCAACTAACCCGATTATATTATTTATATTTATAATTAATC
119710813 AATTATTAT
66 AATTATTAT
119710822 TGTTTAGAAG
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
82 5 0.08
83 25 0.38
84 34 0.52
85 2 0.03
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (82 bp):
AGATGATAAAATAAGATTCATCAAATCAACTAACCCGATTATATTATTTATATTTATAATTAATC
AATTATTATCATTGTTT
Found at i:119712625 original size:2 final size:2
Alignment explanation
Indices: 119712618--119712648 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
119712608 ACTTTTAATA
119712618 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
119712649 AAACAAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:119712960 original size:22 final size:22
Alignment explanation
Indices: 119712921--119712984 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
119712911 ATAGTGGAAA
119712921 AAAAAT-AATATAAT-AAATAAC
1 AAAAATAAATA-AATAAAATAAC
*
119712942 AAAAATAAATAAATAAAATAGC
1 AAAAATAAATAAATAAAATAAC
* * *
119712964 AATAATAGATTAATAATAATA
1 AAAAATAAATAAATAA-AATA
119712985 GTACCAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.25
22 23 0.64
23 4 0.11
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (22 bp):
AAAAATAAATAAATAAAATAAC
Found at i:119715877 original size:52 final size:52
Alignment explanation
Indices: 119715814--119715912 Score: 171
Period size: 52 Copynumber: 1.9 Consensus size: 52
119715804 ATTAAGTCAG
119715814 GGATTGCATCAATTGGATTATACTAGCCAATACAAAACAACCCTTTTCTTGA
1 GGATTGCATCAATTGGATTATACTAGCCAATACAAAACAACCCTTTTCTTGA
** *
119715866 GGATTGCATCAATTGGATTATACTAGCCAATATGAAACAACTCTTTT
1 GGATTGCATCAATTGGATTATACTAGCCAATACAAAACAACCCTTTT
119715913 TCTAGGCTTG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.32
Consensus pattern (52 bp):
GGATTGCATCAATTGGATTATACTAGCCAATACAAAACAACCCTTTTCTTGA
Found at i:119721752 original size:3 final size:3
Alignment explanation
Indices: 119721744--119722147 Score: 89
Period size: 3 Copynumber: 134.3 Consensus size: 3
119721734 ATTCTTATCA
* * * **
119721744 ATT ATT ATT ATT ATT ATT ATT ATT -TT -TT TTT ATT ACT GTT AAC ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * *
119721790 AGT ATT ATT ATC ATT -TT ATGT -TC ATT ATC ATT TTT GTA ATT ATT
1 ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
119721834 ATT ACT ACT ATT ATT -TT ATT ATT ACT ACT ATT ATT CTT ATT AAGGT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -A-TT
* ** * * * *
119721880 ATT ATT ATT ACT ACC ATT TTCT ATCT ACT ATT ATT A-T CTT A-T ATAA
1 ATT ATT ATT ATT ATT ATT AT-T AT-T ATT ATT ATT ATT ATT ATT AT-T
* * * * * * * * *
119721926 AAT ATT GTT ATT ATT ATT ATA ACT ATT GTT ATC A-T AAT ATT -CT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * ** **
119721972 ATT ACGT -TT GTT ATT AGT ATT AAC ATT AATT ATT ATT ACC ATT A-T
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT
* * * * * * *
119722017 ATTT ATT ACT ATT ATT AGT ATT ATT -TT TTT AAT ACT ATC ACT ATT
1 A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
119722062 ATT A-T ATT ATT CA-T CTT ATT AATGT ACT ATT ATT ATT CCCTG CTT
1 ATT ATT ATT ATT -ATT ATT ATT -AT-T ATT ATT ATT ATT --ATT ATT
*
119722107 AACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
119722148 ACCTTTTATT
Statistics
Matches: 282, Mismatches: 92, Indels: 54
0.66 0.21 0.13
Matches are distributed among these distances:
2 20 0.07
3 239 0.85
4 20 0.07
5 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.03, T:0.56
Consensus pattern (3 bp):
ATT
Found at i:119721854 original size:20 final size:21
Alignment explanation
Indices: 119721829--119721875 Score: 87
Period size: 20 Copynumber: 2.3 Consensus size: 21
119721819 ATTTTTGTAA
119721829 TTATTATTACTACTATTATT-
1 TTATTATTACTACTATTATTC
119721849 TTATTATTACTACTATTATTC
1 TTATTATTACTACTATTATTC
119721870 TTATTA
1 TTATTA
119721876 AGGTATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 20 0.77
21 6 0.23
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.60
Consensus pattern (21 bp):
TTATTATTACTACTATTATTC
Found at i:119721892 original size:49 final size:49
Alignment explanation
Indices: 119721830--119721945 Score: 119
Period size: 49 Copynumber: 2.4 Consensus size: 49
119721820 TTTTTGTAAT
* * **
119721830 TATTATTACTACTATTATTTTATTAT-TACTACTATTATTCTTAT-TAAGG
1 TATTATTATTACTATTATTTT-CTATCTACTACTATTA-TCTTATATAAAA
** *
119721879 TATTATTATTACTACCATTTTCTATCTACTATTATTATCTTATATAAAA
1 TATTATTATTACTATTATTTTCTATCTACTACTATTATCTTATATAAAA
* *
119721928 TATTGTTATTATTATTAT
1 TATTATTATTACTATTAT
119721946 AACTATTGTT
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
48 9 0.17
49 45 0.83
ACGTcount: A:0.32, C:0.10, G:0.03, T:0.55
Consensus pattern (49 bp):
TATTATTATTACTATTATTTTCTATCTACTACTATTATCTTATATAAAA
Found at i:119723283 original size:2 final size:2
Alignment explanation
Indices: 119723278--119723314 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
119723268 GGTGTGTGTG
119723278 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
119723315 GATTTGAGCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:119727146 original size:25 final size:24
Alignment explanation
Indices: 119727093--119727223 Score: 113
Period size: 25 Copynumber: 5.2 Consensus size: 24
119727083 GCTCTCTCTC
*
119727093 GAGCCATATAAC-GAGAAGCT-CATAC
1 GAGCCA-ATAACAG-GAAGCTCCA-AA
* * *
119727118 GAGCCAATAACAGGAAGGTTCAAGG
1 GAGCCAATAACAGGAAGCTCCAA-A
*
119727143 GAGCCAATATCAGGAAGCTCCAAA
1 GAGCCAATAACAGGAAGCTCCAAA
*
119727167 GAGCCATTAACAGGAAGCTCACAAA
1 GAGCCAATAACAGGAAGCTC-CAAA
**
119727192 GAGCCTTTAATCAGGAAGCTCACAAA
1 GAGCCAATAA-CAGGAAGCTC-CAAA
119727218 GAGCCA
1 GAGCCA
119727224 TATATCGGGA
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
24 29 0.32
25 42 0.46
26 20 0.22
ACGTcount: A:0.40, C:0.23, G:0.23, T:0.14
Consensus pattern (24 bp):
GAGCCAATAACAGGAAGCTCCAAA
Found at i:119727171 original size:49 final size:51
Alignment explanation
Indices: 119727118--119727223 Score: 128
Period size: 49 Copynumber: 2.1 Consensus size: 51
119727108 AAGCTCATAC
* **
119727118 GAGCCAATAACAGGAAGGTTCA-AGGGAGCCAAT-ATCAGGAAGCTC-CAAA
1 GAGCCAATAACAGGAA-GCTCACAAAGAGCCAATAATCAGGAAGCTCACAAA
* **
119727167 GAGCCATTAACAGGAAGCTCACAAAGAGCCTTTAATCAGGAAGCTCACAAA
1 GAGCCAATAACAGGAAGCTCACAAAGAGCCAATAATCAGGAAGCTCACAAA
119727218 GAGCCA
1 GAGCCA
119727224 TATATCGGGA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
48 4 0.08
49 22 0.46
50 12 0.25
51 10 0.21
ACGTcount: A:0.41, C:0.23, G:0.24, T:0.13
Consensus pattern (51 bp):
GAGCCAATAACAGGAAGCTCACAAAGAGCCAATAATCAGGAAGCTCACAAA
Found at i:119727213 original size:26 final size:26
Alignment explanation
Indices: 119727143--119727224 Score: 125
Period size: 26 Copynumber: 3.3 Consensus size: 26
