Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 388 of 433
Found at i:120935390 original size:17 final size:17
Alignment explanation
Indices: 120935366--120935400 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
120935356 TGTTTCCCTG
*
120935366 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
120935384 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
120935401 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:120936799 original size:31 final size:31
Alignment explanation
Indices: 120936759--120936822 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
120936749 ATTTTATTAT
* *
120936759 TGAATTATTCGAAAA-TGTTCATTTAAGTTAC
1 TGAACTATTC-AAAAGTGTTCATTTAAGTCAC
* *
120936790 TGAACTATTCAAAAGTTTTTATTTAAGTCAC
1 TGAACTATTCAAAAGTGTTCATTTAAGTCAC
120936821 TG
1 TG
120936823 GCTATTGAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 4 0.14
31 24 0.86
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.42
Consensus pattern (31 bp):
TGAACTATTCAAAAGTGTTCATTTAAGTCAC
Found at i:120938072 original size:19 final size:16
Alignment explanation
Indices: 120938006--120938058 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
120937996 TCAATATATT
**
120938006 TATAAAATTTTCAAAA
1 TATAAAATTTAAAAAA
* * *
120938022 TTTATATTTTAAAAAA
1 TATAAAATTTAAAAAA
120938038 TATAAAATTATAAAAAA
1 TATAAAATT-TAAAAAA
120938055 TATA
1 TATA
120938059 TAAAAAATTT
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
16 17 0.61
17 11 0.39
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (16 bp):
TATAAAATTTAAAAAA
Found at i:120938082 original size:28 final size:27
Alignment explanation
Indices: 120938031--120938088 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
120938021 ATTTATATTT
120938031 TAAAAAATATAAAATTATAAAAAATATA
1 TAAAAAATATAAAATTATAAAAAATA-A
* * **
120938059 TAAAAAATTTAAAATTTTGTAAAATAA
1 TAAAAAATATAAAATTATAAAAAATAA
120938086 TAA
1 TAA
120938089 TTTTGGGACC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 4 0.15
28 22 0.85
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (27 bp):
TAAAAAATATAAAATTATAAAAAATAA
Found at i:120938717 original size:12 final size:12
Alignment explanation
Indices: 120938700--120938724 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
120938690 ATGTGTGTTC
120938700 GAGTGCGTTAAA
1 GAGTGCGTTAAA
120938712 GAGTGCGTTAAA
1 GAGTGCGTTAAA
120938724 G
1 G
120938725 CGTATTATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.36, T:0.24
Consensus pattern (12 bp):
GAGTGCGTTAAA
Found at i:120939351 original size:31 final size:31
Alignment explanation
Indices: 120939316--120939381 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
120939306 CAATTTGATC
* *
120939316 ATTGAATTATTCGAAAGTTTTCATTTAAGTT
1 ATTGAACTATTCAAAAGTTTTCATTTAAGTT
*
120939347 ATTGAACTATTCAAAAGTTTTTATTTAAGTT
1 ATTGAACTATTCAAAAGTTTTCATTTAAGTT
120939378 ATTG
1 ATTG
120939382 TCTACTAAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.48
Consensus pattern (31 bp):
ATTGAACTATTCAAAAGTTTTCATTTAAGTT
Found at i:120942285 original size:19 final size:19
Alignment explanation
Indices: 120942261--120942318 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 19
120942251 CCCCACACTT
120942261 AATATCACAGTATAAACAA
1 AATATCACAGTATAAACAA
* *
120942280 AATAT--C---AT-AAGAT
1 AATATCACAGTATAAACAA
120942293 AATATCACAGTATAAACAA
1 AATATCACAGTATAAACAA
120942312 AATATCA
1 AATATCA
120942319 TAAGAGAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 12
0.64 0.09 0.27
Matches are distributed among these distances:
13 8 0.28
14 2 0.07
15 1 0.03
17 1 0.03
18 2 0.07
19 15 0.52
ACGTcount: A:0.57, C:0.14, G:0.05, T:0.24
Consensus pattern (19 bp):
AATATCACAGTATAAACAA
Found at i:120942296 original size:32 final size:32
Alignment explanation
Indices: 120942260--120942323 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
120942250 TCCCCACACT
120942260 TAATATCACAGTATAAACAAAATATCATAAGA
1 TAATATCACAGTATAAACAAAATATCATAAGA
120942292 TAATATCACAGTATAAACAAAATATCATAAGA
1 TAATATCACAGTATAAACAAAATATCATAAGA
120942324 GAAGGAGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.56, C:0.12, G:0.06, T:0.25
Consensus pattern (32 bp):
TAATATCACAGTATAAACAAAATATCATAAGA
Found at i:120945761 original size:38 final size:38
Alignment explanation
Indices: 120945664--120945766 Score: 127
Period size: 38 Copynumber: 2.7 Consensus size: 38
120945654 GGCTTAAAGA
* ** * * *
120945664 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTAGTGCTGGTATTATATCAGAGATAAAT
120945702 CCCGCAGGCTTCA-TGCTGGTATTATATCAGAGATAAAT
1 CCCGCAGGCTT-AGTGCTGGTATTATATCAGAGATAAAT
*
120945740 CCCGCAGGCCTAGTGCTGGTATTATAT
1 CCCGCAGGCTTAGTGCTGGTATTATAT
120945767 TCGGGCCTTC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
37 1 0.02
38 55 0.98
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.28
Consensus pattern (38 bp):
CCCGCAGGCTTAGTGCTGGTATTATATCAGAGATAAAT
Found at i:120946146 original size:43 final size:43
Alignment explanation
Indices: 120945764--120946131 Score: 601
Period size: 43 Copynumber: 8.6 Consensus size: 43
120945754 GCTGGTATTA
* *
120945764 TATTCGGGCCTTCATGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
120945807 TATTCGGGCCTTCGTGCCTAGCAGGTTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
120945850 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
120945893 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATACCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * * *
120945936 TATTTGGGCCTTCGTGCCTAGCAGACTTCATGCCGGTGATGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
120945979 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
120946022 TATTCGGGCCTTCGTGCCTAGGAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
120946065 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
120946108 TATTCGGGCCTTCGTGCCTAGCAG
1 TATTCGGGCCTTCGTGCCTAGCAG
120946132 ACGTAATGCC
Statistics
Matches: 304, Mismatches: 21, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 304 1.00
ACGTcount: A:0.13, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:120948529 original size:15 final size:15
Alignment explanation
Indices: 120948491--120948543 Score: 58
Period size: 15 Copynumber: 3.6 Consensus size: 15
120948481 GAAAATGAAA
120948491 AAAATAATAAGAAA--
1 AAAATAA-AAGAAACT
*
120948505 AATAAT-AAAGATACT
1 AA-AATAAAAGAAACT
120948520 AAAATAAAAGAAACT
1 AAAATAAAAGAAACT
120948535 AAAATAAAA
1 AAAATAAAA
120948544 TAATAAGCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
13 5 0.15
14 6 0.18
15 22 0.67
ACGTcount: A:0.74, C:0.04, G:0.06, T:0.17
Consensus pattern (15 bp):
AAAATAAAAGAAACT
Found at i:120948563 original size:16 final size:16
Alignment explanation
Indices: 120948542--120948572 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
120948532 ACTAAAATAA
*
120948542 AATAATAAGCAAAGAG
1 AATAATAAGAAAAGAG
120948558 AATAATAAGAAAAGA
1 AATAATAAGAAAAGA
120948573 AGCAATTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.03, G:0.16, T:0.13
Consensus pattern (16 bp):
AATAATAAGAAAAGAG
Found at i:120952427 original size:16 final size:17
Alignment explanation
Indices: 120952406--120952438 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
120952396 TAAAAATTAA
120952406 GCTAAA-AATAAAAATG
1 GCTAAATAATAAAAATG
120952422 GCTAAATTAATAAAAAT
1 GCTAAA-TAATAAAAAT
120952439 AAAGTATTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.61, C:0.06, G:0.09, T:0.24
Consensus pattern (17 bp):
GCTAAATAATAAAAATG
Found at i:120954856 original size:11 final size:11
Alignment explanation
Indices: 120954842--120954886 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
120954832 AGATAAATAT
120954842 TATTTTATTAA
1 TATTTTATTAA
*
120954853 TATTTTAATAATA
1 TATTTT-ATTA-A
*
120954866 TATTTTATTAT
1 TATTTTATTAA
120954877 TATTTTATTA
1 TATTTTATTA
120954887 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:120954869 original size:24 final size:24
Alignment explanation
Indices: 120954837--120954892 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
120954827 TAATTAGATA
120954837 AATATTATTTTATTAATATTTTAAT
1 AATA-TATTTTATTAATATTTTAAT
* *
120954862 AATATATTTTATTATTATTTTATT
1 AATATATTTTATTAATATTTTAAT
*
120954886 AGTATAT
1 AATATAT
120954893 AAAGAAAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 24 0.86
25 4 0.14
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
AATATATTTTATTAATATTTTAAT
Found at i:120954956 original size:8 final size:8
Alignment explanation
Indices: 120954943--120954975 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
120954933 GCACTAACGT
120954943 GAGAGAAA
1 GAGAGAAA
120954951 GAGAG-AA
1 GAGAGAAA
120954958 GAGAGAAA
1 GAGAGAAA
120954966 GAGAGAAA
1 GAGAGAAA
120954974 GA
1 GA
120954976 AATTTTACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.29
8 17 0.71
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (8 bp):
GAGAGAAA
Found at i:120954963 original size:15 final size:15
Alignment explanation
Indices: 120954943--120954972 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
120954933 GCACTAACGT
120954943 GAGAGAAAGAGAGAA
1 GAGAGAAAGAGAGAA
120954958 GAGAGAAAGAGAGAA
1 GAGAGAAAGAGAGAA
120954973 AGAAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (15 bp):
GAGAGAAAGAGAGAA
Found at i:120957046 original size:46 final size:46
Alignment explanation
Indices: 120956932--120957156 Score: 294
