Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 387 of 433
Found at i:120686075 original size:18 final size:18
Alignment explanation
Indices: 120686052--120686103 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
120686042 AAAATGTGAG
* *
120686052 AAATGATATTCACATTTT
1 AAATGATGTTCACATTTC
*
120686070 AAATGATGTTCAGATTTC
1 AAATGATGTTCACATTTC
120686088 AAATGATGTTCACATT
1 AAATGATGTTCACATT
120686104 GATAGAAACG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:120686709 original size:73 final size:72
Alignment explanation
Indices: 120686520--120686776 Score: 322
Period size: 72 Copynumber: 3.6 Consensus size: 72
120686510 CTAAATAACA
* * * *
120686520 ATGC-TAAACTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATATTTTA
1 ATGCTTAAACTAGTTTTATCAATAGTTGTTTATGTTTGATTTTTGGATATTGAATTTATGTTCTA
120686584 CTTATTT
66 CTTATTT
* * * *
120686591 ATG-TGTAATCTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGGTCT
1 ATGCT-TAAACTAGTTTTATCAATAGTTGTTTATGTTTGATTTTTGGATATTGAATTTATGTTCT
*
120686655 AATTATTT
65 ACTTATTT
** * *
120686663 ATGCTTAGGGCTAGTTTTATCAATAATTGTTTATGTTTGATTTTTGGATATTAAATTTATGTTCT
1 ATGCTTA-AACTAGTTTTATCAATAGTTGTTTATGTTTGATTTTTGGATATTGAATTTATGTTCT
120686728 ACTTATTT
65 ACTTATTT
* * * *
120686736 ATAC-TAAATTAGTTTTATCAATAGTTGTTTATATATGATTT
1 ATGCTTAAACTAGTTTTATCAATAGTTGTTTATGTTTGATTT
120686777 CGGATTTAAA
Statistics
Matches: 160, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
71 32 0.20
72 67 0.42
73 61 0.38
ACGTcount: A:0.26, C:0.06, G:0.14, T:0.53
Consensus pattern (72 bp):
ATGCTTAAACTAGTTTTATCAATAGTTGTTTATGTTTGATTTTTGGATATTGAATTTATGTTCTA
CTTATTT
Found at i:120690565 original size:18 final size:18
Alignment explanation
Indices: 120690302--120690566 Score: 250
Period size: 18 Copynumber: 14.8 Consensus size: 18
120690292 TGGTGGTGGT
* *
120690302 GGTTCTTTTGG-TTTCTCA
1 GGTTCTTTAGGCTTT-TCG
*
120690320 GGTTCCTTAGGCTTTTCG
1 GGTTCTTTAGGCTTTTCG
*
120690338 GGTTCTTTCGGCTTTTCG
1 GGTTCTTTAGGCTTTTCG
* *
120690356 GGTTGTTTCGG-TTTCTCG
1 GGTTCTTTAGGCTTT-TCG
* *
120690374 GGTTCTTTGGGTTTTTCG
1 GGTTCTTTAGGCTTTTCG
*
120690392 GGTTCTTTCGGCTTTTCG
1 GGTTCTTTAGGCTTTTCG
*
120690410 GGTTGTTTAGG-TTTCTCG
1 GGTTCTTTAGGCTTT-TCG
*
120690428 GGTTCTTT-GGGTTTTCG
1 GGTTCTTTAGGCTTTTCG
* * *
120690445 GGTTCTTTTGGTTTTTCT
1 GGTTCTTTAGGCTTTTCG
*
120690463 GGTGCTTTAGGCTTTTCG
1 GGTTCTTTAGGCTTTTCG
* * *
120690481 GGTTCTTTTGGTTTTTCT
1 GGTTCTTTAGGCTTTTCG
* * *
120690499 GGTACTTTAGGCTTCTCA
1 GGTTCTTTAGGCTTTTCG
* * *
120690517 GGTTCTTTGGGTTTTTCA
1 GGTTCTTTAGGCTTTTCG
*
120690535 GGTTCTTTGGGCTTTTCG
1 GGTTCTTTAGGCTTTTCG
120690553 GGTTCTTTAGGCTT
1 GGTTCTTTAGGCTT
120690567 CTCAGGCTCC
Statistics
Matches: 206, Mismatches: 35, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
17 19 0.09
18 181 0.88
19 6 0.03
ACGTcount: A:0.03, C:0.16, G:0.29, T:0.52
Consensus pattern (18 bp):
GGTTCTTTAGGCTTTTCG
Found at i:120690581 original size:36 final size:36
Alignment explanation
Indices: 120690302--120690560 Score: 288
Period size: 36 Copynumber: 7.2 Consensus size: 36
120690292 TGGTGGTGGT
* *
120690302 GGTTCTTTTGGTTTCTCAGGTTCCTTAGGCTTTTCG
1 GGTTCTTTTGGTTTTTCAGGTTCTTTAGGCTTTTCG
* * * * *
120690338 GGTTCTTTCGGCTTTTCGGGTTGTTTCGG-TTTCTCG
1 GGTTCTTTTGGTTTTTCAGGTTCTTTAGGCTTT-TCG
* * *
120690374 GGTTCTTTGGGTTTTTCGGGTTCTTTCGGCTTTTCG
1 GGTTCTTTTGGTTTTTCAGGTTCTTTAGGCTTTTCG
* * * * *
120690410 GGTTGTTTAGGTTTCTCGGGTTCTTT-GGGTTTTCG
1 GGTTCTTTTGGTTTTTCAGGTTCTTTAGGCTTTTCG
* *
120690445 GGTTCTTTTGGTTTTTCTGGTGCTTTAGGCTTTTCG
1 GGTTCTTTTGGTTTTTCAGGTTCTTTAGGCTTTTCG
* * * *
120690481 GGTTCTTTTGGTTTTTCTGGTACTTTAGGCTTCTCA
1 GGTTCTTTTGGTTTTTCAGGTTCTTTAGGCTTTTCG
* *
120690517 GGTTCTTTGGGTTTTTCAGGTTCTTTGGGCTTTTCG
1 GGTTCTTTTGGTTTTTCAGGTTCTTTAGGCTTTTCG
120690553 GGTTCTTT
1 GGTTCTTT
120690561 AGGCTTCTCA
Statistics
Matches: 191, Mismatches: 29, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
35 32 0.17
36 156 0.82
37 3 0.02
ACGTcount: A:0.03, C:0.16, G:0.29, T:0.53
Consensus pattern (36 bp):
GGTTCTTTTGGTTTTTCAGGTTCTTTAGGCTTTTCG
Found at i:120690584 original size:54 final size:54
Alignment explanation
Indices: 120690302--120690572 Score: 294
Period size: 54 Copynumber: 5.0 Consensus size: 54
120690292 TGGTGGTGGT
* * * * * *
120690302 GGTTCTTTTGGTTTCTCAGGTTCCTTAGGCTTTTCGGGTTCTTTCGGCTTTTCG
1 GGTTCTTTAGGTTTCTCGGGTTCTTTGGGCTTTTCGGGTTCTTTAGGCTTTTCA
* * * * *
120690356 GGTTGTTTCGGTTTCTCGGGTTCTTTGGGTTTTTCGGGTTCTTTCGGCTTTTCG
1 GGTTCTTTAGGTTTCTCGGGTTCTTTGGGCTTTTCGGGTTCTTTAGGCTTTTCA
* * * *
120690410 GGTTGTTTAGGTTTCTCGGGTTCTTTGGG-TTTTCGGGTTCTTTTGGTTTTTCT
1 GGTTCTTTAGGTTTCTCGGGTTCTTTGGGCTTTTCGGGTTCTTTAGGCTTTTCA
* * * * * *
120690463 GGTGCTTTAGGCTTT-TCGGGTTCTTTTGGTTTTTCTGGTACTTTAGGCTTCTCA
1 GGTTCTTTAGG-TTTCTCGGGTTCTTTGGGCTTTTCGGGTTCTTTAGGCTTTTCA
* * * *
120690517 GGTTCTTTGGGTTTTTCAGGTTCTTTGGGCTTTTCGGGTTCTTTAGGCTTCTCA
1 GGTTCTTTAGGTTTCTCGGGTTCTTTGGGCTTTTCGGGTTCTTTAGGCTTTTCA
120690571 GG
1 GG
120690573 CTCCTTGGGT
Statistics
Matches: 188, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
53 46 0.24
54 142 0.76
ACGTcount: A:0.04, C:0.16, G:0.29, T:0.51
Consensus pattern (54 bp):
GGTTCTTTAGGTTTCTCGGGTTCTTTGGGCTTTTCGGGTTCTTTAGGCTTTTCA
Found at i:120694891 original size:3 final size:3
Alignment explanation
Indices: 120694883--120694913 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
120694873 TTTTTGAAAG
120694883 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
120694914 GTATATTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:120695081 original size:19 final size:18
Alignment explanation
Indices: 120695041--120695080 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
120695031 TTTTTAGGAG
*
120695041 TTTTATAAATATTTTGAA
1 TTTTAAAAATATTTTGAA
120695059 TTTTAAAAATTATTTTG-A
1 TTTTAAAAA-TATTTTGAA
120695077 TTTT
1 TTTT
120695081 TTGTAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (18 bp):
TTTTAAAAATATTTTGAA
Found at i:120695265 original size:22 final size:23
Alignment explanation
Indices: 120695220--120695265 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
120695210 TTGAGTTGAC
120695220 TCGAATAATTTGAATAATTAAAT
1 TCGAATAATTTGAATAATTAAAT
* *
120695243 TCGATTAATTTGAA-ATTTAAAT
1 TCGAATAATTTGAATAATTAAAT
120695265 T
1 T
120695266 TTTAAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.43
Consensus pattern (23 bp):
TCGAATAATTTGAATAATTAAAT
Found at i:120695324 original size:15 final size:15
Alignment explanation
Indices: 120695304--120695333 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
120695294 AATTTTGTTC
120695304 AACCCTAATCACCAT
1 AACCCTAATCACCAT
120695319 AACCCTAATCACCAT
1 AACCCTAATCACCAT
120695334 GACTGATGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (15 bp):
AACCCTAATCACCAT
Found at i:120702846 original size:6 final size:6
Alignment explanation
Indices: 120702835--120702864 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
120702825 ATATTTGTTG
120702835 AAATAT AAATAT AAATAT AAATAT AAATAT
1 AAATAT AAATAT AAATAT AAATAT AAATAT
120702865 TTAATTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
AAATAT
Found at i:120708176 original size:131 final size:130
Alignment explanation
Indices: 120707957--120708201 Score: 364
Period size: 131 Copynumber: 1.9 Consensus size: 130
120707947 AAAATTCTCT
*
120707957 AAAACGAAGGCAATACTCGATATTTGGCAATTCGAGAATCATGCCCTATCGTGCTGGGTTGCAAT
1 AAAACGAAGGCAATACTCGATATTTGGCAATTCGAGAATCATGCCCTATCGTGCTCGGTTGCAAT
* * * *
120708022 TTCCCGTTTGTTTAAAACAATCGAATATTTCTTTGGAATTTCGCTCATGTCTTTAAAAACCCTTC
66 TTCCCGTTTGTTCAAAACAATCGAATATTCCTTTAGAATTTCACTCATGTCTTTAAAAACCCTTC
* * * * *
120708087 AAAACGAAGGTAATACTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTCGGTTGCGA
1 AAAACGAAGGCAATACTCGATATTTGGCAATTC-GAGAATCATGCCCTATCGTGCTCGGTTGCAA
* * *
120708152 TTTCCTGTTTGTTCAAAATAATCGAATCTTCCTTTAGAATTTCACTCATG
65 TTTCCCGTTTGTTCAAAACAATCGAATATTCCTTTAGAATTTCACTCATG
120708202 ATTCTCTAAA
Statistics
Matches: 101, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
130 31 0.31
131 70 0.69
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (130 bp):
AAAACGAAGGCAATACTCGATATTTGGCAATTCGAGAATCATGCCCTATCGTGCTCGGTTGCAAT
TTCCCGTTTGTTCAAAACAATCGAATATTCCTTTAGAATTTCACTCATGTCTTTAAAAACCCTTC
Found at i:120711770 original size:35 final size:35
Alignment explanation
Indices: 120711726--120711892 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
120711716 TCCTCATTGA
** *
120711726 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
120711761 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
120711801 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
120711836 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
120711871 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
120711893 CTTTTCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:120711809 original size:75 final size:73
Alignment explanation
Indices: 120711721--120711892 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
120711711 GGTTTTCCTC
** * * **
120711721 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
120711785 TCAGTATGG
65 TCAGTATGG
*
120711794 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
120711859 CTCAGTATGG
64 CTCAGTATGG
120711869 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
120711893 CTTTTCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:120725073 original size:176 final size:176
Alignment explanation
Indices: 120724415--120725073 Score: 928
Period size: 176 Copynumber: 3.7 Consensus size: 176
120724405 GCATATTGAG
* ** *
120724415 CCTGCTCCACTGCAACTTCAGAGGGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACAT
1 CCTGCT-CTCTGCAACTTCAGAGAAATAAGGCTGGTGGCTAAAATCTACTCCATAGCCGATACAT
* * * ** *
120724480 GGAGATAAGACTCACCATCTTCGATCTGCTCTATAGCCAATACATAAAGATAAGATCTGTAA-TC
65 GGAGATAAGACTCACCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTT
* * * *
120724544 TTCGATTTGCTTCCTGCAACTTTAGGAAGACAAGACTTGTATCTTCAA
130 TTAG-TCTGCTTCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAA
* * * *
120724592 CCTGCTCTCTGCAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATATATA
1 CCTGCTCTCTGCAACTTCAGAGAAATAAGGCTGGTGGCTAAAATCTACTCCATAGCCGATACATG
* * *
120724657 GAGATAAGACTCGCCATTTTTGATCTGCTCCATAGTCGATACATGGAGATAAGATCTGTAATTTT
66 GAGATAAGACTCACCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTT
* *
120724722 CAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACTTGCATCTTCAA
131 TAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAA
*
120724768 CCTGCTCTCTGCAACTTCA-AAAAGATAAGGCTGGTGGCTAAAATCTACTCCATAGCCGATACAT
1 CCTGCTCTCTGCAACTTCAGAGAA-ATAAGGCTGGTGGCTAAAATCTACTCCATAGCCGATACAT
* * * *
120724832 GGAGATAAGACTCGCCATTTTTGATTTGCTCGATAGCCGATACATGGAGATAAGATCTGTAATTT
65 GGAGATAAGACTCACCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTT
120724897 TTAGTCAT-CTTCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAA
130 TTAGTC-TGCTTCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAA
* * * * * * *
120724944 CCTGCTCTCCGTAACTTCAGAGAAATAAGGTTAGTAGCTAAAATCTACTCCATAACCAATACATG
1 CCTGCTCTCTGCAACTTCAGAGAAATAAGGCTGGTGGCTAAAATCTACTCCATAGCCGATACATG
* *
120725009 GAGATAAGACTCACCATTTTCGATCTACTCCATAACCGATACATGGAGATAAGATCTGTAATTTT
66 GAGATAAGACTCACCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTT
120725074 CACCGATGTC
Statistics
Matches: 435, Mismatches: 43, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
175 2 0.00
176 420 0.97
177 13 0.03
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (176 bp):