119727133 AGGTTCAAGG
*
119727143 GAGCCAAT-ATCAGGAAGCTC-CAAA
1 GAGCCATTAATCAGGAAGCTCACAAA
119727167 GAGCCATTAA-CAGGAAGCTCACAAA
1 GAGCCATTAATCAGGAAGCTCACAAA
*
119727192 GAGCCTTTAATCAGGAAGCTCACAAA
1 GAGCCATTAATCAGGAAGCTCACAAA
119727218 GAGCCAT
1 GAGCCAT
119727225 ATATCGGGAC
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
24 17 0.33
25 14 0.27
26 21 0.40
ACGTcount: A:0.40, C:0.24, G:0.21, T:0.15
Consensus pattern (26 bp):
GAGCCATTAATCAGGAAGCTCACAAA
Found at i:119728269 original size:27 final size:27
Alignment explanation
Indices: 119728238--119728291 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
119728228 AAAGATGATG
* *
119728238 AAAATGATGATATTTTCTTATTT-AATT
1 AAAAT-ATCATATTTTATTATTTCAATT
*
119728265 AAAATATCATCTTTTATTATTTCAATT
1 AAAATATCATATTTTATTATTTCAATT
119728292 TTCCAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.52
Consensus pattern (27 bp):
AAAATATCATATTTTATTATTTCAATT
Found at i:119732195 original size:9 final size:9
Alignment explanation
Indices: 119732181--119732205 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
119732171 TTCCTTTTTC
119732181 TAACTGGGT
1 TAACTGGGT
119732190 TAACTGGGT
1 TAACTGGGT
119732199 TAACTGG
1 TAACTGG
119732206 CTCATCATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.12, G:0.32, T:0.32
Consensus pattern (9 bp):
TAACTGGGT
Found at i:119734762 original size:16 final size:18
Alignment explanation
Indices: 119734743--119734783 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
119734733 TAACTAAATA
119734743 AATAATAAAAA-GA-GAT
1 AATAATAAAAATGAGGAT
*
119734759 AATAACAAAAATGAGGAT
1 AATAATAAAAATGAGGAT
119734777 AA-AATAA
1 AATAATAA
119734784 GATACGTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 10 0.48
17 6 0.29
18 5 0.24
ACGTcount: A:0.68, C:0.02, G:0.12, T:0.17
Consensus pattern (18 bp):
AATAATAAAAATGAGGAT
Found at i:119735712 original size:12 final size:12
Alignment explanation
Indices: 119735695--119735729 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
119735685 ATTTCTTGTA
*
119735695 AAAAATAAAATG
1 AAAAATAAAAAG
119735707 AAAAATAAAAAG
1 AAAAATAAAAAG
*
119735719 AAATATAAAAA
1 AAAAATAAAAA
119735730 AGACCAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (12 bp):
AAAAATAAAAAG
Found at i:119737790 original size:27 final size:27
Alignment explanation
Indices: 119737742--119737900 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
119737732 GCGAGGCTGC
* *
119737742 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
119737769 CAAATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
119737795 CAGATATATGTGGCAAAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
119737822 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
119737849 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
119737876 CAGATAATTGTCGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
119737901 GACGCTTCCT
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
26 9 0.08
27 99 0.88
28 5 0.04
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:119737835 original size:54 final size:54
Alignment explanation
Indices: 119737742--119737900 Score: 223
Period size: 54 Copynumber: 3.0 Consensus size: 54
119737732 GCGAGGCTGC
* * * * *
119737742 CAGATAT-TGTGACGAAGTCACCAGATACAAAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAAAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGAA
*
119737795 CAGATATATGTGGCAAAGCCACCAGATCAGATAATCGTGGCATAGCCACCAGAA
1 CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
* *
119737849 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTCGCATAGCCACCAG
1 CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
119737901 GACGCTTCCT
Statistics
Matches: 95, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 11 0.12
54 84 0.88
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
Found at i:119740760 original size:93 final size:92
Alignment explanation
Indices: 119740648--119740817 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 92
119740638 GCCCATAAGT
* *
119740648 GAACTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
119740713 GAGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
* *
119740740 GAACTCGGACTCAACTCAACGAGTTCGGATATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACT-GGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
119740805 CGAGTTCGGATGC
65 CGAGCTCGGATGC
119740818 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 5 0.07
93 67 0.93
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (92 bp):
GAACTGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:119740833 original size:46 final size:46
Alignment explanation
Indices: 119740640--119740819 Score: 211
Period size: 46 Copynumber: 3.9 Consensus size: 46
119740630 TGTAACCCGC
** *
119740640 CCATAAGTGAACT-GGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
* *
119740685 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-CTCGCAT
* *** * **
119740731 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGATATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
*
119740778 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC
119740820 AACCATCCTA
Statistics
Matches: 111, Mismatches: 20, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
45 13 0.12
46 62 0.56
47 36 0.32
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
Found at i:119742327 original size:26 final size:26
Alignment explanation
Indices: 119742296--119742403 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
119742286 TGAAATGCCC
119742296 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
119742322 ATCATGGAACATTTACCT-AACCTATT
1 ATCATGGAACATTTACCTAAACC-ATT
* *
119742348 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
119742374 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
119742400 ATCA
1 ATCA
119742404 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
25 4 0.05
26 69 0.91
27 3 0.04
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:119744282 original size:15 final size:14
Alignment explanation
Indices: 119744259--119744288 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
119744249 TATATATATA
119744259 TTTTTTTTTTTTTC
1 TTTTTTTTTTTTTC
119744273 TTTTTCTTTTTTTTC
1 TTTTT-TTTTTTTTC
119744288 T
1 T
119744289 CCTCCTCCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (14 bp):
TTTTTTTTTTTTTC
Found at i:119747006 original size:15 final size:15
Alignment explanation
Indices: 119746988--119747017 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
119746978 TAATTTTCTT
119746988 TAAAAAAATTATCTC
1 TAAAAAAATTATCTC
119747003 TAAAAAAATTATCTC
1 TAAAAAAATTATCTC