Period size: 46 Copynumber: 4.9 Consensus size: 46
120956922 GTGTGCTCTC
* *
120956932 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* *
120956978 T--TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
*
120957022 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* * * * *
120957068 TGACATGAAAAGAATAAGACTATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* * * *
120957114 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
120957157 TCATGTCAAA
Statistics
Matches: 161, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
44 42 0.26
45 1 0.01
46 118 0.73
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:120958277 original size:56 final size:56
Alignment explanation
Indices: 120958186--120958322 Score: 168
Period size: 56 Copynumber: 2.4 Consensus size: 56
120958176 GACCATGGCA
* ** * * *
120958186 TCAGTATATGTGTGCGAGTAAGACCACGTTTTATACGTTGTCATCGGTATGTGA-T
1 TCAGAATATGTGTGCGAGTAAGACCACACTTTATACATTGGCATCGATATGTGACT
* * *
120958241 TCGGAAATATGTATGCGAGTAGGACCACACTTTATACATTGGCATCGATATGTGACT
1 TCAG-AATATGTGTGCGAGTAAGACCACACTTTATACATTGGCATCGATATGTGACT
*
120958298 TCAGTATATGTGTGCGAGTAAGACC
1 TCAGAATATGTGTGCGAGTAAGACC
120958323 TTGTCTGTGA
Statistics
Matches: 67, Mismatches: 13, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
55 3 0.04
56 60 0.90
57 4 0.06
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (56 bp):
TCAGAATATGTGTGCGAGTAAGACCACACTTTATACATTGGCATCGATATGTGACT
Found at i:120960047 original size:23 final size:23
Alignment explanation
Indices: 120960021--120960126 Score: 108
Period size: 23 Copynumber: 4.7 Consensus size: 23
120960011 AGCCCTCCCC
120960021 AAAAAAAACCTAACCAAAAAAAA
1 AAAAAAAACCTAACCAAAAAAAA
*
120960044 AAAAAAAACCTAACCCAAAAAAA
1 AAAAAAAACCTAACCAAAAAAAA
* ***
120960067 AGAAAAAACCTAACCCCCAAAAA
1 AAAAAAAACCTAACCAAAAAAAA
***
120960090 AAACCTAACCTAA--AAAACAAAA
1 AAAAAAAACCTAACCAAAA-AAAA
*
120960112 AAGAAAAACCTAACC
1 AAAAAAAACCTAACC
120960127 CTAGCCACCT
Statistics
Matches: 65, Mismatches: 15, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
21 1 0.02
22 13 0.20
23 51 0.78
ACGTcount: A:0.69, C:0.24, G:0.02, T:0.06
Consensus pattern (23 bp):
AAAAAAAACCTAACCAAAAAAAA
Found at i:120960778 original size:24 final size:24
Alignment explanation
Indices: 120960717--120960784 Score: 59
Period size: 27 Copynumber: 2.8 Consensus size: 24
120960707 TTTAAATACC
120960717 ATATT-GTGTATATATTATTATTA
1 ATATTAGTGTATATATTATTATTA
* * *
120960740 CAAATTATTACTATAGTATTATTATT-
1 -ATATTAGT-GTATA-TATTATTATTA
*
120960766 ATATTAGTGTATATTTTAT
1 ATATTAGTGTATATATTAT
120960785 GTACATATGT
Statistics
Matches: 34, Mismatches: 7, Indels: 7
0.71 0.15 0.15
Matches are distributed among these distances:
23 5 0.15
24 8 0.24
25 7 0.21
26 4 0.12
27 10 0.29
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.54
Consensus pattern (24 bp):
ATATTAGTGTATATATTATTATTA
Found at i:120962677 original size:12 final size:12
Alignment explanation
Indices: 120962660--120962695 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
120962650 ATTCATTTGA
120962660 CATTCATGCATT
1 CATTCATGCATT
120962672 CATTCATGCATT
1 CATTCATGCATT
*
120962684 CATTCATACATT
1 CATTCATGCATT
120962696 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:120963251 original size:18 final size:17
Alignment explanation
Indices: 120963224--120963266 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
120963214 ATGAAATTTT
*
120963224 AATTAGTATTATGAGATA
1 AATTATTATTATGAGA-A
*
120963242 AATTATTATTATTAGAA
1 AATTATTATTATGAGAA
*
120963259 AAATATTA
1 AATTATTA
120963267 CTGTATGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (17 bp):
AATTATTATTATGAGAA
Found at i:120965083 original size:28 final size:28
Alignment explanation
Indices: 120965051--120965119 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
120965041 GCGTAGATCA
120965051 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
120965079 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
120965107 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
120965120 GGGTTTAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
26 3 0.08
27 8 0.21
28 28 0.72
ACGTcount: A:0.45, C:0.28, G:0.07, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:120974306 original size:72 final size:69
Alignment explanation
Indices: 120974203--120974372 Score: 216
Period size: 72 Copynumber: 2.4 Consensus size: 69
120974193 TTTTCAAGGG
* * *
120974203 AAATCAACTCATATTGCGAG-AGATGAATTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAATTGAGCCTCAAGACACGCTGAGGTATTTTT-AGTTTA
120974267 TGTTTT
64 TGTTTT
* **
120974273 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAATTGAGCCTCAAGACACGCTGAGGTATTTTTAGTTTA
120974338 TGTTTT
64 TGTTTT
** *
120974344 AAATTGACTCATATTGCGAGAGGTGAATT
1 AAATCAACTCATATTGCGAGAAGTGAATT
120974373 AAGCTTTTAA
Statistics
Matches: 87, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
69 25 0.29
71 10 0.11
72 50 0.57
73 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAATTGAGCCTCAAGACACGCTGAGGTATTTTTAGTTTATG
TTTT
Found at i:120974646 original size:140 final size:140
Alignment explanation
Indices: 120974475--120974745 Score: 515
Period size: 140 Copynumber: 1.9 Consensus size: 140
120974465 TTAATTTCAA
120974475 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
120974540 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
120974605 TCAAAATCAG
131 TCAAAATCAG
* *
120974615 CTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCGATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
120974680 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
120974745 T
131 T
120974746 AATTTCTACT
Statistics
Matches: 128, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
140 128 1.00
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:120974747 original size:14 final size:14
Alignment explanation
Indices: 120974728--120974759 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
120974718 GGGTTGAACC
120974728 TTTTAATTTCTACT
1 TTTTAATTTCTACT
120974742 TTTTAATTTCTACT
1 TTTTAATTTCTACT
120974756 TTTT
1 TTTT
120974760 CAAAATCAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.19, C:0.12, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTAATTTCTACT
Found at i:120974874 original size:80 final size:72
Alignment explanation
Indices: 120974746--120974977 Score: 234
Period size: 72 Copynumber: 3.1 Consensus size: 72
120974736 TCTACTTTTT
* * ** *
120974746 AATTTCTACTTTTTCAAAA-TCAGCTCATATTGCGA-AAGGTGAGTTGAGCCTCGTTTCACATGC
1 AATTTCTA--TTTTCAAAATTCAACTCATATTGCGAGAA-ATGAGTTGAGCCTC--AACACACGC
*
120974809 TGAGATATTTTC
61 TGAGATAATTTC
*
120974821 AATTTCTATCTTTCAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 AATTTCTAT-TTTC-----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAACACACG
* *
120974886 TTGAGGTAATTTC
60 CTGAGATAATTTC
* * * *
120974899 AATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACGTTGAGG
1 AATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAACACACGCTGAGA
120974964 TAATTTC
66 TAATTTC
120974971 AATTTCT
1 AATTTCT
120974978 GTGAGAAATG
Statistics
Matches: 139, Mismatches: 10, Indels: 19
0.83 0.06 0.11
Matches are distributed among these distances:
72 65 0.47
73 1 0.01
74 4 0.03
75 8 0.06
77 4 0.03
78 23 0.17
79 4 0.03
80 28 0.20
81 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (72 bp):
AATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAACACACGCTGAGA
TAATTTC
Found at i:120974938 original size:72 final size:72
Alignment explanation
Indices: 120974840--120974977 Score: 267
Period size: 72 Copynumber: 1.9 Consensus size: 72
120974830 CTTTCAAAAA
120974840 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
120974905 TATTTTC
66 TATTTTC
*
120974912 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
120974977 T
66 T
120974978 GTGAGAAATG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (72 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
TATTTTC
Found at i:120974991 original size:49 final size:49
Alignment explanation
Indices: 120974931--120975028 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 49
120974921 CTCATATTGC
* *
120974931 GAGAAATGAGTTGAGCCTCAAGATACGTTGAGGTAATTTCAATTTCTGT
1 GAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGT
* *
120974980 GAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGT
1 GAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGT
120975029 TTTTCAAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (49 bp):
GAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGT
Found at i:120975087 original size:124 final size:121
Alignment explanation
Indices: 120974859--120975103 Score: 382
Period size: 124 Copynumber: 2.0 Consensus size: 121
120974849 CTCATATTGC
* *
120974859 GAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTC
1 GAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTCAAAAATCAACTC
* *
120974924 ATATTGCGAGAAATGAGTTGAGCCTCAAGATACGTTGAGGTAATTTCAATTTCTGT
66 ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGT
* * *
120974980 GAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAA
1 GAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCT-ATTTTC--AAAAATCAA
* *
120975045 CTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
63 CTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGT
120975104 TGACAAAAAA
Statistics
