Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 386 of 433
Found at i:120456607 original size:32 final size:32
Alignment explanation
Indices: 120456561--120456654 Score: 179
Period size: 32 Copynumber: 2.9 Consensus size: 32
120456551 ATCCTAATAG
*
120456561 TATTTTATTAATTTAATATTAAATTTAATAAA
1 TATTCTATTAATTTAATATTAAATTTAATAAA
120456593 TATTCTATTAATTTAATATTAAATTTAATAAA
1 TATTCTATTAATTTAATATTAAATTTAATAAA
120456625 TATTCTATTAATTTAATATTAAATTTAATA
1 TATTCTATTAATTTAATATTAAATTTAATA
120456655 TTAAATTTAA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 61 1.00
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (32 bp):
TATTCTATTAATTTAATATTAAATTTAATAAA
Found at i:120456680 original size:64 final size:60
Alignment explanation
Indices: 120456561--120456716 Score: 155
Period size: 64 Copynumber: 2.6 Consensus size: 60
120456551 ATCCTAATAG
* *
120456561 TATTTTATTAATTTAATATTAAATTTAATA--AATATTCTATTAATTTAATATTAAATTTAATAA
1 TATTCTATTAATTTAATATTAAATTTAATATTAA-ATTCTAATAATTTAATATT--A---AATAA
120456624 A
60 A
* *
120456625 TATTCTATTAATTTAATATTAAATTTAATATTAAATT-TAAT-GTTT-ATCTTGTAAATAAA
1 TATTCTATTAATTTAATATTAAATTTAATATTAAATTCTAATAATTTAAT-AT-TAAATAAA
120456684 TATTCTATTAATTTAATA--AAATTTAATATTAAA
1 TATTCTATTAATTTAATATTAAATTTAATATTAAA
120456717 GTGATTATGT
Statistics
Matches: 84, Mismatches: 4, Indels: 15
0.82 0.04 0.15
Matches are distributed among these distances:
57 15 0.18
59 24 0.29
62 3 0.04
63 4 0.05
64 33 0.39
65 3 0.04
66 2 0.02
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.51
Consensus pattern (60 bp):
TATTCTATTAATTTAATATTAAATTTAATATTAAATTCTAATAATTTAATATTAAATAAA
Found at i:120457705 original size:19 final size:21
Alignment explanation
Indices: 120457658--120457707 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
120457648 CCGGACTAAA
120457658 GTATCGATACTTTATATAAGG
1 GTATCGATACTTTATATAAGG
* *
120457679 GTACCGATACTTTA-CT-AGG
1 GTATCGATACTTTATATAAGG
120457698 GTATCGATAC
1 GTATCGATAC
120457708 ATATGATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 12 0.46
20 1 0.04
21 13 0.50
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (21 bp):
GTATCGATACTTTATATAAGG
Found at i:120459134 original size:19 final size:19
Alignment explanation
Indices: 120459110--120459156 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
120459100 CGATGAGCCA
120459110 GGCCGTGTGCACATGACAC
1 GGCCGTGTGCACATGACAC
120459129 GGCCGTGTGCACATGACAC
1 GGCCGTGTGCACATGACAC
120459148 GGCCGTGTG
1 GGCCGTGTG
120459157 ATGGCTGAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.17, C:0.30, G:0.36, T:0.17
Consensus pattern (19 bp):
GGCCGTGTGCACATGACAC
Found at i:120459691 original size:38 final size:38
Alignment explanation
Indices: 120459640--120459730 Score: 182
Period size: 38 Copynumber: 2.4 Consensus size: 38
120459630 TTTCAGTACA
120459640 ACATGGTGTGTAGGGATGGATGGGTTGATTTAATCCCC
1 ACATGGTGTGTAGGGATGGATGGGTTGATTTAATCCCC
120459678 ACATGGTGTGTAGGGATGGATGGGTTGATTTAATCCCC
1 ACATGGTGTGTAGGGATGGATGGGTTGATTTAATCCCC
120459716 ACATGGTGTGTAGGG
1 ACATGGTGTGTAGGG
120459731 TTGCACGGAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.21, C:0.12, G:0.36, T:0.31
Consensus pattern (38 bp):
ACATGGTGTGTAGGGATGGATGGGTTGATTTAATCCCC
Found at i:120465783 original size:22 final size:22
Alignment explanation
Indices: 120465758--120465801 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
120465748 AACTTTGGAG
120465758 TAGTTGATAAATCAATCACCTT
1 TAGTTGATAAATCAATCACCTT
120465780 TAGTTGATAAATCAATCACCTT
1 TAGTTGATAAATCAATCACCTT
120465802 GGTTTTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (22 bp):
TAGTTGATAAATCAATCACCTT
Found at i:120466175 original size:13 final size:13
Alignment explanation
Indices: 120466157--120466181 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
120466147 GCATCCAAGT
120466157 TCCTTTGAATAAG
1 TCCTTTGAATAAG
120466170 TCCTTTGAATAA
1 TCCTTTGAATAA
120466182 CCTGGTGCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (13 bp):
TCCTTTGAATAAG
Found at i:120467290 original size:20 final size:20
Alignment explanation
Indices: 120467256--120467312 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
120467246 GAAATGTATA
120467256 TTTGAAT-TT-TTTTTAAAT
1 TTTGAATATTATTTTTAAAT
120467274 TTTGAATATTATTTTTAAAT
1 TTTGAATATTATTTTTAAAT
* *
120467294 ATTAAATATATATTTTTAA
1 TTTGAATAT-TATTTTTAA
120467313 TAATATAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 7 0.21
19 2 0.06
20 16 0.47
21 9 0.26
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.60
Consensus pattern (20 bp):
TTTGAATATTATTTTTAAAT
Found at i:120467307 original size:21 final size:20
Alignment explanation
Indices: 120467265--120467326 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
120467255 ATTTGAATTT
* *
120467265 TTTTTAAATTTTGAATATTA
1 TTTTTAAATATTAAATATTA
120467285 TTTTTAAATATTAAATATATA
1 TTTTTAAATATTAAATAT-TA
*
120467306 TTTTTAATAATATAAAATATT
1 TTTTT-A-AATATTAAATATT
120467327 TAAATATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 16 0.44
21 7 0.19
22 2 0.06
23 11 0.31
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
TTTTTAAATATTAAATATTA
Found at i:120467323 original size:23 final size:20
Alignment explanation
Indices: 120467278--120467326 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 20
120467268 TTAAATTTTG
*
120467278 AATATTATTTTTAAATATTA
1 AATATTATTTTTAAATATAA
120467298 AATATATATTTTTAATAATATAA
1 AATAT-TATTTTT-A-AATATAA
120467321 AATATT
1 AATATT
120467327 TAAATATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 5 0.20
21 7 0.28
22 2 0.08
23 11 0.44
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
AATATTATTTTTAAATATAA
Found at i:120467452 original size:14 final size:14
Alignment explanation
Indices: 120467425--120467463 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
120467415 AATATATATT
120467425 TAATATTT-AAAAG
1 TAATATTTAAAAAG
*
120467438 TAGTATTTAAAAAG
1 TAATATTTAAAAAG
120467452 TAATATTTAAAA
1 TAATATTTAAAA
120467464 TTTTAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 7 0.30
14 16 0.70
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (14 bp):
TAATATTTAAAAAG
Found at i:120467493 original size:35 final size:34
Alignment explanation
Indices: 120467410--120467524 Score: 119
Period size: 34 Copynumber: 3.3 Consensus size: 34
120467400 TTTTATATTA
* *
120467410 TTAAAAATATATATTTAATATTT-AAAAGTAGTAT
1 TTAAAAATATATATTTAAAATTTAAAAAATAG-AT
120467444 TTAAAAAGTA-ATATTTAAAATTTTAAAAAATA-AT
1 TTAAAAA-TATATATTTAAAA-TTTAAAAAATAGAT
* *
120467478 TTAAAATATATATATTTAAAATTTAAAATATATAT
1 TTAAAA-ATATATATTTAAAATTTAAAAAATAGAT
120467513 GTTATAAAATAT
1 -TTA-AAAATAT
120467525 TTCAAATATA
Statistics
Matches: 70, Mismatches: 3, Indels: 14
0.80 0.03 0.16
Matches are distributed among these distances:
34 36 0.51
35 18 0.26
36 13 0.19
37 3 0.04
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (34 bp):
TTAAAAATATATATTTAAAATTTAAAAAATAGAT
Found at i:120467503 original size:22 final size:23
Alignment explanation
Indices: 120467475--120467522 Score: 80
Period size: 22 Copynumber: 2.1 Consensus size: 23
120467465 TTTAAAAAAT
120467475 AATTTAAAATATATATATT-TAA
1 AATTTAAAATATATATATTATAA
*
120467497 AATTTAAAATATATATGTTATAA
1 AATTTAAAATATATATATTATAA
120467520 AAT
1 AAT
120467523 ATTTCAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (23 bp):
AATTTAAAATATATATATTATAA
Found at i:120471596 original size:12 final size:12
Alignment explanation
Indices: 120471576--120471605 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
120471566 AATATTGTTT
*
120471576 TAATGAATTTAA
1 TAATTAATTTAA
120471588 TAATTAATTTAA
1 TAATTAATTTAA
120471600 TAATTA
1 TAATTA
120471606 TCTAGATAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (12 bp):
TAATTAATTTAA
Found at i:120473054 original size:42 final size:42
Alignment explanation
Indices: 120472993--120473148 Score: 190
Period size: 42 Copynumber: 3.7 Consensus size: 42
120472983 TTGTTTTCTC
** * *
120472993 GATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAAT
1 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
*
120473035 GATGCCATAGCCCAGCTATGGTCTTACACATATTCATAT-AT
1 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
* *
120473076 CGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATACCA-
1 -GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA--AT
* *
120473120 CATGCCATAGCCCAGCTATGGTTTTACAC
1 GATGCCATAGCCCAGCTATGGTCTTACAC
120473149 GAATCACATA
Statistics
Matches: 100, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
41 2 0.02
42 70 0.70
43 27 0.27
45 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (42 bp):
GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
Found at i:120473139 original size:43 final size:43
Alignment explanation
Indices: 120473036--120473191 Score: 181
Period size: 42 Copynumber: 3.6 Consensus size: 43
120473026 TCACATAATG
* * * * *
120473036 ATGCCATAGCCCAGCTATGGTCTTACACATATTCATATATC-G
1 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATACCAC
120473078 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATACCAC
1 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATACCAC
*