119747018 CATTCCCTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (15 bp):
TAAAAAAATTATCTC
Found at i:119752182 original size:31 final size:30
Alignment explanation
Indices: 119752147--119752221 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 30
119752137 AAACCCTAAT
119752147 ATTTGGTATTTAAACTTAACATTTTTTCTTA
1 ATTTGGTATTTAAACTTAACA-TTTTTCTTA
* * *
119752178 ATTTGATATCTAAACTTGACATTTTTCTTA
1 ATTTGGTATTTAAACTTAACATTTTTCTTA
* *
119752208 AGTTGGTACTTAAA
1 ATTTGGTATTTAAA
119752222 ACTTTTTGGG
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
30 19 0.51
31 18 0.49
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.49
Consensus pattern (30 bp):
ATTTGGTATTTAAACTTAACATTTTTCTTA
Found at i:119752205 original size:30 final size:31
Alignment explanation
Indices: 119752147--119752208 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
119752137 AAACCCTAAT
* *
119752147 ATTTGGTATTTAAACTTAACATTTTTTCTTA
1 ATTTGATATCTAAACTTAACATTTTTTCTTA
*
119752178 ATTTGATATCTAAACTTGACA-TTTTTCTTA
1 ATTTGATATCTAAACTTAACATTTTTTCTTA
119752208 A
1 A
119752209 GTTGGTACTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 10 0.36
31 18 0.64
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.52
Consensus pattern (31 bp):
ATTTGATATCTAAACTTAACATTTTTTCTTA
Found at i:119752400 original size:28 final size:28
Alignment explanation
Indices: 119752352--119752406 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
119752342 AATGAATATT
119752352 TTTTATTTTATATGTTCAATTACTTTTAG
1 TTTTATTTTATATGTTCAATTA-TTTTAG
*
119752381 TTTTATTTATTTAT-TT-AATTATTTTA
1 TTTTATTT-TATATGTTCAATTATTTTA
119752407 TTAATTGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 5 0.21
28 5 0.21
29 10 0.42
30 4 0.17
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.67
Consensus pattern (28 bp):
TTTTATTTTATATGTTCAATTATTTTAG
Found at i:119752753 original size:60 final size:58
Alignment explanation
Indices: 119752627--119752800 Score: 186
Period size: 60 Copynumber: 2.9 Consensus size: 58
119752617 ATTTGAACCT
* * * * *
119752627 AAAAAAAAGCTTAGGTATCAAATTAGGAAAAAAATGTCAAGTTCAAGTACTAAATTAGGC
1 AAAAAAAAGTTTAGGTA-CAAATTAGG-AAAAAGTGTCAAGTTCAGGTACCAAATTAGGA
** * *
119752687 CCAAAAAAGTTTAGGTACAAAATTAGGAAACAGTGTCAAGTTCAGGTACCGAATTAGGA
1 AAAAAAAAGTTTAGGTAC-AAATTAGGAAAAAGTGTCAAGTTCAGGTACCAAATTAGGA
* * * *
119752746 AAAAAAAAGGTTTAGGTACCAAATTAAGAAAAAGTGTTAAGTTCAGATGCCAAAT
1 AAAAAAAA-GTTTAGGTA-CAAATTAGGAAAAAGTGTCAAGTTCAGGTACCAAAT
119752801 GTTATATTAA
Statistics
Matches: 94, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
59 33 0.35
60 60 0.64
61 1 0.01
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (58 bp):
AAAAAAAAGTTTAGGTACAAATTAGGAAAAAGTGTCAAGTTCAGGTACCAAATTAGGA
Found at i:119753738 original size:25 final size:25
Alignment explanation
Indices: 119753704--119753753 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
119753694 TGAAAAAGCA
119753704 ATGAAATGATGTGAATGTAGAGTTT
1 ATGAAATGATGTGAATGTAGAGTTT
119753729 ATGAAATGATGTGAATGTAGAGTTT
1 ATGAAATGATGTGAATGTAGAGTTT
119753754 TCTTATATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.28, T:0.36
Consensus pattern (25 bp):
ATGAAATGATGTGAATGTAGAGTTT
Found at i:119755049 original size:33 final size:32
Alignment explanation
Indices: 119754965--119755049 Score: 89
Period size: 33 Copynumber: 2.6 Consensus size: 32
119754955 GACAATATAT
* * * *
119754965 GTGTAAGACCATAGCTAGGCTATGGCATCCTA
1 GTGTAAGACCATAGCTGGGATATGGCACCCGA
* *
119754997 ATGATAAGACCATATCTGGGATATGGCACCGCGA
1 GTG-TAAGACCATAGCTGGGATATGGCACC-CGA
*
119755031 GTGTAAGACCATGGCTGGG
1 GTGTAAGACCATAGCTGGG
119755050 CCTTGGCAAT
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
32 2 0.05
33 36 0.86
34 4 0.10
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (32 bp):
GTGTAAGACCATAGCTGGGATATGGCACCCGA
Found at i:119755216 original size:45 final size:45
Alignment explanation
Indices: 119755100--119755216 Score: 153
Period size: 45 Copynumber: 2.6 Consensus size: 45
119755090 ATCATACCAA
*
119755100 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTC
1 AAATGAGTAAGACCATAGCTGAAAGATGCTATGGCATCACGATTC
* * * **
119755145 AGACGAGTAACACCATAGCTGAAAGATGCTATGGCATTGCGATTC
1 AAATGAGTAAGACCATAGCTGAAAGATGCTATGGCATCACGATTC
* * *
119755190 AAATGTGTAAGACCATGGTTGAAAGAT
1 AAATGAGTAAGACCATAGCTGAAAGAT
119755217 ACTGTAATAC
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 60 1.00
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGCTGAAAGATGCTATGGCATCACGATTC
Found at i:119755392 original size:22 final size:23
Alignment explanation
Indices: 119755367--119755412 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
119755357 CAACCAAACC
119755367 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
119755389 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
119755412 A
1 A
119755413 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:119755418 original size:23 final size:23
Alignment explanation
Indices: 119755374--119755418 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
119755364 ACCAATTCAA
*
119755374 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
119755397 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
119755419 CACATGCCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:119758183 original size:46 final size:46
Alignment explanation
Indices: 119758127--119758232 Score: 176
Period size: 46 Copynumber: 2.3 Consensus size: 46
119758117 AGGTCATTAC
* * *
119758127 AGATATCATGGCAACATGACAGGAAATGAATAAGGCAATGGTTGAA
1 AGATACCATGGCAACATGACAAGAAATGAATAAGACAATGGTTGAA
*
119758173 AGATACCATGGCAACATGACAAGAAATGAATAAGACCATGGTTGAA
1 AGATACCATGGCAACATGACAAGAAATGAATAAGACAATGGTTGAA
119758219 AGATACCATGGCAA
1 AGATACCATGGCAA
119758233 GATGTTGAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 56 1.00
ACGTcount: A:0.44, C:0.14, G:0.24, T:0.18
Consensus pattern (46 bp):
AGATACCATGGCAACATGACAAGAAATGAATAAGACAATGGTTGAA
Found at i:119758278 original size:69 final size:62
Alignment explanation
Indices: 119758236--119758348 Score: 144
Period size: 58 Copynumber: 1.9 Consensus size: 62
119758226 ATGGCAAGAT
* * **
119758236 GTTGAAAGATACCATGACAAAATGACAGGAAATGAATAAGACCATGAAT--AAG-ACCATGA
1 GTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGAACCATGA
* *
119758295 -TTGAAAGATACCATGGCAACATGACAGGAAATTAATAAGACCATAGTTGAAAGA
1 GTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGA
119758349 CACTATAGCA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
58 42 0.93
60 3 0.07
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.19
Consensus pattern (62 bp):
GTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGAACCATGA
Found at i:119758284 original size:12 final size:12