Matches: 112, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
121 44 0.39
122 5 0.04
124 63 0.56
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (121 bp):
GAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTCAAAAATCAACTC
ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGT
Found at i:120975103 original size:75 final size:75
Alignment explanation
Indices: 120974980--120975186 Score: 272
Period size: 75 Copynumber: 2.7 Consensus size: 75
120974970 CAATTTCTGT
* * *
120974980 GAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAA
1 GAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAA
120975045 CTCATATTGC
66 CTCATATTGC
* **
120975055 GAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGACAAAAAAATCAA
1 GAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAA
* *
120975119 CTCGTATTGT
66 CTCATATTGC
* * * **
120975129 GAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCATTTTTCAA
1 GAGAAGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
120975187 TTTCTGCCTT
Statistics
Matches: 113, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
74 42 0.37
75 44 0.39
76 22 0.19
77 5 0.04
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (75 bp):
GAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAA
CTCATATTGC
Found at i:120975176 original size:76 final size:75
Alignment explanation
Indices: 120974987--120975176 Score: 265
Period size: 74 Copynumber: 2.5 Consensus size: 75
120974977 TGTGAGAAAT
* * **
120974987 GAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATAT
1 GAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTGACAAAAAAATCAACTCATAT
*
120975052 TGCGAGAAGT
66 TGCGAGAAGC
* *
120975062 GAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGACAAAAAAATCAACTCGTAT
1 GAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTGACAAAAAAATCAACTCATAT
* *
120975126 TGTGAGAGGC
66 TGCGAGAAGC
*
120975136 GAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTC
1 GAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATTTC
120975177 CATTTTTCAA
Statistics
Matches: 102, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
74 42 0.41
75 38 0.37
76 22 0.22
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (75 bp):
GAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTGACAAAAAAATCAACTCATAT
TGCGAGAAGC
Found at i:120975248 original size:94 final size:89
Alignment explanation
Indices: 120975107--120975323 Score: 229
Period size: 94 Copynumber: 2.4 Consensus size: 89
120975097 TTTCTGTTGA
* * * * * *
120975107 CAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAACCTCAGGTCACACACCGAGGTATTTTCA
** * * **
120975172 ATTTCCATTTTTCAATTTCTGCCTTT
66 AAATCCACTTTTCAAGTTAAG--TTT
* *
120975198 CAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAACCTCCA-GTCACATATCGAGGTATT
1 C---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAACCT-CAGGTCACACACCGAGGTATT
**
120975262 TTCAAAATCTGCTTTTCAAGTTAAGTTT
62 TTCAAAATCCACTTTTCAAGTTAAGTTT
120975290 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
120975324 GAGCCTTGGC
Statistics
Matches: 106, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
89 33 0.31
91 1 0.01
92 4 0.04
94 66 0.62
95 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (89 bp):
CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAACCTCAGGTCACACACCGAGGTATTTTCA
AAATCCACTTTTCAAGTTAAGTTT
Found at i:120975368 original size:89 final size:85
Alignment explanation
Indices: 120975107--120975774 Score: 419
Period size: 89 Copynumber: 7.8 Consensus size: 85
120975097 TTTCTGTTGA
* * * * *
120975107 CAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGC-C-GAGGTATTTT
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGG-CTCACGCACTGAGGTATTTT
*
120975170 CAATTTCCATT-TTTCAATTTCTGCCTTT
64 CAAATT-C-TTATTTCAA--T-TG--TTT
* * ** **
120975198 CAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAACCTCCAG-TCACATA-TCGAGGTAT
1 C---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCACT-GAGGTAT
*
120975261 TTTCAAAATCTGCT-TTTCAAGTTAAGTTT
61 TTTCAAATTCT--TATTTCAA-TT--GTTT
*
120975290 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCACTGAGCTATTTTC-
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCACTGAGGTATTTTCA
* *
120975354 -A----T-TTTCTA-TCTTT
66 AATTCTTATTTCAATTGTTT
* * **
120975367 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCACATACTGAGGTATTTT-
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACGCACTGAGGTATTTTC
*
120975430 ---TTC-AATTT-ATATT-TTT
65 AAATTCTTATTTCA-ATTGTTT
* * * * *
120975446 CAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCA--CATGTCGAGGTATTTT
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCA-CT-GAGGTATTTT
* * *
120975509 CAAAATCTGTTTTTCAAATTCTATT
64 CAAATTCT-TATTTC-AATTGT-TT
*** * * *
120975534 TTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTACTGAGCTATTTTC-
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCACTGAGGTATTTTCA
120975598 AATTCTTATTT---TT-TTT
66 AATTCTTATTTCAATTGTTT
* ** **
120975614 CAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACATA-TCGAGGTATTT
1 CAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCACT-GAGGTATTT
*
120975677 TCAAAATCTGCT-TTTCAAGTTAAGTTT
63 TCAAATTCT--TATTTCAA-TT--GTTT
*
120975704 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCACTGAGCTATTTTCA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCACTGAGGTATTTTCA
*
120975769 ATTTCT
66 AATTCT
120975775 GTTTTTAATG
Statistics
Matches: 459, Mismatches: 69, Indels: 100
0.73 0.11 0.16
Matches are distributed among these distances:
76 3 0.01
77 58 0.13
78 1 0.00
79 57 0.12
80 11 0.02
81 53 0.12
82 8 0.02
83 5 0.01
84 1 0.00
85 3 0.01
86 7 0.02
87 10 0.02
88 54 0.12
89 104 0.23
90 14 0.03
91 1 0.00
92 9 0.02
93 2 0.00
94 58 0.13
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.34
Consensus pattern (85 bp):
CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCACTGAGGTATTTTCA
AATTCTTATTTCAATTGTTT
Found at i:120975469 original size:245 final size:248
Alignment explanation
Indices: 120975202--120975677 Score: 705
Period size: 245 Copynumber: 1.9 Consensus size: 248
120975192 GCCTTTCAAA
*
120975202 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAACCTCCAGTCACATATCGAGGTATTTTCAA
1 AAAAAAATCAACTCACATTGCGAGAGGTGAGTTAAACCTCCAGTCACATATCGAGGTATTTTCAA
* *
120975267 AATCTGCTTTTCAAGTT-AAGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
66 AATCTGCTTTTCAAATTCAAGTTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT
120975331 GGCTCACGCACTGAGCTATTTTC-ATT-TT-CTATCTTTCAAAAAAA-TCAACTCATATTGCGAG
129 GGCTCACGCACTGAGCTATTTTCAATTCTTACTATCTTTCAAAAAAATTCAACTCATATTGCGAG
* *
120975392 AGGTGAGTTG-AGCTTCAGATCACATA-CTGAGGTATTTTTTCAATTTATATTTTTC
194 AGGTGAGTTGAACCTCCAG-TCACATATC-GAGGTATTTTTTCAATTTATATTTTTC
* * * ** *
120975447 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAA
1 AAAAAAATCAACTCACATTGCGAGAGGTGAGTTAAACCTCCAGTCACATATCGAGGTATTTTCAA
* * *
120975512 AATCTGTTTTTCAAATTCTATTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGG
66 AATCTGCTTTTCAAATTCAAGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGG
* * * *
120975577 CTCACGTACTGAGCTATTTTCAATTCTTATTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAG
131 CTCACGCACTGAGCTATTTTCAATTCTTACTATCTTTCAAAAAAATTCAACTCATATTGCGAGAG
120975642 GTGAGTTGAACCTCCAGTCACATATCGAGGTATTTT
196 GTGAGTTGAACCTCCAGTCACATATCGAGGTATTTT
120975678 CAAAATCTGC
Statistics
Matches: 206, Mismatches: 18, Indels: 11
0.88 0.08 0.05
Matches are distributed among these distances:
244 59 0.29
245 76 0.37
246 7 0.03
247 13 0.06
248 44 0.21
249 7 0.03
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (248 bp):
AAAAAAATCAACTCACATTGCGAGAGGTGAGTTAAACCTCCAGTCACATATCGAGGTATTTTCAA
AATCTGCTTTTCAAATTCAAGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGG
CTCACGCACTGAGCTATTTTCAATTCTTACTATCTTTCAAAAAAATTCAACTCATATTGCGAGAG
GTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTTTCAATTTATATTTTTC
Found at i:120975480 original size:79 final size:76
Alignment explanation
Indices: 120975287--120975772 Score: 285
Period size: 79 Copynumber: 5.9 Consensus size: 76
120975277 TCAAGTTAAG
* * *
120975287 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCACTGAGCTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTAGATCACACACTGAGCTATTT
* *
120975352 TCATTTTCTATC
65 TCAATTTATATC
* *
120975364 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACATACTGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT-AGATCACACACTGAGCTA--T
*
120975429 TTTCAATTTATATT
63 TTTCAATTTATATC
* * ** * ** *
120975443 TTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACA-TGTCGAGGTATT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTAGATCACACACT-GAGCTATT
*
120975507 TTCAAAATCTGTTTTTCAAATTC
64 TTC--AA------TTT-ATA-TC
*** * * * **
120975530 TATTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTACTGAGCTATT
1 T-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTAGATCACACACTGAGCTATT
* *
120975595 TTCAATTCTTATTTTT
64 TTCAA-T-TTA-TATC
* * * *
120975611 TTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACATA-TCGAGGTA
1 TTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTG-AGCT-TAGATCACACACT-GAGCTA
**
120975674 TTTTCAAAATCTGCTTTTCAAGTTAAG
62 TTTTC--AA------TTT--A--TATC
* * *
120975701 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCACTGAGCTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTAGATCACACACTGAGCTATTT
120975766 TCAATTT
65 TCAATTT
120975773 CTGTTTTTAA
Statistics
Matches: 324, Mismatches: 49, Indels: 68
0.73 0.11 0.15
Matches are distributed among these distances:
76 3 0.01
77 58 0.18
78 1 0.00
79 64 0.20
80 10 0.03
81 52 0.16
82 4 0.01
83 2 0.01
85 3 0.01
86 4 0.01
87 6 0.02
88 57 0.18
89 46 0.14
90 14 0.04
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (76 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTAGATCACACACTGAGCTATTTT
CAATTTATATC
Found at i:120975595 original size:88 final size:85
Alignment explanation
Indices: 120975449--120975829 Score: 303
Period size: 88 Copynumber: 4.4 Consensus size: 85
120975439 TATTTTTCAA
* * * *
120975449 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGT-C-GAGGTATTTTCAA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCAC--GTACTGAGCTATTTTCAA
120975512 AATCTGTTTTTCAAATTCTATTTTC
64 AATCTGTTTTT--AATT-TATTTTC
* *
120975537 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTACTGAGCTATTTTC-AAT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACGTACTGAGCTATTTTCAAAA
* ***
120975601 TCT-TATTT--TTT-TTCAA
66 TCTGTTTTTAATTTATTTTC
* * * * *
120975617 AAAAATTCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACATA-TCGAGGTATTTTCA
1 AAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCT-CGGCTCACGTACT-GAGCTATTTTCA
* * *
120975680 AAATCTGCTTTTCAAGTTAAGTTTC
63 AAATCTG-TTTTTAA-TTTATTTTC
* * *
120975705 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCACTGAGCTATTTTCAA
1 --AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACGTACTGAGCTATTTTCAA
** * *
120975770 TTTCTGTTTTTAATGTCTGTTTTT
64 AATCTGTTTTTAAT-T-TATTTTC
* * * *
120975794 AAAGAGTCAATTCATATTGCGAAAAATGAGTTGAGC
1 AAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGC
120975830 TCAGGATCAC
Statistics
Matches: 232, Mismatches: 42, Indels: 38
0.74 0.13 0.12
Matches are distributed among these distances:
80 8 0.03
81 47 0.20
82 8 0.03
84 3 0.01
86 6 0.03
87 12 0.05
88 87 0.38
89 55 0.24
90 6 0.03
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (85 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACGTACTGAGCTATTTTCAAAA
TCTGTTTTTAATTTATTTTC
Found at i:120975676 original size:81 final size:84
Alignment explanation
Indices: 120975364--120975769 Score: 297
Period size: 88 Copynumber: 4.8 Consensus size: 84
120975354 ATTTTCTATC
* * * *
120975364 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACATACTGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGCTCACATACTGAGCTA--T
*
120975429 TTTC-AA--T--TTATATT--
64 TTTCAAATCTGCTTTTATTAG
* * * * * * *
120975443 TTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACAT-GTCGAGGTATT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGCTCACATACT-GAGCTATT
* *
120975507 TTCAAAATCTGTTTTTCAAATTCTAT
65 TTC-AAATCTGCTTTT---A-T-TAG
* * ** *
120975533 TTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTACTGAGCTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGCTCACATACTGAGCTATTT
*
120975596 TC-AAT-T-CTTATT-TT-T
66 TCAAATCTGCTT-TTATTAG
*
120975611 TTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACATA-TCGAGGTA
1 TTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAACCT-CAGCTCACATACT-GAGCTA
120975674 TTTTCAAAATCTGCTTTTCAAGTTAAG
63 TTTTC-AAATCTGCTTTT--A-TT-AG
* ** **
120975701 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCACTGAGCTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGCTCACATACTGAGCTATTT
120975766 TCAA
66 TCAA
120975770 TTTCTGTTTT
Statistics
Matches: 266, Mismatches: 28, Indels: 57
0.76 0.08 0.16
Matches are distributed among these distances:
77 5 0.02
78 6 0.02
79 57 0.21
80 7 0.03
81 47 0.18
82 1 0.00
83 6 0.02
84 5 0.02
85 6 0.02
86 4 0.02
87 1 0.00
88 58 0.22
89 47 0.18
90 16 0.06
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (84 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGCTCACATACTGAGCTATTT
TCAAATCTGCTTTTATTAG
Found at i:120975769 original size:170 final size:168
Alignment explanation
Indices: 120975364--120975772 Score: 576
Period size: 169 Copynumber: 2.4 Consensus size: 168
120975354 ATTTTCTATC
* * * *
120975364 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCACATACTGAGGTATT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACGTACTGAGCTA--
* * **
120975428 TTTTCAA-TTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTC
63 TTTTCAATTTTATATTTTTCAAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAACCTCCAGTC
* * * *
120975492 ACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCTAT
128 ACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTCAAG
*
120975533 TTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTACTGAGCTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTACTGAGCTATTT
* *
120975596 TCAATTCTTATTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAGTC
66 TCAATT-TTA-TATTTTTCAAAAAAA-TCAACTCACATTGCGAGAGGTGAGTTGAACCTCCAGTC
*
120975661 ACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTT-AAG
128 ACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTCAAG
*
120975701 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCACTGAGCTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTACTGAGCTATTT
120975766 TCAATTT
66 TCAATTT
120975773 CTGTTTTTAA
Statistics
Matches: 215, Mismatches: 18, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
165 7 0.03
166 1 0.00
167 50 0.23
168 22 0.10
169 72 0.33
170 63 0.29
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (168 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTACTGAGCTATTT
TCAATTTTATATTTTTCAAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAACCTCCAGTCACA
TATCGAGGTATTTTCAAAATCTGCTTTTCAAATTCAAG
Found at i:120976462 original size:20 final size:20
Alignment explanation
Indices: 120976437--120976527 Score: 85
Period size: 20 Copynumber: 4.3 Consensus size: 20
120976427 AGCCCTCCCC
*
120976437 AAAAAAACCTAACCGAAAAA
1 AAAAAAACCTAACCCAAAAA
120976457 AAAAAAACCTAACCCAAAAAAAA
1 AAAAAAACCTAACCC---AAAAA
***
120976480 AGAAAAAACCTAACCC-CCCA
1 A-AAAAAACCTAACCCAAAAA
*
120976500 AAAAAAACCTAACCTAAAAA
1 AAAAAAACCTAACCCAAAAA
120976520 AACAAAAA
1 AA-AAAAA
120976528 AGAAAAACCT
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
19 13 0.23
20 19 0.33
21 5 0.09
23 6 0.11
24 14 0.25
ACGTcount: A:0.68, C:0.24, G:0.02, T:0.05
Consensus pattern (20 bp):
AAAAAAACCTAACCCAAAAA
Found at i:120976504 original size:24 final size:23
Alignment explanation
Indices: 120976437--120976495 Score: 79
Period size: 24 Copynumber: 2.7 Consensus size: 23
120976427 AGCCCTCCCC
*
120976437 AAAAAAACCTAA-CC--GAAAAA
1 AAAAAAACCTAACCCAAAAAAAA
120976457 AAAAAAACCTAACCCAAAAAAAA
1 AAAAAAACCTAACCCAAAAAAAA
120976480 AGAAAAAACCTAACCC
1 A-AAAAAACCTAACCC
120976496 CCCAAAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
20 12 0.35
21 2 0.06
23 6 0.18
24 14 0.41
ACGTcount: A:0.68, C:0.24, G:0.03, T:0.05
Consensus pattern (23 bp):
AAAAAAACCTAACCCAAAAAAAA
Found at i:120983997 original size:56 final size:56
Alignment explanation
Indices: 120983900--120984007 Score: 150
Period size: 56 Copynumber: 1.9 Consensus size: 56
120983890 ACCATAGCAT
* *
120983900 CGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTGACACGTTGGCATCGATATGTGACTC
120983956 CGATATATGTGTGCGAGTAAGACC-CTGTCTGTGACA-G-TGGCATCGATATGTG
1 CGATATATGTGTGCGAGTAAGACCAC-GT-T-TGACACGTTGGCATCGATATGTG
120984008 GTTACATGTA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
55 1 0.02
56 41 0.87
57 2 0.04
58 3 0.06
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACGTTTGACACGTTGGCATCGATATGTGACTC
Found at i:120986686 original size:5 final size:5
Alignment explanation
Indices: 120986676--120986701 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
120986666 CAATTTTAAA
120986676 TTCTT TTCTT TTCTT TTCTT TTCTT T
1 TTCTT TTCTT TTCTT TTCTT TTCTT T
120986702 CATTGTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTCTT
Found at i:120986845 original size:24 final size:26
Alignment explanation
Indices: 120986798--120986853 Score: 89
Period size: 24 Copynumber: 2.2 Consensus size: 26
120986788 AAAAAATTAT
120986798 ATTTTTCGTCTTTCTATTTTTCTATC
1 ATTTTTCGTCTTTCTATTTTTCTATC
120986824 ATTTTT-GTCTTTC-ATTTTTCTATC
1 ATTTTTCGTCTTTCTATTTTTCTATC
*
120986848 TTTTTT
1 ATTTTT
120986854 TTCACTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 16 0.55
25 7 0.24
26 6 0.21
ACGTcount: A:0.11, C:0.16, G:0.04, T:0.70
Consensus pattern (26 bp):
ATTTTTCGTCTTTCTATTTTTCTATC
Found at i:120988474 original size:19 final size:20
Alignment explanation
Indices: 120988422--120988491 Score: 79
Period size: 20 Copynumber: 3.4 Consensus size: 20
120988412 CTCAACAAAA
120988422 TTTACAAAATAATTCAAAATAT
1 TTTA-AAAA-AATTCAAAATAT
120988444 TTTAAAAAAATTCAAAATAT
1 TTTAAAAAAATTCAAAATAT
** *
120988464 TTT-TTAAAATTTAAAATAT
1 TTTAAAAAAATTCAAAATAT
120988483 TTATAAAAA
1 TT-TAAAAA
120988492 TTTTAAAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
19 15 0.37
20 16 0.39
21 6 0.15
22 4 0.10
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (20 bp):
TTTAAAAAAATTCAAAATAT
Found at i:120988498 original size:9 final size:9
Alignment explanation
Indices: 120988464--120988556 Score: 86
Period size: 9 Copynumber: 10.4 Consensus size: 9
120988454 TTCAAAATAT
*
120988464 TTTTTAAAA
1 TTTTAAAAA
120988473 -TTTAAAATA
1 TTTTAAAA-A