120473121 ATGCCATAGCCCAGCTATGGTTTTACACG-AATCACATATCTCAC
1 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATA-C-CAC
* * *
120473165 TGATGTCATATCCCAGATATGGTCTTA
1 --ATGCCATAGCCCAGCTATGGTCTTA
120473192 TACAGTAGCA
Statistics
Matches: 99, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
42 46 0.46
43 29 0.29
44 3 0.03
46 21 0.21
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (43 bp):
ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATACCAC
Found at i:120473160 original size:84 final size:84
Alignment explanation
Indices: 120472991--120473160 Score: 211
Period size: 84 Copynumber: 2.0 Consensus size: 84
120472981 CTTTGTTTTC
** ** *
120472991 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAATGATGCCATAGCCCAGCTATGG
1 TCGATGCCATAGCCCAACTATGGTCTTACACATAATCACATAATCATGCCATAGCCCAGCTATGG
*
120473056 TCTTACACATATTCATATA
66 TCTTACACATATTCACATA
* *
120473075 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATACCA-CATGCCATAGCCCAGCTAT
1 TCGATGCCATAGCCCAACTATGGTCTTACACATAATCACATA--ATCATGCCATAGCCCAGCTAT
*
120473139 GGTTTTACACGA-A-TCACATA
64 GGTCTTACAC-ATATTCACATA
120473159 TC
1 TC
120473161 TCACTGATGT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
84 44 0.59
85 28 0.38
86 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (84 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATAATCACATAATCATGCCATAGCCCAGCTATGG
TCTTACACATATTCACATA
Found at i:120473223 original size:47 final size:46
Alignment explanation
Indices: 120473035--120473243 Score: 186
Period size: 47 Copynumber: 4.7 Consensus size: 46
120473025 TTCACATAAT
* * * *
120473035 GATGCCATAGCCCAGCTATGGTCTTACACA-TAT-TCATAT--ATC
1 GATGCCATAGCCCAGATATGGTCTTATACAGTATCACATATCCACC
* *
120473077 GATGCCATAGCCCAGCTATGGTCTTACAC-GTAATCACATA-CCA-C
1 GATGCCATAGCCCAGATATGGTCTTATACAGT-ATCACATATCCACC
* * *
120473121 -ATGCCATAGCCCAGCTATGGT-TT-TACACGAATCACATATCTCACT
1 GATGCCATAGCCCAGATATGGTCTTATACA-GTATCACATATC-CACC
* * * *
120473166 GATGTCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACC
1 GATGCCATAGCCCAGATATGGTCTTATACAGTATCACATATC-CACC
*
120473213 GATGCCATATCCCAGATATGGTCTTATACAG
1 GATGCCATAGCCCAGATATGGTCTTATACAG
120473244 AAATCACTTG
Statistics
Matches: 141, Mismatches: 13, Indels: 21
0.81 0.07 0.12
Matches are distributed among these distances:
41 2 0.01
42 40 0.28
43 25 0.18
44 7 0.05
45 1 0.01
46 18 0.13
47 44 0.31
48 4 0.03
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (46 bp):
GATGCCATAGCCCAGATATGGTCTTATACAGTATCACATATCCACC
Found at i:120473302 original size:31 final size:30
Alignment explanation
Indices: 120473267--120473415 Score: 199
Period size: 31 Copynumber: 4.8 Consensus size: 30
120473257 CTTGTCACTT
* *
120473267 GTAGCTGAAGCTACCACTATTCACTGATTAG
1 GTAGC-GAAGCTACCACTTTTCACTGATCAG
* * *
120473298 GTAGCCGGAGCTACCATTTTTCACTGATCTG
1 GTAG-CGAAGCTACCACTTTTCACTGATCAG
*
120473329 GTAGCCAGAGCTACCACTTTTCACTGATCAG
1 GTAGCGA-AGCTACCACTTTTCACTGATCAG
120473360 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGC-GAAGCTACCACTTTTCACTGATCAG
120473391 GTAGCGGAAGCTACCACTTTTCACT
1 GTAGC-GAAGCTACCACTTTTCACT
120473416 TGTCATTTGT
Statistics
Matches: 104, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
30 1 0.01
31 101 0.97
32 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (30 bp):
GTAGCGAAGCTACCACTTTTCACTGATCAG
Found at i:120473513 original size:49 final size:51
Alignment explanation
Indices: 120473391--120473518 Score: 188
Period size: 50 Copynumber: 2.5 Consensus size: 51
120473381 CACTGATCAG
* * * *
120473391 GTAGCGGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCATTGATCAGATAAGT
*
120473442 GTAGCCGAAGCTATCACTTATCACTT-TCACTTGTCTTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCATTGATCAGATAAGT
*
120473492 G-GGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
120473519 TGCCATGGTC
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
49 23 0.33
50 24 0.34
51 23 0.33
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCATTGATCAGATAAGT
Found at i:120476023 original size:34 final size:34
Alignment explanation
Indices: 120475980--120476051 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
120475970 TTTTAAAGAT
120475980 TTTTACAATTAGGTCCAACTAGCTAGTACCTTAG
1 TTTTACAATTAGGTCCAACTAGCTAGTACCTTAG
120476014 TTTTACAATTAGGTCCAACTAGCTAGTACCTTAG
1 TTTTACAATTAGGTCCAACTAGCTAGTACCTTAG
120476048 TTTT
1 TTTT
120476052 TGATTTTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (34 bp):
TTTTACAATTAGGTCCAACTAGCTAGTACCTTAG
Found at i:120476085 original size:32 final size:32
Alignment explanation
Indices: 120476044--120476110 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
120476034 AGCTAGTACC
120476044 TTAGTTTTTGATTTTATTGAGAATTTTGAAAG
1 TTAGTTTTTGATTTTATTGAGAATTTTGAAAG
120476076 TTAGTTTTTGATTTTATTGAGAATTTTGAAAG
1 TTAGTTTTTGATTTTATTGAGAATTTTGAAAG
120476108 TTA
1 TTA
120476111 CCATTGATGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.28, C:0.00, G:0.18, T:0.54
Consensus pattern (32 bp):
TTAGTTTTTGATTTTATTGAGAATTTTGAAAG
Found at i:120477542 original size:3 final size:3
Alignment explanation
Indices: 120477534--120477764 Score: 269
Period size: 3 Copynumber: 76.7 Consensus size: 3
120477524 TAAAAAGATG
120477534 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
120477581 ATAA ATAA ATAA ATA ATA GTA A-A AAA ATA GTA ATA ATA ATA ATA ATG
1 AT-A AT-A AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
120477628 ATA ATAA ATA ATA ATA GTAA ATA ATA ATA ATA GTA A-A A-A AGTA ATA
1 ATA AT-A ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA A-TA ATA
*
120477674 ATA GTA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
120477722 ATA ATA ATA ATA ATA A-A ATTA ATTA AT- TTA ATA ATA A-A ATA AT
1 ATA ATA ATA ATA ATA ATA A-TA A-TA ATA ATA ATA ATA ATA ATA AT
120477765 CGAAAGAACA
Statistics
Matches: 202, Mismatches: 15, Indels: 22
0.85 0.06 0.09
Matches are distributed among these distances:
2 13 0.06
3 165 0.82
4 24 0.12
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:120478466 original size:15 final size:14
Alignment explanation
Indices: 120478433--120478463 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
120478423 ATGTAGTTTC
*
120478433 AAAGAAGAAAAATA
1 AAAGAAAAAAAATA
120478447 AAAGAAAAAAAATA
1 AAAGAAAAAAAATA
120478461 AAA
1 AAA
120478464 AGATGATAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.10, T:0.06
Consensus pattern (14 bp):
AAAGAAAAAAAATA
Found at i:120479230 original size:44 final size:44
Alignment explanation
Indices: 120479171--120479386 Score: 163
Period size: 44 Copynumber: 4.8 Consensus size: 44
120479161 GATTTGTTAT
*
120479171 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGG
* * * *
120479215 CTTCAATCTCCTCCACTACAACTTCAGGGAGATAAGATCCGCCATAATTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG----G-C-----TGGTGG
* * * *
120479269 CTTCAATCTGTTCCACTGCAACTTCAAGGAAATAA-GAT--T--
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGG
* * ** *
120479308 CTTCAGTCTACTCTGCTGTAACTTCAGGGAGATAAGGCTGGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGG
* *
120479352 CTTCAATCTGCTCCACTGCAACTTTAGGAAGATAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
120479387 AATTCACCAT
Statistics
Matches: 130, Mismatches: 27, Indels: 30
0.70 0.14 0.16
Matches are distributed among these distances:
39 27 0.21
40 2 0.02
41 1 0.01
42 1 0.01
43 1 0.01
44 61 0.47
48 1 0.01
49 2 0.02
54 34 0.26
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGG
Found at i:120479524 original size:143 final size:143
Alignment explanation
Indices: 120479157--120479654 Score: 695
Period size: 143 Copynumber: 3.5 Consensus size: 143
120479147 CGTAAAGGGG
* *
120479157 ATAAGATTTGTTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT
1 ATAAGATTTGCTATCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT
* *
120479222 CTCCTCCACTACAACTTCAGGGAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACTG
66 CTGCTCCACTACAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACTG
120479287 CAACTTCAAGGAA
131 CAACTTCAAGGAA
* * *
120479300 ATAAGA-----T-TCTTCAGTCTACTCTGCTGTAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT
1 ATAAGATTTGCTATCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT
* * * * * * *
120479359 CTGCTCCACTGCAACTTTAGGAAGATAAAATTCACCATAATTTGTAGCTTCAATCTGTTCCATTA
66 CTGCTCCACTACAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACTG
120479424 CAACTTCAAGGAA
131 CAACTTCAAGGAA
* * * * *
120479437 ATAGGATTTGCTATCTTTAGTCTGCTCCGCTGCAACTTCAGGGAGATACGGCAGTTGGCTTCAAT
1 ATAAGATTTGCTATCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT
*
120479502 CTACTCCACTACAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACTG
66 CTGCTCCACTACAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACTG
* *
120479567 TAACTTCAGGGAA
131 CAACTTCAAGGAA
* * * * *
120479580 ATAAGATTCGTTGTCTTCAGTCTGCTCCGCTGAAAC-TCTAGGGAGATAAGACTGGTGGCTTCAA
1 ATAAGATTTGCTATCTTCAGTCTGCTCCGCTGCAACTTC-AGGGAGATAAGGCTGGTGGCTTCAA
120479644 TCTGCTCCACT
65 TCTGCTCCACT
120479655 GCTACTCCAG
Statistics
Matches: 306, Mismatches: 42, Indels: 14
0.85 0.12 0.04
Matches are distributed among these distances:
137 122 0.40
138 1 0.00