Alignment explanation
Indices: 119758267--119758294 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
119758257 ATGACAGGAA
119758267 ATGAATAAGACC
1 ATGAATAAGACC
119758279 ATGAATAAGACC
1 ATGAATAAGACC
119758291 ATGA
1 ATGA
119758295 TTGAAAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.14, G:0.18, T:0.18
Consensus pattern (12 bp):
ATGAATAAGACC
Found at i:119761338 original size:46 final size:44
Alignment explanation
Indices: 119761234--119761341 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
119761224 TGTCTTTGAC
** * * *
119761234 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
119761278 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
119761324 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
119761342 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:119765649 original size:39 final size:39
Alignment explanation
Indices: 119765595--119765673 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
119765585 ACAAACTGAG
* *
119765595 ACCCCATGTATATCTCCATATGCTTCGACCTTCCGAAGA
1 ACCCCATGTATATCTCCACATGCTTCGACCTTCCAAAGA
* *
119765634 ACCCCATGTATATCTCCACATGCTTTGGCCTTCCAAAGA
1 ACCCCATGTATATCTCCACATGCTTCGACCTTCCAAAGA
119765673 A
1 A
119765674 AGTAACGGTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.28
Consensus pattern (39 bp):
ACCCCATGTATATCTCCACATGCTTCGACCTTCCAAAGA
Found at i:119766660 original size:56 final size:57
Alignment explanation
Indices: 119766571--119766677 Score: 153
Period size: 56 Copynumber: 1.9 Consensus size: 57
119766561 AATCTTATGA
* * ** *
119766571 TCATTTTTGAGAAATCCTTATTCATTTCTAAATGAATTCATTTCT-CATTTTCATTT
1 TCATTTTGGAGAAAACCGCATTCATTTCCAAATGAATTCATTTCTCCATTTTCATTT
*
119766627 TCATTTTGGAGAAAACCGCATTCATTTCCAAATGACTTCATTTCTCCATTT
1 TCATTTTGGAGAAAACCGCATTCATTTCCAAATGAATTCATTTCTCCATTT
119766678 CGAATAAAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
56 39 0.89
57 5 0.11
ACGTcount: A:0.27, C:0.20, G:0.07, T:0.46
Consensus pattern (57 bp):
TCATTTTGGAGAAAACCGCATTCATTTCCAAATGAATTCATTTCTCCATTTTCATTT
Found at i:119777070 original size:31 final size:31
Alignment explanation
Indices: 119777035--119777095 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
119777025 CGTTAAGTGT
* *
119777035 ATAACAGTAAGCTGACGTGGCACGTTAAATC
1 ATAACAGTAAGCTAACGTGACACGTTAAATC
*
119777066 ATAACAGTAAGCTAATGTGACACGTTAAAT
1 ATAACAGTAAGCTAACGTGACACGTTAAAT
119777096 TATCATTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (31 bp):
ATAACAGTAAGCTAACGTGACACGTTAAATC
Found at i:119779131 original size:13 final size:13
Alignment explanation
Indices: 119779113--119779137 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
119779103 GGATTGGATG
119779113 AGAACAGCATCAT
1 AGAACAGCATCAT
119779126 AGAACAGCATCA
1 AGAACAGCATCA
119779138 GTACCAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.24, G:0.16, T:0.12
Consensus pattern (13 bp):
AGAACAGCATCAT
Found at i:119780849 original size:11 final size:11
Alignment explanation
Indices: 119780833--119780858 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
119780823 TGCCTACTCA
119780833 TATAATATTAT
1 TATAATATTAT
119780844 TATAATATTAT
1 TATAATATTAT
119780855 TATA
1 TATA
119780859 TTAGTCAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
TATAATATTAT
Found at i:119782085 original size:1 final size:1
Alignment explanation
Indices: 119782081--119782109 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
119782071 ACTTAAATTT
119782081 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
119782110 CACACAACCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:119786800 original size:22 final size:22
Alignment explanation
Indices: 119786769--119786816 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
119786759 CTTTATGAAA
119786769 TTTTCAAAAAATTTAACTAATT
1 TTTTCAAAAAATTTAACTAATT
* * *
119786791 TTTTCTAAAATTTTAACTATTT
1 TTTTCAAAAAATTTAACTAATT
119786813 TTTT
1 TTTT
119786817 TATATTTGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTTCAAAAAATTTAACTAATT
Found at i:119788147 original size:15 final size:16
Alignment explanation
Indices: 119788121--119788150 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
119788111 GATTTAGTTG
119788121 ATTTTGAATTGGATCC
1 ATTTTGAATTGGATCC
119788137 ATTTT-AATTGGATC
1 ATTTTGAATTGGATC
119788151 AATATAAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.47
Consensus pattern (16 bp):
ATTTTGAATTGGATCC
Found at i:119790143 original size:33 final size:33
Alignment explanation
Indices: 119790101--119790166 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
119790091 CATGTAAGAG
*
119790101 CTTTGGACCCCAAAAAGAAAATTTTCAATTCAA
1 CTTTGGACCCAAAAAAGAAAATTTTCAATTCAA
119790134 CTTTGGACCCAAAAAAGAAAATTTTCAATTCAA
1 CTTTGGACCCAAAAAAGAAAATTTTCAATTCAA
119790167 TTCTTTTATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.44, C:0.20, G:0.09, T:0.27
Consensus pattern (33 bp):
CTTTGGACCCAAAAAAGAAAATTTTCAATTCAA
Found at i:119798221 original size:16 final size:17
Alignment explanation
Indices: 119798200--119798232 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
119798190 TTGGGTGGAG
119798200 AAAATT-ATTTAATTAA
1 AAAATTAATTTAATTAA
*
119798216 AAAATTAATTTAGTTAA
1 AAAATTAATTTAATTAA
119798233 TTTGATTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
AAAATTAATTTAATTAA
Found at i:119800080 original size:40 final size:40
Alignment explanation
Indices: 119799959--119800098 Score: 92
Period size: 40 Copynumber: 3.5 Consensus size: 40
119799949 AACTTCGAGT
* * * *
119799959 CGATGAGACCCTGGGTGTCAAATTATTACTT-TAGTTAAATT
1 CGATGAGACACTGGGTGTCAAATTATTACTTGGAATT--ATC
* * * * * *
119800000 CGATGAGGCATTGGGT-ACCAA-T-TTACTTCGGCA-TAGC
1 CGATGAGACACTGGGTGTCAAATTATTACTT-GGAATTATC
119800037 CGATGAGACACTGGGTGTCAAATTATTACTTGGAATTATC
1 CGATGAGACACTGGGTGTCAAATTATTACTTGGAATTATC
* * * *
119800077 CGATAAGGCACTAGGTGCCAAA
1 CGATGAGACACTGGGTGTCAAA
119800099 CTGATGTGTT
Statistics
Matches: 73, Mismatches: 20, Indels: 13
0.69 0.19 0.12
Matches are distributed among these distances:
37 15 0.21
38 9 0.12
39 6 0.08
40 30 0.41
41 13 0.18
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAAATTATTACTTGGAATTATC
Found at i:119800475 original size:5 final size:5
Alignment explanation
Indices: 119800454--119800506 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
119800444 TGTTAAAATA
* *
119800454 TATAT TAAAT TATTAT TATAT TATAG TATAT TATATT ATATAT TATAT
1 TATAT TATAT TA-TAT TATAT TATAT TATAT TATA-T -TATAT TATAT
119800502 TATAT
1 TATAT
119800507 AAATAAGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 31 0.76
6 6 0.15
7 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:119800485 original size:10 final size:9