CCTGCTCTCTGCAACTTCAGAGAAATAAGGCTGGTGGCTAAAATCTACTCCATAGCCGATACATG
GAGATAAGACTCACCATTTTCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTT
TAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACTTGTATCTTCAA
Found at i:120735627 original size:93 final size:93
Alignment explanation
Indices: 120735515--120735685 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
120735505 GCCCATAAGT
* *
120735515 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
120735580 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
120735608 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
120735673 CGAGTTCGGATGC
66 CGAGTTCGGATGC
120735686 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:120735682 original size:46 final size:46
Alignment explanation
Indices: 120735507--120735687 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
120735497 TGTAACCCGC
* * **
120735507 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
120735553 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
120735603 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
120735646 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
120735688 AACCATCCTA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 71 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:120739958 original size:22 final size:21
Alignment explanation
Indices: 120739920--120739964 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
120739910 AAAAAGAACC
120739920 AAATTATACATAAATAAATTT
1 AAATTATACATAAATAAATTT
* *
120739941 AAATATATATATATATAAATTT
1 AAAT-TATACATAAATAAATTT
120739963 AA
1 AA
120739965 GAAAATACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AAATTATACATAAATAAATTT
Found at i:120742024 original size:45 final size:45
Alignment explanation
Indices: 120741842--120742044 Score: 144
Period size: 45 Copynumber: 4.6 Consensus size: 45
120741832 GAATTTACAG
* * * * *
120741842 ATCTCGTCTCCCTAAAATTACAGTGGAGTAGATTGAAGACGGTGA
1 ATCTTGTCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGTGA
* * * ** ****
120741887 ATCTTGTCTTCCTGAAGTTGCAGTGAAGCAGATTTAAG-CTACCA
1 ATCTTGTCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGTGA
** * * * * **
120741931 CGC-TATCTCCCTAAAATTGCAGTGGAGCAG-GCTGAAAATTGT-A
1 ATCTTGTCTCCCTAAAGTTGCAGTGGAGCAGATC-GAAGACGGTGA
120741974 GATCTTGTCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGTGA
1 -ATCTTGTCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGTGA
* *
120742020 ATCTTGTCTTCCTGAAGTTGCAGTG
1 ATCTTGTCTCCCTAAAGTTGCAGTG
120742045 AAGTAGATTA
Statistics
Matches: 116, Mismatches: 36, Indels: 12
0.71 0.22 0.07
Matches are distributed among these distances:
43 25 0.22
44 5 0.04
45 84 0.72
46 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (45 bp):
ATCTTGTCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGTGA
Found at i:120745087 original size:131 final size:130
Alignment explanation
Indices: 120744868--120745104 Score: 384
Period size: 131 Copynumber: 1.8 Consensus size: 130
120744858 AAAATTCTCT
*
120744868 AAAACAAAGGCAATACTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCATGCTGGGTTGCGAT
1 AAAACAAAGGCAATACTCGATGTTTGACAATTCGGGAATCGTGCCCTATCATGCTGGGTTGCGAT
*
120744933 TTCCCGTTTGTTCAAAACAATCGAATATTCCTTTGGAATTTTGCTCATGTCTTTAAAAACCCTTC
66 TTCCCGTTTGTTCAAAACAATCGAATATTCCTTTAGAATTTTGCTCATGTCTTTAAAAACCCTTC
* * * *
120744998 AAAACGAAGGTAATACTCGATGTTTGACAATTCGAGGAATCGTGCCCTATCGTTCTGGGTTGCGA
1 AAAACAAAGGCAATACTCGATGTTTGACAATTCG-GGAATCGTGCCCTATCATGCTGGGTTGCGA
* * *
120745063 TTTCCTGTTTGTTCAAAATAATCGAATATTTCTTTAGAATTT
65 TTTCCCGTTTGTTCAAAACAATCGAATATTCCTTTAGAATTT
120745105 CACGTATGAT
Statistics
Matches: 97, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
130 31 0.32
131 66 0.68
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (130 bp):
AAAACAAAGGCAATACTCGATGTTTGACAATTCGGGAATCGTGCCCTATCATGCTGGGTTGCGAT
TTCCCGTTTGTTCAAAACAATCGAATATTCCTTTAGAATTTTGCTCATGTCTTTAAAAACCCTTC
Found at i:120747949 original size:30 final size:30
Alignment explanation
Indices: 120747913--120747972 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
120747903 ACTTAACAAG
120747913 CAAATGTCTCTAAAATAATAAAAAAATTAA
1 CAAATGTCTCTAAAATAATAAAAAAATTAA
* *
120747943 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAAAAAAATTAA
120747973 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.10, G:0.03, T:0.28
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAAAAAAATTAA
Found at i:120750677 original size:46 final size:46
Alignment explanation
Indices: 120750523--120750744 Score: 222
Period size: 46 Copynumber: 4.8 Consensus size: 46
120750513 AGGTTATTGT
* * *
120750523 GAGCTAGTGTAAGACATGTCTGGGACATGTATCGGCCAC-ATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGA
* * * * *
120750569 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGA
*
120750617 GAGCTAGTGTAAGACATGTTTGGGACATGCA-CTGGCCTCGAGATGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-GGCCTCGAGATG-A
* *
120750664 -AGCTAGTGTAAGACATGTTTGGGACATGCATCGG-CTATGAGAT--
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGA
*
120750707 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
120750745 ATCCTACCCC
Statistics
Matches: 148, Mismatches: 17, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
44 12 0.08
45 16 0.11
46 68 0.46
47 29 0.20
48 22 0.15
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGA
Found at i:120751927 original size:20 final size:19
Alignment explanation
Indices: 120751902--120751939 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
120751892 TTAAAATGGT
120751902 CACACGGGCGTGTTGCCCCC
1 CACACGGGCGTG-TGCCCCC
120751922 CACACGGGCGTGTGCCCC
1 CACACGGGCGTGTGCCCC
120751940 TGTATTTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.11, C:0.45, G:0.32, T:0.13
Consensus pattern (19 bp):
CACACGGGCGTGTGCCCCC
Found at i:120752515 original size:65 final size:64
Alignment explanation
Indices: 120752431--120752553 Score: 167
Period size: 64 Copynumber: 1.9 Consensus size: 64
120752421 GAATTAGAGA
* * * *
120752431 ACTAAATTGACAAATTTTGTAAAT-ATTGAGAGCTAAATTTATTGATTTTTTTATTTATAATTCG
1 ACTAAAATGACAAACTTTGTAAATGA-TGA-AGCTAAATTTATTGAATTTTTTATATATAATTCG
120752495 G
64 G
* *
120752496 ACTAAAATGACAAACTTTGTAAATGATGAAGGTAAATTTGTTGAATTTTTTATATATA
1 ACTAAAATGACAAACTTTGTAAATGATGAAGCTAAATTTATTGAATTTTTTATATATA
120752554 GAATTAAAAC
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
64 25 0.49
65 25 0.49
66 1 0.02
ACGTcount: A:0.38, C:0.06, G:0.13, T:0.43
Consensus pattern (64 bp):
ACTAAAATGACAAACTTTGTAAATGATGAAGCTAAATTTATTGAATTTTTTATATATAATTCGG
Found at i:120753672 original size:31 final size:28
Alignment explanation
Indices: 120753627--120753706 Score: 81
Period size: 30 Copynumber: 2.7 Consensus size: 28
120753617 CAGCTCATAC
*
120753627 TATATTTTTTATTTTTAAAAAATATATTTA
1 TATATTTTTAATTTTTAAAAAATA-A-TTA
**
120753657 TATTATTTTTAA-TTTTAATTTAATAATTA
1 TA-TATTTTTAATTTTTAA-AAAATAATTA
120753686 TATATTTTTAATTTATTAAAA
1 TATATTTTTAATTT-TTAAAA
120753707 TTTAATATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
28 9 0.22
29 7 0.17
30 13 0.32
31 12 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (28 bp):
TATATTTTTAATTTTTAAAAAATAATTA
Found at i:120753823 original size:25 final size:26
Alignment explanation
Indices: 120753795--120753846 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
120753785 TGTTATAAAT
*
120753795 TATAAAATATATA-AAAA-TAACAAAA
1 TATAAAATAT-TAGAAAATTAAAAAAA
*
120753820 TATAATATATTAGAAAATTAAAAAAA
1 TATAAAATATTAGAAAATTAAAAAAA
120753846 T
1 T
120753847 TGAGTTGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 2 0.09
25 13 0.57
26 8 0.35
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (26 bp):
TATAAAATATTAGAAAATTAAAAAAA
Found at i:120753923 original size:30 final size:30
Alignment explanation
Indices: 120753884--120753940 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
120753874 TAAACGAACA
* *
120753884 TAATTTTTTTA-CTTAAATTTTTTTAAAATT
1 TAATATTTTTATC-TAAATTTCTTTAAAATT
120753914 TAATATTTTTATCTAAATTTCTTTAAA
1 TAATATTTTTATCTAAATTTCTTTAAA
120753941 TTTGGAATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (30 bp):
TAATATTTTTATCTAAATTTCTTTAAAATT
Found at i:120755454 original size:2 final size:2
Alignment explanation
Indices: 120755447--120755488 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
120755437 CCTATTCTTT
120755447 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
120755488 T
1 T
120755489 TTTTAAAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:120761398 original size:2 final size:2
Alignment explanation
Indices: 120761391--120761421 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
120761381 TGGTTTTATT
120761391 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
120761422 TTACATAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:120766991 original size:2 final size:2
Alignment explanation
Indices: 120766984--120767008 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
120766974 TAAATCTATT
120766984 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
120767009 TATTTTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:120767411 original size:2 final size:2
Alignment explanation
Indices: 120767404--120767435 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
120767394 TAAAATTTAC
*
120767404 AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
120767436 GTGTTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:120768342 original size:131 final size:130
Alignment explanation
Indices: 120768084--120768694 Score: 667
Period size: 130 Copynumber: 4.7 Consensus size: 130
120768074 TTATAATCAT
* * * * * * *
120768084 TCATGTTTTCTAAAAATCCTTTAAAACGAAGGCAATGTTCAATATTTGGTAATTTGCGGAATCGT
1 TCATGTTTT-TAAAAATTCTATAAAACGAAGGTAATGTTCGATGTTTGGCAATTCG-GGAATCGT
* * * * * * * *
120768149 GCCCTAACGTGTTGGGTTGCAATTCCTCGTTTGCTCAAAATAATCGAAT-GTCCATTTAGAATTT
64 GCCCTATCGTGCTGGGTTGCGATTTCTCGTTCGTTCAAAACAATCGAATATTCC-TTTAGAATTT
*
120768213 CAT
128 CAC
* * ** *
120768216 TCATGTTTTCTAAAAACTCTTTAAAACGAAGGTAATACTCGATGTTTGGCAATTCGGGAACCGTG
1 TCATGTTTT-TAAAAATTCTATAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGAATCGTG
* * *
120768281 CCCTATCGTGCAGGGTTGCGATTTCTCGTTCGTTCAAAACAATCGAATATTTCTTTGGAATTTCA
65 CCCTATCGTGCTGGGTTGCGATTTCTCGTTCGTTCAAAACAATCGAATATTCCTTTAGAATTTCA
120768346 C
130 C
* * * *
120768347 CCAT-TTCTTTAAAGATTCTATAAAACGAAGGTAATGTTCGATGTTTGGCAATTCAGGAATCATG
1 TCATGTT-TTTAAAAATTCTATAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGAATCGTG
* * *
120768411 CCCTATCGTGCTGGGTTGCGATTTCCCGTTCGTTCAAAACAATCGAATATTTCTTTGGAATTTCA
65 CCCTATCGTGCTGGGTTGCGATTTCTCGTTCGTTCAAAACAATCGAATATTCCTTTAGAATTTCA
120768476 C
130 C
* * *
120768477 CCATGTCTTTAAAGATTCTATAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTG
1 TCATGTTTTTAAAAATTCTATAAAACGAAGGTAATGTTCGATGTTTGGCAATTC-GGGAATCGTG
* * * * *
120768542 CCCTATCATGCTGGGTTGCGATTTCT-TTTGGTTCAAAATAATCGAATATCCCCTTTAGAATTTC
65 CCCTATCGTGCTGGGTTGCGATTTCTCGTTCGTTCAAAACAATCGAATAT-TCCTTTAGAATTTC
120768606 AC
129 AC
* * * * * * * *
120768608 TCATGTTTTTTAAAATTCTA-AAAA-TAGGGCAATGTCCGATGTTTAGAAACTCGAGGAATCGTG
1 TCATGTTTTTAAAAATTCTATAAAACGAAGGTAATGTTCGATGTTTGGCAATTCG-GGAATCGTG
*
120768671 CCCTA-CTGTGCTGGGTTTCGATTT
65 CCCTATC-GTGCTGGGTTGCGATTT
120768695 TTTTGTTGGA
Statistics
Matches: 415, Mismatches: 57, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
128 2 0.00
129 50 0.12
130 188 0.45
131 126 0.30
132 49 0.12
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.35