120988482 TTTATAAAAA
1 TTT-TAAAAA
120988492 TTTT-AAAA
1 TTTTAAAAA
* *
120988500 -TTT-ATAT
1 TTTTAAAAA
120988507 TTTTAAAAAA
1 TTTT-AAAAA
*
120988517 TTATAAAAA
1 TTTTAAAAA
*
120988526 TTCTAAAAA
1 TTTTAAAAA
120988535 TTTTAAAAA
1 TTTTAAAAA
120988544 TTTTAAAAA
1 TTTTAAAAA
120988553 TTTT
1 TTTT
120988557 CTTAAATTAA
Statistics
Matches: 70, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
7 5 0.07
8 13 0.19
9 36 0.51
10 11 0.16
11 5 0.07
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:120988502 original size:18 final size:18
Alignment explanation
Indices: 120988469--120988551 Score: 75
Period size: 19 Copynumber: 4.7 Consensus size: 18
120988459 AATATTTTTT
*
120988469 AAAATTTAAAATATTTATA
1 AAAATTTTAAA-ATTTATA
120988488 AAAATTTTAAAATTTAT-
1 AAAATTTTAAAATTTATA
* *
120988505 --ATTTTTAAAAAATTATA
1 AAAATTTT-AAAATTTATA
*
120988522 AAAATTCTAAAAATTT-TA
1 AAAATT-TTAAAATTTATA
120988540 AAAATTTTAAAA
1 AAAATTTTAAAA
120988552 ATTTTCTTAA
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
15 5 0.10
16 8 0.15
17 5 0.10
18 14 0.27
19 19 0.37
20 1 0.02
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (18 bp):
AAAATTTTAAAATTTATA
Found at i:120988533 original size:43 final size:43
Alignment explanation
Indices: 120988460--120988542 Score: 116
Period size: 43 Copynumber: 1.9 Consensus size: 43
120988450 AAAATTCAAA
*
120988460 ATATTTTTTAAAATTTAAAATATTTATAAAAATTTTAAAATTT
1 ATATTTTTAAAAATTTAAAATATTTATAAAAATTTTAAAATTT
*
120988503 ATATTTTTAAAAAATTATAAAA-A-TTCTAAAAATTTTAAAA
1 ATATTTTT-AAAAATT-TAAAATATTTATAAAAATTTTAAAA
120988543 ATTTTAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
43 24 0.67
44 7 0.19
45 5 0.14
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (43 bp):
ATATTTTTAAAAATTTAAAATATTTATAAAAATTTTAAAATTT
Found at i:120988607 original size:23 final size:23
Alignment explanation
Indices: 120988580--120988627 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
120988570 TTTTGGGACG
120988580 TAATTAATGATTCAAATTTATCA
1 TAATTAATGATTCAAATTTATCA
120988603 TAATTAATGATTCAAATTTATCA
1 TAATTAATGATTCAAATTTATCA
120988626 TA
1 TA
120988628 CTCAAGTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (23 bp):
TAATTAATGATTCAAATTTATCA
Found at i:120988988 original size:26 final size:27
Alignment explanation
Indices: 120988932--120988997 Score: 82
Period size: 26 Copynumber: 2.5 Consensus size: 27
120988922 ATTGACGGAT
* *
120988932 TTAAAAATAAATATAATTAACTTATTT
1 TTAAAAATAAATATAATTAACTAATTA
120988959 TTAAAAATAAATATTAATT-A-TAATTA
1 TTAAAAATAAATA-TAATTAACTAATTA
*
120988985 TTAAACATAAATA
1 TTAAAAATAAATA
120988998 AATAGAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 16 0.46
27 14 0.40
28 5 0.14
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (27 bp):
TTAAAAATAAATATAATTAACTAATTA
Found at i:120990375 original size:22 final size:21
Alignment explanation
Indices: 120990321--120990375 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
120990311 GAAGATTTTT
120990321 TTTTGTTGT--TTTGCTATTG
1 TTTTGTTGTCATTTGCTATTG
* *
120990340 TTTTGCTG-CTATTTTCTCATTG
1 TTTTGTTGTC-ATTTGCT-ATTG
120990362 TTTTGTTGTCATTT
1 TTTTGTTGTCATTT
120990376 CACAATTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
19 7 0.25
21 5 0.18
22 15 0.54
23 1 0.04
ACGTcount: A:0.07, C:0.11, G:0.16, T:0.65
Consensus pattern (21 bp):
TTTTGTTGTCATTTGCTATTG
Found at i:120991185 original size:28 final size:28
Alignment explanation
Indices: 120991154--120991216 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
120991144 TCCCATATTA
120991154 ATGGGGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
* * *
120991182 ATGGGGTATAGGAAGAGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
120991210 ATGGGGT
1 ATGGGGT
120991217 TGATAATGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTCTCATAACTT
Found at i:120996587 original size:28 final size:28
Alignment explanation
Indices: 120996555--120996614 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
120996545 CATATTAATA
*
120996555 GGGTATAGTAAAAGTCTCATAACTTATG
1 GGGTATAGGAAAAGTCTCATAACTTATG
* * *
120996583 GGGTATAGGAAGAGTTTTATAACTTATG
1 GGGTATAGGAAAAGTCTCATAACTTATG
120996611 GGGT
1 GGGT
120996615 TGATAATGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.07, G:0.28, T:0.33
Consensus pattern (28 bp):
GGGTATAGGAAAAGTCTCATAACTTATG
Found at i:120996883 original size:25 final size:24
Alignment explanation
Indices: 120996844--120996900 Score: 71
Period size: 23 Copynumber: 2.3 Consensus size: 24
120996834 GAATTCTTAT
*
120996844 AAATTTTAAACTTTAGATTATTTTTA
1 AAATTTTTAACTTTAGA-T-TTTTTA
*
120996870 AAATTTTTAA-TTTATATTTTTTA
1 AAATTTTTAACTTTAGATTTTTTA
120996893 AAATTTTT
1 AAATTTTT
120996901 TATCAAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 14 0.48
24 1 0.03
25 5 0.17
26 9 0.31
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (24 bp):
AAATTTTTAACTTTAGATTTTTTA
Found at i:120996964 original size:17 final size:18
Alignment explanation
Indices: 120996924--120996965 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
120996914 ATTTTTAAAT
*
120996924 AATTTTTATTTATTTTTA
1 AATTTTTATCTATTTTTA
**
120996942 CTTTTTTATCTA-TTTTA
1 AATTTTTATCTATTTTTA
120996959 AATTTTT
1 AATTTTT
120996966 TGGGTAAATA
Statistics
Matches: 19, Mismatches: 5, Indels: 1
0.76 0.20 0.04
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (18 bp):
AATTTTTATCTATTTTTA
Found at i:120996964 original size:18 final size:18
Alignment explanation
Indices: 120996916--120996966 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
120996906 AATTATGAAT
*
120996916 TTTTAAATAATTTTTATTTA
1 TTTTAAAT--TTTTTATCTA
* *
120996936 TTTTTACTTTTTTATCTA
1 TTTTAAATTTTTTATCTA
120996954 TTTTAAATTTTTT
1 TTTTAAATTTTTT
120996967 GGGTAAATAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 20 0.77
20 6 0.23
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTAAATTTTTTATCTA
Found at i:120997198 original size:3 final size:3
Alignment explanation
Indices: 120997190--120997387 Score: 317
Period size: 3 Copynumber: 64.0 Consensus size: 3
120997180 TTTGTCATTT
*
120997190 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTTC TTC TTC TTC TGT- TTT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC TTC TTC T-TC TTC
120997236 TTCC TTC GTTC TTC GTTC TTC GTTC TTC GTTC TTC TTC TTC TTC TTC
1 TT-C TTC -TTC TTC -TTC TTC -TTC TTC -TTC TTC TTC TTC TTC TTC
120997283 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
120997331 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
120997379 TTC TTC TTC
1 TTC TTC TTC
120997388 CTCCTTCAAC
Statistics
Matches: 186, Mismatches: 1, Indels: 16
0.92 0.00 0.08
Matches are distributed among these distances:
2 1 0.01
3 167 0.90
4 18 0.10
ACGTcount: A:0.00, C:0.32, G:0.03, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:121018162 original size:43 final size:43
Alignment explanation
Indices: 121018108--121018269 Score: 166
Period size: 43 Copynumber: 3.8 Consensus size: 43
121018098 TGCCATATCT
* * *
121018108 CAGATATGGTCTTACATGTTATCACATATCGATGCCACTGTCC
1 CAGACATGGTCTTACATGTAATCACATATCGATGCCAATGTCC
* * * * * * *
121018151 CAGATAAGGTCTTACACGAAATCGA-TTAACGATGCCAATATCC
1 CAGACATGGTCTTACATGTAATC-ACATATCGATGCCAATGTCC
* *
121018194 CAGACATGGTCTTACATGTAATCTCA-ATACAATGCCAATGTCC
1 CAGACATGGTCTTACATGTAATCACATAT-CGATGCCAATGTCC
* *
121018237 CATACATGGTCTTACATGTAATCACATCTCGAT
1 CAGACATGGTCTTACATGTAATCACATATCGAT
121018270 AACATAATGT
Statistics
Matches: 94, Mismatches: 21, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
42 1 0.01
43 91 0.97
44 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (43 bp):
CAGACATGGTCTTACATGTAATCACATATCGATGCCAATGTCC
Found at i:121022564 original size:42 final size:44
Alignment explanation
Indices: 121022474--121022631 Score: 189
Period size: 43 Copynumber: 3.7 Consensus size: 44
121022464 CAACACTATA
* * * *
121022474 TCCCAGATATGGTCTTACATGTTATCACATAT-CGATGCCACTG
1 TCCCAGACATGGTCTTACACGTAATCACATATACGATGCCAATG
*
121022517 TCCCAGACAGGGTCTTACACG-AATCA-ATATACGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACATATACGATGCCAATG
* * *
121022559 TCCCAGACATAGTATTACACGTAATCACA-ATACAATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACATATACGATGCCAATG
* * *
121022602 TCCCAGACATGGTTTTACATGCAATCACAT
1 TCCCAGACATGGTCTTACACGTAATCACAT
121022632 CTCGATAACT
Statistics
Matches: 98, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
41 4 0.04
42 32 0.33
43 61 0.62
44 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (44 bp):
TCCCAGACATGGTCTTACACGTAATCACATATACGATGCCAATG
Found at i:121030942 original size:93 final size:93
Alignment explanation
Indices: 121030829--121031000 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
121030819 CGCCCATAAG
* *
121030829 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
121030894 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
121030922 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
121030987 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
121031001 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:121030997 original size:46 final size:46
Alignment explanation
Indices: 121030822--121030997 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
121030812 TGTAACCCGC
* * *
121030822 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
121030868 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