Alignment explanation
Indices: 119800451--119800507 Score: 59
Period size: 8 Copynumber: 6.6 Consensus size: 9
119800441 ATGTGTTAAA
119800451 ATATATATT
1 ATATATATT
*
119800460 AAAT-TATT
1 ATATATATT
119800468 AT-TATATT
1 ATATATATT
119800476 ATAGTATATT
1 ATA-TATATT
119800486 ATAT-TA-T
1 ATATATATT
119800493 ATATTATATT
1 ATA-TATATT
119800503 ATATA
1 ATATA
119800508 AATAAGTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.35
9 8 0.20
10 13 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (9 bp):
ATATATATT
Found at i:119800497 original size:12 final size:12
Alignment explanation
Indices: 119800452--119800507 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
119800442 TGTGTTAAAA
*
119800452 TATATATTAAAT
1 TATATATTATAT
119800464 TAT-TATTATATT
1 TATATATTATA-T
119800476 ATAGTATATTATAT
1 -TA-TATATTATAT
119800490 TATATATTATAT
1 TATATATTATAT
119800502 TATATA
1 TATATA
119800508 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:119801844 original size:18 final size:19
Alignment explanation
Indices: 119801823--119801861 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
119801813 ATATATAGAT
119801823 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
119801841 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
119801860 AT
1 AT
119801862 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:119802378 original size:18 final size:19
Alignment explanation
Indices: 119802357--119802397 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
119802347 AATGAAATGA
119802357 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
119802375 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
119802394 GAAA
1 GAAA
119802398 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:119808501 original size:6 final size:6
Alignment explanation
Indices: 119808484--119808515 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
119808474 ATGATAGCAT
*
119808484 ACATAC ATATAC ACATAC ACATAC ACATAC AC
1 ACATAC ACATAC ACATAC ACATAC ACATAC AC
119808516 GTATCAGATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (6 bp):
ACATAC
Found at i:119808535 original size:3 final size:3
Alignment explanation
Indices: 119808527--119808584 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
119808517 TATCAGATAT
119808527 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
119808575 ATA ATA ATA A
1 ATA ATA ATA A
119808585 AATTTTGGAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:119808995 original size:12 final size:11
Alignment explanation
Indices: 119808943--119809016 Score: 57
Period size: 11 Copynumber: 6.7 Consensus size: 11
119808933 AATATATATT
119808943 TATTATTAAAA
1 TATTATTAAAA
*
119808954 TATTAATTTAAA
1 TATT-ATTAAAA
*
119808966 TATTTTTAATAA
1 TATTATTAA-AA
119808978 TA-TATTAAAA
1 TATTATTAAAA
119808988 TTATTATTTAAAA
1 -TATTA-TTAAAA
*
119809001 -ATTA--AAAC
1 TATTATTAAAA
119809009 TATTATTA
1 TATTATTA
119809017 TAAAAATAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 16
0.70 0.07 0.23
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 2 0.04
11 19 0.38
12 16 0.32
13 6 0.12
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (11 bp):
TATTATTAAAA
Found at i:119809006 original size:20 final size:21
Alignment explanation
Indices: 119808981--119809030 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 21
119808971 TTAATAATAT
119808981 ATTAAAATTATTATT-TAAAA
1 ATTAAAATTATTATTATAAAA
*
119809001 ATTAAAACTATTATTATAAAA
1 ATTAAAATTATTATTATAAAA
119809022 A-TAAAATTA
1 ATTAAAATTA
119809031 CAATATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
ATTAAAATTATTATTATAAAA
Found at i:119809233 original size:23 final size:22
Alignment explanation
Indices: 119809203--119809247 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
119809193 AGATTGAAAT
* *
119809203 TGTTTTTTTAGAAAATAAGTTA
1 TGTTTTTTAAAAAAATAAGTTA
119809225 TGTTGTTTTAAAAAAATAAGTTA
1 TGTT-TTTTAAAAAAATAAGTTA
119809248 ATTTATAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (22 bp):
TGTTTTTTAAAAAAATAAGTTA
Found at i:119810453 original size:2 final size:2
Alignment explanation
Indices: 119810446--119810474 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
119810436 ACAGCAAACT
119810446 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
119810475 TCTTAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:119828066 original size:51 final size:51
Alignment explanation
Indices: 119827984--119828084 Score: 184
Period size: 51 Copynumber: 2.0 Consensus size: 51
119827974 CAAGAAAAGA
* *
119827984 ATAGAAAATTTTAGTGGAAGAAAGTGGGAAAAGAAAAAGATAAGAGGAGGG
1 ATAGAAAATTTTAGTGGAAGAAAGCGAGAAAAGAAAAAGATAAGAGGAGGG
119828035 ATAGAAAATTTTAGTGGAAGAAAGCGAGAAAAGAAAAAGATAAGAGGAGG
1 ATAGAAAATTTTAGTGGAAGAAAGCGAGAAAAGAAAAAGATAAGAGGAGG
119828085 AAGAACAAGA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.52, C:0.01, G:0.32, T:0.15
Consensus pattern (51 bp):
ATAGAAAATTTTAGTGGAAGAAAGCGAGAAAAGAAAAAGATAAGAGGAGGG
Found at i:119838743 original size:22 final size:22
Alignment explanation
Indices: 119838704--119838755 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
119838694 GCACTATAGT
* * *
119838704 GCCTTCTGATTTGTACTTCGGG
1 GCCTACTGATTCGCACTTCGGG
* *
119838726 GCCTACTGATTCGCACTTTGGT
1 GCCTACTGATTCGCACTTCGGG
119838748 GCCTACTG
1 GCCTACTG
119838756 CTCAACACTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.12, C:0.27, G:0.25, T:0.37
Consensus pattern (22 bp):
GCCTACTGATTCGCACTTCGGG
Found at i:119840692 original size:21 final size:22
Alignment explanation
Indices: 119840666--119840706 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
119840656 ATTTCTAGAG
119840666 TTTTTA-TTTCGA-AAAATCAAA
1 TTTTTAGTTT-GATAAAATCAAA
119840687 TTTTTAGTTTGATAAAATCA
1 TTTTTAGTTTGATAAAATCA
119840707 TACAATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (22 bp):
TTTTTAGTTTGATAAAATCAAA
Found at i:119844065 original size:20 final size:20
Alignment explanation
Indices: 119844040--119844082 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
119844030 CAATTCATCA
*
119844040 CTGATTGAACGTACTCAACC
1 CTGATTGAACATACTCAACC
119844060 CTGATTGAACATACTCAACC
1 CTGATTGAACATACTCAACC
119844080 CTG
1 CTG
119844083 GTTCATCACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (20 bp):
CTGATTGAACATACTCAACC
Found at i:119844279 original size:244 final size:244
Alignment explanation
Indices: 119843843--119844303 Score: 825
Period size: 244 Copynumber: 1.9 Consensus size: 244
119843833 CGCACACTTT
*
119843843 ATCACATTGCCATAGCTTAGCTATGATTGCACTCTTGCACACACATATAAATGCCATGATTCAAT
1 ATCACATTGCCATAGCTTAGCTATGATTACACTCTTGCACACACATATAAATGCCATGATTCAAT