Consensus pattern (130 bp):
TCATGTTTTTAAAAATTCTATAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGAATCGTGC
CCTATCGTGCTGGGTTGCGATTTCTCGTTCGTTCAAAACAATCGAATATTCCTTTAGAATTTCAC
Found at i:120769292 original size:13 final size:13
Alignment explanation
Indices: 120769274--120769298 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
120769264 TCTTCAATTG
120769274 TTGAAAAGTATTT
1 TTGAAAAGTATTT
120769287 TTGAAAAGTATT
1 TTGAAAAGTATT
120769299 ATATAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (13 bp):
TTGAAAAGTATTT
Found at i:120770646 original size:22 final size:20
Alignment explanation
Indices: 120770609--120770648 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
120770599 AACACATAAA
*
120770609 AATAAATTATTCAAAATTTG
1 AATAAATTATTAAAAATTTG
120770629 AATAAATTATATTAAAAATT
1 AATAAA-T-TATTAAAAATT
120770649 CTATTATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 1 0.06
22 10 0.59
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (20 bp):
AATAAATTATTAAAAATTTG
Found at i:120776222 original size:1 final size:1
Alignment explanation
Indices: 120776212--120776252 Score: 73
Period size: 1 Copynumber: 41.0 Consensus size: 1
120776202 TGAAATTTGC
*
120776212 TTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
120776253 GATATGGCTG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.00, C:0.00, G:0.02, T:0.98
Consensus pattern (1 bp):
T
Found at i:120776654 original size:162 final size:163
Alignment explanation
Indices: 120776387--120776711 Score: 634
Period size: 162 Copynumber: 2.0 Consensus size: 163
120776377 ACTTGTAATG
120776387 TAGTTGTCAAATAACAGTAGATTATTACAGCAAATTTGCTTCAACACAAAAGAATCTTTATTCAA
1 TAGTTGTCAAATAACAGTAGATTATTACAGCAAATTTGCTTCAACACAAAAGAATCTTTATTCAA
120776452 TGATGGCTGACAGGTTGAGAATCAAAGAATTTATTTTATGAATTCTACAAGCGGCAATTACTGCT
66 TGATGGCTGACAGGTTGAGAATCAAAGAATTTATTTTATGAATTCTACAAGCGGCAATTACTGCT
120776517 TATTGAGGTCATG-TATTGAAGTACATATAGCC
131 TATTGAGGTCATGATATTGAAGTACATATAGCC
120776549 TAGTTGTCAAATAACAGTAGATTATTACAGCAAATTTGCTTCAACACAAAAGAATCTTTATTCAA
1 TAGTTGTCAAATAACAGTAGATTATTACAGCAAATTTGCTTCAACACAAAAGAATCTTTATTCAA
120776614 TGATGGCTGACAGGTTGAGAATCAAAGAATTTATTTTATGAATTCTACAAGCGGCAATTACTGCT
66 TGATGGCTGACAGGTTGAGAATCAAAGAATTTATTTTATGAATTCTACAAGCGGCAATTACTGCT
120776679 TATTGAGGTCATGAATATTGAAGTACATATAGC
131 TATTGAGGTCATG-ATATTGAAGTACATATAGC
120776712 TCTTTTCGTT
Statistics
Matches: 161, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
162 143 0.89
164 18 0.11
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (163 bp):
TAGTTGTCAAATAACAGTAGATTATTACAGCAAATTTGCTTCAACACAAAAGAATCTTTATTCAA
TGATGGCTGACAGGTTGAGAATCAAAGAATTTATTTTATGAATTCTACAAGCGGCAATTACTGCT
TATTGAGGTCATGATATTGAAGTACATATAGCC
Found at i:120787546 original size:14 final size:15
Alignment explanation
Indices: 120787527--120787555 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
120787517 TTGATATTTG
120787527 TAAATATTT-TATAT
1 TAAATATTTATATAT
120787541 TAAATATTTATATAT
1 TAAATATTTATATAT
120787556 GTATATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TAAATATTTATATAT
Found at i:120787790 original size:28 final size:30
Alignment explanation
Indices: 120787731--120787791 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
120787721 CTCATTAACT
* * *
120787731 ATATAAAATATTATTTAATAAACTTCACAA
1 ATATAAAATATCATTAAACAAACTTCACAA
*
120787761 ATATAATATATCATTAAACAAAC-TCA-AA
1 ATATAAAATATCATTAAACAAACTTCACAA
120787789 ATA
1 ATA
120787792 AACAAACAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 5 0.19
29 3 0.11
30 19 0.70
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (30 bp):
ATATAAAATATCATTAAACAAACTTCACAA
Found at i:120797004 original size:32 final size:32
Alignment explanation
Indices: 120796958--120797031 Score: 80
Period size: 32 Copynumber: 2.2 Consensus size: 32
120796948 TTGAATTCAC
*
120796958 AAAAATTAACATTTA-TAAAGTAATATAAAATTAA
1 AAAAATT-ACATTTATTAAAG-AAAATAAAA-TAA
*
120796992 AAAAATTA-ATTTATTTAAAGAAAATTAAATAA
1 AAAAATTACATTTA-TTAAAGAAAATAAAATAA
120797024 AAAAATTA
1 AAAAATTA
120797032 TTTTCATTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
32 16 0.44
33 8 0.22
34 12 0.33
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (32 bp):
AAAAATTACATTTATTAAAGAAAATAAAATAA
Found at i:120797956 original size:20 final size:20
Alignment explanation
Indices: 120797933--120797972 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
120797923 TATTCAAACT
* *
120797933 ATATTACTTGAATAGTTATA
1 ATATTACATGAATAATTATA
*
120797953 ATATTAGATGAATAATTATA
1 ATATTACATGAATAATTATA
120797973 TGTCTTTGTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.42
Consensus pattern (20 bp):
ATATTACATGAATAATTATA
Found at i:120798796 original size:14 final size:14
Alignment explanation
Indices: 120798777--120798803 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
120798767 TGGACTTCTA
120798777 TCAATAAAATTGGC
1 TCAATAAAATTGGC
120798791 TCAATAAAATTGG
1 TCAATAAAATTGG
120798804 GTTTTGTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (14 bp):
TCAATAAAATTGGC
Found at i:120800216 original size:20 final size:20
Alignment explanation
Indices: 120800192--120800252 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
120800182 AAAATATTAT
120800192 AAAAT-TTTATAAAATTAAA
1 AAAATATTTATAAAATTAAA
* *
120800211 AGAAATCA-TTATAAAAATATA
1 A-AAAT-ATTTATAAAATTAAA
*
120800232 AAAATATTTGTAAAATTAAA
1 AAAATATTTATAAAATTAAA
120800252 A
1 A
120800253 TATATGATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
19 2 0.06
20 19 0.58
21 12 0.36
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (20 bp):
AAAATATTTATAAAATTAAA
Found at i:120800228 original size:32 final size:32
Alignment explanation
Indices: 120800161--120800226 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
120800151 ATATTATTTT
120800161 AAATTTTACAAAATTAAGATAAAAATATTATA
1 AAATTTTACAAAATTAAGATAAAAATATTATA
* *
120800193 AAATTTTATAAAATTAA-A-AGAAATCATTATA
1 AAATTTTACAAAATTAAGATAAAAAT-ATTATA
120800224 AAA
1 AAA
120800227 ATATAAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
30 5 0.16
31 10 0.32
32 16 0.52
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (32 bp):
AAATTTTACAAAATTAAGATAAAAATATTATA
Found at i:120801699 original size:19 final size:20
Alignment explanation
Indices: 120801665--120801714 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
120801655 AGGGTTTGGA
** *
120801665 AGAAAGTAAATTTTTTTAGG
1 AGAAAGTAAAAGTTTTGAGG
120801685 AG-AAGTAAAAGTTTTGAGG
1 AGAAAGTAAAAGTTTTGAGG
*
120801704 GGAAAGTAAAA
1 AGAAAGTAAAA
120801715 AGAAAAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.46, C:0.00, G:0.26, T:0.28
Consensus pattern (20 bp):
AGAAAGTAAAAGTTTTGAGG
Found at i:120814988 original size:46 final size:46
Alignment explanation
Indices: 120814935--120815254 Score: 417
Period size: 46 Copynumber: 7.0 Consensus size: 46
120814925 GCTTTTTGAA
* * * *
120814935 ATGAAATGTGTAAGACCATGGTTGAAAGATAACATGGTAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
120814981 ATGAAATGTGTAAGACCATGGTTGAAAGATATCATGACAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
120815027 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
120815073 AGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
120815119 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
120815165 ATGAAATGAACAAGGCCATGGTTGAAAGATACCATGGTAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
120815211 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
120815255 TCAAAGATAA
Statistics
Matches: 248, Mismatches: 25, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.00
46 247 1.00
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:120815006 original size:21 final size:21
Alignment explanation
Indices: 120814982--120815053 Score: 65
Period size: 21 Copynumber: 3.2 Consensus size: 21
120814972 TAACATGATA
120814982 TGAAATGTGTAAGACCATGGT
1 TGAAATGTGTAAGACCATGGT
* * *
120815003 TGAAA-GATATCATGACAACATGAT
1 TGAAATG-TGT-AAGAC--CATGGT
120815027 ATGAAATGTGTAAGACCATGGT
1 -TGAAATGTGTAAGACCATGGT
120815049 TGAAA
1 TGAAA
120815054 GATACCATGG
Statistics
Matches: 39, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
20 1 0.03
21 12 0.31
22 9 0.23
24 9 0.23
25 7 0.18
26 1 0.03
ACGTcount: A:0.40, C:0.10, G:0.24, T:0.26
Consensus pattern (21 bp):
TGAAATGTGTAAGACCATGGT
Found at i:120818278 original size:3 final size:3
Alignment explanation
Indices: 120818270--120818317 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
120818260 GTCTATGCCA
120818270 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
120818318 TGCAATCATG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:120823490 original size:12 final size:11
Alignment explanation
Indices: 120823465--120823489 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
120823455 TGCACTTCCG
120823465 TTTCCCAATTT
1 TTTCCCAATTT
120823476 TTTCCCAATTT
1 TTTCCCAATTT
120823487 TTT
1 TTT
120823490 TTGGTGAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTCCCAATTT
Found at i:120823873 original size:37 final size:34
Alignment explanation
Indices: 120823843--120823906 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
120823833 GATTCTTCTC
120823843 TCTTTT-TTCAAA-TAGTCTTGGTTTTAAGATTCA
1 TCTTTTCTT-AAATTAGTCTTGGTTTTAAGATTCA
*
120823876 TCTTTTCTTAAATTAGTATTGGTTTTAAGAT
1 TCTTTTCTTAAATTAGTCTTGGTTTTAAGAT
120823907 CTGTGTCTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 9 0.32
34 19 0.68
ACGTcount: A:0.25, C:0.09, G:0.12, T:0.53
Consensus pattern (34 bp):
TCTTTTCTTAAATTAGTCTTGGTTTTAAGATTCA
Found at i:120825124 original size:96 final size:97
Alignment explanation
Indices: 120824984--120825172 Score: 247
Period size: 96 Copynumber: 2.0 Consensus size: 97
120824974 ACCTTGTGCA
* * *
120824984 GCAGGTTTTATTAACTATTGGAATATTTTTATCTTATGATGTGAATTTGTAGTCGAATATAGATA
1 GCAGGTTTTATTAACTATTGGAATATTTATATCTTATGATGTGAATTCGTAGCCGAATATAGATA
* *
120825049 TTGTATCTGTAGCAGCATTGTTTGATGGGACT
66 TCGTATCTGGAGCAGCATTGTTTGATGGGACT
* * * * * *
120825081 GCAGGATTTTA-TAATTTTTGGAATA-TTATATCTTATTATGTGAATTCGTGGCCGAATATTGGT
1 GCAGG-TTTTATTAACTATTGGAATATTTATATCTTATGATGTGAATTCGTAGCCGAATATAGAT
*
120825144 ATCGTATTTGGAGCAGCATTGTTTGATGG
65 ATCGTATCTGGAGCAGCATTGTTTGATGG
120825173 TGATTATTGA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
96 57 0.72
97 17 0.22
98 5 0.06
ACGTcount: A:0.26, C:0.08, G:0.23, T:0.43
Consensus pattern (97 bp):
GCAGGTTTTATTAACTATTGGAATATTTATATCTTATGATGTGAATTCGTAGCCGAATATAGATA
TCGTATCTGGAGCAGCATTGTTTGATGGGACT
Found at i:120834619 original size:26 final size:26
Alignment explanation
Indices: 120834590--120834643 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
120834580 TATATTTATA
* *
120834590 TTAATTTTATTA-TCGATATTTAGGAT
1 TTAATTTTATAATTC-ATATTTAAGAT
120834616 TTAATTTTATAATTCATATTTAAGAT
1 TTAATTTTATAATTCATATTTAAGAT
120834642 TT
1 TT
120834644 GTAACTATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.56
Consensus pattern (26 bp):
TTAATTTTATAATTCATATTTAAGAT
Found at i:120841636 original size:21 final size:21
Alignment explanation
Indices: 120841610--120841652 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
120841600 GAGTATGGAC
120841610 AATATAACCTCACATTTTAAA
1 AATATAACCTCACATTTTAAA
120841631 AATATAACCTCACATTTTAAA
1 AATATAACCTCACATTTTAAA
120841652 A
1 A
120841653 TTGGAACCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.49, C:0.19, G:0.00, T:0.33
Consensus pattern (21 bp):
AATATAACCTCACATTTTAAA
Found at i:120841660 original size:21 final size:21
Alignment explanation