121030918 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
121030961 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
121030998 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:121038474 original size:92 final size:93
Alignment explanation
Indices: 121038362--121038532 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
121038352 CGCCCATAAG
* *
121038362 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
121038427 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
121038455 CGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
121038519 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
121038533 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 68 0.91
93 7 0.09
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:121038529 original size:46 final size:46
Alignment explanation
Indices: 121038355--121038529 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
121038345 TGTAACCCGC
* * *
121038355 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
121038401 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
121038451 -C-TCA-CGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
121038493 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
121038530 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 2 0.02
44 2 0.02
45 6 0.06
46 78 0.72
47 6 0.06
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:121039747 original size:11 final size:12
Alignment explanation
Indices: 121039722--121039752 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
121039712 CAATCATATC
121039722 ATAATTATCAAA
1 ATAATTATCAAA
121039734 ATAATTAT-AAA
1 ATAATTATCAAA
121039745 ATAATTAT
1 ATAATTAT
121039753 TTCTATCTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (12 bp):
ATAATTATCAAA
Found at i:121041677 original size:23 final size:23
Alignment explanation
Indices: 121041647--121041719 Score: 73
Period size: 23 Copynumber: 3.2 Consensus size: 23
121041637 AAACAAAAAC
121041647 AAAAAAATTTGATAGAAAAGAAA
1 AAAAAAATTTGATAGAAAAGAAA
*
121041670 AAAAAAATTCGAT-G-AAAGAAA
1 AAAAAAATTTGATAGAAAAGAAA
*
121041691 AATAAAAGAGCTTG--AGAAAAGAAA
1 AA-AAAA-A-TTTGATAGAAAAGAAA
121041715 AAAAA
1 AAAAA
121041720 TCAAACAAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
21 9 0.21
22 5 0.12
23 17 0.40
24 11 0.26
ACGTcount: A:0.68, C:0.03, G:0.15, T:0.14
Consensus pattern (23 bp):
AAAAAAATTTGATAGAAAAGAAA
Found at i:121041687 original size:21 final size:23
Alignment explanation
Indices: 121041647--121041697 Score: 70
Period size: 21 Copynumber: 2.3 Consensus size: 23
121041637 AAACAAAAAC
*
121041647 AAAAAAATTTGATAGAAAAGAAA
1 AAAAAAATTCGATAGAAAAGAAA
121041670 AAAAAAATTCGAT-G-AAAGAAA
1 AAAAAAATTCGATAGAAAAGAAA
*
121041691 AATAAAA
1 AAAAAAA
121041698 GAGCTTGAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 13 0.50
22 1 0.04
23 12 0.46
ACGTcount: A:0.71, C:0.02, G:0.12, T:0.16
Consensus pattern (23 bp):
AAAAAAATTCGATAGAAAAGAAA
Found at i:121041788 original size:32 final size:36
Alignment explanation
Indices: 121041745--121041812 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 36
121041735 AAAGTGCAAG
*
121041745 AAAGAAAATTGA-AAT-AAAAAG-AGAGCGTGAAAA
1 AAAGAAAATTGAGAATGAAAAAGAAGAGAGTGAAAA
*
121041778 AAAG-AAATTGAGATTGAAAAAGAAGAGAGTGAAAA
1 AAAGAAAATTGAGAATGAAAAAGAAGAGAGTGAAAA
121041813 GAAATAACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 7 0.23
33 6 0.20
34 6 0.20
35 11 0.37
ACGTcount: A:0.62, C:0.01, G:0.24, T:0.13
Consensus pattern (36 bp):
AAAGAAAATTGAGAATGAAAAAGAAGAGAGTGAAAA
Found at i:121044664 original size:2 final size:2
Alignment explanation
Indices: 121044657--121044685 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
121044647 ATATAGATTT
121044657 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121044686 GTAAGATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:121048153 original size:31 final size:32
Alignment explanation
Indices: 121048094--121048162 Score: 83
Period size: 31 Copynumber: 2.2 Consensus size: 32
121048084 TTAAATTCTA
121048094 ATATTTTAAATTTAAATTTATTCCTTTATATTT
1 ATATTTTAAATTTAAATTTATTCCTTTAT-TTT
*
121048127 ATATTTT-AA-TTAAATTCTATT-GTTTATTTT
1 ATATTTTAAATTTAAATT-TATTCCTTTATTTT
121048157 A-ATTTT
1 ATATTTT
121048163 TTTTCTTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
29 5 0.15
30 4 0.12
31 12 0.35
32 6 0.18
33 7 0.21
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (32 bp):
ATATTTTAAATTTAAATTTATTCCTTTATTTT
Found at i:121048177 original size:52 final size:52
Alignment explanation
Indices: 121048057--121048178 Score: 128
Period size: 52 Copynumber: 2.4 Consensus size: 52
121048047 CTTTATTTAG
*
121048057 TTTTATTCTTTAAATATTCTTTTTTAATTAAATTCTAATATTTTAAATTTAAA
1 TTTTTTTCTTTAAATATT-TTTTTTAATTAAATTCTAATATTTTAAATTTAAA
* * * *
121048110 TTTATTCCTTT--ATATTTATATTTTAATTAAATTCT-AT-TGTTT-ATTTTAAT
1 TTTTTTTCTTTAAATATTT-T-TTTTAATTAAATTCTAATAT-TTTAAATTTAAA
121048160 TTTTTTTCTTTAAATATTT
1 TTTTTTTCTTTAAATATTT
121048179 CTGTACTTAG
Statistics
Matches: 57, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
50 17 0.30
51 11 0.19
52 21 0.37
53 8 0.14
ACGTcount: A:0.30, C:0.06, G:0.01, T:0.63
Consensus pattern (52 bp):
TTTTTTTCTTTAAATATTTTTTTTAATTAAATTCTAATATTTTAAATTTAAA
Found at i:121048240 original size:129 final size:130
Alignment explanation
Indices: 121048032--121048271 Score: 351
Period size: 129 Copynumber: 1.8 Consensus size: 130
121048022 TTTTTATTTG
* * *
121048032 TTTCTTTAAATATTTCTTTATTTAGTTTTATTCTTTAAATATTCTTTTTTAATTAAATTCTAATA
1 TTTCTTTAAATATTTCTGTACTTAGTTTTATTCTTT-AATATTATTTTTTAATTAAATTCTAATA
* * *
121048097 TTTTAAATTTAAATTTATTCCTTTATATTTATATTTTAATTAAATTCTATTGTTTATTTTAATTT
65 TTTTAAACTTAAATTTATTCATTTA-AATTATATTTTAATTAAATTCTATTGTTTATTTTAATTT
121048162 TT
129 TT
* *
121048164 TTTCTTTAAATATTTCTGTACTTAG-TTTATTTCTTT-A-ATTATTTTTTAATTAAATTCTATTC
1 TTTCTTTAAATATTTCTGTACTTAGTTTTA-TTCTTTAATATTATTTTTTAATTAAATTCTAATA
*
121048226 TTTTAAACTTAAATTTATTCATTTAAATTATTTTTTAATTAAATTC
65 TTTTAAACTTAAATTTATTCATTTAAATTATATTTTAATTAAATTC
121048272 GATTATCGAC
Statistics
Matches: 98, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
128 19 0.19
129 45 0.46
130 1 0.01
131 4 0.04
132 29 0.30
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (130 bp):
TTTCTTTAAATATTTCTGTACTTAGTTTTATTCTTTAATATTATTTTTTAATTAAATTCTAATAT
TTTAAACTTAAATTTATTCATTTAAATTATATTTTAATTAAATTCTATTGTTTATTTTAATTTTT
Found at i:121048244 original size:20 final size:19
Alignment explanation
Indices: 121048202--121048255 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
121048192 ATTTCTTTAA
121048202 TTATT-TTTT-AATTAAAT
1 TTATTCTTTTAAATTAAAT
121048219 TCTATTCTTTTAAACTTAAAT
1 T-TATTCTTTTAAA-TTAAAT
*
121048240 TTATTCATTTAAATTA
1 TTATTCTTTTAAATTA
121048256 TTTTTTAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
17 1 0.03
18 4 0.12
19 7 0.22
20 13 0.41
21 7 0.22
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATTCTTTTAAATTAAAT
Found at i:121053598 original size:61 final size:61
Alignment explanation
Indices: 121053503--121053629 Score: 168
Period size: 61 Copynumber: 2.1 Consensus size: 61
121053493 ATGGGAAATC
* * * * *
121053503 AACACGGCCTGGACTTCCTTACATGGGTAGACCACATGC-CTGTGTCCT-TTTAGCAGACTTT
1 AACACGACCTGGACTTCCTCACACGGGTAGACCACACGCTC-GTG-CCTATTTAACAGACTTT
*
121053564 AACACGACCTGGACTTCCTCACACGGGTATACCACACGCTCGTGCCTATTTAACAGACTTT
1 AACACGACCTGGACTTCCTCACACGGGTAGACCACACGCTCGTGCCTATTTAACAGACTTT
121053625 AACAC
1 AACAC
121053630 TGTTTGAAGC
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
60 3 0.05
61 54 0.93
62 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (61 bp):
AACACGACCTGGACTTCCTCACACGGGTAGACCACACGCTCGTGCCTATTTAACAGACTTT
Found at i:121057800 original size:43 final size:42
Alignment explanation
Indices: 121057752--121057917 Score: 147
Period size: 43 Copynumber: 3.9 Consensus size: 42
121057742 GTTACCAAGA
*
121057752 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-AT
* * *
121057795 TGTGATTACGTGTAAGACCATGTTTGTGACATTGGCATCG-T
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
* * * * * * *
121057836 TGATCGATTACGTGTAAGACCTTTTCTAGGATAGTGGCAACGAT
1 TG-T-GATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
* * * *
121057880 ATGTGATGACATGTAAAACCATATCTGGGATA-TGGCAT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
121057918 TGTACGAGCT
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
41 3 0.03
42 6 0.06
43 87 0.87
44 2 0.02
45 2 0.02
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (42 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGAT
Found at i:121061558 original size:48 final size:47
Alignment explanation
Indices: 121061470--121061653 Score: 210
Period size: 48 Copynumber: 3.9 Consensus size: 47
121061460 TTTAGGTGAC
* * ***
121061470 ATGTGTGCTAGTGTAAGACCATGTCTGGGACATATTATCGGCATTGAG
1 ATGTGAGCTAGTGTAAGACCATGCCTGGGACATGGCATCGGC-TTGAG
* * *
121061518 ATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTTGAG
1 ATGTGAGCTAGTGTAAGACCATGCCTGGGACATGGCATCGG-CTTGAG
* * * *
121061566 TTGTGAGCCAGTGTAAGACCATGCCTGGGACATGGCATCAGCTATGGG
1 ATGTGAGCTAGTGTAAGACCATGCCTGGGACATGGCATCGGCT-TGAG
*
121061614 ATGTG-TC-AGTGTAAGACCATGCCTGGGACATGGCATCGGC
1 ATGTGAGCTAGTGTAAGACCATGCCTGGGACATGGCATCGGC
121061654 CTCGGTTACG
Statistics
Matches: 118, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