119843908 CATGGTCTTACGTTCACTTTCACAATGCCATAACCCAGTTATGGTTTTGCACTATAATGCCATAG
66 CATGGTCTTACGTTCACTTTCACAATGCCATAACCCAGTTATGGTTTTGCACTATAATGCCATAG
* * *
119843973 CTCAACTATGGTCTTACATTTCACACTTTATCATGGTTTAACCATGGTCTTATCCGTCAATTCAT
131 CTCAACTATGGTCTTACATTTCACACTATATCATGATTTAACCATGGTCTTATCCATCAATTCAT
119844038 CACTGATTGAACGTACTCAACCCTGATTGAACATACTCAACCCTGGTTC
196 CACTGATTGAACGTACTCAACCCTGATTGAACATACTCAACCCTGGTTC
* * * *
119844087 ATCACATTGTCATAGCTTAGCTGTGATTACACTCTTGCACATACATATAACTGCCATGATTCAAT
1 ATCACATTGCCATAGCTTAGCTATGATTACACTCTTGCACACACATATAAATGCCATGATTCAAT
119844152 CATGGTCTTACGTTCACTTTCACAATGCCATAACCCAGTTATGGTTTTGCACTATAATGCCATAG
66 CATGGTCTTACGTTCACTTTCACAATGCCATAACCCAGTTATGGTTTTGCACTATAATGCCATAG
*
119844217 CTTC-ACTATGGTCTTACATTTCACACTATGTCATGATTTAACCATGGTCTTATCCATCAATTCA
131 C-TCAACTATGGTCTTACATTTCACACTATATCATGATTTAACCATGGTCTTATCCATCAATTCA
119844281 TCACTGATTGAACGTACTCAACC
195 TCACTGATTGAACGTACTCAACC
119844304 TTGCGTTTCC
Statistics
Matches: 207, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
244 205 0.99
245 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (244 bp):
ATCACATTGCCATAGCTTAGCTATGATTACACTCTTGCACACACATATAAATGCCATGATTCAAT
CATGGTCTTACGTTCACTTTCACAATGCCATAACCCAGTTATGGTTTTGCACTATAATGCCATAG
CTCAACTATGGTCTTACATTTCACACTATATCATGATTTAACCATGGTCTTATCCATCAATTCAT
CACTGATTGAACGTACTCAACCCTGATTGAACATACTCAACCCTGGTTC
Found at i:119848469 original size:51 final size:51
Alignment explanation
Indices: 119848393--119848496 Score: 163
Period size: 51 Copynumber: 2.0 Consensus size: 51
119848383 ACAAAAATAT
* * *
119848393 AAGTGACTAAAACGTATCATTTCAAACATAAGTGATTAAAATGTAATCTGA
1 AAGTGACTAAAACGTAACATTTCAAACATAAATGATTAAAATATAATCTGA
* *
119848444 AAGTGACTAAAACGTAACATTTCAAATATAAATGATTAAAATATAATGTGA
1 AAGTGACTAAAACGTAACATTTCAAACATAAATGATTAAAATATAATCTGA
119848495 AA
1 AA
119848497 CAAACAAAAG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.49, C:0.10, G:0.12, T:0.29
Consensus pattern (51 bp):
AAGTGACTAAAACGTAACATTTCAAACATAAATGATTAAAATATAATCTGA
Found at i:119851686 original size:9 final size:9
Alignment explanation
Indices: 119851672--119851860 Score: 70
Period size: 10 Copynumber: 20.4 Consensus size: 9
119851662 CTACTTTTAT
119851672 TAAAAATTA
1 TAAAAATTA
119851681 TAAAAAAATTA
1 T--AAAAATTA
119851692 TAAAAATT-
1 TAAAAATTA
*
119851700 T-AAAATCAA
1 TAAAAAT-TA
**
119851709 TAAAAGCTA
1 TAAAAATTA
* *
119851718 CAAATATTA
1 TAAAAATTA
**
119851727 TTAAATTTTAA
1 -TAAAAATT-A
119851738 TAAAAA--A
1 TAAAAATTA
*
119851745 TCAAATATTA
1 T-AAAAATTA
119851755 -AA-AATTA
1 TAAAAATTA
* *
119851762 GAAAGAAATA
1 TAAA-AATTA
*
119851772 TAAAAATTG
1 TAAAAATTA
119851781 TAAAAA-TA
1 TAAAAATTA
*
119851789 TAAAATCTTA
1 TAAAA-ATTA
*
119851799 TAAAAATCA
1 TAAAAATTA
119851808 TAAAAAATTA
1 T-AAAAATTA
119851818 T-AAAATATA
1 TAAAAAT-TA
*
119851827 TAGAAATATAA
1 TA-AAA-ATTA
*
119851838 AAAAAATTA
1 TAAAAATTA
119851847 TAAAAATTTA
1 TAAAAA-TTA
119851857 TAAA
1 TAAA
119851861 GTCGTAAGAA
Statistics
Matches: 132, Mismatches: 27, Indels: 41
0.66 0.14 0.20
Matches are distributed among these distances:
7 11 0.08
8 20 0.15
9 38 0.29
10 46 0.35
11 15 0.11
12 2 0.02
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (9 bp):
TAAAAATTA
Found at i:119851689 original size:11 final size:11
Alignment explanation
Indices: 119851673--119851697 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
119851663 TACTTTTATT
119851673 AAAAATTATAA
1 AAAAATTATAA
119851684 AAAAATTATAA
1 AAAAATTATAA
119851695 AAA
1 AAA
119851698 TTTAAAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAAATTATAA
Found at i:119851777 original size:19 final size:17
Alignment explanation
Indices: 119851747--119851793 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
119851737 ATAAAAAATC
119851747 AAATATTAAAAATTAGAAA
1 AAATA-TAAAAATT-GAAA
*
119851766 GAAATATAAAAATTGTAA
1 -AAATATAAAAATTGAAA
119851784 AAATATAAAA
1 AAATATAAAA
119851794 TCTTATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 10 0.38
18 3 0.12
19 8 0.31
20 5 0.19
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (17 bp):
AAATATAAAAATTGAAA
Found at i:119851800 original size:27 final size:29
Alignment explanation
Indices: 119851782--119851877 Score: 85
Period size: 29 Copynumber: 3.3 Consensus size: 29
119851772 TAAAAATTGT
119851782 AAAAA-TATAAAATCTTATAAAAATCATA
1 AAAAATTATAAAATCTTATAAAAATCATA
* *
119851810 AAAAATTATAAAAT-ATATAGAAATAT-AAA
1 AAAAATTATAAAATCTTATA-AAA-ATCATA
* *
119851839 AAAAATTATAAAAAT-TTAT-AAAGTCGTA
1 AAAAATTAT-AAAATCTTATAAAAATCATA
119851867 AGAAAATTATA
1 A-AAAATTATA
119851878 CAAAATGTAA
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
27 1 0.02
28 15 0.27
29 30 0.54
30 10 0.18
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29
Consensus pattern (29 bp):
AAAAATTATAAAATCTTATAAAAATCATA
Found at i:119851810 original size:19 final size:18
Alignment explanation
Indices: 119851747--119851860 Score: 86
Period size: 19 Copynumber: 6.1 Consensus size: 18
119851737 ATAAAAAATC
* *
119851747 AAATATTAAAAATTAGAA
1 AAATATAAAAAATTATAA
*
119851765 AGAA-ATATAAAAATTGTAA
1 A-AATATA-AAAAATTATAA
**
119851784 AAATATAAAATCTTATAA
1 AAATATAAAAAATTATAA
119851802 AAATCATAAAAAATTATAA
1 AAAT-ATAAAAAATTATAA
* * *
119851821 AATATATAGAAATATAAAAA
1 AA-ATATA-AAAAATTATAA
*
119851841 AAATTATAAAAATTTATAA
1 AAA-TATAAAAAATTATAA
119851860 A
1 A
119851861 GTCGTAAGAA
Statistics
Matches: 74, Mismatches: 15, Indels: 13
0.73 0.15 0.13
Matches are distributed among these distances:
18 17 0.23
19 41 0.55
20 16 0.22
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.29
Consensus pattern (18 bp):
AAATATAAAAAATTATAA
Found at i:119851813 original size:28 final size:27
Alignment explanation
Indices: 119851747--119851860 Score: 88
Period size: 29 Copynumber: 4.0 Consensus size: 27
119851737 ATAAAAAATC
* * *
119851747 AAATATTAAAAATTAGAAAGAAATATAA
1 AAATATAAAAAATTATAAA-ATATATAA
* *
119851775 AAAT-TGTAAAAA-TATAAAATCTTATAA
1 AAATAT-AAAAAATTATAAAAT-ATATAA
119851802 AAATCATAAAAAATTATAAAATATATAGA
1 AAAT-ATAAAAAATTATAAAATATATA-A
* *
119851831 AATATAAAAAAAATTATAAAAATTTATAA
1 AA-ATATAAAAAATTAT-AAAATATATAA
119851860 A
1 A
119851861 GTCGTAAGAA
Statistics
Matches: 71, Mismatches: 7, Indels: 15
0.76 0.08 0.16
Matches are distributed among these distances:
26 1 0.01
27 15 0.21
28 19 0.27
29 25 0.35
30 11 0.15
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.29
Consensus pattern (27 bp):
AAATATAAAAAATTATAAAATATATAA
Found at i:119852143 original size:19 final size:19
Alignment explanation
Indices: 119852119--119852173 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
119852109 ATTCCTAATT