142 3 0.01
143 180 0.59
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (143 bp):
ATAAGATTTGCTATCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT
CTGCTCCACTACAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACTG
CAACTTCAAGGAA
Found at i:120479649 original size:44 final size:45
Alignment explanation
Indices: 120479548--120479655 Score: 121
Period size: 45 Copynumber: 2.4 Consensus size: 45
120479538 ATAATTTGTA
* * * *
120479548 GCTTCAATCTGTTCCACTGTAACTTCAGGGAAATAAGATTCGTTG
1 GCTTCAATCTGCTCCACTGAAACTTCAGGGAAATAAGACTCGGTG
* * * *
120479593 TCTTCAGTCTGCTCCGCTGAAAC-TCTAGGGAGATAAGACT-GGTG
1 GCTTCAATCTGCTCCACTGAAACTTC-AGGGAAATAAGACTCGGTG
120479637 GCTTCAATCTGCTCCACTG
1 GCTTCAATCTGCTCCACTG
120479656 CTACTCCAGA
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
44 21 0.41
45 30 0.59
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.31
Consensus pattern (45 bp):
GCTTCAATCTGCTCCACTGAAACTTCAGGGAAATAAGACTCGGTG
Found at i:120479670 original size:44 final size:44
Alignment explanation
Indices: 120479548--120479670 Score: 113
Period size: 44 Copynumber: 2.8 Consensus size: 44
120479538 ATAATTTGTA
* * * * *
120479548 GCTTCAATCTGTTCCACTGTAACTTCAGGGAAATAAGATTCGTTG
1 GCTTCAATCTGCTCCACTGT-ACTCCAGGGAGATAAGACTCGGTG
* * * * *
120479593 TCTTCAGTCTGCTCCGCTGAAACTCTAGGGAGATAAGACT-GGTG
1 GCTTCAATCTGCTCCACTG-TACTCCAGGGAGATAAGACTCGGTG
*
120479637 GCTTCAATCTGCTCCACTGCTACTCCAGAGAGAT
1 GCTTCAATCTGCTCCACTG-TACTCCAGGGAGAT
120479671 GAGATTTACG
Statistics
Matches: 60, Mismatches: 17, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
44 30 0.50
45 30 0.50
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (44 bp):
GCTTCAATCTGCTCCACTGTACTCCAGGGAGATAAGACTCGGTG
Found at i:120480510 original size:12 final size:13
Alignment explanation
Indices: 120480493--120480524 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
120480483 CTTTGGCCTC
120480493 TCTTTTTTC-TTT
1 TCTTTTTTCTTTT
120480505 TC-TTTTTCTTTT
1 TCTTTTTTCTTTT
120480517 TCTTTTTT
1 TCTTTTTT
120480525 TTAAAGTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 6 0.33
12 7 0.39
13 5 0.28
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TCTTTTTTCTTTT
Found at i:120480922 original size:3 final size:3
Alignment explanation
Indices: 120480914--120480957 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
120480904 CCACGATCTC
120480914 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
120480958 TTGTTGTCTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:120481286 original size:20 final size:19
Alignment explanation
Indices: 120481245--120481287 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
120481235 GTCTCTTTTG
* **
120481245 TGAAATTCAATGCATGTGA
1 TGAAATACAATGCATGAAA
120481264 TGAAATACAGATGCATGAAA
1 TGAAATACA-ATGCATGAAA
120481284 TGAA
1 TGAA
120481288 TGCAAAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.44, C:0.09, G:0.21, T:0.26
Consensus pattern (19 bp):
TGAAATACAATGCATGAAA
Found at i:120483497 original size:29 final size:29
Alignment explanation
Indices: 120483455--120483513 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
120483445 AAAGAAATCA
*
120483455 TATTCCATAAGTTAGAATATGATTTTTTC
1 TATTCCATAAGTTAGAATACGATTTTTTC
120483484 TATTCCATAAGTTAGAATACGATTTTTTC
1 TATTCCATAAGTTAGAATACGATTTTTTC
120483513 T
1 T
120483514 TAATTTTCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.47
Consensus pattern (29 bp):
TATTCCATAAGTTAGAATACGATTTTTTC
Found at i:120483921 original size:3 final size:3
Alignment explanation
Indices: 120483907--120484111 Score: 170
Period size: 3 Copynumber: 68.7 Consensus size: 3
120483897 AATTAAAAAG
* * * * *
120483907 ATA ATG ATA ATA ATAA ATA GTA GTA A-A AAA ATA ATA GTA ATA ATA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
120483952 ATA ATG ATA ATAA ATA ATA ATA GTA A-A ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
120483997 ATA ATA ATA ATA ATG ATA ATGA ATA ATA ATA GTA A-A AAA ATA GTA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA
* * ** *
120484042 ATA ATA ATA ATG ATA AAA ATA ATA ATA GCA ATA ATA ATA TTA A-A ATTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
*
120484090 ATTA AT- TTA ATA ATA A-A ATA AT
1 A-TA ATA ATA ATA ATA ATA ATA AT
120484112 CGAAATAACC
Statistics
Matches: 162, Mismatches: 30, Indels: 20
0.76 0.14 0.09
Matches are distributed among these distances:
2 11 0.07
3 136 0.84
4 15 0.09
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:120484013 original size:54 final size:54
Alignment explanation
Indices: 120483936--120484111 Score: 214
Period size: 54 Copynumber: 3.3 Consensus size: 54
120483926 GTAGTAAAAA
*
120483936 AATAATAGTAATAATAATAATGATAATAAATAATAATAGTAAAATAATAATAAT
1 AATAATAATAATAATAATAATGATAATAAATAATAATAGTAAAATAATAATAAT
* * *
120483990 AATAATAATAATAATAATAATGATAATGAATAATAATAGTAAAAAAATAGTAAT
1 AATAATAATAATAATAATAATGATAATAAATAATAATAGTAAAATAATAATAAT
* * * ** * *
120484044 AATAATAATGATAAAAATAATAAT-AGCAATAATAATATTAAAATTAATTAAT-TT
1 AATAATAATAATAATAATAATGATAATAAATAATAATAGTAAAA-TAA-TAATAAT
120484098 AATAATAA-AATAAT
1 AATAATAATAATAAT
120484112 CGAAATAACC
Statistics
Matches: 105, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
53 20 0.19
54 82 0.78
55 3 0.03
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (54 bp):
AATAATAATAATAATAATAATGATAATAAATAATAATAGTAAAATAATAATAAT
Found at i:120484805 original size:13 final size:13
Alignment explanation
Indices: 120484780--120484813 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
120484770 ATGTAGTTTC
120484780 AAAGAAGAAAAATA
1 AAAGAA-AAAAATA
120484794 AAAGAAAAAAATA
1 AAAGAAAAAAATA
120484807 AAA-AAAA
1 AAAGAAAA
120484814 GATGTTAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 4 0.20
13 10 0.50
14 6 0.30
ACGTcount: A:0.85, C:0.00, G:0.09, T:0.06
Consensus pattern (13 bp):
AAAGAAAAAAATA
Found at i:120485163 original size:20 final size:20
Alignment explanation
Indices: 120485124--120485163 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
120485114 CTGTGAAGGC
*
120485124 ACGTGGGCAGCGGCGCAGGA
1 ACGTGGGCAGCGGCACAGGA
*
120485144 ACGTGGGCAGCGGCATAGGA
1 ACGTGGGCAGCGGCACAGGA
120485164 GGGGCTAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.23, G:0.47, T:0.07
Consensus pattern (20 bp):
ACGTGGGCAGCGGCACAGGA
Found at i:120485653 original size:42 final size:42
Alignment explanation
Indices: 120485584--120485720 Score: 175
Period size: 42 Copynumber: 3.3 Consensus size: 42
120485574 TAGCTTTCAA
* * * *
120485584 GAGCTTCTGTTCAACTCATATGAGTTTCCGTTCAGCTCTTTT
1 GAGCTTCTGTTCAACCCTTATGGGTTTCCGTTCAGCTCTTAT
* *
120485626 GAGCTTCTATTTAACCCTTATGGGTTTCCGTTCAGCTCTTAT
1 GAGCTTCTGTTCAACCCTTATGGGTTTCCGTTCAGCTCTTAT
* * *
120485668 GAGCTTCTGTTCAACCCTTATGGGTTTCTGTTTAGCACTTAT
1 GAGCTTCTGTTCAACCCTTATGGGTTTCCGTTCAGCTCTTAT
* *
120485710 GTGCTTTTGTT
1 GAGCTTCTGTT
120485721 TAGCCTTCGA
Statistics
Matches: 82, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 82 1.00
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.45
Consensus pattern (42 bp):
GAGCTTCTGTTCAACCCTTATGGGTTTCCGTTCAGCTCTTAT
Found at i:120485696 original size:21 final size:21
Alignment explanation
Indices: 120485588--120485699 Score: 98
Period size: 21 Copynumber: 5.3 Consensus size: 21
120485578 TTTCAAGAGC
*
120485588 TTCTGTTCAACTCATATGAGT
1 TTCTGTTCAACTCTTATGAGT
* * * *
120485609 TTCCGTTCAGCTCTTTTGAGC
1 TTCTGTTCAACTCTTATGAGT
* * * *
120485630 TTCTATTTAACCCTTATGGGT
1 TTCTGTTCAACTCTTATGAGT
* * *
120485651 TTCCGTTCAGCTCTTATGAGC
1 TTCTGTTCAACTCTTATGAGT
* *
120485672 TTCTGTTCAACCCTTATGGGT
1 TTCTGTTCAACTCTTATGAGT
120485693 TTCTGTT
1 TTCTGTT
120485700 TAGCACTTAT
Statistics
Matches: 66, Mismatches: 25, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 66 1.00
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.45
Consensus pattern (21 bp):
TTCTGTTCAACTCTTATGAGT
Found at i:120485708 original size:21 final size:21
Alignment explanation
Indices: 120485642--120485710 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 21
120485632 CTATTTAACC
* *
120485642 CTTATGGGTTTCCGTTCAGCT
1 CTTATGGGTTTCTGTTCAGCA
* * * *
120485663 CTTATGAGCTTCTGTTCAACC
1 CTTATGGGTTTCTGTTCAGCA
*
120485684 CTTATGGGTTTCTGTTTAGCA
1 CTTATGGGTTTCTGTTCAGCA
120485705 CTTATG
1 CTTATG
120485711 TGCTTTTGTT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.14, C:0.22, G:0.20, T:0.43
Consensus pattern (21 bp):
CTTATGGGTTTCTGTTCAGCA
Found at i:120486598 original size:230 final size:230
Alignment explanation
Indices: 120486195--120486664 Score: 931
Period size: 230 Copynumber: 2.0 Consensus size: 230
120486185 TTATATATGT
120486195 ATGTGTCATTTTATCTTGCTTGATATATGTTTAGATGTGAATAATTGATGGATAAGTTATAGCCA
1 ATGTGTCATTTTATCTTGCTTGATATATGTTTAGATGTGAATAATTGATGGATAAGTTATAGCCA
120486260 TGTTGGTGAATGTGTAAATTGATTAATGTGGTAGTTTAGAATGTTAGGATATATGTGATAATATG
66 TGTTGGTGAATGTGTAAATTGATTAATGTGGTAGTTTAGAATGTTAGGATATATGTGATAATATG
120486325 ATATTTTTAGAGCTAAGAATTTGGTTGTATTGAAGTTCTTGTTATGGCCTATGAGCATGAAAATT
131 ATATTTTTAGAGCTAAGAATTTGGTTGTATTGAAGTTCTTGTTATGGCCTATGAGCATGAAAATT
120486390 GAGGTGTTTAGGTTGAAATTAAGAAAATGTGACAA
196 GAGGTGTTTAGGTTGAAATTAAGAAAATGTGACAA