Indices: 120841610--120841663 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
120841600 GAGTATGGAC
*
120841610 AATATAACCTCACATTTTAAA
1 AATAGAACCTCACATTTTAAA
*
120841631 AATATAACCTCACATTTTAAA
1 AATAGAACCTCACATTTTAAA
* *
120841652 ATTGGAACCTCA
1 AATAGAACCTCA
120841664 GCTAATTCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.44, C:0.20, G:0.04, T:0.31
Consensus pattern (21 bp):
AATAGAACCTCACATTTTAAA
Found at i:120854402 original size:42 final size:42
Alignment explanation
Indices: 120854346--120854547 Score: 230
Period size: 42 Copynumber: 4.8 Consensus size: 42
120854336 TTAGGGTTAT
* *
120854346 TGAGATTTCGTGTAAGACCATATCTGGGATATGACATCGATA
1 TGAGACTTCATGTAAGACCATATCTGGGATATGACATCGATA
* *
120854388 TGAGACTTCATGTAAGAACATATTTGGGATATGACATCGATA
1 TGAGACTTCATGTAAGACCATATCTGGGATATGACATCGATA
* * * *
120854430 TGAGACTTCGTGTAAGACTATATCTAGGATATGGCATCGATA
1 TGAGACTTCATGTAAGACCATATCTGGGATATGACATCGATA
* * *
120854472 TGAGACTTCATGTAAGACCATAGCTGTGCCAT-TCG-CATCGGTA
1 TGAGACTTCATGTAAGACCATATCTG-G-GATAT-GACATCGATA
**
120854515 CAAGA-TTACATGTAAGACCATATCTGGGATATG
1 TGAGACTT-CATGTAAGACCATATCTGGGATATG
120854548 GCATTGGTAC
Statistics
Matches: 135, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
41 3 0.02
42 100 0.74
43 29 0.21
44 3 0.02
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (42 bp):
TGAGACTTCATGTAAGACCATATCTGGGATATGACATCGATA
Found at i:120857289 original size:49 final size:46
Alignment explanation
Indices: 120857204--120857310 Score: 142
Period size: 49 Copynumber: 2.3 Consensus size: 46
120857194 AAATATAATG
* **
120857204 GTTTTGCCTTTTAACTTAATGAGTAAACATTTATCAAAATGACGTA
1 GTTTTGCCTTTTAACTTAAAGAGTAAACATTTATCAAAACAACGTA
* *
120857250 GTTTTGACTTTTAACTTTAGAAGTAGTAAACATTTATCAAAACAACGTT
1 GTTTTGCCTTTTAAC-TTA-AAG-AGTAAACATTTATCAAAACAACGTA
120857299 GTTTTGCCTTTT
1 GTTTTGCCTTTT
120857311 CTTATTTAGA
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
46 14 0.27
47 3 0.06
48 2 0.04
49 33 0.63
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (46 bp):
GTTTTGCCTTTTAACTTAAAGAGTAAACATTTATCAAAACAACGTA
Found at i:120857695 original size:21 final size:21
Alignment explanation
Indices: 120857669--120857711 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
120857659 ATTCATTTAA
120857669 TAAATGTATCCTTGGGTTTTC
1 TAAATGTATCCTTGGGTTTTC
120857690 TAAATGTATCCTTGGGTTTTC
1 TAAATGTATCCTTGGGTTTTC
120857711 T
1 T
120857712 CGAAGCAAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.49
Consensus pattern (21 bp):
TAAATGTATCCTTGGGTTTTC
Found at i:120859701 original size:18 final size:18
Alignment explanation
Indices: 120859678--120859713 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
120859668 TTTTTACTTA
120859678 ATTCAATAATGTTATGTT
1 ATTCAATAATGTTATGTT
120859696 ATTCAATAATGTTATGTT
1 ATTCAATAATGTTATGTT
120859714 TAAACATGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.11, T:0.50
Consensus pattern (18 bp):
ATTCAATAATGTTATGTT
Found at i:120860143 original size:26 final size:26
Alignment explanation
Indices: 120860107--120860213 Score: 157
Period size: 26 Copynumber: 4.2 Consensus size: 26
120860097 TGATACAAAT
120860107 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
120860133 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
120860159 TG---ATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
120860182 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
120860208 TGATAA
1 TGATAA
120860214 GAATTTCATG
Statistics
Matches: 76, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
23 21 0.28
26 55 0.72
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:120860172 original size:49 final size:49
Alignment explanation
Indices: 120860115--120860211 Score: 167
Period size: 49 Copynumber: 2.0 Consensus size: 49
120860105 ATTGATAATA
120860115 GGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATG
1 GGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATG
* * *
120860164 GGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCATGAT
1 GGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGAT
120860212 AAGAATTTCA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (49 bp):
GGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATG
Found at i:120861726 original size:26 final size:26
Alignment explanation
Indices: 120861697--120861749 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
120861687 TTTACAGTTT
120861697 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
120861723 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
120861749 T
1 T
120861750 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:120863522 original size:4 final size:4
Alignment explanation
Indices: 120863513--120863546 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
120863503 ACAGAACGGC
120863513 TACA TACA TACA TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TACA TACA TACA TA
120863547 TATATATGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:120866214 original size:21 final size:19
Alignment explanation
Indices: 120866189--120866249 Score: 52
Period size: 20 Copynumber: 3.1 Consensus size: 19
120866179 TAAATAAATT
120866189 AACTTATAA-AAATATTTGAAA
1 AACTTA-AATAAAT-TTT-AAA
120866210 AACTTAAATAAATTTTAAA
1 AACTTAAATAAATTTTAAA
* * *
120866229 AAGTTAATTTAAATTTGAAA
1 AACTTAA-ATAAATTTTAAA
120866249 A
1 A
120866250 GGTTAATTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
19 9 0.26
20 16 0.46
21 10 0.29
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (19 bp):
AACTTAAATAAATTTTAAA
Found at i:120866224 original size:19 final size:20
Alignment explanation
Indices: 120866202--120866249 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
120866192 TTATAAAAAT
120866202 ATTTGAAAAACTTAA-ATAA
1 ATTTGAAAAACTTAATATAA
* * *
120866221 ATTTTAAAAAGTTAATTTAA
1 ATTTGAAAAACTTAATATAA
120866241 ATTTGAAAA
1 ATTTGAAAA
120866250 GGTTAATTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.38
Consensus pattern (20 bp):
ATTTGAAAAACTTAATATAA
Found at i:120866241 original size:20 final size:20
Alignment explanation
Indices: 120866202--120866263 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
120866192 TTATAAAAAT
* *
120866202 ATTTGAAAAACTTAA-ATAA
1 ATTTGAAAAAGTTAATTTAA
*
120866221 ATTTTAAAAAGTTAATTTAA
1 ATTTGAAAAAGTTAATTTAA
* *
120866241 ATTTGAAAAGGTTAATTAAA
1 ATTTGAAAAAGTTAATTTAA
120866261 ATT
1 ATT
120866264 GAATGGACAA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
19 13 0.36
20 23 0.64
ACGTcount: A:0.52, C:0.02, G:0.08, T:0.39
Consensus pattern (20 bp):
ATTTGAAAAAGTTAATTTAA
Found at i:120866265 original size:19 final size:20
Alignment explanation
Indices: 120866204--120866266 Score: 58
Period size: 19 Copynumber: 3.2 Consensus size: 20
120866194 ATAAAAATAT
* * *
120866204 TTGAAAAACTTAA-ATAAAT
1 TTGAAAAAGTTAATTTAAAA
* *
120866223 TTTAAAAAGTTAATTTAAAT
1 TTGAAAAAGTTAATTTAAAA
*
120866243 TTGAAAAGGTTAA-TTAAAA
1 TTGAAAAAGTTAATTTAAAA
120866262 TTGAA
1 TTGAA
120866267 TGGACAAATG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
19 21 0.57
20 16 0.43
ACGTcount: A:0.52, C:0.02, G:0.10, T:0.37
Consensus pattern (20 bp):
TTGAAAAAGTTAATTTAAAA
Found at i:120866998 original size:4 final size:4
Alignment explanation
Indices: 120866991--120867026 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
120866981 ATATGCATGC
* *
120866991 CTAT CTAT TTAT CTAT CTAT CTAT CTAT CTTT CTAT
1 CTAT CTAT CTAT CTAT CTAT CTAT CTAT CTAT CTAT
120867027 ACAGTAATCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56
Consensus pattern (4 bp):
CTAT
Found at i:120869416 original size:13 final size:13
Alignment explanation
Indices: 120869398--120869422 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
120869388 TGATTTTGAA
120869398 ACTAACAATAAAT
1 ACTAACAATAAAT
120869411 ACTAACAATAAA
1 ACTAACAATAAA
120869423 CATTTGGTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.00, T:0.20
Consensus pattern (13 bp):
ACTAACAATAAAT
Found at i:120871466 original size:43 final size:42
Alignment explanation
Indices: 120871405--120871700 Score: 317
Period size: 43 Copynumber: 6.9 Consensus size: 42
120871395 GTTTATTTGA
* * *
120871405 AAAAATGCCGCTATAGAACATGACCTTTAGTGGTG-TTTCTCAC
1 AAAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTT-T-AC
* * *
120871448 AAAAACGCCGCTATAGAACATGACCTTTAACGACACTTTTAC
1 AAAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTAC
* * **
120871490 AACCAACGCCGTTATAGAACATGACCTTTAGCGGCG-TTTGTTG
1 AA-AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTT-TAC
* *
120871533 AGAAACACCGCTATAGAACATGACCTTTAGCGGCGCTTTTAC
1 AAAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTAC
* ** *
120871575 ATCAAACGCCGCTATAGAATGTTACCTTTAGCGGCGCTTTTACC
1 A-AAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTA-C
* *
120871619 ACAAACGCTGCTATAGAACATGACCTTTAGCGGCGCTTTTAC
1 AAAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTAC
* * * *
120871661 TACAAACGCCGCAATAGAACATTACCTTTAGCGGTGCTTT
1 -AAAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTT
120871701 AGTGAAAAAC
Statistics
Matches: 214, Mismatches: 32, Indels: 14
0.82 0.12 0.05
Matches are distributed among these distances:
42 40 0.19
43 169 0.79
44 5 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (42 bp):
AAAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTAC
Found at i:120871640 original size:128 final size:129
Alignment explanation
Indices: 120871412--120871700 Score: 354
Period size: 128 Copynumber: 2.2 Consensus size: 129
120871402 TGAAAAAATG
*
120871412 CCGCTATAGAACATGACCTTTAGTGGTG-TTTCTCACAAAAACGCCGCTATAGAACATGACCTTT
1 CCGCTATAGAACATGACCTTTAGCGGTGCTTTCTCACAAAAACGCCGCTATAGAACATGACCTTT
* * *
120871476 AACGACACTTTTACAACCAACGCCGTTATAGAACATGACCTTTAGCGGCG-TTTGT-TGAGAAAC
66 AACGACACTTTTACAACAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTT-TAT-ACAAAC
120871539 A
129 A
* * ** *
120871540 CCGCTATAGAACATGACCTTTAGCGGCGCTTT-T-ACATCAAACGCCGCTATAGAATGTTACCTT
1 CCGCTATAGAACATGACCTTTAGCGGTGCTTTCTCACA-AAAACGCCGCTATAGAACATGACCTT
* * * * *
120871603 TAGCGGCGCTTTTACCACAAACGCTGCTATAGAACATGACCTTTAGCGGCGCTTTTACTACAAAC
65 TAACGACACTTTTACAACAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTA-TACAAAC
*
120871668 G
129 A
* *
120871669 CCGCAATAGAACATTACCTTTAGCGGTGCTTT
1 CCGCTATAGAACATGACCTTTAGCGGTGCTTT
120871701 AGTGAAAAAC
Statistics
Matches: 138, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
127 3 0.02
128 94 0.68
129 40 0.29
130 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (129 bp):
CCGCTATAGAACATGACCTTTAGCGGTGCTTTCTCACAAAAACGCCGCTATAGAACATGACCTTT
AACGACACTTTTACAACAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTATACAAACA
Found at i:120871773 original size:43 final size:44
Alignment explanation
Indices: 120871726--120871831 Score: 126
Period size: 44 Copynumber: 2.5 Consensus size: 44
120871716 TAAAGGTCAC
* *
120871726 ATTCTATAGCGGC-ATTTTTCATGGAAGCGCCGCTAAAAGTCTT
1 ATTCTTTAGCGGCGATTTTTCATGGAAGCACCGCTAAAAGTCTT
* * * *
120871769 ATTCTTTAGTGGCGTTTTTTTATGGAAGCATCGCTAAAAGTCTT
1 ATTCTTTAGCGGCGATTTTTCATGGAAGCACCGCTAAAAGTCTT
* *
120871813 GTTCTTTAGCGACG-TTTTT
1 ATTCTTTAGCGGCGATTTTT
120871832 AAAAAACGCC
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 16 0.30
44 37 0.70
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.41
Consensus pattern (44 bp):
ATTCTTTAGCGGCGATTTTTCATGGAAGCACCGCTAAAAGTCTT
Found at i:120871804 original size:44 final size:44
Alignment explanation
Indices: 120871740--120871831 Score: 130