119852119 TTTAATATTTTTATTAAAA
1 TTTAATATTTTTATTAAAA
*
119852138 TTTAATTATTTTT-CTAAAA
1 TTTAA-TATTTTTATTAAAA
*
119852157 TTTATTATTTATTATTA
1 TTTAATATTT-TTATTA
119852174 TTTATAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 5 0.17
19 16 0.53
20 9 0.30
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTAATATTTTTATTAAAA
Found at i:119852350 original size:84 final size:84
Alignment explanation
Indices: 119852208--119852404 Score: 236
Period size: 84 Copynumber: 2.3 Consensus size: 84
119852198 TAAGAGCATG
** * *
119852208 GACTTAATTG-TTTTTTTGAAAAATTTTGAGGGTCTTTTTGATGCATTTTGAAAGTTTAAGTACC
1 GACTTAATTGCTTTTTTTGAAAAA-TTTGAGGACCTTTTCGATACATTTTGAAAGTTTAAGTACC
**
119852272 CAATTGAGTG-AAAAAATTA
65 CAATTGAGTGCAAAAAAAAA
* * * ***
119852291 GTCTTAACTGCTTTTTTTGAAGAAATTTGAGGACCTTTTCGATATATTTTGAAAGTTTAAGTGTT
1 GACTTAATTGCTTTTTTTGAA-AAATTTGAGGACCTTTTCGATACATTTTGAAAGTTTAAGTACC
119852356 CAATTGAGTGCCAAAAAAAAAA
65 CAATTGAGTG-C-AAAAAAAAA
119852378 GACTTAATTGCTTTTTTTGAAAAATTT
1 GACTTAATTGCTTTTTTTGAAAAATTT
119852405 TAAAAACTTT
Statistics
Matches: 95, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
83 8 0.08
84 52 0.55
85 3 0.03
86 6 0.06
87 26 0.27
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.42
Consensus pattern (84 bp):
GACTTAATTGCTTTTTTTGAAAAATTTGAGGACCTTTTCGATACATTTTGAAAGTTTAAGTACCC
AATTGAGTGCAAAAAAAAA
Found at i:119862092 original size:31 final size:31
Alignment explanation
Indices: 119862057--119862125 Score: 104
Period size: 31 Copynumber: 2.2 Consensus size: 31
119862047 TTACAATTTG
119862057 ATTATTGAATTATTCGAAAA-TTTTTATTTAA
1 ATTATTGAATTATTC-AAAAGTTTTTATTTAA
*
119862088 ATTATTAAATTATTCAAAAGTTTTTATTTAA
1 ATTATTGAATTATTCAAAAGTTTTTATTTAA
*
119862119 GTTATTG
1 ATTATTG
119862126 GGTTGTTAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 4 0.12
31 30 0.88
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.52
Consensus pattern (31 bp):
ATTATTGAATTATTCAAAAGTTTTTATTTAA
Found at i:119866110 original size:12 final size:11
Alignment explanation
Indices: 119866084--119866109 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
119866074 TTGACATGTG
119866084 TTTTCTTTTTT
1 TTTTCTTTTTT
119866095 TTTTCTTTTTT
1 TTTTCTTTTTT
119866106 TTTT
1 TTTT
119866110 TACCTTAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:119866182 original size:24 final size:24
Alignment explanation
Indices: 119866155--119866220 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
119866145 GGATGATTTG
*
119866155 GAGAAAATGAA-GAACAGATTGTAT
1 GAGAAAAT-AATGAACAAATTGTAT
* *
119866179 GAGAATATAATTAACAAATTGTAT
1 GAGAAAATAATGAACAAATTGTAT
* *
119866203 GAGAATATAATTAACAAA
1 GAGAAAATAATGAACAAA
119866221 GCTTTATTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
23 2 0.05
24 36 0.95
ACGTcount: A:0.53, C:0.05, G:0.17, T:0.26
Consensus pattern (24 bp):
GAGAAAATAATGAACAAATTGTAT
Found at i:119869018 original size:31 final size:31
Alignment explanation
Indices: 119868983--119869063 Score: 108
Period size: 31 Copynumber: 2.6 Consensus size: 31
119868973 AACTATCTAG
* * * *
119868983 TTGGTGACTCTACTTTTAGGGTGTTTTCATT
1 TTGGTCACTCAACTTTTAAGGTATTTTCATT
119869014 TTGGTCACTCAACTTTTAAGGTATTTTCATT
1 TTGGTCACTCAACTTTTAAGGTATTTTCATT
* *
119869045 TTAGTCACTCAACTATTAA
1 TTGGTCACTCAACTTTTAA
119869064 ATCTCTATTG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.22, C:0.16, G:0.15, T:0.47
Consensus pattern (31 bp):
TTGGTCACTCAACTTTTAAGGTATTTTCATT
Found at i:119871039 original size:3 final size:3
Alignment explanation
Indices: 119871031--119871058 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
119871021 AAGAAGGGTA
119871031 CAT CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT C
119871059 GAAGTGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:119876349 original size:43 final size:43
Alignment explanation
Indices: 119876209--119876370 Score: 136
Period size: 43 Copynumber: 3.8 Consensus size: 43
119876199 GTCACATAAG
* * * *
119876209 CTCAA-ACAATGCC-ATATCCCAGATATGGTCTTACATGTTAT
1 CTCAATACAATGCCAATGTCCCAGACATGGTCTTACACGTAAT
* * * *
119876250 -T-ACATATCGATGCCACTGTCCCAGACAGGGTCTTACACGAAAT
1 CTCA-ATA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAAT
* * * * *
119876293 C-GATTAACGATGCCAATGTCCCAGATACGGTCTTACACGTAAT
1 CTCAAT-ACAATGCCAATGTCCCAGACATGGTCTTACACGTAAT
*
119876336 CTCAATACAATGCCAATGTACCAGACATGGTCTTA
1 CTCAATACAATGCCAATGTCCCAGACATGGTCTTA
119876371 TATGCAATTA
Statistics
Matches: 94, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
39 1 0.01
40 2 0.02
41 1 0.01
42 6 0.06
43 80 0.85
44 4 0.04
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (43 bp):
CTCAATACAATGCCAATGTCCCAGACATGGTCTTACACGTAAT
Found at i:119889033 original size:6 final size:6
Alignment explanation
Indices: 119889022--119889062 Score: 66
Period size: 6 Copynumber: 7.0 Consensus size: 6
119889012 TATTTTACTA
*
119889022 TTATTT TTATTT TTATTT TTATTT TTATTT CTA-TT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
119889063 AAAATTCCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 4 0.12
6 28 0.88
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.80
Consensus pattern (6 bp):
TTATTT
Found at i:119893196 original size:30 final size:30
Alignment explanation
Indices: 119893160--119893220 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
119893150 GTATCGAGAT
119893160 AATCGAATGTCACATCCCATAAGTTAGGAC
1 AATCGAATGTCACATCCCATAAGTTAGGAC
*
119893190 AATCGAATGTCACATCCCGTAAGTTAGGAC
1 AATCGAATGTCACATCCCATAAGTTAGGAC
119893220 A
1 A
119893221 CGACATTTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (30 bp):
AATCGAATGTCACATCCCATAAGTTAGGAC
Found at i:119893735 original size:17 final size:17
Alignment explanation
Indices: 119893713--119893754 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
119893703 ATAGTGAGAG
* *
119893713 AAATAATATAACAAATA
1 AAATAAAATAACAAAAA
*
119893730 AAATAAAATAATAAAAA
1 AAATAAAATAACAAAAA
119893747 AAATAAAA
1 AAATAAAA
119893755 AAATGAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (17 bp):
AAATAAAATAACAAAAA
Found at i:119893739 original size:22 final size:22
Alignment explanation
Indices: 119893713--119893754 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
119893703 ATAGTGAGAG
* *
119893713 AAATAATATAACAAATAAAATA
1 AAATAATAAAAAAAATAAAATA
119893735 AAATAATAAAAAAAATAAAA
1 AAATAATAAAAAAAATAAAA
119893755 AAATGAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (22 bp):
AAATAATAAAAAAAATAAAATA
Found at i:119893744 original size:13 final size:13
Alignment explanation
Indices: 119893726--119893768 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
119893716 TAATATAACA
119893726 AATAAAATAAAAT