120486425 ATGTGTCATTTTATCTTGCTTGATATATGTTTAGATGTGAATAATTGATGGATAAGTTATAGCCA
1 ATGTGTCATTTTATCTTGCTTGATATATGTTTAGATGTGAATAATTGATGGATAAGTTATAGCCA
120486490 TGTTGGTGAATGTGTAAATTGATTAATGTGGTAGTTTAGAATGTTAGGATATATGTGATAATATG
66 TGTTGGTGAATGTGTAAATTGATTAATGTGGTAGTTTAGAATGTTAGGATATATGTGATAATATG
120486555 ATATTTTTAGAGCTAAGAATTTGGTTGTATTGAAGTTCTTGTTATGGCCTATGAGCATGAAAATT
131 ATATTTTTAGAGCTAAGAATTTGGTTGTATTGAAGTTCTTGTTATGGCCTATGAGCATGAAAATT
120486620 GAGGTGTTTAGGTTGAAATTAAGAAAATGTGACAA
196 GAGGTGTTTAGGTTGAAATTAAGAAAATGTGACAA
*
120486655 ATGTGGCATT
1 ATGTGTCATT
120486665 AAAATGGTCG
Statistics
Matches: 239, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
230 239 1.00
ACGTcount: A:0.31, C:0.05, G:0.24, T:0.40
Consensus pattern (230 bp):
ATGTGTCATTTTATCTTGCTTGATATATGTTTAGATGTGAATAATTGATGGATAAGTTATAGCCA
TGTTGGTGAATGTGTAAATTGATTAATGTGGTAGTTTAGAATGTTAGGATATATGTGATAATATG
ATATTTTTAGAGCTAAGAATTTGGTTGTATTGAAGTTCTTGTTATGGCCTATGAGCATGAAAATT
GAGGTGTTTAGGTTGAAATTAAGAAAATGTGACAA
Found at i:120490034 original size:26 final size:22
Alignment explanation
Indices: 120489994--120490049 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 22
120489984 ATAAAGTACA
120489994 AAATATTAAAATTATGAATAATAATT
1 AAATA-TAAAATTAT-AA-AAT-ATT
*
120490020 AAATATAAAATTTATAAAATGTT
1 AAATATAAAA-TTATAAAATATT
120490043 AAATATA
1 AAATATA
120490050 TTTGGGAGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 9 0.32
24 3 0.11
25 7 0.25
26 9 0.32
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
AAATATAAAATTATAAAATATT
Found at i:120492346 original size:20 final size:19
Alignment explanation
Indices: 120492312--120492351 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
120492302 ACTCTTTTAA
120492312 TATATTTTATATAA-TATT
1 TATATTTTATATAATTATT
120492330 TATATTTTATATGTAATTATT
1 TATATTTTATA--TAATTATT
120492351 T
1 T
120492352 TCCTATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 11 0.58
20 3 0.16
21 5 0.26
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (19 bp):
TATATTTTATATAATTATT
Found at i:120494400 original size:19 final size:20
Alignment explanation
Indices: 120494357--120494402 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
120494347 TAAATATCAC
120494357 ATTTTAT-TTTCATATAATA
1 ATTTTATATTTCATATAATA
*
120494376 AATTTATATTTCATATAA-A
1 ATTTTATATTTCATATAATA
120494395 ATTTTATA
1 ATTTTATA
120494403 AATGATACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTTTATATTTCATATAATA
Found at i:120494868 original size:25 final size:27
Alignment explanation
Indices: 120494820--120494872 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
120494810 TTAAATATTT
120494820 TTTTTAAAAATAAGTTCACCTAATTTTA
1 TTTTTAAAAATAAGTTCA-CTAATTTTA
*
120494848 TTTTTAAAAATATG-TCA-TAATTTTA
1 TTTTTAAAAATAAGTTCACTAATTTTA
120494873 CTTATTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 8 0.33
27 3 0.12
28 13 0.54
ACGTcount: A:0.40, C:0.08, G:0.04, T:0.49
Consensus pattern (27 bp):
TTTTTAAAAATAAGTTCACTAATTTTA
Found at i:120502310 original size:20 final size:20
Alignment explanation
Indices: 120502287--120502326 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
120502277 TACTCAAACA
* *
120502287 ATATTACTTGAATAGTTATG
1 ATATTACATGAATAATTATG
*
120502307 ATATTAGATGAATAATTATG
1 ATATTACATGAATAATTATG
120502327 TCTATTTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.03, G:0.15, T:0.42
Consensus pattern (20 bp):
ATATTACATGAATAATTATG
Found at i:120504361 original size:34 final size:36
Alignment explanation
Indices: 120504285--120504363 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 36
120504275 GCACTAAACA
* * *
120504285 AATTAGAAAACAATGAAAACAAGGAGATATTAAATC
1 AATTTGAAAACAATGAAAACAAGAAGATATGAAATC
* *
120504321 AATTTGAAAACAATGAAAGCAAGAAGA-A-GCAATC
1 AATTTGAAAACAATGAAAACAAGAAGATATGAAATC
*
120504355 AGTTTGAAA
1 AATTTGAAA
120504364 GATCTTCTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
34 12 0.32
35 1 0.03
36 24 0.65
ACGTcount: A:0.56, C:0.09, G:0.16, T:0.19
Consensus pattern (36 bp):
AATTTGAAAACAATGAAAACAAGAAGATATGAAATC
Found at i:120505150 original size:24 final size:24
Alignment explanation
Indices: 120505122--120505171 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
120505112 AATCTTATGT
120505122 TAGCAAGAAAGTTTAGTTTAAAAC
1 TAGCAAGAAAGTTTAGTTTAAAAC
120505146 TAGCAAGAAAGTTTAGTTTAAAAC
1 TAGCAAGAAAGTTTAGTTTAAAAC
120505170 TA
1 TA
120505172 CTTCTTGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.08, G:0.16, T:0.30
Consensus pattern (24 bp):
TAGCAAGAAAGTTTAGTTTAAAAC
Found at i:120505952 original size:14 final size:15
Alignment explanation
Indices: 120505935--120505968 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
120505925 AAGTGATAAA
120505935 AAAATAC-AAAAAAT
1 AAAATACAAAAAAAT
120505949 AAAATACGAAAAAAAT
1 AAAATAC-AAAAAAAT
120505965 AAAA
1 AAAA
120505969 AAAAATTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
16 11 0.61
ACGTcount: A:0.79, C:0.06, G:0.03, T:0.12
Consensus pattern (15 bp):
AAAATACAAAAAAAT
Found at i:120507894 original size:15 final size:15
Alignment explanation
Indices: 120507874--120507919 Score: 92
Period size: 15 Copynumber: 3.1 Consensus size: 15
120507864 AAATGAGGAG
120507874 TGGTTATGTTTTAAC
1 TGGTTATGTTTTAAC
120507889 TGGTTATGTTTTAAC
1 TGGTTATGTTTTAAC
120507904 TGGTTATGTTTTAAC
1 TGGTTATGTTTTAAC
120507919 T
1 T
120507920 AACTCTAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.20, C:0.07, G:0.20, T:0.54
Consensus pattern (15 bp):
TGGTTATGTTTTAAC
Found at i:120508690 original size:24 final size:24
Alignment explanation
Indices: 120508662--120508711 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
120508652 AATCTTATGT
120508662 TAGCAAGAAAGTTTAGTTTAAAAC
1 TAGCAAGAAAGTTTAGTTTAAAAC
120508686 TAGCAAGAAAGTTTAGTTTAAAAC
1 TAGCAAGAAAGTTTAGTTTAAAAC
120508710 TA
1 TA
120508712 CTTCTTGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.08, G:0.16, T:0.30
Consensus pattern (24 bp):
TAGCAAGAAAGTTTAGTTTAAAAC
Found at i:120514380 original size:6 final size:6
Alignment explanation
Indices: 120514363--120514391 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
120514353 AAAGTCTAAC
120514363 GCTTTT -CTTTT GCTTTT GCTTTT GCTTTT
1 GCTTTT GCTTTT GCTTTT GCTTTT GCTTTT
120514392 TGTTTGCCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.00, C:0.17, G:0.14, T:0.69
Consensus pattern (6 bp):
GCTTTT
Found at i:120514852 original size:1 final size:1
Alignment explanation
Indices: 120514846--120514882 Score: 74
Period size: 1 Copynumber: 37.0 Consensus size: 1
120514836 TGGTGTACTC
120514846 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
120514883 GTGATTGTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 36 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:120516663 original size:9 final size:9
Alignment explanation
Indices: 120516649--120516801 Score: 69
Period size: 9 Copynumber: 15.8 Consensus size: 9
120516639 GACTTTCACG
120516649 AATTTTTAT
1 AATTTTTAT
120516658 AATTTTTTAT
1 AA-TTTTTAT
*
120516668 GATTTTTAT
1 AATTTTTAT
120516677 AATTTTTAT
1 AATTTTTAT
*
120516686 ATATTTTTTTT
1 A-A-TTTTTAT
*
120516697 TATTTTTAT
1 AATTTTTAT
*
120516706 GATTTTCTTAT
1 -AATTT-TTAT
*
120516717 CATTTTTA-
1 AATTTTTAT
* *
120516725 AATAATCTAT
1 AAT-TTTTAT
120516735 AATTTCTTA-
1 AATTT-TTAT
120516744 AATTTTTAATT
1 AATTTTT-A-T
120516755 ATTATTGTTT-T
1 A--ATT-TTTAT
120516766 AATTATTTAT
1 AATT-TTTAT
* *
120516776 AATTTTCAAG
1 AATTTT-TAT
*
120516786 AACTTTTAT
1 AATTTTTAT
120516795 AATTTTT
1 AATTTTT
120516802 TTTAAAAATT
Statistics
Matches: 107, Mismatches: 21, Indels: 32
0.67 0.13 0.20
Matches are distributed among these distances:
8 4 0.04
9 52 0.49
10 32 0.30
11 13 0.12
13 3 0.03
14 3 0.03
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (9 bp):
AATTTTTAT
Found at i:120516674 original size:19 final size:19
Alignment explanation
Indices: 120516650--120516711 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
120516640 ACTTTCACGA
120516650 ATTTTTATAATTTTTTATG
1 ATTTTTATAATTTTTTATG
120516669 ATTTTTATAATTTTTATAT-
1 ATTTTTATAATTTTT-TATG
**
120516688 ATTTTT-TTTTATTTTTATG
1 ATTTTTATAAT-TTTTTATG
120516707 ATTTT
1 ATTTT
120516712 CTTATCATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
18 5 0.13
19 30 0.79
20 3 0.08
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (19 bp):
ATTTTTATAATTTTTTATG
Found at i:120516721 original size:20 final size:19
Alignment explanation
Indices: 120516651--120516724 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 19
120516641 CTTTCACGAA
120516651 TTTTTATAATTTTTTATGA-
1 TTTTTATAA-TTTTTATGAT
*
120516670 TTTTTATAATTTTTATATAT
1 TTTTTATAATTTTTAT-GAT
* *
120516690 TTTTTTTTATTTTTATGAT
1 TTTTTATAATTTTTATGAT
*
120516709 TTTCTTATCATTTTTA
1 TTT-TTATAATTTTTA
120516725 AATAATCTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
18 7 0.15
19 15 0.33
20 24 0.52
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (19 bp):
TTTTTATAATTTTTATGAT
Found at i:120516722 original size:29 final size:28
Alignment explanation
Indices: 120516651--120516723 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 28
120516641 CTTTCACGAA
120516651 TTTTTATAATTTTTTATGATTTTTATAAT