46 32 0.27
47 3 0.03
48 82 0.69
49 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (47 bp):
ATGTGAGCTAGTGTAAGACCATGCCTGGGACATGGCATCGGCTTGAG
Found at i:121061636 original size:46 final size:47
Alignment explanation
Indices: 121061479--121061746 Score: 186
Period size: 48 Copynumber: 5.6 Consensus size: 47
121061469 CATGTGTGCT
* *** * * * *
121061479 AGTGTAAGACCATGTCTGGGACATATTATCGGCATTGAGATGAGAGCT
1 AGTGTAAGACCATGCCTGGGACATGGCATCAGCCTTGAGATG-TAGCC
* * * *
121061527 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTTGAGTTGTGAGCC
1 AGTGTAAGACCATGCCTGGGACATGGCATCAGCCTTGAGATGT-AGCC
* *
121061575 AGTGTAAGACCATGCCTGGGACATGGCATCAG-CTATGGGATGT-GTC
1 AGTGTAAGACCATGCCTGGGACATGGCATCAGCCT-TGAGATGTAGCC
* * * ***
121061621 AGTGTAAGACCATGCCTGGGACATGGCATCGGCCTCG-GTTACGGTATTT
1 AGTGTAAGACCATGCCTGGGACATGGCATCAGCCTTGAG--A-TGTAGCC
** * *
121061670 AGTGTAAGACCATGTTTGGGATATGGCATCA-ACTTGATGTATG-AGCC
1 AGTGTAAGACCATGCCTGGGACATGGCATCAGCCTTGA-G-ATGTAGCC
** *
121061717 AGTGTAAGACCATGTTTGGGGCATGGCATC
1 AGTGTAAGACCATGCCTGGGACATGGCATC
121061747 GGTATCCTAC
Statistics
Matches: 180, Mismatches: 31, Indels: 19
0.78 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 34 0.19
47 34 0.19
48 80 0.44
49 30 0.17
50 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGCCTGGGACATGGCATCAGCCTTGAGATGTAGCC
Found at i:121067680 original size:12 final size:12
Alignment explanation
Indices: 121067663--121067692 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
121067653 ACAAAATCCA
121067663 AATTTAATTTCC
1 AATTTAATTTCC
*
121067675 AATTTAATTTCT
1 AATTTAATTTCC
121067687 AATTTA
1 AATTTA
121067693 TTTAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (12 bp):
AATTTAATTTCC
Found at i:121072281 original size:13 final size:13
Alignment explanation
Indices: 121072263--121072297 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
121072253 TCGTGTGCAA
121072263 CACACGGCCAGGT
1 CACACGGCCAGGT
121072276 CACACGGCCAGGT
1 CACACGGCCAGGT
*
121072289 GACACGGCC
1 CACACGGCC
121072298 GTGTGTCCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.23, C:0.40, G:0.31, T:0.06
Consensus pattern (13 bp):
CACACGGCCAGGT
Found at i:121077459 original size:31 final size:31
Alignment explanation
Indices: 121077348--121077461 Score: 167
Period size: 31 Copynumber: 3.7 Consensus size: 31
121077338 CTTGTCACTT
121077348 GTAGCCGAAGCTACCA-TTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTT-TTCACTGATCAG
* * * *
121077379 GTAGCTGGAGCTACCATTTTTCACTGGTCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
121077410 GTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
121077441 GTAGCCGAAGCTATCACTTTT
1 GTAGCCGAAGCTACCACTTTT
121077462 AACTTGTCAT
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
31 72 0.97
32 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:121077538 original size:50 final size:50
Alignment explanation
Indices: 121077441--121077617 Score: 246
Period size: 50 Copynumber: 3.5 Consensus size: 50
121077431 CACTGATCAG
* * * *
121077441 GTAGCCGAAGCTATCACTTTTAACTTGTCATTTGTCCTTGATTAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCACTTGTCCTTGATCAGATAAGT
* * *
121077492 GTAGTCGAAACTATCACTTATCACTTTCACTTGTTCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
* *
121077542 GTAACCGAAGCTATCACTTATCACTTTCACTTATCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
* *
121077592 ATAGCCGAAGCTATCTCTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
121077618 GTTGCCATGG
Statistics
Matches: 111, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 89 0.80
51 22 0.20
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
Found at i:121079114 original size:30 final size:30
Alignment explanation
Indices: 121079080--121079140 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
121079070 ATATGAAGAG
121079080 AAATGAAGAGAATTCTAGATATTCTAATTT
1 AAATGAAGAGAATTCTAGATATTCTAATTT
121079110 AAATGAAGAGAATTCTAGATATTCTAATTT
1 AAATGAAGAGAATTCTAGATATTCTAATTT
121079140 A
1 A
121079141 GTCCCATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.36
Consensus pattern (30 bp):
AAATGAAGAGAATTCTAGATATTCTAATTT
Found at i:121084753 original size:20 final size:20
Alignment explanation
Indices: 121084720--121084780 Score: 59
Period size: 25 Copynumber: 2.8 Consensus size: 20
121084710 CTCGACATGC
*
121084720 ATAATCAAAGCAAGTTCTAGA
1 ATAA-CAAATCAAGTTCTAGA
121084741 ATAACAAATCAAGTTGACATCTAGA
1 ATAACAAATCAAG-T----TCTAGA
121084766 ATAACAAATCAAGTT
1 ATAACAAATCAAGTT
121084781 GACATACTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
20 9 0.26
21 5 0.15
24 1 0.03
25 19 0.56
ACGTcount: A:0.49, C:0.15, G:0.11, T:0.25
Consensus pattern (20 bp):
ATAACAAATCAAGTTCTAGA
Found at i:121084763 original size:25 final size:25
Alignment explanation
Indices: 121084735--121084785 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
121084725 CAAAGCAAGT
121084735 TCTAGAATAACAAATCAAGTTGACA
1 TCTAGAATAACAAATCAAGTTGACA
121084760 TCTAGAATAACAAATCAAGTTGACA
1 TCTAGAATAACAAATCAAGTTGACA
121084785 T
1 T
121084786 ACTCATAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.47, C:0.16, G:0.12, T:0.25
Consensus pattern (25 bp):
TCTAGAATAACAAATCAAGTTGACA
Found at i:121090852 original size:5 final size:5
Alignment explanation
Indices: 121090842--121090870 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
121090832 AATTTGTGAA
121090842 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
121090871 ATAAGCACAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:121095024 original size:52 final size:51
Alignment explanation
Indices: 121094956--121095084 Score: 122
Period size: 51 Copynumber: 2.5 Consensus size: 51
121094946 TTATTATTTA
* * * **
121094956 TTTTAGACTATTTTATTTATCTTAAATTTCATATATTAAACTGTTTTAAATTG
1 TTTTAGA-TATATTATTTATATTAAATTTCATATACTAAAC-ACTTTAAATTG
* *
121095009 TTTTAGATATATTATTTTAAATT--ATTTCATATACTATACACTTTAAATTG
1 TTTTAGATATATTA-TTTATATTAAATTTCATATACTAAACACTTTAAATTG
* *
121095059 TTTT-G-TACATTATTTATTTTAAATTT
1 TTTTAGATATATTATTTATATTAAATTT
121095085 GTTTTATGTA
Statistics
Matches: 63, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
47 6 0.10
48 6 0.10
49 5 0.08
50 13 0.21
51 14 0.22
52 6 0.10
53 13 0.21
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.56
Consensus pattern (51 bp):
TTTTAGATATATTATTTATATTAAATTTCATATACTAAACACTTTAAATTG
Found at i:121095097 original size:27 final size:26
Alignment explanation
Indices: 121094999--121095312 Score: 122
Period size: 26 Copynumber: 12.3 Consensus size: 26
121094989 TATTAAACTG
* *
121094999 TTTTAAATTGTTTTAGATA-TA-TTA
1 TTTTAAATTTTTTTATATATTATTTA
* * * **
121095023 TTTTAAATTATTTCATATACTATACA
1 TTTTAAATTTTTTTATATATTATTTA
* * * *
121095049 CTTTAAATTGTTTTGTACATTATTTA
1 TTTTAAATTTTTTTATATATTATTTA
* *
121095075 TTTTAAATTTGTTTTATGTATTATTCA
1 TTTTAAATTT-TTTTATATATTATTTA
*
121095102 TTTT-AA-TTTATT-T-TATTATTTA
1 TTTTAAATTTTTTTATATATTATTTA
* *
121095124 CTTTAAATTTTTTCATATATTA-TTA
1 TTTTAAATTTTTTTATATATTATTTA
* * * *
121095149 TTTCAAATTTTTATATGTATTATCTA
1 TTTTAAATTTTTTTATATATTATTTA
** * *** * * *
121095175 TTTTTTA-TATACCATTTATTTTTTT
1 TTTTAAATTTTTTTATATATTATTTA
* * * * *
121095200 TTTAAAAATGTTTTGTATATTACTTA
1 TTTTAAATTTTTTTATATATTATTTA
* *
121095226 TTTTAAATTTCTTTTTACATAATATTTA
1 TTTTAAA-TT-TTTTTATATATTATTTA
* * ** *
121095254 CTTTAAACTCATTCATATATTATTTA
1 TTTTAAATTTTTTTATATATTATTTA
* ** * * *
121095280 TCTTAAATTAGTTTACATATCATTTG
1 TTTTAAATTTTTTTATATATTATTTA
121095306 TTTTAAA
1 TTTTAAA
121095313 AAAAATTTTC
Statistics
Matches: 202, Mismatches: 77, Indels: 20
0.68 0.26 0.07
Matches are distributed among these distances:
22 11 0.05
23 3 0.01
24 23 0.11
25 39 0.19
26 90 0.45
27 18 0.09
28 18 0.09
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.59
Consensus pattern (26 bp):
TTTTAAATTTTTTTATATATTATTTA
Found at i:121095486 original size:16 final size:16
Alignment explanation
Indices: 121095441--121095498 Score: 59
Period size: 15 Copynumber: 3.8 Consensus size: 16
121095431 TTTTTTCACA
*
121095441 TTATTTATTTTA-AAT
1 TTATTTATTTTACATT
* *
121095456 TCATTTATTAT-CATT
1 TTATTTATTTTACATT
121095471 TTAATTT-TTTTACATT
1 TT-ATTTATTTTACATT
121095487 TTATTTATTTTA
1 TTATTTATTTTA
121095499 AGTTGCTTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
15 19 0.56
16 15 0.44
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (16 bp):
TTATTTATTTTACATT
Found at i:121095512 original size:21 final size:21
Alignment explanation
Indices: 121095488--121095539 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
121095478 TTTTACATTT
*
121095488 TATTTATTTTAAGTTGCTT-TA
1 TATTTATTTTAAATTG-TTATA
*
121095509 TATTTTTTTTAAATTGTTATA
1 TATTTATTTTAAATTGTTATA
121095530 TATATTATTT
1 TAT-TTATTT
121095540 AATTTATTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 2 0.08
21 19 0.73
22 5 0.19
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.65
Consensus pattern (21 bp):
TATTTATTTTAAATTGTTATA
Found at i:121097458 original size:19 final size:19
Alignment explanation
Indices: 121097434--121097478 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
121097424 TGTCTCTTTT
*
121097434 TGCATT-CATTCCATACATC
1 TGCATTACATTCCAT-CATA
*
121097453 TGCATTACATTGCATCATA
1 TGCATTACATTCCATCATA
121097472 TGCATTA
1 TGCATTA
121097479 AAATTCACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (19 bp):