1 AATAAAATAAAAT
119893739 AATAAAA-AAAAT
1 AATAAAATAAAAT
* *
119893751 AAAAAAATGAAAT
1 AATAAAATAAAAT
119893764 AATAA
1 AATAA
119893769 TGACAATAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
12 11 0.42
13 15 0.58
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (13 bp):
AATAAAATAAAAT
Found at i:119895533 original size:15 final size:15
Alignment explanation
Indices: 119895513--119895542 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
119895503 TTGTTGTAAA
*
119895513 TGGACCCTTAATATT
1 TGGACCATTAATATT
119895528 TGGACCATTAATATT
1 TGGACCATTAATATT
119895543 ATTTTGGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (15 bp):
TGGACCATTAATATT
Found at i:119895891 original size:43 final size:43
Alignment explanation
Indices: 119895835--119896061 Score: 274
Period size: 43 Copynumber: 5.3 Consensus size: 43
119895825 CTGTATTTCG
* * * *
119895835 CCAATAGGTGAATTGTATAAAGTATGCTTGCGTATAGTATTCG
1 CCAATGGGCGAATTGTATAAAGTATGCTTGTGTATAGTATTCA
* *
119895878 CCAATGGGCGAATTGTATAAAGTTTGCTTATGTATAGTATTCA
1 CCAATGGGCGAATTGTATAAAGTATGCTTGTGTATAGTATTCA
* * * * * * *
119895921 CCAATTGACAAACTGTATACAGTCTGTTTGTGTATAGTATTCA
1 CCAATGGGCGAATTGTATAAAGTATGCTTGTGTATAGTATTCA
* *
119895964 CCAATAGGCGAATTGTATAAAGTATGCTTATGTATAGTATTCA
1 CCAATGGGCGAATTGTATAAAGTATGCTTGTGTATAGTATTCA
** * **
119896007 TTAATGGGCGAATTGTATAAAGTCTGCTTGTGTATAGTATTTG
1 CCAATGGGCGAATTGTATAAAGTATGCTTGTGTATAGTATTCA
119896050 CCAATGGGCGAA
1 CCAATGGGCGAA
119896062 CTATGTGTTC
Statistics
Matches: 153, Mismatches: 31, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 153 1.00
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (43 bp):
CCAATGGGCGAATTGTATAAAGTATGCTTGTGTATAGTATTCA
Found at i:119895956 original size:86 final size:86
Alignment explanation
Indices: 119895848--119896061 Score: 302
Period size: 86 Copynumber: 2.5 Consensus size: 86
119895838 ATAGGTGAAT
* * *
119895848 TGTATAAAGTATGCTTGCGTATAGTATTCGCCAATGGGCGAATTGTATAAAGTTTGCTTATGTAT
1 TGTATAAAGTCTGCTTGTGTATAGTATTCGCCAATGGGCGAATTGTATAAAGTATGCTTATGTAT
*
119895913 AGTATTCACCAATTGACAAAC
66 AGTATTCACCAATGGACAAAC
* * * *
119895934 TGTATACAGTCTGTTTGTGTATAGTATTCACCAATAGGCGAATTGTATAAAGTATGCTTATGTAT
1 TGTATAAAGTCTGCTTGTGTATAGTATTCGCCAATGGGCGAATTGTATAAAGTATGCTTATGTAT
** * * *
119895999 AGTATTCATTAATGGGCGAAT
66 AGTATTCACCAATGGACAAAC
*
119896020 TGTATAAAGTCTGCTTGTGTATAGTATTTGCCAATGGGCGAA
1 TGTATAAAGTCTGCTTGTGTATAGTATTCGCCAATGGGCGAA
119896062 CTATGTGTTC
Statistics
Matches: 110, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
86 110 1.00
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.36
Consensus pattern (86 bp):
TGTATAAAGTCTGCTTGTGTATAGTATTCGCCAATGGGCGAATTGTATAAAGTATGCTTATGTAT
AGTATTCACCAATGGACAAAC
Found at i:119900571 original size:13 final size:13
Alignment explanation
Indices: 119900553--119900607 Score: 62
Period size: 13 Copynumber: 4.5 Consensus size: 13
119900543 AGAATTTTCT
*
119900553 TAAATATCATTAC
1 TAAATATTATTAC
*
119900566 TAAATA--ATT-T
1 TAAATATTATTAC
119900576 TAAATATTATTAC
1 TAAATATTATTAC
*
119900589 TAAATATTATCAC
1 TAAATATTATTAC
119900602 TAAATA
1 TAAATA
119900608 ATTCTAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
10 6 0.17
11 3 0.08
12 3 0.08
13 24 0.67
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (13 bp):
TAAATATTATTAC
Found at i:119900754 original size:8 final size:8
Alignment explanation
Indices: 119900741--119900781 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
119900731 TTATCCAGTC
*
119900741 ATCTTTGA
1 ATCTTTCA
119900749 ATCTTT-A
1 ATCTTTCA
*
119900756 ATCTGTCA
1 ATCTTTCA
119900764 ATC-TTCA
1 ATCTTTCA
119900771 ATCTTTCA
1 ATCTTTCA
119900779 ATC
1 ATC
119900782 AAGTCCTCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 12 0.41
8 17 0.59
ACGTcount: A:0.27, C:0.22, G:0.05, T:0.46
Consensus pattern (8 bp):
ATCTTTCA
Found at i:119900766 original size:15 final size:15
Alignment explanation
Indices: 119900748--119900781 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
119900738 GTCATCTTTG
*
119900748 AATCTTTAATCTGTC
1 AATCTTCAATCTGTC
*
119900763 AATCTTCAATCTTTC
1 AATCTTCAATCTGTC
119900778 AATC
1 AATC
119900782 AAGTCCTCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.03, T:0.44
Consensus pattern (15 bp):
AATCTTCAATCTGTC
Found at i:119902450 original size:57 final size:55
Alignment explanation
Indices: 119902387--119902557 Score: 137
Period size: 57 Copynumber: 3.1 Consensus size: 55
119902377 AGATAGATAG
119902387 GATTTAGCCCGAATGGGTAATCCTGATTAAGCTCTTATGAGCATATGTTGGACACAA
1 GATTTAGCCCGAA--GGTAATCCTGATTAAGCTCTTATGAGCATATGTTGGACACAA
* * * * * * *
119902444 GATTTAG--C-----TAATCCTAATATAAGCCCTCT-TGAACGTATG--AGATAGATA
1 GATTTAGCCCGAAGGTAATCCTGAT-TAAGCTCT-TATGAGCATATGTTGGACACA-A
119902492 GAATTTAGCCCGAACAGGTAATCCTGATTAAGCTCTTATGAGCATATGTTGGACACAA
1 G-ATTTAGCCCG-A-AGGTAATCCTGATTAAGCTCTTATGAGCATATGTTGGACACAA
119902550 GATTTAGC
1 GATTTAGC
119902558 TTGGACAAGT
Statistics
Matches: 84, Mismatches: 14, Indels: 32
0.65 0.11 0.25
Matches are distributed among these distances:
47 4 0.05
48 11 0.13
49 21 0.25
50 1 0.01
51 1 0.01
55 1 0.01
56 1 0.01
57 29 0.35
58 11 0.13
59 4 0.05
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (55 bp):
GATTTAGCCCGAAGGTAATCCTGATTAAGCTCTTATGAGCATATGTTGGACACAA
Found at i:119902531 original size:106 final size:106
Alignment explanation
Indices: 119902346--119902558 Score: 381
Period size: 106 Copynumber: 2.0 Consensus size: 106
119902336 CCTAGACTGG
* * **
119902346 TAATCCTAATATAAGCCCTTTTGAACATATGAGATAGATAGGATTTAGCCCGAATGGGTAATCCT
1 TAATCCTAATATAAGCCCTCTTGAACATATGAGATAGATAGAATTTAGCCCGAACAGGTAATCCT
119902411 GATTAAGCTCTTATGAGCATATGTTGGACACAAGATTTAGC
66 GATTAAGCTCTTATGAGCATATGTTGGACACAAGATTTAGC
*
119902452 TAATCCTAATATAAGCCCTCTTGAACGTATGAGATAGATAGAATTTAGCCCGAACAGGTAATCCT
1 TAATCCTAATATAAGCCCTCTTGAACATATGAGATAGATAGAATTTAGCCCGAACAGGTAATCCT
119902517 GATTAAGCTCTTATGAGCATATGTTGGACACAAGATTTAGC
66 GATTAAGCTCTTATGAGCATATGTTGGACACAAGATTTAGC
119902558 T
1 T
119902559 TGGACAAGTA
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
106 102 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (106 bp):
TAATCCTAATATAAGCCCTCTTGAACATATGAGATAGATAGAATTTAGCCCGAACAGGTAATCCT
GATTAAGCTCTTATGAGCATATGTTGGACACAAGATTTAGC
Found at i:119902679 original size:13 final size:13
Alignment explanation
Indices: 119902661--119902690 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
119902651 GTTATTGAAT
119902661 TGTACACCTTGAG
1 TGTACACCTTGAG
119902674 TGTACACCTTGAG
1 TGTACACCTTGAG
119902687 TGTA
1 TGTA
119902691 TCCATTGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.33
Consensus pattern (13 bp):
TGTACACCTTGAG
Done.