1 TTTTTAT-ATTTTTTATGATTTTTATAAT
* * *
120516680 TTTTATATATTTTTTTTTATTTTTATGAT
1 TTTT-TATATTTTTTATGATTTTTATAAT
120516709 TTTCTTATCATTTTT
1 TTT-TTAT-ATTTTT
120516724 AAATAATCTA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
29 28 0.74
30 10 0.26
ACGTcount: A:0.22, C:0.03, G:0.03, T:0.73
Consensus pattern (28 bp):
TTTTTATATTTTTTATGATTTTTATAAT
Found at i:120517209 original size:2 final size:2
Alignment explanation
Indices: 120517202--120517230 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
120517192 TAGTTTAAAT
120517202 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
120517231 TACTAACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:120519304 original size:18 final size:19
Alignment explanation
Indices: 120519283--120519325 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
120519273 AGTTAAAAAT
*
120519283 ATTTTTAAT-ACTTTTAAA
1 ATTTTTAATAAATTTTAAA
*
120519301 ATTTTTAATAAATTTTATA
1 ATTTTTAATAAATTTTAAA
120519320 ATTTTT
1 ATTTTT
120519326 TATATTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTTTTAATAAATTTTAAA
Found at i:120519306 original size:19 final size:20
Alignment explanation
Indices: 120519278--120519327 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
120519268 TTAAAAGTTA
*
120519278 AAAATATTTTTAAT-ACTTTT
1 AAAAT-TTTTTAATAAATTTT
120519298 AAAA-TTTTTAATAAATTTT
1 AAAATTTTTTAATAAATTTT
*
120519317 ATAATTTTTTA
1 AAAATTTTTTA
120519328 TATTAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 8 0.31
19 8 0.31
20 10 0.38
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
AAAATTTTTTAATAAATTTT
Found at i:120526270 original size:5 final size:6
Alignment explanation
Indices: 120526253--120526277 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
120526243 CTCATTTTCA
120526253 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
120526278 TTAAGACATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:120526848 original size:19 final size:19
Alignment explanation
Indices: 120526796--120526842 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
120526786 ATCATAAAAA
120526796 TATAAAAATTGTAAATTTT
1 TATAAAAATTGTAAATTTT
120526815 TATAAAAATTGTAAATTTT
1 TATAAAAATTGTAAATTTT
120526834 TATAAAAAT
1 TATAAAAAT
120526843 CATAAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (19 bp):
TATAAAAATTGTAAATTTT
Found at i:120526856 original size:19 final size:19
Alignment explanation
Indices: 120526763--120526873 Score: 64
Period size: 19 Copynumber: 5.8 Consensus size: 19
120526753 AATTTTAATA
* *
120526763 AAAAATTATAAAAAAATAT
1 AAAAATCATAAAAATATAT
*
120526782 CAAAATCAT-AAAA-ATAT
1 AAAAATCATAAAAATATAT
** ** *
120526799 AAAAATTGTAAATTTTTAT
1 AAAAATCATAAAAATATAT
** ** *
120526818 AAAAATTGTAAATTTTTAT
1 AAAAATCATAAAAATATAT
120526837 AAAAATCATAAAAATATAT
1 AAAAATCATAAAAATATAT
120526856 ATAAAATGCATCAAAAAT
1 A-AAAAT-CAT-AAAAAT
120526874 TTCATTTAAC
Statistics
Matches: 74, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
17 10 0.14
18 6 0.08
19 44 0.59
20 5 0.07
21 3 0.04
22 6 0.08
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (19 bp):
AAAAATCATAAAAATATAT
Found at i:120527135 original size:30 final size:28
Alignment explanation
Indices: 120527081--120527190 Score: 105
Period size: 29 Copynumber: 3.8 Consensus size: 28
120527071 TTTACATTTT
* *
120527081 TTATTATTTTCTTAC-AATTTTATAAAA
1 TTATAATTTTTTTACAAATTTTATAAAA
* * *
120527108 TTATAATTTTTTTCCTATATTTCTATAAATT
1 TTATAATTTTTTTAC-AAATTT-TATAAA-A
120527139 TTATAATTTTTTTACAAATTTTATAAAA
1 TTATAATTTTTTTACAAATTTTATAAAA
* * *
120527167 TTTTACATTTTTTTATAATTTTTA
1 TTATA-ATTTTTTTACAAATTTTA
120527191 ATATTTTTAT
Statistics
Matches: 67, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
27 12 0.18
28 4 0.06
29 26 0.39
30 11 0.16
31 14 0.21
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (28 bp):
TTATAATTTTTTTACAAATTTTATAAAA
Found at i:120527146 original size:31 final size:30
Alignment explanation
Indices: 120527079--120527197 Score: 108
Period size: 27 Copynumber: 4.1 Consensus size: 30
120527069 TCTTTACATT
* *
120527079 TTTTATTATTTTCTTAC-AATTTTATAAAA
1 TTTTATAATTTTTTTACAAATTTTATAAAA
* *
120527108 --TTATAATTTTTTTCCTATATTTCTAT-AAA
1 TTTTATAATTTTTTTAC-AAATTT-TATAAAA
120527137 TTTTATAATTTTTTTACAAATTTTATAAAA
1 TTTTATAATTTTTTTACAAATTTTATAAAA
* * *
120527167 TTTTA-CATTTTTTTA-TAATTTT-TAATA
1 TTTTATAATTTTTTTACAAATTTTATAAAA
120527194 TTTT
1 TTTT
120527198 TATATTCTTT
Statistics
Matches: 75, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
27 20 0.27
28 6 0.08
29 19 0.25
30 16 0.21
31 14 0.19
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (30 bp):
TTTTATAATTTTTTTACAAATTTTATAAAA
Found at i:120527163 original size:29 final size:29
Alignment explanation
Indices: 120527079--120527237 Score: 105
Period size: 30 Copynumber: 5.4 Consensus size: 29
120527069 TCTTTACATT
* *
120527079 TTTTATTATTTTCTTAC-AATTTTATAAA
1 TTTTATAATTTTTTTACAAATTTTATAAA
* * *
120527107 -ATTATAATTTTTTTCCTATATTTCTATAAA
1 TTTTATAATTTTTTTAC-AAATTT-TATAAA
120527137 TTTTATAATTTTTTTACAAATTTTATAAAA
1 TTTTATAATTTTTTTACAAATTTTAT-AAA
* *
120527167 TTTTA-CATTTTTTTA-TAATTTT-TAATA
1 TTTTATAATTTTTTTACAAATTTTATAA-A
* * **
120527194 TTTTTATATTCTTTTATTA-AAATTTAATATT
1 -TTTTATAAT-TTTT-TTACAAATTTTATAAA
*
120527225 TTTTATAACTTTT
1 TTTTATAATTTTT
120527238 ATTGATTTTA
Statistics
Matches: 102, Mismatches: 18, Indels: 21
0.72 0.13 0.15
Matches are distributed among these distances:
26 2 0.02
27 14 0.14
28 11 0.11
29 21 0.21
30 30 0.29
31 22 0.22
32 2 0.02
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.62
Consensus pattern (29 bp):
TTTTATAATTTTTTTACAAATTTTATAAA
Found at i:120527180 original size:20 final size:19
Alignment explanation
Indices: 120527157--120527201 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
120527147 TTTTTACAAA
*
120527157 TTTTATAAAATTTTACATTT
1 TTTTATAAAATTTTA-ATAT
*
120527177 TTTTAT-AATTTTTAATAT
1 TTTTATAAAATTTTAATAT
120527195 TTTTATA
1 TTTTATA
120527202 TTCTTTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 9 0.41
19 7 0.32
20 6 0.27
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTATAAAATTTTAATAT
Found at i:120529978 original size:15 final size:15
Alignment explanation
Indices: 120529958--120529986 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
120529948 CATACTTGAT
120529958 GTGATGAGATAAATA
1 GTGATGAGATAAATA
120529973 GTGATGAGATAAAT
1 GTGATGAGATAAAT
120529987 GAACATGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.28, T:0.28
Consensus pattern (15 bp):
GTGATGAGATAAATA
Found at i:120531299 original size:26 final size:26
Alignment explanation
Indices: 120531267--120531323 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
120531257 TTCAACCTTC
120531267 AAATTTCACCATAAACCCTAATTTCA
1 AAATTTCACCATAAACCCTAATTTCA
120531293 AAATTTCACCATAAACCCTAATTTCA
1 AAATTTCACCATAAACCCTAATTTCA
120531319 AAATT
1 AAATT
120531324 CTCTCTATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.32
Consensus pattern (26 bp):
AAATTTCACCATAAACCCTAATTTCA
Found at i:120533590 original size:15 final size:15
Alignment explanation
Indices: 120533570--120533598 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
120533560 AGTAAAAGTT
120533570 AAGTGTGGTTTTAGA
1 AAGTGTGGTTTTAGA
120533585 AAGTGTGGTTTTAG
1 AAGTGTGGTTTTAG
120533599 GAATAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.34, T:0.41
Consensus pattern (15 bp):
AAGTGTGGTTTTAGA
Found at i:120534914 original size:53 final size:49
Alignment explanation
Indices: 120534835--120534995 Score: 150
Period size: 53 Copynumber: 3.3 Consensus size: 49
120534825 GACGGAAAAG
*
120534835 ATGTGATATGT-ACTTCCGTATAAGACCATAGCTGGGCTATGGCATTGGT
1 ATGTGATATGTGA-TTCCGTATAAGACCATAGCTGGGCTATGGCATCGGT
* * * *
120534884 ACAATGTGATAATGTGATTCCGTATAAGACCATATCTGGGATATAGTATCGGT
1 ---ATGTGAT-ATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGT
* * * *
120534937 A--TGATATGTGA-TCCGTATAAGACCATGGCAGGGCTATGGCTTCAGT
1 ATGTGATATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGT
* *
120534983 GTGTGATGTGTGA
1 ATGTGATATGTGA
120534996 CAATGAGAAA
Statistics
Matches: 90, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
46 27 0.30
47 6 0.07
48 13 0.14
50 1 0.01
52 7 0.08
53 35 0.39
54 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (49 bp):
ATGTGATATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGT
Found at i:120538515 original size:15 final size:17
Alignment explanation
Indices: 120538487--120538528 Score: 54
Period size: 15 Copynumber: 2.6 Consensus size: 17
120538477 TTACTTGTAC
120538487 ATATATTATT-ATTA-TT
1 ATATATT-TTAATTATTT
120538503 AT-TATTTTAATTATTT
1 ATATATTTTAATTATTT
120538519 ATATATTTTA
1 ATATATTTTA
120538529 TTCCAAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 2 0.09
15 8 0.35
16 6 0.26
17 7 0.30
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
ATATATTTTAATTATTT
Found at i:120542366 original size:31 final size:30
Alignment explanation
Indices: 120542307--120542364 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
120542297 AAAATTTTCA
* *
120542307 AAATCACTTTTGAAAAATGTATTTTTTTAC
1 AAATCACTTTTGAAAAAAGCATTTTTTTAC
*