Period size: 44 Copynumber: 2.1 Consensus size: 44
120871730 TATAGCGGCA
* * *
120871740 TTTTTCATGGAAGCGCCGCTAAAAGTCTTATTCTTTAGTGGCGT
1 TTTTTCATGGAAGCACCGCTAAAAGTCTTATTCTTTAGCGACGT
* * *
120871784 TTTTTTATGGAAGCATCGCTAAAAGTCTTGTTCTTTAGCGACGT
1 TTTTTCATGGAAGCACCGCTAAAAGTCTTATTCTTTAGCGACGT
120871828 TTTT
1 TTTT
120871832 AAAAAACGCC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.42
Consensus pattern (44 bp):
TTTTTCATGGAAGCACCGCTAAAAGTCTTATTCTTTAGCGACGT
Found at i:120872194 original size:21 final size:21
Alignment explanation
Indices: 120872170--120872210 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
120872160 TTTTGCTCTG
*
120872170 CTCTGCTTCTCTCGCTGCTGT
1 CTCTGCTTCCCTCGCTGCTGT
*
120872191 CTCTGCTTCCCTCGTTGCTG
1 CTCTGCTTCCCTCGCTGCTG
120872211 CCTTCGCTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.00, C:0.39, G:0.20, T:0.41
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCTGT
Found at i:120873448 original size:2 final size:2
Alignment explanation
Indices: 120873393--120873429 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
120873383 GGTATTTAAA
*
120873393 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
120873430 ATAGTATTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:120874045 original size:15 final size:16
Alignment explanation
Indices: 120874012--120874047 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
120874002 TTTTCTTCTT
*
120874012 TTTTTTTGGGGTTAGG
1 TTTTTTTGGGGTTAAG
120874028 TTTTTTTGGGG-TAAG
1 TTTTTTTGGGGTTAAG
120874043 TTTTT
1 TTTTT
120874048 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.61
Consensus pattern (16 bp):
TTTTTTTGGGGTTAAG
Found at i:120874065 original size:17 final size:17
Alignment explanation
Indices: 120874043--120874078 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
120874033 TTGGGGTAAG
120874043 TTTTTCTTT-TTCTTTTT
1 TTTTTCTTTGTT-TTTTT
120874060 TTTTTCTTTGTTTTTTT
1 TTTTTCTTTGTTTTTTT
120874077 TT
1 TT
120874079 GGGTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.89
18 2 0.11
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (17 bp):
TTTTTCTTTGTTTTTTT
Found at i:120874073 original size:12 final size:11
Alignment explanation
Indices: 120874043--120874076 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
120874033 TTGGGGTAAG
120874043 TTTTTCTTTTTC
1 TTTTT-TTTTTC
120874055 TTTTTTTTTTC
1 TTTTTTTTTTC
120874066 TTTGTTTTTTT
1 TTT-TTTTTTT
120874077 TTGGGTTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:120879521 original size:9 final size:9
Alignment explanation
Indices: 120879507--120879637 Score: 156
Period size: 9 Copynumber: 14.6 Consensus size: 9
120879497 TGATATATAT
120879507 TTATGTAAG
1 TTATGTAAG
*
120879516 TTATGTAAA
1 TTATGTAAG
* *
120879525 TTACGTAGG
1 TTATGTAAG
120879534 TTATGTAAG
1 TTATGTAAG
120879543 TTATGTAAG
1 TTATGTAAG
*
120879552 TTATGATATG
1 TTATG-TAAG
* * *
120879562 ATAT-TTAT
1 TTATGTAAG
120879570 TTATGTAAG
1 TTATGTAAG
*
120879579 TTATGTAAA
1 TTATGTAAG
120879588 TTATGTAAG
1 TTATGTAAG
120879597 TTATGTAAG
1 TTATGTAAG
* *
120879606 TGATGTAAA
1 TTATGTAAG
120879615 TTATGTAAG
1 TTATGTAAG
120879624 TTATGTAAG
1 TTATGTAAG
120879633 TTATG
1 TTATG
120879638 ATATGGTATT
Statistics
Matches: 100, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
8 4 0.04
9 90 0.90
10 6 0.06
ACGTcount: A:0.34, C:0.01, G:0.20, T:0.45
Consensus pattern (9 bp):
TTATGTAAG
Found at i:120879538 original size:18 final size:18
Alignment explanation
Indices: 120879481--120879631 Score: 90
Period size: 18 Copynumber: 8.2 Consensus size: 18
120879471 AAGTTGACAA
*
120879481 TAAATTATGTAAGTTATG
1 TAAATTACGTAAGTTATG
*
120879499 ATATATATTTATGTAAGTTATG
1 -TA-A-A-TTACGTAAGTTATG
*
120879521 TAAATTACGTAGGTTATG
1 TAAATTACGTAAGTTATG
* *
120879539 TAAGTTATGTAAGTTATG
1 TAAATTACGTAAGTTATG
* * * *
120879557 -ATATGATA-TTTATTTATG
1 TAAAT--TACGTAAGTTATG
* * *
120879575 TAAGTTATGTAAATTATG
1 TAAATTACGTAAGTTATG
* * *
120879593 TAAGTTATGTAAGTGATG
1 TAAATTACGTAAGTTATG
*
120879611 TAAATTATGTAAGTTATG
1 TAAATTACGTAAGTTATG
120879629 TAA
1 TAA
120879632 GTTATGATAT
Statistics
Matches: 106, Mismatches: 19, Indels: 15
0.76 0.14 0.11
Matches are distributed among these distances:
17 4 0.04
18 76 0.72
19 7 0.07
20 2 0.02
21 3 0.03
22 14 0.13
ACGTcount: A:0.36, C:0.01, G:0.18, T:0.45
Consensus pattern (18 bp):
TAAATTACGTAAGTTATG
Found at i:120879579 original size:63 final size:63
Alignment explanation
Indices: 120879495--120879619 Score: 205
Period size: 63 Copynumber: 2.0 Consensus size: 63
120879485 TTATGTAAGT
* * *
120879495 TATGATATATATTTATGTAAGTTATGTAAATTACGTAGGTTATGTAAGTTATGTAAGTTATGA
1 TATGATATATATTTATGTAAGTTATGTAAATTACGTAAGTTATGTAAGTGATGTAAATTATGA
* *
120879558 TATGATATTTATTTATGTAAGTTATGTAAATTATGTAAGTTATGTAAGTGATGTAAATTATG
1 TATGATATATATTTATGTAAGTTATGTAAATTACGTAAGTTATGTAAGTGATGTAAATTATG
120879620 TAAGTTATGT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
63 57 1.00
ACGTcount: A:0.35, C:0.01, G:0.18, T:0.46
Consensus pattern (63 bp):
TATGATATATATTTATGTAAGTTATGTAAATTACGTAAGTTATGTAAGTGATGTAAATTATGA
Found at i:120882448 original size:7 final size:7
Alignment explanation
Indices: 120882432--120882520 Score: 83
Period size: 7 Copynumber: 12.6 Consensus size: 7
120882422 GTAACACTTA
*
120882432 AAACCTT
1 AAACCCT
120882439 AAACCCT
1 AAACCCT
120882446 AAACCCT
1 AAACCCT
120882453 AAACCCT
1 AAACCCT
*
120882460 AACCCCT
1 AAACCCT
*
120882467 AAACCAT
1 AAACCCT
120882474 ATAA-CCT
1 A-AACCCT
* *
120882481 TAGCCCT
1 AAACCCT
120882488 AAAACCCT
1 -AAACCCT
*
120882496 AAATCCT
1 AAACCCT
120882503 AAACCAC-
1 AAACC-CT
120882510 AAACCCT
1 AAACCCT
120882517 AAAC
1 AAAC
120882521 TATATAGCTA
Statistics
Matches: 66, Mismatches: 11, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
6 2 0.03
7 56 0.85
8 8 0.12
ACGTcount: A:0.44, C:0.38, G:0.01, T:0.17
Consensus pattern (7 bp):
AAACCCT
Found at i:120883342 original size:168 final size:167
Alignment explanation
Indices: 120883109--120883819 Score: 847
Period size: 168 Copynumber: 4.2 Consensus size: 167
120883099 AGGGCAAATG
* * * * * * * *
120883109 GGTATTGCAATTTTGCGGCGTTTTTTAAAGACGCCACTAAAATTTTTATTCCTTGTTCGGAAACG
1 GGTATTGCAAATTCGCGGCGTTTGTGAAAAACGCCACTAAAAATTTTATTCCCTGTTCTGAAACG
* * * * * *
120883174 TTTTCGTTTGAGGCAAATGGGTATTGCGATTTTGTGGCGTTTTCTAAAAACGCCACTAAAATTTT
66 ATGTCGTTTAAGGCAAAT-GGTATTGCAATTTTGCGGCGTTTTCTAAAAACGCCACTAAAAGTTT
*
120883239 AATGCTTTGTAACGAAACGACGCCGTTGGAGTCGAATT
130 AATGCTTTGTAATGAAACGACGCCGTTGGAGTCGAATT
* * * *
120883277 GGTATTGTAAATTCGCGGCGTTTGTGAAAAACGCTAGTAAAAATTTTATTCCCTATTCTGAAACG
1 GGTATTGCAAATTCGCGGCGTTTGTGAAAAACGCCACTAAAAATTTTATTCCCTGTTCTGAAACG
* * * **
120883342 -TAGTCGTTTGAGGCAAATGGTATTGTAATTTTGCGGCGTTTTTTAAAAAATTCCACTAAAAGTT
66 AT-GTCGTTTAAGGCAAATGGTATTGCAATTTTGCGGCGTTTTCT-AAAAACGCCACTAAAAGTT
* *
120883406 TAATGCTTTGTAATGAAACGACGCTGTTGGAGAC-AAGTT
129 TAATGCTTTGTAATGAAACGACGCCGTTGGAGTCGAA-TT
* * * *
120883445 GGTATGGCAAATTCGCGGCGTTTGTGAAAAACGCCACTAAAAATTTAATTCTCTGTTGTGAAACG
1 GGTATTGCAAATTCGCGGCGTTTGTGAAAAACGCCACTAAAAATTTTATTCCCTGTTCTGAAACG
** * *
120883510 ATGTCGTTTAAGGCAAATGGTATTGCAAACTTGCGGC-ATATCTTAAAAACGCCACTAAAAG-TT
66 ATGTCGTTTAAGGCAAATGGTATTGCAATTTTGCGGCGTTTTC-TAAAAACGCCACTAAAAGTTT
* *
120883573 AATGCTTTGTATTGAAACGACGCCGTTGGAGTCAAATT
130 AATGCTTTGTAATGAAACGACGCCGTTGGAGTCGAATT
* * * *
120883611 AGTATTGCAAATTTGCGGCGTTTGTGAAAAACGCCACTAAAAA-TTTAGTTCCATGTTGTGAAAC
1 GGTATTGCAAATTCGCGGCGTTTGTGAAAAACGCCACTAAAAATTTTA-TTCCCTGTTCTGAAAC
* * *
120883675 GACGTCCTTTAAGGCAAATGGTTATTGCAATTTTGCGGCGTTTTTTAAAAACGCCACTAAAAGTT
65 GATGTCGTTTAAGGCAAATGG-TATTGCAATTTTGCGGCGTTTTCTAAAAACGCCACTAAAAGTT
*
120883740 TAATGCTTTGTAATGAAATGACGCCGTTGGAGTCGAATTT
129 TAATGCTTTGTAATGAAACGACGCCGTTGGAGTCGAA-TT
** * ** ** *
120883780 ATTATTGCAAATTTGCAACGTTTGTGGGAAACGCCGCTAA
1 GGTATTGCAAATTCGCGGCGTTTGTGAAAAACGCCACTAA
120883820 TGCTGGACCT
Statistics
Matches: 467, Mismatches: 65, Indels: 21
0.84 0.12 0.04
Matches are distributed among these distances:
165 3 0.01
166 107 0.23
167 77 0.16
168 243 0.52
169 37 0.08
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (167 bp):
GGTATTGCAAATTCGCGGCGTTTGTGAAAAACGCCACTAAAAATTTTATTCCCTGTTCTGAAACG
ATGTCGTTTAAGGCAAATGGTATTGCAATTTTGCGGCGTTTTCTAAAAACGCCACTAAAAGTTTA
ATGCTTTGTAATGAAACGACGCCGTTGGAGTCGAATT
Found at i:120883654 original size:334 final size:336
Alignment explanation
Indices: 120883109--120883771 Score: 892
Period size: 334 Copynumber: 2.0 Consensus size: 336
120883099 AGGGCAAATG
* * * * * * * *
120883109 GGTATTGCAATTTTGCGGCGTTTTTTAAAGACGCCACTAAAATTTTTATTCCTTGTTCGGAAACG
1 GGTATGGCAAATTCGCGGCGTTTGTGAAAAACGCCACTAAAAATTTAATTCCTTGTTCGGAAACG
* * * * ** * * * *
120883174 TTTTCGTTTGAGGCAAATGGGTATTGCGATTTTGTGGCGTTTTCTAAAAACGCCACTAAAATTTT
66 ATGTCGTTTAAGGCAAATGGGTATTGCAAACTTGCGGCATTCTCTAAAAACGCCACTAAAATGTT
* * *
120883239 AATGCTTTGTAACGAAACGACGCCGTTGGAGTCGAATTGGTATTGTAAATTCGCGGCGTTTGTGA
131 AATGCTTTGTAACGAAACGACGCCGTTGGAGTCAAATTAGTATTGCAAATTCGCGGCGTTTGTGA
* * * * *
120883304 AAAACGCTAGTAAAAATTTTA-TTCCCTATTCTGAAACGTA-GTCGTTTGAGGCAAATGG-TATT
196 AAAACGCCACTAAAAA-TTTAGTTCCATATTCTGAAACG-ACGTCCTTTAAGGCAAATGGTTATT
* ** *
120883366 GTAATTTTGCGGCGTTTTTTAAAAAATTCCACTAAAAGTTTAATGCTTTGTAATGAAACGACGCT
259 GCAATTTTGCGGCGTTTTTT-AAAAACGCCACTAAAAGTTTAATGCTTTGTAATGAAACGACGCC
120883431 GTTGGAGACAAGTT
323 GTTGGAGACAAGTT
120883445 GGTATGGCAAATTCGCGGCGTTTGTGAAAAACGCCACTAAAAATTTAATT-CTCTGTT-GTGAAA
1 GGTATGGCAAATTCGCGGCGTTTGTGAAAAACGCCACTAAAAATTTAATTCCT-TGTTCG-GAAA
120883508 CGATGTCGTTTAAGGCAAAT-GGTATTGCAAACTTGCGGCATATCT-TAAAAACGCCACTAAAA-
64 CGATGTCGTTTAAGGCAAATGGGTATTGCAAACTTGCGGCAT-TCTCTAAAAACGCCACTAAAAT
** *
120883570 GTTAATGCTTTGTATTGAAACGACGCCGTTGGAGTCAAATTAGTATTGCAAATTTGCGGCGTTTG
128 GTTAATGCTTTGTAACGAAACGACGCCGTTGGAGTCAAATTAGTATTGCAAATTCGCGGCGTTTG
* *
120883635 TGAAAAACGCCACTAAAAATTTAGTTCCATGTTGTGAAACGACGTCCTTTAAGGCAAATGGTTAT
193 TGAAAAACGCCACTAAAAATTTAGTTCCATATTCTGAAACGACGTCCTTTAAGGCAAATGGTTAT
*
120883700 TGCAATTTTGCGGCGTTTTTTAAAAACGCCACTAAAAGTTTAATGCTTTGTAATGAAATGACGCC
258 TGCAATTTTGCGGCGTTTTTTAAAAACGCCACTAAAAGTTTAATGCTTTGTAATGAAACGACGCC
120883765 GTTGGAG
323 GTTGGAG
120883772 TCGAATTTAT
Statistics
Matches: 285, Mismatches: 36, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
333 5 0.02
334 152 0.53
335 59 0.21
336 69 0.24
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (336 bp):
GGTATGGCAAATTCGCGGCGTTTGTGAAAAACGCCACTAAAAATTTAATTCCTTGTTCGGAAACG
ATGTCGTTTAAGGCAAATGGGTATTGCAAACTTGCGGCATTCTCTAAAAACGCCACTAAAATGTT
AATGCTTTGTAACGAAACGACGCCGTTGGAGTCAAATTAGTATTGCAAATTCGCGGCGTTTGTGA
AAAACGCCACTAAAAATTTAGTTCCATATTCTGAAACGACGTCCTTTAAGGCAAATGGTTATTGC
AATTTTGCGGCGTTTTTTAAAAACGCCACTAAAAGTTTAATGCTTTGTAATGAAACGACGCCGTT
GGAGACAAGTT
Found at i:120883757 original size:84 final size:83
Alignment explanation
Indices: 120883101--120883762 Score: 499
Period size: 84 Copynumber: 7.9 Consensus size: 83
120883091 CATCGTCTAG
* * * * * * *
120883101 GGCAAATGGGTATTGCAATTTTGCGGCGTTTTTTAAAGACGCCACTAAAATTTTTATTCCTTGTT
1 GGCAAAT-GGTATTGCAAATTTGCGGCGTTTTTTAAAAACGCCACTAAAAATTTAATGCTTTGTA
** *** *
120883166 CGGAAACGTTTTCGTTTGA
65 ATGAAACGACGTCCTTTGA
* * * * *
120883185 GGCAAATGGGTATTGCGATTTTGTGGCGTTTTCTAAAAACGCCACTAAAATTTTAATGCTTTGTA
1 GGCAAAT-GGTATTGCAAATTTGCGGCGTTTTTTAAAAACGCCACTAAAAATTTAATGCTTTGTA
* *
120883250 ACGAAACGACG-CCGTTGGA
65 ATGAAACGACGTCC-TTTGA
* * * * * * * * * * ** * *
120883269 GTCGAATTGGTATTGTAAATTCGCGGCGTTTGTGAAAAACGCTAGTAAAAATTTTATTCCCTATT