120542337 AAATCACTTTTTAAAAAAGCATTTTTTT
1 AAATCACTTTTGAAAAAAGCATTTTTTT
120542365 TAACAATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.38, C:0.10, G:0.05, T:0.47
Consensus pattern (30 bp):
AAATCACTTTTGAAAAAAGCATTTTTTTAC
Found at i:120544703 original size:23 final size:24
Alignment explanation
Indices: 120544664--120544713 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
120544654 CTATTATTAT
*
120544664 AATAATATAAAAATAAAGAGATCA
1 AATAATATAAAAATAAAAAGATCA
* *
120544688 AATAA-ATTAAAATAAAAAGATTA
1 AATAATATAAAAATAAAAAGATCA
120544711 AAT
1 AAT
120544714 TCTAAATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.24
Consensus pattern (24 bp):
AATAATATAAAAATAAAAAGATCA
Found at i:120545759 original size:6 final size:6
Alignment explanation
Indices: 120545738--120545772 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
120545728 AAATCAATAT
120545738 AAAGAGA AAA-AA AAAGAA AAAGAA AAAGAA AAAGA
1 AAAGA-A AAAGAA AAAGAA AAAGAA AAAGAA AAAGA
120545773 TATAGTGACA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 4 0.15
6 20 0.74
7 3 0.11
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:120557914 original size:26 final size:26
Alignment explanation
Indices: 120557884--120557939 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
120557874 TGAAATTCCC
*
120557884 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
120557910 ATCATGAAACATTTACCTAACCTATT
1 ATCATGAAACATTTACCTAACCCATT
120557936 ATCA
1 ATCA
120557940 ATTTGTATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.32
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:120561972 original size:18 final size:18
Alignment explanation
Indices: 120561949--120562053 Score: 57
Period size: 18 Copynumber: 5.5 Consensus size: 18
120561939 CAGCTCTGAT
120561949 GAGCTTCAGTTAGCCTTC
1 GAGCTTCAGTTAGCCTTC
* *
120561967 GAGCTTCCGTTTAGCACTTAT
1 GAGCTTCAG-TTAGC-CTT-C
* *
120561988 GTGGTTCAGTTAGCCTTC
1 GAGCTTCAGTTAGCCTTC
* * *
120562006 GGGCTTCCGTTTAGCACTTAT
1 GAGCTTCAG-TTAGC-CTT-C
* * *
120562027 GTGCTTCAGCTAGACTTC
1 GAGCTTCAGTTAGCCTTC
*
120562045 GGGCTTCAG
1 GAGCTTCAG
120562054 ATCATGATGT
Statistics
Matches: 65, Mismatches: 16, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
18 22 0.34
19 16 0.25
20 14 0.22
21 13 0.20
ACGTcount: A:0.15, C:0.25, G:0.25, T:0.35
Consensus pattern (18 bp):
GAGCTTCAGTTAGCCTTC
Found at i:120561999 original size:39 final size:39
Alignment explanation
Indices: 120561951--120562051 Score: 166
Period size: 39 Copynumber: 2.6 Consensus size: 39
120561941 GCTCTGATGA
*
120561951 GCTTCAGTTAGCCTTCGAGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
120561990 GGTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* *
120562029 GCTTCAGCTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
120562052 AGATCATGAT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.14, C:0.26, G:0.24, T:0.37
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:120562770 original size:28 final size:26
Alignment explanation
Indices: 120562721--120562778 Score: 64
Period size: 28 Copynumber: 2.2 Consensus size: 26
120562711 GAAAAATTAT
*
120562721 AAAATAATAATAAATAATATTAATTAGA
1 AAAATAATAATAAATAAAATTAA--AGA
*
120562749 AAAATAA-CATAAACTAAAATTAAAGA
1 AAAATAATAATAAA-TAAAATTAAAGA
120562775 AAAA
1 AAAA
120562779 ATGAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 7 0.26
27 5 0.19
28 15 0.56
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.24
Consensus pattern (26 bp):
AAAATAATAATAAATAAAATTAAAGA
Found at i:120564837 original size:185 final size:185
Alignment explanation
Indices: 120564501--120564874 Score: 590
Period size: 185 Copynumber: 2.0 Consensus size: 185
120564491 ATAAACGCGC
*
120564501 TTTATCTCACATCCTCTTACATTGGTAACAAAATCTATAGTACATCTAATACTTATATTTAAGCA
1 TTTAGCTCACATCCTCTTACATTGGTAACAAAATCTATAGTACATCTAATACTTATATTTAAGCA
* * **
120564566 CTTTATTGAGTTGGTGTCACCTTTAAGTCGGTCACCAACTCAATTATGAAATTACGGATATACCC
66 CTTTATTGAGTTGGTGTCACCTTTAACTCGGTCACCAACTCAATTATGAAATCAAAGATATACCC
120564631 ATTCTTTTAGATTACAATTAATACTATTATGATAACACTTTTGTCTTTTCGTACT
131 ATTCTTTTAGATTACAATTAATACTATTATGATAACACTTTTGTCTTTTCGTACT
*
120564686 TTTAGCTCACATCCTCTTGCATTGG-AAGCAAAATCTATAGTACATCTAATACTTATATTTAAGC
1 TTTAGCTCACATCCTCTTACATTGGTAA-CAAAATCTATAGTACATCTAATACTTATATTTAAGC
* * * * *
120564750 ATTTTATTGAGTTGTTGTCACTTTTAACTCGGTCACCAACTCAGTTATGAAATCAAAGATATATC
65 ACTTTATTGAGTTGGTGTCACCTTTAACTCGGTCACCAACTCAATTATGAAATCAAAGATATACC
* * *
120564815 TATT-TTTTAAGATTATAATTAATACTATTATGATAGCACTTTTGTCTTTTCGTACT
130 CATTCTTTT-AGATTACAATTAATACTATTATGATAACACTTTTGTCTTTTCGTACT
120564871 TTTA
1 TTTA
120564875 TATCATCTTT
Statistics
Matches: 173, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
184 6 0.03
185 167 0.97
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (185 bp):
TTTAGCTCACATCCTCTTACATTGGTAACAAAATCTATAGTACATCTAATACTTATATTTAAGCA
CTTTATTGAGTTGGTGTCACCTTTAACTCGGTCACCAACTCAATTATGAAATCAAAGATATACCC
ATTCTTTTAGATTACAATTAATACTATTATGATAACACTTTTGTCTTTTCGTACT
Found at i:120571597 original size:35 final size:34
Alignment explanation
Indices: 120571551--120571624 Score: 87
Period size: 35 Copynumber: 2.1 Consensus size: 34
120571541 ATTGAATTTT
* *
120571551 TTATTTACATTTGAATAATTGT-AAGAAATAATAA
1 TTATTTACATTTGAATAATTATAAAAAAAT-ATAA
**
120571585 TTATTTGACATTTTCATAATTATAAAAAAATATAA
1 TTATTT-ACATTTGAATAATTATAAAAAAATATAA
120571620 TTATT
1 TTATT
120571625 GAAGCATGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
34 6 0.18
35 22 0.65
36 6 0.18
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.45
Consensus pattern (34 bp):
TTATTTACATTTGAATAATTATAAAAAAATATAA
Found at i:120573803 original size:2 final size:2
Alignment explanation
Indices: 120573796--120573830 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
120573786 TAATTTACGC
120573796 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
120573831 TTTTGTTTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:120573968 original size:12 final size:12
Alignment explanation
Indices: 120573944--120573975 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
120573934 GCTTATTTGA
120573944 ATAAAATAAATTC
1 ATAAAA-AAATTC
120573957 ATAAAAAAATTC
1 ATAAAAAAATTC
120573969 ATAAAAA
1 ATAAAAA
120573976 TGATAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (12 bp):
ATAAAAAAATTC
Found at i:120577070 original size:38 final size:38
Alignment explanation
Indices: 120577041--120577171 Score: 154
Period size: 38 Copynumber: 3.4 Consensus size: 38
120577031 CCTGCAATGT
** *
120577041 ACAAAGCCTAAATAACACCGACACAAAGCCTGCTAGGT
1 ACAAAGCCCGAATAACACCGACACAAAGCCTGCTAGGC
* * * * *
120577079 GCAGAGCCCGAATAATACTGTCACAAAGCCTGCTAGGC
1 ACAAAGCCCGAATAACACCGACACAAAGCCTGCTAGGC
* * *
120577117 ACAGAGCCCGAATAACACCTACACGAAGCCTGCTAGGC
1 ACAAAGCCCGAATAACACCGACACAAAGCCTGCTAGGC
*
120577155 ACAAAGCCTGAATAACA
1 ACAAAGCCCGAATAACA
120577172 TTATGTTTCT
Statistics
Matches: 77, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 77 1.00
ACGTcount: A:0.38, C:0.30, G:0.19, T:0.13
Consensus pattern (38 bp):
ACAAAGCCCGAATAACACCGACACAAAGCCTGCTAGGC
Found at i:120582264 original size:16 final size:16
Alignment explanation
Indices: 120582243--120582273 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
120582233 CTATGCATGT
*
120582243 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
120582259 AAAATACAAAAGACA
1 AAAATACAAAAGACA
120582274 CAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:120583572 original size:22 final size:23
Alignment explanation
Indices: 120583516--120583558 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
120583506 GCAATCTTAG
*
120583516 ATATGA-TATGTAATCATAGAAT
1 ATATGATTCTGTAATCATAGAAT
*
120583538 ATATGATTCTGTAATCTTAGA
1 ATATGATTCTGTAATCATAGA
120583559 GATTTGATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.40
Consensus pattern (23 bp):
ATATGATTCTGTAATCATAGAAT
Found at i:120584342 original size:29 final size:31
Alignment explanation
Indices: 120584280--120584350 Score: 85
Period size: 29 Copynumber: 2.3 Consensus size: 31
120584270 AAATTTATAT
*
120584280 ATGAACTTTGATCTGATGTGCAATTTGACGC
1 ATGAACTTTGATCTGATGTGCAATTTGACAC
*
120584311 ATGAACTTTGAT-TTA-GTGCAATTAT-ACAC
1 ATGAACTTTGATCTGATGTGCAATT-TGACAC
120584340 ATGGAACTTTG
1 AT-GAACTTTG
120584351 GGTGTGGTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
29 13 0.36
30 11 0.31
31 12 0.33
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.37
Consensus pattern (31 bp):
ATGAACTTTGATCTGATGTGCAATTTGACAC
Found at i:120588739 original size:14 final size:14
Alignment explanation
Indices: 120588714--120588746 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
120588704 ATGATTTAAT
120588714 TAAATAATTGAATAA
1 TAAATAATTGAAT-A
120588729 TAAAT-ATTGAATA
1 TAAATAATTGAATA
120588742 TAAAT
1 TAAAT
120588747 GGTAAAGCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.33
14 7 0.39
15 5 0.28
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (14 bp):
TAAATAATTGAATA
Found at i:120592245 original size:3 final size:3
Alignment explanation
Indices: 120592237--120592283 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
120592227 ATGTAAAAGA
120592237 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
120592284 CAATTGCTAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:120603459 original size:17 final size:17
Alignment explanation
Indices: 120603437--120603472 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
120603427 ATGGTGTGTG
120603437 AAAAATAAAATAAAATA
1 AAAAATAAAATAAAATA
*
120603454 AAAAATAAAATTAAATA
1 AAAAATAAAATAAAATA
120603471 AA
1 AA
120603473 GAACACACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (17 bp):
AAAAATAAAATAAAATA
Found at i:120609372 original size:15 final size:14
Alignment explanation
Indices: 120609352--120609392 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
120609342 TTTTATGAGC
120609352 ACAAAAAAGAATAGA
1 ACAAAAAAGAA-AGA
*
120609367 ACAAAAAATAAAGA
1 ACAAAAAAGAAAGA
120609381 ACAAAAAA-AAAG
1 ACAAAAAAGAAAG
120609393 GGTAAATGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 4 0.16
14 11 0.44
15 10 0.40
ACGTcount: A:0.78, C:0.07, G:0.10, T:0.05
Consensus pattern (14 bp):
ACAAAAAAGAAAGA
Found at i:120611083 original size:25 final size:27
Alignment explanation
Indices: 120611037--120611087 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 27
120611027 TTATATTAAT
*
120611037 TTTTTTGTTTTTTTAAATAAAATATTA
1 TTTTTTGTATTTTTAAATAAAATATTA
*
120611064 TTTTTT-TATTTTTATA-AAAATATT
1 TTTTTTGTATTTTTAAATAAAATATT
120611088 TAAATATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 8 0.36
26 8 0.36
27 6 0.27
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (27 bp):
TTTTTTGTATTTTTAAATAAAATATTA
Found at i:120611626 original size:60 final size:61
Alignment explanation
Indices: 120611533--120611666 Score: 182
Period size: 60 Copynumber: 2.2 Consensus size: 61
120611523 GAATGTAATT
* * *
120611533 TTTTTTGTTTTTTATAATTATTTTAAAAATAATTTGTTAGTAATCTAGGATTATGTTA-AAA
1 TTTTTTG-TGTTTATAATTATTTTAAAAATAATTTATTAGTAATCTAGGATTAAGTTATAAA
* * *
120611594 TTTTTTGTGTTTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAA
1 TTTTTTGTGTTTATAATTATTTTAAAAATAATTTATTAGTAATCTAGGATTAAGTTATAAA
*
120611655 -TTGTTGTGTTTA
1 TTTTTTGTGTTTA
120611667 GTTTAGTATT
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
60 54 0.84
61 10 0.16
ACGTcount: A:0.32, C:0.01, G:0.12, T:0.55
Consensus pattern (61 bp):
TTTTTTGTGTTTATAATTATTTTAAAAATAATTTATTAGTAATCTAGGATTAAGTTATAAA
Found at i:120612844 original size:219 final size:208
Alignment explanation
Indices: 120612457--120612938 Score: 714
Period size: 219 Copynumber: 2.3 Consensus size: 208
120612447 GTTTTTAAAA
* * * *
120612457 AATATTTTAATTTAATTTTAATAATGCATATTTTATCCGGATGAAGTATGTATTAGCAGATTCAG
1 AATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTATGCATTAGCAAATTCAC
*
120612522 TAATATGATTATATATATATTTACGCATGTATCACATTACAAAAACAAAATTTTAAATACTTATA
66 TAATATGATTATATATATATTTAAGCATGTATCACATTACAAAAACAAAATTTTAAATACTTATA
* *
120612587 CGTAATAAAACATGTATCTCATTACAATAATTGTTA-TTTCTCAAATAACATATTACTTTATAAT
131 CCTAATAAAACATGTATCTCATTACAATAATAGTTATTTTC-CAAATAACATATTACTTTATAAT
120612651 TTTATTTCTTATTT
195 TTTATTTCTTATTT
* * *
120612665 AATATTTTAATTTAATTTTAATAATGTAAACTTTATCCGGATGAAGTACGCATTAGCAAATTCAC
1 AATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTATGCATTAGCAAATTCAC
*
120612730 TAATATGATTATATATATATATATATATATATTAAGCATGTATCACATTACAAAAACAAATTTTT
66 TAATATG---------AT-TATATATATAT-TTAAGCATGTATCACATTACAAAAACAAAATTTT
*
120612795 AGATACTTATACCTAATAAAACATGTATCTCATTACAATAATAGTTATTTTCCAAATAACATATT
120 AAATACTTATACCTAATAAAACATGTATCTCATTACAATAATAGTTATTTTCCAAATAACATATT
**
120612860 GTTTTATAATTTTATTTCTTATTT
185 ACTTTATAATTTTATTTCTTATTT
*
120612884 AATATTTTAATTTAATTTTAATAATGCATACTTTATCTGGATGAAGTATGCATTA
1 AATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTATGCATTA
120612939 TTAAAATTAA
Statistics
Matches: 244, Mismatches: 18, Indels: 13
0.89 0.07 0.05
Matches are distributed among these distances:
208 65 0.27
217 2 0.01
218 11 0.05
219 162 0.66
220 4 0.02
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.43
Consensus pattern (208 bp):
AATATTTTAATTTAATTTTAATAATGCATACTTTATCCGGATGAAGTATGCATTAGCAAATTCAC
TAATATGATTATATATATATTTAAGCATGTATCACATTACAAAAACAAAATTTTAAATACTTATA
CCTAATAAAACATGTATCTCATTACAATAATAGTTATTTTCCAAATAACATATTACTTTATAATT
TTATTTCTTATTT
Found at i:120615216 original size:33 final size:33
Alignment explanation
Indices: 120615179--120615263 Score: 107
Period size: 33 Copynumber: 2.6 Consensus size: 33
120615169 ATCCACCTTA
* * *
120615179 GTACTCCGCTCCTTCCGGCCCGTATCCACCGCC
1 GTACTCCACTCCTCCCGGCCCGTATCAACCGCC
* * *
120615212 GTACTCTACTCCTCCCGGTCCGTATCAATCGCC
1 GTACTCCACTCCTCCCGGCCCGTATCAACCGCC
*
120615245 GTACTCCATTCCTCCCGGC
1 GTACTCCACTCCTCCCGGC
120615264 TCAAGTTCAT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.12, C:0.47, G:0.16, T:0.25
Consensus pattern (33 bp):
GTACTCCACTCCTCCCGGCCCGTATCAACCGCC
Found at i:120622413 original size:22 final size:20
Alignment explanation
Indices: 120622369--120622414 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 20
120622359 CTCTTCCTTG
*
120622369 TTTTCTTCTCCTTTCTT-TT
1 TTTTCTTCTCCTATCTTCTT
120622388 TTTTCTTCTCCCTATCTTCTT
1 TTTTCTTCT-CCTATCTTCTT
120622409 ATTTTC
1 -TTTTC
120622415 GTTCAACTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 9 0.39
20 7 0.30
21 2 0.09
22 5 0.22
ACGTcount: A:0.04, C:0.28, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTCTTCTCCTATCTTCTT
Found at i:120633782 original size:22 final size:21
Alignment explanation
Indices: 120633747--120633804 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
120633737 GAAAACTTTT
120633747 TTTTTTACTT-TTTTGCT-ACTA
1 TTTTTTA-TTATTTT-CTCACTA
120633768 CTTTTTTATTATTTTCTCACTA
1 -TTTTTTATTATTTTCTCACTA
*
120633790 TTTTATTATCATTTT
1 TTTT-TTATTATTTT
120633805 ACTATTATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.17, C:0.14, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTTTTATTATTTTCTCACTA
Found at i:120633891 original size:22 final size:22
Alignment explanation
Indices: 120633850--120633891 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
120633840 TAATATATAA
* *
120633850 TTATTATTTTATATTAATTTTG
1 TTATTATTTTAGAGTAATTTTG
*
120633872 TTATTATTTTAGAGTCATTT
1 TTATTATTTTAGAGTAATTT
120633892 GCTTGTTAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.26, C:0.02, G:0.07, T:0.64
Consensus pattern (22 bp):
TTATTATTTTAGAGTAATTTTG
Found at i:120634650 original size:2 final size:2
Alignment explanation
Indices: 120634633--120634668 Score: 54
Period size: 2 Copynumber: 17.0 Consensus size: 2
120634623 AAAATTAATC
120634633 AT AT CAT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT
120634669 TACAAAATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 28 0.88
3 4 0.12
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:120635413 original size:19 final size:19
Alignment explanation
Indices: 120635389--120635429 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
120635379 ATTCTGAGTA
120635389 ATTATATTAAATATAAGTT
1 ATTATATTAAATATAAGTT
120635408 ATTATATTAAATATAAGTT
1 ATTATATTAAATATAAGTT
120635427 ATT
1 ATT
120635430 TTTTACTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (19 bp):
ATTATATTAAATATAAGTT
Found at i:120635809 original size:20 final size:19
Alignment explanation
Indices: 120635784--120635826 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
120635774 TTTAAATTTA
*
120635784 TTATTTTTTTCCATTAAATT
1 TTATTTTTTT-AATTAAATT
120635804 TTATTTTTTTAATTAAATT
1 TTATTTTTTTAATTAAATT
120635823 TTAT
1 TTAT
120635827 CACTCAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATTTTTTTAATTAAATT
Found at i:120637342 original size:25 final size:25
Alignment explanation
Indices: 120637301--120637428 Score: 114
Period size: 25 Copynumber: 5.1 Consensus size: 25
120637291 TTTTGAGTTC
* * *
120637301 AAATTCGCCAC-ACAGGCTATCTCGA
1 AAATTAGCCACTA-AGGCTTTCTAGA
*
120637326 AAATTAGCCACTAAGGCTTTTTAGA
1 AAATTAGCCACTAAGGCTTTCTAGA
* * * *
120637351 AAATTTGCCATTAAGACTTTTTAGA
1 AAATTAGCCACTAAGGCTTTCTAGA
* * *
120637376 AGATTAGCCACTAAGGTTTTCCAGA
1 AAATTAGCCACTAAGGCTTTCTAGA
* * *
120637401 AAACTAGCGACTAAGGCTTTTTAGA
1 AAATTAGCCACTAAGGCTTTCTAGA
120637426 AAA
1 AAA
120637429 CTTACAGATT
Statistics
Matches: 82, Mismatches: 20, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
25 81 0.99
26 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (25 bp):
AAATTAGCCACTAAGGCTTTCTAGA
Found at i:120637430 original size:25 final size:25
Alignment explanation
Indices: 120637324--120637428 Score: 131
Period size: 25 Copynumber: 4.2 Consensus size: 25
120637314 AGGCTATCTC
120637324 GAAAATTAGCCACTAAGGCTTTTTA
1 GAAAATTAGCCACTAAGGCTTTTTA
* * *
120637349 GAAAATTTGCCATTAAGACTTTTTA
1 GAAAATTAGCCACTAAGGCTTTTTA
* *
120637374 GAAGATTAGCCACTAAGG-TTTTCCA
1 GAAAATTAGCCACTAAGGCTTTT-TA
* *
120637399 GAAAACTAGCGACTAAGGCTTTTTA
1 GAAAATTAGCCACTAAGGCTTTTTA
120637424 GAAAA
1 GAAAA
120637429 CTTACAGATT
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
24 4 0.06
25 58 0.88
26 4 0.06
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.30
Consensus pattern (25 bp):
GAAAATTAGCCACTAAGGCTTTTTA
Found at i:120637930 original size:23 final size:23
Alignment explanation