1 GGC-AAATGGTATTGCAAATTTGCGGCGTTTTTTAAAAACGCCACTAAAAATTTAATGCTTTGTA
* *
120883334 CTGAAACGTA-GTCGTTTGA
65 ATGAAACG-ACGTCCTTTGA
* * ** *
120883353 GGCAAATGGTATTGTAATTTTGCGGCGTTTTTTAAAAAATTCCACTAAAAGTTTAATGCTTTGTA
1 GGCAAATGGTATTGCAAATTTGCGGCGTTTTTT-AAAAACGCCACTAAAAATTTAATGCTTTGTA
120883418 ATGAAACGACG--CTGTTGGA
65 ATGAAACGACGTCCT-TT-GA
* * * * * * * * *
120883437 GACAAGTTGGTATGGCAAATTCGCGGCGTTTGTGAAAAACGCCACTAAAAATTTAATTCTCTGTT
1 GGCAA-ATGGTATTGCAAATTTGCGGCGTTTTTTAAAAACGCCACTAAAAATTTAATGCTTTGTA
* * * *
120883502 GTGAAACGATGTCGTTTAA
65 ATGAAACGACGTCCTTTGA
* * * * * *
120883521 GGCAAATGGTATTGCAAACTTGCGGCATATCTTAAAAACGCCACT-AAAAGTTAATGCTTTGTAT
1 GGCAAATGGTATTGCAAATTTGCGGCGTTTTTTAAAAACGCCACTAAAAATTTAATGCTTTGTAA
*
120883585 TGAAACGACG-CCGTTGGA
66 TGAAACGACGTCC-TTTGA
* * * * * * ** *
120883603 GTCAAATTAGTATTGCAAATTTGCGGCGTTTGTGAAAAACGCCACTAAAAATTTAGTTCCATGTT
1 GGCAAA-TGGTATTGCAAATTTGCGGCGTTTTTTAAAAACGCCACTAAAAATTTAATGCTTTGTA
* *
120883668 GTGAAACGACGTCCTTTAA
65 ATGAAACGACGTCCTTTGA
* *
120883687 GGCAAATGGTTATTGCAATTTTGCGGCGTTTTTTAAAAACGCCACTAAAAGTTTAATGCTTTGTA
1 GGCAAATGG-TATTGCAAATTTGCGGCGTTTTTTAAAAACGCCACTAAAAATTTAATGCTTTGTA
*
120883752 ATGAAATGACG
65 ATGAAACGACG
120883763 CCGTTGGAGT
Statistics
Matches: 440, Mismatches: 122, Indels: 32
0.74 0.21 0.05
Matches are distributed among these distances:
81 1 0.00
82 32 0.07
83 96 0.22
84 280 0.64
85 30 0.07
86 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (83 bp):
GGCAAATGGTATTGCAAATTTGCGGCGTTTTTTAAAAACGCCACTAAAAATTTAATGCTTTGTAA
TGAAACGACGTCCTTTGA
Found at i:120884280 original size:22 final size:21
Alignment explanation
Indices: 120884251--120884306 Score: 76
Period size: 22 Copynumber: 2.6 Consensus size: 21
120884241 ATTTTTTGTC
* *
120884251 AAAAAATATTTTTTTAAATGT
1 AAAAAATATTTTTTCAAATCT
120884272 ATAAAAATATATTTTTCAAATCT
1 A-AAAAATAT-TTTTTCAAATCT
120884295 AAAAAATATTTT
1 AAAAAATATTTT
120884307 AAGAACTTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 4 0.13
22 16 0.52
23 11 0.35
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.45
Consensus pattern (21 bp):
AAAAAATATTTTTTCAAATCT
Found at i:120893146 original size:26 final size:26
Alignment explanation
Indices: 120893110--120893161 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
120893100 TAGCTCTAAC
*
120893110 CCATTAAGATTCTCTTATTGAAATGG
1 CCATTAAGATTCTCTTATGGAAATGG
*
120893136 CCATTAAGATTCTTTTATGGAAATGG
1 CCATTAAGATTCTCTTATGGAAATGG
120893162 GAACAAGTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.38
Consensus pattern (26 bp):
CCATTAAGATTCTCTTATGGAAATGG
Found at i:120900603 original size:28 final size:28
Alignment explanation
Indices: 120900473--120900600 Score: 82
Period size: 25 Copynumber: 4.9 Consensus size: 28
120900463 AAAAGTATAT
*
120900473 ATATAGTATTAAAA-ATAT--GTACATA
1 ATATAGTATTAAAATATATACATACATA
**
120900498 ATATAGCGTT-AAA-A-ATACATACATA
1 ATATAGTATTAAAATATATACATACATA
* * *
120900523 ATATAGTTATTGAAACATATACATAAGATA
1 ATATAG-TATTAAAATATATACAT-ACATA
120900553 ATAT-GTA--AATAATA-ATA-ATA-ATA
1 ATATAGTATTAA-AATATATACATACATA
120900576 ATATAGTATTAAAGATATATACATA
1 ATATAGTATTAAA-ATATATACATA
120900601 ATACATAAAA
Statistics
Matches: 81, Mismatches: 8, Indels: 25
0.71 0.07 0.22
Matches are distributed among these distances:
23 9 0.11
24 8 0.10
25 23 0.28
26 11 0.14
27 9 0.11
28 6 0.07
29 7 0.09
30 8 0.10
ACGTcount: A:0.53, C:0.05, G:0.08, T:0.34
Consensus pattern (28 bp):
ATATAGTATTAAAATATATACATACATA
Found at i:120900812 original size:22 final size:22
Alignment explanation
Indices: 120900765--120901070 Score: 105
Period size: 21 Copynumber: 14.5 Consensus size: 22
120900755 CATAAGATAG
* *
120900765 TATAAAAAATATATAACTAATGA
1 TATATAAAATATAT-ACTAATAA
*
120900788 TAT-TAAAATATATACGTCATAA
1 TATATAAAATATATAC-TAATAA
120900810 TATATAAAA-A-ATA-TAAT-A
1 TATATAAAATATATACTAATAA
* * *
120900828 TTTA-AAAATATGTACATAA-CA
1 TATATAAAATATATAC-TAATAA
120900849 TATATAAAAATATATACATAAT-A
1 TATAT-AAAATATATAC-TAATAA
*
120900872 TAGTATTAAAATATTTAC--ATAA
1 TA-TA-TAAAATATATACTAATAA
* *
120900894 TATAT-ACATAT-TA-GAA-AA
1 TATATAAAATATATACTAATAA
*
120900912 TA-A-AAAACGACTAT--TAATAA
1 TATATAAAA-TA-TATACTAATAA
*
120900932 TACTACATAAATATATAC--ATATA
1 TA-TATA-AAATATATACTAATA-A
120900955 TATATTAAAATATATAC--AT-A
1 TATA-TAAAATATATACTAATAA
* *
120900975 TATAAAAAATATACACTAAT-A
1 TATATAAAATATATACTAATAA
*
120900996 TATAATAATAATA-ATAATAATAA
1 TAT-ATAA-AATATATACTAATAA
*
120901019 TA-ATAATAATA-ATAATAATAA
1 TATATAA-AATATATACTAATAA
*
120901040 TA-ATAATAATA-ATAATAATAA
1 TATATAA-AATATATACTAATAA
120901061 TA-ATAAAATA
1 TATATAAAATA
120901071 CAAAAAGCAA
Statistics
Matches: 230, Mismatches: 20, Indels: 69
0.72 0.06 0.22
Matches are distributed among these distances:
17 7 0.03
18 12 0.05
19 24 0.10
20 15 0.07
21 68 0.30
22 50 0.22
23 38 0.17
24 15 0.07
25 1 0.00
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (22 bp):
TATATAAAATATATACTAATAA
Found at i:120900858 original size:24 final size:23
Alignment explanation
Indices: 120900822--120900899 Score: 97
Period size: 23 Copynumber: 3.4 Consensus size: 23
120900812 TATAAAAAAT
*
120900822 ATAATAT-T-TAAAAATATGTAC
1 ATAATATATATAAAAATATATAC
*
120900843 ATAACATATATAAAAATATATAC
1 ATAATATATATAAAAATATATAC
* *
120900866 ATAATATAGTATTAAAATATTTAC
1 ATAATATA-TATAAAAATATATAC
120900890 ATAATATATA
1 ATAATATATA
120900900 CATATTAGAA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
21 6 0.12
22 1 0.02
23 21 0.43
24 21 0.43
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.37
Consensus pattern (23 bp):
ATAATATATATAAAAATATATAC
Found at i:120900872 original size:49 final size:47
Alignment explanation
Indices: 120900808--120900899 Score: 121
Period size: 47 Copynumber: 1.9 Consensus size: 47
120900798 TATACGTCAT
120900808 AATATATAAAAAATATAATATTTAAAAATATGTACATAACATATATAAA
1 AATATATAAAAAATATAATA-TT-AAAATATGTACATAACATATATAAA
* * * * *
120900857 AATATATACATAATATAGTATTAAAATATTTACATAATATATA
1 AATATATAAAAAATATAATATTAAAATATGTACATAACATATA
120900900 CATATTAGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
47 19 0.50
48 2 0.05
49 17 0.45
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (47 bp):
AATATATAAAAAATATAATATTAAAATATGTACATAACATATATAAA
Found at i:120900997 original size:19 final size:17
Alignment explanation
Indices: 120900950--120900989 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
120900940 AAATATATAC
* *
120900950 ATATATATAT-TAAAAT
1 ATATACATATATAAAAA
120900966 ATATACATATATAAAAA
1 ATATACATATATAAAAA
120900983 ATATACA
1 ATATACA
120900990 CTAATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (17 bp):
ATATACATATATAAAAA
Found at i:120901005 original size:3 final size:3
Alignment explanation
Indices: 120900991--120901070 Score: 144
Period size: 3 Copynumber: 26.7 Consensus size: 3
120900981 AAATATACAC
120900991 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
120901037 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
120901071 CAAAAAGCAA
Statistics
Matches: 75, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.03
3 70 0.93
4 3 0.04
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:120901135 original size:10 final size:10
Alignment explanation
Indices: 120901120--120901162 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
120901110 AAAATAATAC
120901120 TATATATAAA
1 TATATATAAA
120901130 TATATATAAA
1 TATATATAAA
* *
120901140 TATACATATA
1 TATATATAAA
*
120901150 TA-ATAAAAA
1 TATATATAAA
120901159 TATA
1 TATA
120901163 CACTAGTATA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 6 0.22
10 21 0.78
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (10 bp):
TATATATAAA
Found at i:120901142 original size:16 final size:17
Alignment explanation
Indices: 120901123--120901156 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
120901113 ATAATACTAT
120901123 ATATAAATATAT-ATAA
1 ATATAAATATATAATAA
*
120901139 ATATACATATATAATAA
1 ATATAAATATATAATAA
120901156 A
1 A
120901157 AATATACACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (17 bp):
ATATAAATATATAATAA
Found at i:120901199 original size:136 final size:141
Alignment explanation
Indices: 120900976--120901484 Score: 401
Period size: 146 Copynumber: 3.7 Consensus size: 141
120900966 ATATACATAT
* * *
120900976 ATAAAAAATATACACTA-ATATATA-ATA-AT-AATAATA-ATA-ATAATAATAATAATA-A-TA
1 ATAAAAAATA-ATACTATATATAAATATATATAAAT-ATACATATATAATAAAAAT-ATACACTA
*
120901033 ATAATAATAATAATAATAATAATAATAAT-AATAAAATAC-AAAAAGCAAATATAATA-AGAT-A
63 ATAATAATAATAATAATAATAATAACAATAAATAAAATACAAAAAAGCAAATATAATATA-ATAA
* *
120901094 T-TA-GAATAAAGTA
127 TATACAAATAAAGCA
*
120901107 A-AAAAAATAATACTATATATAAATATATATAAATATACATATATAATAAAAATATACACTAGTA
1 ATAAAAAATAATACTATATATAAATATATATAAATATACATATATAATAAAAATATACACTAATA
* * * *
120901171 TATAATAATGATAATAATACTAACAATAACAATGAAATACAAAAAAGTAAATATAATATAATAAT
66 -ATAATAATAATAATAATAATAACAAT-A-AATAAAATACAAAAAAGCAAATATAATATAATAAT
120901236 GATACTAAATAAAGCA
128 -ATAC-AAATAAAGCA
* * ** * * * **
120901252 ATTAAAAATAGTGTTATTTATATATATATATATATATATGTATATAATAAAAATATACACTAATA
1 ATAAAAAATAATACTATATATAAATATATATAAATATACATATATAATAAAAATATACACTAATA
** * * ** *
120901317 ATAATAATAATAATACCAGA-AATAAT-AATGAAATACAAAAAAAATAAACATAATATAATAATA
66 ATAATAATAATAATAATA-ATAACAATAAATAAAATAC-AAAAAAGCAAATATAATATAATAATA
* *
120901380 TTAAAAATAAAGTA
129 -TACAAATAAAGCA
* * ** * * *
120901394 ATTAAAAATAGTGTTATATATAAGTATATAT--ATATACGTATATAATAAGAATATACA-TGAAT
1 ATAAAAAATAATACTATATATAAATATATATAAATATACATATATAATAAAAATATACACT-AAT
* * *
120901456 ATATAGTAATATTAATAATAATAATAATA
65 A-ATAATAATAATAATAATAATAACAATA
120901485 TTGATTAGAT
Statistics
Matches: 312, Mismatches: 39, Indels: 43
0.79 0.10 0.11
Matches are distributed among these distances:
129 5 0.02
130 14 0.04
131 4 0.01
132 5 0.02
133 9 0.03
134 11 0.04
135 4 0.01
136 23 0.07
139 10 0.03
140 47 0.15
141 23 0.07
142 48 0.15
143 27 0.09
145 29 0.09
146 53 0.17
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (141 bp):
ATAAAAAATAATACTATATATAAATATATATAAATATACATATATAATAAAAATATACACTAATA
ATAATAATAATAATAATAATAACAATAAATAAAATACAAAAAAGCAAATATAATATAATAATATA
CAAATAAAGCA
Found at i:120901348 original size:142 final size:137
Alignment explanation
Indices: 120901015--120901484 Score: 472
Period size: 140 Copynumber: 3.4 Consensus size: 137
120901005 AATAATAATA
* * * *
120901015 ATAATAATAATAATA-ATAATAATAATAATAATAATAATAATAATAATAATAAAATAC-AAAAAG
1 ATAATAAAAAT-ATACATAATAATAATAATAATAATACTAACAATAATAATGAAATACAAAAAAG
* * * * ** * *
120901078 CAAATATAATA-AGAT-AT-TAGAATAAAGTAA-AAAAAATAATACTATATATAAATATATATAA
65 TAAATATAATATA-ATAATATAAAATAAAGTAATTAAAAATAGTGTTAT-TATATATATATATAT
*
120901139 ATATACATAT
128 ATATACGTAT
* *
120901149 ATAATAAAAATATACACTAGTATATAATAATGATAATAATACTAACAATAACAATGAAATACAAA
1 ATAATAAAAATAT--AC-A-TA-ATAATAATAATAATAATACTAACAATAATAATGAAATACAAA
*
120901214 AAAGTAAATATAATATAATAATGATACTAAATAAAGCAATTAAAAATAGTGTTATTTATATATAT
61 AAAGTAAATATAATATAATAAT-ATA--AAATAAAGTAATTAAAAATAGTGTTA-TTATATATAT
*
120901279 ATATATATATATGTAT
122 ATATATATATACGTAT
*
120901295 ATAATAAAAATATACACTAATAATAATAATAATAATACCAGA-AATAATAATGAAATACAAAAAA
1 ATAATAAAAATATACA-TAATAATAATAATAATAATACTA-ACAATAATAATGAAATAC-AAAAA
* *
120901359 AATAAACATAATATAATAATATTAAAAATAAAGTAATTAAAAATAGTGTTA-TATATA-AGTATA
63 AGTAAATATAATATAATAATA-T-AAAATAAAGTAATTAAAAATAGTGTTATTATATATA-TATA
120901422 TATATATACGTAT
125 TATATATACGTAT
* * * * *
120901435 ATAATAAGAATATACATGAATATATAGTAATATTAATAATAATAATAATA
1 ATAATAAAAATATACAT-AATA-ATAATAATAATAATACTAACAATAATA
120901485 TTGATTAGAT
Statistics
Matches: 283, Mismatches: 30, Indels: 39
0.80 0.09 0.11
Matches are distributed among these distances:
133 2 0.01
134 10 0.04
135 1 0.00
137 1 0.00
138 2 0.01
139 36 0.13
140 60 0.21
141 24 0.08
142 60 0.21
143 30 0.11
144 3 0.01
145 9 0.03
146 44 0.16
147 1 0.00
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (137 bp):
ATAATAAAAATATACATAATAATAATAATAATAATACTAACAATAATAATGAAATACAAAAAAGT
AAATATAATATAATAATATAAAATAAAGTAATTAAAAATAGTGTTATTATATATATATATATATA
TACGTAT
Found at i:120901427 original size:14 final size:14
Alignment explanation
Indices: 120901408--120901437 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
120901398 AAAATAGTGT
120901408 TATATATAAGTATA
1 TATATATAAGTATA
*
120901422 TATATATACGTATA
1 TATATATAAGTATA
120901436 TA
1 TA
120901438 ATAAGAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (14 bp):
TATATATAAGTATA
Found at i:120902164 original size:2 final size:2
Alignment explanation
Indices: 120902159--120902194 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
120902149 TTACACACTT
120902159 TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
120902195 GTTTATATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:120906986 original size:31 final size:31
Alignment explanation
Indices: 120906938--120907001 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
120906928 ATTTGATCAC
* *
120906938 TGAATTATTTAAAAGTTTTCATTTAAGTTAT
1 TGAACTATTCAAAAGTTTTCATTTAAGTTAT
*
120906969 TGAACTATTCAAAAGTTTTTATTTAAGTTAT
1 TGAACTATTCAAAAGTTTTCATTTAAGTTAT
120907000 TG
1 TG
120907002 TCTATTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.50
Consensus pattern (31 bp):
TGAACTATTCAAAAGTTTTCATTTAAGTTAT
Found at i:120907011 original size:27 final size:29
Alignment explanation
Indices: 120906949--120907015 Score: 84
Period size: 31 Copynumber: 2.3 Consensus size: 29
120906939 GAATTATTTA
*
120906949 AAAGTTTTCATTTAAGTTATTGAACTATT
1 AAAGTTTTTATTTAAGTTATTGAACTATT
*
120906978 CAAAAGTTTTTATTTAAGTTATTG-TCTATT
1 --AAAGTTTTTATTTAAGTTATTGAACTATT
120907008 -AAGTTTTT
1 AAAGTTTTT
120907016 TTCTTAAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 8 0.24
30 5 0.15
31 21 0.62
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.52
Consensus pattern (29 bp):
AAAGTTTTTATTTAAGTTATTGAACTATT
Found at i:120908171 original size:25 final size:25
Alignment explanation
Indices: 120908117--120908171 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
120908107 AAAAATTATA
* * *
120908117 TTTTTCATCTTTTTATTTTTCTATC
1 TTTTTAATCTTTTCATTTTTCTAAC
*
120908142 CTTTTAATC-TTTCATTTTTCTTAAC
1 TTTTTAATCTTTTCATTTTTC-TAAC
120908167 TTTTT
1 TTTTT
120908172 TTTCACTCTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
24 10 0.42
25 14 0.58
ACGTcount: A:0.15, C:0.16, G:0.00, T:0.69
Consensus pattern (25 bp):
TTTTTAATCTTTTCATTTTTCTAAC
Found at i:120910121 original size:24 final size:24
Alignment explanation
Indices: 120910094--120910140 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
120910084 TTCTTGGTTT
120910094 TTTTTTTGGGGGGTTAGGTTTTTC
1 TTTTTTTGGGGGGTTAGGTTTTTC
***
120910118 TTTTTTTTTTGGGTTAGGTTTTT
1 TTTTTTTGGGGGGTTAGGTTTTT
120910141 TTGGGGGTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.04, C:0.02, G:0.28, T:0.66
Consensus pattern (24 bp):
TTTTTTTGGGGGGTTAGGTTTTTC
Found at i:120911070 original size:76 final size:76
Alignment explanation
Indices: 120910791--120911577 Score: 601
Period size: 72 Copynumber: 10.4 Consensus size: 76
120910781 AAAAGACATA
* * * * *
120910791 AAAATAGAAATTGAAAACAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGCGTGATCCGAGGCTCAACTCACCTCTCGCAATATGAGT
120910856 TGATTTTTGAATCTTG
66 TGA-TTTT---T-TTG
** *** ** *
120910872 AAAAGCAGATTTTGAAAATACCTC-GATATGTGA-CTTAAGGCTCAACTCACCT-TCGTAATATG
1 AAAA-CAGAAATTGAAAATACCTCAG-CGCGTGATC-CGAGGCTCAACTCACCTCTCGCAATATG
***
120910934 AGTTGATTTTTGAA
63 AGTTGATTTTTTTG
* *** * * * *
120910948 AAAAAATTGAAAAAAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATG
1 AAAACA--G-AAATTGAAAATACCTCAGCGCGTGATCCGAGGCTCAACTCACCTCTCGCAATATG
120911013 AGTTGATTTTTTTG
63 AGTTGATTTTTTTG
* * *
120911027 AAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG-
1 AAAACAGAAATTGAAAATACCTCAGCGCGTGATCCGAGGCTCAACTCACCTCTCGCAATATGAGT
*
120911091 TCATTTTTTTG
66 TGATTTTTTTG
* * * *
120911102 -AAA-AGAAATTGAAAAACGAAATTGAAAATACTC-GCGTGTGA-CCTGAGGCTCAACTCGCCGC
1 AAAACAGAAATTG----A--AAA-T----A-CCTCAGCGCGTGATCC-GAGGCTCAACTCACCTC
120911163 TCG--A-ATGAGTTGATTTTTTTG
53 TCGCAATATGAGTTGATTTTTTTG
* *
120911184 -AAATAGAAATT-AAAATTACCTCA--GCGTG-TCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAATTGAAAA-TACCTCAGCGCGTGATCCGAGGCTCAACTCACCTCTCGCAATATGAG
120911244 TTGATTTTTTTTTG
65 TTGA--TTTTTTTG
* ** *
120911258 AAAGCAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGCGTGATCCGAGGCTCAACTCACCTCTCGCAATATGAGT
120911323 TGA--TTTTTG
66 TGATTTTTTTG
* * ** *
120911332 AAAACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCATTTCTCGTAATATGAG
1 AAAACAGAAATTGAAAATACCTCAGCGCGTGATC-CGAGGCTCAACTCACCTCTCGCAATATGAG
*
120911394 TTGA--ATTTTG
65 TTGATTTTTTTG
* * *
120911404 AAAACAGAAATTGAAATTACCTCA--GCATG-TCCGAGGCTCAACTCACCTCTTGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGCGTGATCCGAGGCTCAACTCACCTCTCGCAATATGAGT
120911466 TGATTTTTTTTG
66 TGA-TTTTTTTG
* * **
120911478 AAAAACAGAAATTGAAAATACCTCA--GCATG-TCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 -AAAACAGAAATTGAAAATACCTCAGCGCGTGATC-CGAGGCTCAACTCACCTCTCGCAATATGA
*
120911540 GTTGA--ATTTTG
64 GTTGATTTTTTTG
*
120911551 AAAACAGAAATTGAAATTACCTCAGCG
1 AAAACAGAAATTGAAAATACCTCAGCG
120911578 TGTCTTGAGG
Statistics
Matches: 583, Mismatches: 79, Indels: 95
0.77 0.10 0.13
Matches are distributed among these distances:
69 18 0.03
70 5 0.01
71 34 0.06
72 100 0.17
73 13 0.02
74 46 0.08
75 57 0.10
76 90 0.15
77 7 0.01
78 67 0.11
79 30 0.05
80 5 0.01
81 26 0.04
82 48 0.08
83 9 0.02
84 25 0.04
85 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (76 bp):
AAAACAGAAATTGAAAATACCTCAGCGCGTGATCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTG
Found at i:120911207 original size:156 final size:152
Alignment explanation
Indices: 120910829--120911541 Score: 473
Period size: 147 Copynumber: 4.7 Consensus size: 152
120910819 GTGAGCCAAG
* **
120910829 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAATCTTGAAAAGCAGATTTTGAAAATACC
1 GCTCAACTCACCGCTCG-AATATGAGTTGA-TTTT---T-TTGAAAA-CAGAAATTGAAAATACC
** * * * * *
120910894 TCGATATGTGACTTAAGGCTCAACTCACCT-TCGTAATATGAGT-TGATTTTTGAAAAAAAATTG
59 TC-A-GCGTGGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTAT-TTTTTTGAAAAGAAATTG
* *
120910957 -AAAAAAAAAAATACCTCAGTGTGTGATCTGAA
120 AAAAAAAAAAAATACCTCAGCGTGTGACCTGAA
* *
120910989 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATAGCTCAGCG
1 GCTCAACTCACCGCTCG-AATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCA--G
120911054 CGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCATTTTTTTGAAAAGAAATTGAAAAAC
63 CGTG-GCCAAGGCTCAACTCACCTCTCGCAATATGAGT-ATTTTTTTGAAAAGAAATTGAAAAA-
*
120911119 GAAATTGAAAATA-CTC-GCGTGTGACCTGAG
125 -AAA---AAAATACCTCAGCGTGTGACCTGAA
* *
120911149 GCTCAACTCGCCGCTCG-A-ATGAGTTGATTTTTTTG-AAATAGAAATT-AAAATTACCTCAGCG
1 GCTCAACTCACCGCTCGAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAA-TACCTCAGCG
* **
120911210 TGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGCAGAAATTG----
65 TGGCCAAGGCTCAACTCACCTCTCGCAATATGAG-T-A--TTTTTTTGAAA--AGAAATTGAAAA
* *
120911271 ----AAAATACCTCAGCATGTGAACC-GAG
124 AAAAAAAATACCTCAGCGTGTG-ACCTGAA
* *
120911296 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAAAATACCTCAACG
1 GCTCAACTCACCGCTCG-AATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCG
* ** ** * **
120911359 TGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGT-TGAATTTTGAAAACAGAAATTG------
65 TGGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTAT-TTTTTTG-AAA-AGAAATTGAAAAAA
* * *
120911417 --AAATTACCTCAGCATGT--CC-GAG
126 AAAAAATACCTCAGCGTGTGACCTGAA
* *
120911439 GCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTGAAAAACAGAAATTGAAAATACCTCAG
1 GCTCAACTCACCGCTCG-AATATGAGTTGA-TTTTTTTG-AAAACAGAAATTGAAAATACCTCAG
* * ** **
120911504 CATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
63 CGTGGC-CAAGGCTCAACTCACCTCTCGCAATATGAGT
120911542 TGAATTTTGA
Statistics
Matches: 484, Mismatches: 37, Indels: 77
0.81 0.06 0.13
Matches are distributed among these distances:
143 34 0.07
145 7 0.01
146 39 0.08
147 87 0.18
148 9 0.02
149 25 0.05
150 40 0.08
153 30 0.06
154 42 0.09
155 24 0.05
156 44 0.09
157 22 0.05
158 9 0.02
159 7 0.01
160 56 0.12
161 3 0.01
162 6 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30
Consensus pattern (152 bp):
GCTCAACTCACCGCTCGAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGT
GGCCAAGGCTCAACTCACCTCTCGCAATATGAGTATTTTTTTGAAAAGAAATTGAAAAAAAAAAA
ATACCTCAGCGTGTGACCTGAA
Found at i:120911524 original size:147 final size:145
Alignment explanation
Indices: 120911146--120911596 Score: 621
Period size: 147 Copynumber: 3.1 Consensus size: 145
120911136 CGTGTGACCT
* * *
120911146 GAGGCTCAACTCGCCGCTCG--A-ATGAGTTGATTTTTTTG-AAATAGAAATT-AAAATTACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAA-TACCTC
** * *
120911206 AGCGTGTC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGCAGAAATT
65 AGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA----ATTTTGAAAACAGAAATT
*
120911270 GAAAATACCTCAGCATGTGAACC
126 GAAATTACCTCAGCATGT---CC
120911293 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAAAATACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCA
* *
120911356 ACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTGAATTTTGAAAACAGAAATTGAAAT
66 GCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAT
120911421 TACCTCAGCATGTCC
131 TACCTCAGCATGTCC
*
120911436 GAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTGAAAAACAGAAATTGAAAATACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTG-AAAACAGAAATTGAAAATACCT
*
120911501 CAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAA
64 CAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAA
* *
120911566 ATTACCTCAGCGTGTCTT
129 ATTACCTCAGCATGTC-C
120911584 GAGGCTCAACTCA
1 GAGGCTCAACTCA
120911597 TTTTGAACAG
Statistics
Matches: 277, Mismatches: 16, Indels: 21
0.88 0.05 0.07
Matches are distributed among these distances:
143 34 0.12
146 39 0.14
147 117 0.42
148 19 0.07
149 24 0.09
150 44 0.16
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31
Consensus pattern (145 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAT
TACCTCAGCATGTCC
Found at i:120911619 original size:49 final size:49
Alignment explanation
Indices: 120911553--120911648 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
120911543 GAATTTTGAA
*
120911553 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
120911602 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
120911649 CTCGCAATAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:120911827 original size:12 final size:13
Alignment explanation
Indices: 120911799--120911831 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
120911789 GAGTTGATTC
120911799 TTGAACAACATAAA
1 TTGAA-AACATAAA
120911813 TTGAAAACA-AAA
1 TTGAAAACATAAA
120911825 TTGAAAA
1 TTGAAAA
120911832 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 10 0.53
13 4 0.21
14 5 0.26
ACGTcount: A:0.61, C:0.09, G:0.09, T:0.21
Consensus pattern (13 bp):
TTGAAAACATAAA
Found at i:120911911 original size:138 final size:138