Indices: 120637900--120637948 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
120637890 AGGGACCTTG
120637900 CTTATACTCATTCTAGGCCCATA
1 CTTATACTCATTCTAGGCCCATA
* *
120637923 CTTATACTTATTCTAGGCTCATA
1 CTTATACTCATTCTAGGCCCATA
120637946 CTT
1 CTT
120637949 TTCCAAAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.08, T:0.41
Consensus pattern (23 bp):
CTTATACTCATTCTAGGCCCATA
Found at i:120639668 original size:22 final size:19
Alignment explanation
Indices: 120639622--120639665 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 19
120639612 TAAAATTAAT
*
120639622 AATTAATAATAAAGCTCAA
1 AATTAATAATAAAACTCAA
120639641 AATTAATAATAAAACACTCAA
1 AATTAATAAT-AAA-ACTCAA
120639662 AATT
1 AATT
120639666 TAAAAAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 10 0.45
20 3 0.14
21 9 0.41
ACGTcount: A:0.59, C:0.11, G:0.02, T:0.27
Consensus pattern (19 bp):
AATTAATAATAAAACTCAA
Found at i:120642692 original size:24 final size:24
Alignment explanation
Indices: 120642665--120642717 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
120642655 TTGTGACAAT
120642665 TACATAATAATCCAAGAAACATAC
1 TACATAATAATCCAAGAAACATAC
120642689 TACATAATAATCCAAGAAACATAC
1 TACATAATAATCCAAGAAACATAC
120642713 T-CATA
1 TACATA
120642718 GCGGGTCAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 4 0.14
24 25 0.86
ACGTcount: A:0.53, C:0.21, G:0.04, T:0.23
Consensus pattern (24 bp):
TACATAATAATCCAAGAAACATAC
Found at i:120653834 original size:4 final size:4
Alignment explanation
Indices: 120653816--120653856 Score: 64
Period size: 4 Copynumber: 10.2 Consensus size: 4
120653806 TTTCCTTCTT
* *
120653816 TATG TACG TACG TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG T
120653857 GTTACTGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.24, C:0.05, G:0.24, T:0.46
Consensus pattern (4 bp):
TATG
Found at i:120658475 original size:40 final size:40
Alignment explanation
Indices: 120658430--120658597 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
120658420 CGGAATATAA
120658430 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
120658470 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
120658510 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
120658550 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
120658590 CCGGATAT
1 CCGGATAT
120658598 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:120666022 original size:16 final size:16
Alignment explanation
Indices: 120665997--120666035 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
120665987 AACAAACAAG
*
120665997 GTGGAGGCTTGATAGT
1 GTGGATGCTTGATAGT
120666013 GTGGATGCTTGATAGT
1 GTGGATGCTTGATAGT
120666029 GTGGATG
1 GTGGATG
120666036 ACTTCGACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.18, C:0.05, G:0.44, T:0.33
Consensus pattern (16 bp):
GTGGATGCTTGATAGT
Found at i:120666464 original size:40 final size:40
Alignment explanation
Indices: 120666419--120666586 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
120666409 CGGAATATAA
120666419 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
120666459 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
120666499 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
120666539 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
120666579 CCGGATAT
1 CCGGATAT
120666587 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:120669518 original size:25 final size:26
Alignment explanation
Indices: 120669469--120669523 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
120669459 AATGATGACG
120669469 AAAACAATAATAATAGCAATAATA-T
1 AAAACAATAATAATAGCAATAATATT
* *
120669494 AAAACGATAATAATA-CATATGATATT
1 AAAACAATAATAATAGCA-ATAATATT
120669520 AAAA
1 AAAA
120669524 TATATACATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 2 0.08
25 19 0.73
26 5 0.19
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.25
Consensus pattern (26 bp):
AAAACAATAATAATAGCAATAATATT
Found at i:120669733 original size:2 final size:2
Alignment explanation
Indices: 120669726--120669752 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
120669716 TATGGAGTAT
120669726 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
120669753 TTATTAAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:120671615 original size:30 final size:30
Alignment explanation
Indices: 120671542--120671628 Score: 95
Period size: 30 Copynumber: 2.9 Consensus size: 30
120671532 CTAGGTGAAT
* *
120671542 AAGTTGCTTACACAAGCTAGCATTATATTA
1 AAGTTGCTTACACAAGCTAACATTATATCA
** * *
120671572 GGGTTGCTCACACAAGCTAACATTTTATCA
1 AAGTTGCTTACACAAGCTAACATTATATCA
* *
120671602 AAGTTTCTTACACAAGCTGAC-TTATAT
1 AAGTTGCTTACACAAGCTAACATTATAT
120671629 TAGGTTACTT
Statistics
Matches: 45, Mismatches: 12, Indels: 1
0.78 0.21 0.02
Matches are distributed among these distances:
29 5 0.11
30 40 0.89
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (30 bp):
AAGTTGCTTACACAAGCTAACATTATATCA
Found at i:120678867 original size:17 final size:17
Alignment explanation
Indices: 120678841--120678887 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
120678831 ATAATGTAAC
*
120678841 AATATGAAATTGAA-GA
1 AATATCAAATTGAATGA
120678857 AATGATCAAATTGAATGA
1 AAT-ATCAAATTGAATGA
*
120678875 AATATCAGATTGA
1 AATATCAAATTGA
120678888 GTACTTCTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 3 0.11
17 19 0.70
18 5 0.19
ACGTcount: A:0.51, C:0.04, G:0.17, T:0.28
Consensus pattern (17 bp):
AATATCAAATTGAATGA
Found at i:120679030 original size:54 final size:52
Alignment explanation
Indices: 120678951--120679156 Score: 198
Period size: 53 Copynumber: 3.9 Consensus size: 52
120678941 CCATGGCAAC
* *
120678951 AAGTGATAAGCGATATTCGTATAAGACCATAGCTAGGCTATGGCATCGGAAAA
1 AAGTGATAAGCGAT-TCCGTATAAGACCATAGCTAGGCTATGGCATCAGAAAA
* * * * **
120679004 CAAGTGATAAGTGATTCCCGTATAAGACCATAACTAGGTTATGGCTTCAGATTA
1 -AAGTGATAAGCGATT-CCGTATAAGACCATAGCTAGGCTATGGCATCAGAAAA
* *
120679058 AAGTGATACAAGCGA-TCCATATAAGACCATAGCTAGGCTATGGCATCAGAGAA
1 AAGTGAT--AAGCGATTCCGTATAAGACCATAGCTAGGCTATGGCATCAGAAAA
* * * * * * * *
120679111 AAGTGATAAGTGTTTCTGTGTAAGATCATATCCAGGATATGGCATC
1 AAGTGATAAGCGATTCCGTATAAGACCATAGCTAGGCTATGGCATC
120679157 GGTATGATAT
Statistics
Matches: 124, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
51 4 0.03
52 25 0.20
53 46 0.37
54 44 0.35
55 5 0.04
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (52 bp):
AAGTGATAAGCGATTCCGTATAAGACCATAGCTAGGCTATGGCATCAGAAAA
Found at i:120680000 original size:20 final size:20
Alignment explanation
Indices: 120679975--120680032 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
120679965 AGATAGGGGC
*
120679975 ACATGCCCGTGTGGCCTGGG
1 ACATGCCCGTGTGGCCTGGA
120679995 ACATGCCCGTGTGGCCTGGA
1 ACATGCCCGTGTGGCCTGGA
120680015 ACATGCCCGTGTGGCCTG
1 ACATGCCCGTGTGGCCTG
120680033 CCCATGGGCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.12, C:0.31, G:0.36, T:0.21
Consensus pattern (20 bp):
ACATGCCCGTGTGGCCTGGA
Found at i:120680532 original size:13 final size:13
Alignment explanation
Indices: 120680514--120680550 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
120680504 AGATAATTAG
120680514 CAAATCATACATA
1 CAAATCATACATA
120680527 CAAATCATACATA
1 CAAATCATACATA
*
120680540 TAAATTCATAC
1 CAAA-TCATAC
120680551 CAAACTATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (13 bp):
CAAATCATACATA
Found at i:120682003 original size:21 final size:21
Alignment explanation
Indices: 120681978--120682019 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
120681968 TTTCTTGTTT
* *
120681978 TTCTTTCTTTTATTTTATTTA
1 TTCTTTATTTCATTTTATTTA
120681999 TTCTTTATTTCATTTTATTTA
1 TTCTTTATTTCATTTTATTTA
120682020 CTTAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.74
Consensus pattern (21 bp):
TTCTTTATTTCATTTTATTTA
Found at i:120682157 original size:3 final size:3
Alignment explanation
Indices: 120682136--120682205 Score: 117
Period size: 3 Copynumber: 23.7 Consensus size: 3
120682126 CTATCTCAAT
120682136 TAA TAGA TAA -AA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
120682180 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
120682206 GTAAGTAAAT
Statistics
Matches: 64, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
2 4 0.06
3 57 0.89
4 3 0.05
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:120685581 original size:5 final size:5
Alignment explanation
Indices: 120685573--120685615 Score: 61
Period size: 5 Copynumber: 8.4 Consensus size: 5
120685563 TTAATAAACG
120685573 AAAAT AAAAT AAAAT AAAAT AAAAGT -AAAT AAAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT AAAAT AA
120685616 TATCTTCCTA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 1 0.03
5 29 0.83
6 5 0.14
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:120685585 original size:15 final size:15
Alignment explanation
Indices: 120685573--120685615 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
120685563 TTAATAAACG
*
120685573 AAAATAAAATAAAAT
1 AAAATAAAATAAAAA
*
120685588 AAAATAAAAGTAAATA
1 AAAATAAAA-TAAAAA
120685604 AAAATAAAATAA
1 AAAATAAAATAA
120685616 TATCTTCCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (15 bp):
AAAATAAAATAAAAA
Done.