Alignment explanation
Indices: 120911672--120912016 Score: 597
Period size: 139 Copynumber: 2.5 Consensus size: 138
120911662 TTGAATTTTT
120911672 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
120911736 TGAGTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAA-CCACCTCTCGCAATATGAGTTGATTCT
62 TGAGTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTT-ATTCT
120911800 TGAACAACATAAA
126 TGAACAACATAAA
120911813 TTGAAAACA-AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
120911877 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTATTCTTGAA
66 -TGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTATTCTTGAA
*
120911942 CAACGTAAA
130 CAACATAAA
120911951 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
120912016 T
66 T
120912017 TGAAATTAAA
Statistics
Matches: 198, Mismatches: 2, Indels: 11
0.94 0.01 0.05
Matches are distributed among these distances:
136 3 0.02
137 32 0.16
138 60 0.30
139 94 0.47
140 3 0.02
141 6 0.03
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.25
Consensus pattern (138 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
TGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTATTCTTGAAC
AACATAAA
Found at i:120912082 original size:72 final size:71
Alignment explanation
Indices: 120911948--120912113 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
120911938 TGAACAACGT
* * * *
120911948 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
120912013 GAGTTG
66 GAGTTG
*
120912019 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
120912084 TGAGTTG
65 TGAGTTG
**
120912091 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
120912114 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:120912208 original size:122 final size:124
Alignment explanation
Indices: 120911988--120912234 Score: 392
Period size: 122 Copynumber: 2.0 Consensus size: 124
120911978 GCGTGACCTG
* *
120911988 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
120912053 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAATTAAA
* * * *
120912113 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* *
120912175 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
120912234 A
1 A
120912235 ATACCTCAAC
Statistics
Matches: 114, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
121 16 0.14
122 63 0.55
123 7 0.06
124 1 0.01
125 27 0.24
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.24
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:120912256 original size:71 final size:70
Alignment explanation
Indices: 120912113--120912287 Score: 228
Period size: 71 Copynumber: 2.5 Consensus size: 70
120912103 AAAAATTAAA
* * * * * *
120912113 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
120912177 CCCCG
66 CCCCG
*
120912182 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
* **
120912247 GTCTTG
65 GCCCCG
120912253 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTT
120912288 CCCTTGAAAA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.06
71 61 0.66
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:120920563 original size:12 final size:12
Alignment explanation
Indices: 120920543--120920578 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
120920533 TGGGATATGC
*
120920543 AATGTATGAATG
1 AATGCATGAATG
120920555 AATGCATGAATG
1 AATGCATGAATG
120920567 AATGCATGAATG
1 AATGCATGAATG
120920579 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:120922239 original size:19 final size:19
Alignment explanation
Indices: 120922217--120922291 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 19
120922207 TAATAATAAT
120922217 ATAAAATAATAATATGTAC
1 ATAAAATAATAATATGTAC
*
120922236 ATAAAATACATATATATATATGC
1 ATAAAATA-ATA-ATATGTA--C
*
120922259 ATATAATAA-AAGTATGTA-
1 ATAAAATAATAA-TATGTAC
120922277 ATAATAATAATAATA
1 ATAA-AATAATAATA
120922292 ATAATATCTA
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
18 3 0.07
19 15 0.33
20 6 0.13
21 12 0.27
22 1 0.02
23 8 0.18
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.33
Consensus pattern (19 bp):
ATAAAATAATAATATGTAC
Found at i:120923275 original size:16 final size:16
Alignment explanation
Indices: 120923254--120923286 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
120923244 TTGGTTGAGT
120923254 TTTGATATAATCGGGC
1 TTTGATATAATCGGGC
120923270 TTTGATATAATCGGGC
1 TTTGATATAATCGGGC
120923286 T
1 T
120923287 CGGGCAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (16 bp):
TTTGATATAATCGGGC
Found at i:120924413 original size:17 final size:19
Alignment explanation
Indices: 120924334--120924406 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
120924324 ATAATCTTCA
120924334 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
120924353 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
120924372 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
120924389 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
120924407 AGATATGATT
Statistics
Matches: 52, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.33
19 35 0.67
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:120924432 original size:22 final size:22
Alignment explanation
Indices: 120924334--120924429 Score: 88
Period size: 19 Copynumber: 4.8 Consensus size: 22
120924324 ATAATCTTCA
120924334 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
120924353 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
120924372 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
120924389 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
120924411 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
120924430 GATTTAATTT
Statistics
Matches: 69, Mismatches: 2, Indels: 8
0.87 0.03 0.10
Matches are distributed among these distances:
17 17 0.25
19 32 0.46
22 8 0.12
23 12 0.17
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:120934200 original size:78 final size:78
Alignment explanation
Indices: 120934091--120934461 Score: 552
Period size: 78 Copynumber: 4.8 Consensus size: 78
120934081 CGAAGAAATA
* * ** *
120934091 GATTT-GCATCTCCATATTTGACGAAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
120934155 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
120934168 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATACAGCAGATCTGACCTTCATT-AA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
120934232 GTAGATCCAAGAT
66 GCAGATCCAAGAT
* *
120934245 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
120934309 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
120934323 GATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
120934387 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
120934401 GATTTGGTATTTCTATATTAGACGGCGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
120934462 GTGTTTACAT
Statistics
Matches: 271, Mismatches: 19, Indels: 7
0.91 0.06 0.02
Matches are distributed among these distances:
76 1 0.00
77 76 0.28
78 193 0.71
79 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:120934379 original size:155 final size:156
Alignment explanation
Indices: 120934091--120934461 Score: 552
Period size: 155 Copynumber: 2.4 Consensus size: 156
120934081 CGAAGAAATA
* * **
120934091 GATTT-GCATCTCCATATTTGACGAAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAAA
1 GATTTGGCATCTCTATATTAGACGGCGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAAA
* * * *
120934155 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATACAGCAGATCT
66 GCAGATCCAAGATGATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGACACAACAGATCT
*
120934220 GACCTTCATT-AAGTAGATCCAAGAT
131 GACCTTCATTGAAGCAGATCCAAGAT
* * * *
120934245 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGCGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTAA
*
120934309 AGCAGATCCAAGATGATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGACATAACAGAT-
65 AGCAGATCCAAGATGATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGACACAACAGATC
120934373 TGGACCTTCATTGAAGCAGATCCAAGAT
130 T-GACCTTCATTGAAGCAGATCCAAGAT
* *
120934401 GATTTGGTATTTCTATATTAGACGGCGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTATATTAGACGGCGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
120934462 GTGTTTACAT
Statistics
Matches: 194, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
154 7 0.04
155 118 0.61
156 68 0.35
157 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.26
Consensus pattern (156 bp):
GATTTGGCATCTCTATATTAGACGGCGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAAA
GCAGATCCAAGATGATTTGGCATCTCTATATTAGACAGGGAGCAGATCGAAGACACAACAGATCT
GACCTTCATTGAAGCAGATCCAAGAT
Found at i:120934599 original size:44 final size:45
Alignment explanation
Indices: 120934475--120934674 Score: 240
Period size: 45 Copynumber: 4.5 Consensus size: 45
120934465 TTTACATCGA
* * * *
120934475 AGCAGATCCAAGATGACAGATTTGGCATATCTATATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
120934520 AGCAAATCGGAGATAACAGATTTTGCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
120934565 AGCAGATTGAAGA-AGCAGATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * ** *
120934609 AGCAGATTGAAAATAACAGATTTGGTGTCTCTGTATTAGACGGAG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
120934654 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCGAAGATAACAGAT
120934675 ATCGCCTTCC
Statistics
Matches: 133, Mismatches: 21, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
44 40 0.30
45 93 0.70
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (45 bp):
AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:120934605 original size:89 final size:90
Alignment explanation
Indices: 120934475--120934674 Score: 251
Period size: 89 Copynumber: 2.2 Consensus size: 90
120934465 TTTACATCGA
* * *
120934475 AGCAGATCCAAGAT-GACAGATTTGGCATATCTATATTAGACGGGGAGCAAATCGGAGATAACAG
1 AGCAGATCAAAGATAG-CAGATTTGGCATATCTATATTAGACGGGGAGCAAATCGAAAATAACAG
* *
120934539 ATTTTGCATCTCTGTATTAGACGGGG
65 ATTTGGCATCTCTGTATTAGACGGAG
** * * * * *
120934565 AGCAGATTGAAGA-AGCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATTGAAAATAACAGA
1 AGCAGATCAAAGATAGCAGATTTGGCATATCTATATTAGACGGGGAGCAAATCGAAAATAACAGA
**
120934629 TTTGGTGTCTCTGTATTAGACGGAG
66 TTTGGCATCTCTGTATTAGACGGAG
120934654 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCAAAGATAGCAGAT
120934675 ATCGCCTTCC
Statistics
Matches: 93, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
89 74 0.80
90 19 0.20
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (90 bp):
AGCAGATCAAAGATAGCAGATTTGGCATATCTATATTAGACGGGGAGCAAATCGAAAATAACAGA
TTTGGCATCTCTGTATTAGACGGAG
Found at i:120935046 original size:14 final size:15
Alignment explanation
Indices: 120935027--120935064 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
120935017 AATCTTCAAT
120935027 GATATG-CAATCTTA
1 GATATGACAATCTTA
120935041 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
120935058 GATATGA
1 GATATGA
120935065 TTACAATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 1 0.05
17 14 0.67
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:120935087 original size:21 final size:18
Alignment explanation
Indices: 120935033--120935077 Score: 83
Period size: 17 Copynumber: 2.6 Consensus size: 18
120935023 CAATGATATG
120935033 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
120935050 CAATCTTAGATATGATTA
1 CAATCTTAGATATGATTA
120935068 CAATCTTAGA
1 CAATCTTAGA
120935078 AGATATGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 15 0.56
18 12 0.44
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Done.