TGCATTACATTCCATCATA
Found at i:121101571 original size:44 final size:45
Alignment explanation
Indices: 121101523--121101640 Score: 148
Period size: 44 Copynumber: 2.6 Consensus size: 45
121101513 AGCCACTACC
* * *
121101523 CTTATTTCTTTGAAGTTGCAGTGGAGCAGGTTGAAGTTACA-AGT
1 CTTATTTCTTTGAAGTTGCAGTGGAGCAGGTAGAAGATACAGAAT
* * * *
121101567 CTTATCTCCTTGAAGTTGCAGTGGAGCATGTAGAAGATAGAGAAT
1 CTTATTTCTTTGAAGTTGCAGTGGAGCAGGTAGAAGATACAGAAT
* *
121101612 CTTATTTCTCTGAAGTTGCAGTAGAGCAG
1 CTTATTTCTTTGAAGTTGCAGTGGAGCAG
121101641 ATTAAAGAAA
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
44 35 0.57
45 26 0.43
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (45 bp):
CTTATTTCTTTGAAGTTGCAGTGGAGCAGGTAGAAGATACAGAAT
Found at i:121101868 original size:44 final size:44
Alignment explanation
Indices: 121101796--121102255 Score: 375
Period size: 44 Copynumber: 10.1 Consensus size: 44
121101786 TTACCTTAGA
* * * *
121101796 AAATCTTATCTTCCTGAAGTTGCAGTAGAGTAGATTGAAGCCAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * *
121101840 AAACCTTATCTCCCTGAAGTTGCGGTAGAGCA-AGTTGAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGCTAC
** * * *
121101884 ATGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * *
121101928 AAGTCTTATCTCCTTGAAGTTGTAGTGGAACAGATTGAAGCTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * * *
121101972 AAATCACAAACCTTATCCCCCTGAAGTTGTAGCGGAGTAGGTTGAA-CTTAC
1 AAAT-------CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC-TAC
* * * * * ** *
121102023 AAGTCTTATCTCCCTGAAATTGCAATGGAGCAGACTAAATATAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-C
*
121102068 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTTCAAATCAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG---C---T-AC
* * * *
121102119 AAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * * *
121102163 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGGTAG
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
* *
121102207 GAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTAC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
121102251 AAATC
1 AAATC
121102256 ACAAATCTTA
Statistics
Matches: 330, Mismatches: 67, Indels: 38
0.76 0.15 0.09
Matches are distributed among these distances:
43 1 0.00
44 221 0.67
45 34 0.10
50 1 0.00
51 72 0.22
52 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (44 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
Found at i:121102046 original size:139 final size:139
Alignment explanation
Indices: 121101837--121102286 Score: 609
Period size: 139 Copynumber: 3.2 Consensus size: 139
121101827 AGATTGAAGC
* * * * *
121101837 CACAAACCTTATCTCCCTGAAGTTGCGGTAGAGCAAGTTGAAGTTACATGTCTTATCTCCCT-AA
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
** * *
121101901 AGTTGCAGTGGAGCAGGTTGAAGTTA-CAAGTCTTATCTCCTTGAAGTTGTAGTGGAACAGATTG
66 A-TTGCAGTGGAGCAGACTGAAGTTAGCAA-TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTG
121101965 AAGCTACAAAT
129 AAGCTACAAAT
* * * *
121101976 CACAAACCTTATCCCCCTGAAGTTGTAGCGGAGTAGGTTGAACTTACAAGTCTTATCTCCCTGAA
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
* * * * *
121102041 ATTGCAATGGAGCAGACT-AAATATAGTAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTG
66 ATTGCAGTGGAGCAGACTGAAGT-TAG-CAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTG
*
121102105 AAGCTTCAAAT
129 AAGCTACAAAT
121102116 CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
* * * *
121102181 GTTGCAGTGGAGTAGACTGAAGGTAGGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAA
66 ATTGCAGTGGAGCAGACTGAAGTTAGCAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAA
121102246 GCTACAAAT
131 GCTACAAAT
* * *
121102255 CACAAATCTTATTTCCCTGAAGGTGCAGTGGA
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGGA
121102287 ACATATTAAA
Statistics
Matches: 271, Mismatches: 35, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
138 3 0.01
139 142 0.52
140 122 0.45
141 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (139 bp):
CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
ATTGCAGTGGAGCAGACTGAAGTTAGCAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAA
GCTACAAAT
Found at i:121102191 original size:95 final size:89
Alignment explanation
Indices: 121102117--121102286 Score: 180
Period size: 88 Copynumber: 1.9 Consensus size: 89
121102107 GCTTCAAATC
* * *
121102117 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGT-TACAAGTCTTATCTCCCTGAA
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTATACAAATCTTATCTCCCTGAA
* *
121102181 GTTGCAGTGGAGTAGACTGAAGGT
66 GTTGCAGTGGAGTAGATTGAAGTT
** * * *
121102205 AGGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTACAAATCACAAATCTTATTTC
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T----AT-ACAAATCTTATCTC
*
121102270 CCTGAAGGTGCAGTGGA
60 CCTGAAGTTGCAGTGGA
121102287 ACATATTAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
88 36 0.55
89 1 0.02
94 1 0.02
95 28 0.42
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (89 bp):
ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTATACAAATCTTATCTCCCTGAA
GTTGCAGTGGAGTAGATTGAAGTT
Found at i:121102365 original size:139 final size:139
Alignment explanation
Indices: 121101837--121102366 Score: 322
Period size: 139 Copynumber: 3.8 Consensus size: 139
121101827 AGATTGAAGC
* * * * * * * * *
121101837 CACAAACCTTATCTCCCTGAAGTTGCGGTAGAGCA-AGTTGAAGTTACATGTCTTATCTCCCTAA
1 CACAAACCTTATCTCCCTGAAGGTGCAGTGGAACAGA-TTAAAGCTACAAGTCTTATCTCACTGA
* * * * ** ** * ** * *
121101901 AGTTGCAGTGGAGCAGGTTGAAGTTAC-AAGTCTTATCTCCTTGAAGTTGTAGTGGAACAGATTG
65 AGCTACAGTAGAGTAGACTGAAGGCACGAA-TCCTATCTCCCAGAAGTTGCAGTGGAGCAGATTG
121101965 AAGCTACAAAT
129 AAGCTACAAAT
* * * * ** * * *
121101976 CACAAACCTTATCCCCCTGAAGTTGTAGCGGAGTAGGTTGAA-CTTACAAGTCTTATCTCCCTGA
1 CACAAACCTTATCTCCCTGAAGGTGCAGTGGAACAGATTAAAGC-TACAAGTCTTATCTCACTGA
** * * * * * *** *
121102040 AATTGCAATGGAGCAGACTAAATATA-GTAAATCTTATCTCCCTA-AAGTTGCAGTGGAGCAGAT
65 AGCTACAGTAGAGTAGACTGAAGGCACG--AATCCTATCTCCC-AGAAGTTGCAGTGGAGCAGAT
*
121102103 TGAAGCTTCAAAT
127 TGAAGCTACAAAT
* ** * * * *
121102116 CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
1 CACAAACCTTATCTCCCTGAAGGTGCAGTGGAACAGATTAAAGCTACAAGTCTTATCTCACTGAA
* * * * * * * *
121102181 GTTGCAGTGGAGTAGACTGAAGGTAGGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAA
66 GCTACAGTAGAGTAGACTGAAGGCACGAATCCTATCTCCCAGAAGTTGCAGTGGAGCAGATTGAA
121102246 GCTACAAAT
131 GCTACAAAT
* * * *
121102255 CACAAATCTTATTTCCCTGAAGGTGCAGTGGAACATATTAAAGCTACAAGTC-TAGTCTCATTGA
1 CACAAACCTTATCTCCCTGAAGGTGCAGTGGAACAGATTAAAGCTACAAGTCTTA-TCTCACTGA
* * *
121102319 AGCTATAGTAGAGTGGAGC-GAA-GCACTAATTCCTATAC-CCCAGAAGTT
65 AGCTACAGTAGAGTAGA-CTGAAGGCACGAA-TCCTAT-CTCCCAGAAGTT
121102367 ACAGGAGGAT
Statistics
Matches: 322, Mismatches: 56, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
138 6 0.02
139 193 0.60
140 120 0.37
141 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (139 bp):
CACAAACCTTATCTCCCTGAAGGTGCAGTGGAACAGATTAAAGCTACAAGTCTTATCTCACTGAA
GCTACAGTAGAGTAGACTGAAGGCACGAATCCTATCTCCCAGAAGTTGCAGTGGAGCAGATTGAA
GCTACAAAT
Found at i:121103923 original size:19 final size:20
Alignment explanation
Indices: 121103893--121103934 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 20
121103883 GGACTCTTTT
121103893 TTATTATTATTTAT-TTAAGA
1 TTATTATTATTTATCTTAA-A
121103913 TTATT-TTATTTATCTTAAA
1 TTATTATTATTTATCTTAAA
121103932 TTA
1 TTA
121103935 CATATATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (20 bp):
TTATTATTATTTATCTTAAA
Found at i:121103974 original size:52 final size:49
Alignment explanation
Indices: 121103918--121104033 Score: 110
Period size: 50 Copynumber: 2.3 Consensus size: 49
121103908 TAAGATTATT
* * * *
121103918 TTATTTATCTTAAATTACATATATTAAACTATTTTAAATTGTTTTAGATATA
1 TTATTTATATTAAATTACATATACTAAAC-ACTTTAAATTGTTTT-G-TACA
* * *
121103970 TTATTTTAAATT--ATTTCATATACTATACACTTTAAATTGTTTTGTACA
1 TTA-TTTATATTAAATTACATATACTAAACACTTTAAATTGTTTTGTACA
*
121104018 TTATTTATTTTAAATT
1 TTATTTATATTAAATT
121104034 TGTTTTATGT
Statistics
Matches: 52, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
47 6 0.12
48 6 0.12
49 4 0.08
50 14 0.27
51 13 0.25
52 3 0.06
53 6 0.12
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.54
Consensus pattern (49 bp):
TTATTTATATTAAATTACATATACTAAACACTTTAAATTGTTTTGTACA
Found at i:121104029 original size:26 final size:26
Alignment explanation
Indices: 121103948--121104067 Score: 100
Period size: 26 Copynumber: 4.7 Consensus size: 26
121103938 ATATTAAACT
* *
121103948 ATTTTAAATTGTTTTAGATA-TATT-
1 ATTTTAAATTGTTTTATACATTATTC
* * * * *
121103972 ATTTTAAATTATTTCATATACTATAC
1 ATTTTAAATTGTTTTATACATTATTC
* * *
121103998 ACTTTAAATTGTTTTGTACATTATTT
1 ATTTTAAATTGTTTTATACATTATTC
**
121104024 ATTTTAAATTTGTTTTATGTATTATTC
1 ATTTTAAA-TTGTTTTATACATTATTC
*
121104051 ATTTTAATTTGTTTTAT
1 ATTTTAAATTGTTTTAT
121104068 TATTTACTTT
Statistics
Matches: 75, Mismatches: 18, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
24 17 0.23
25 3 0.04
26 34 0.45
27 21 0.28
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (26 bp):
ATTTTAAATTGTTTTATACATTATTC
Found at i:121104226 original size:26 final size:26
Alignment explanation
Indices: 121104188--121104253 Score: 64
Period size: 26 Copynumber: 2.5 Consensus size: 26
121104178 TAAATTTCTT
* *
121104188 TTTACATAATATTTA-CTTTAAACTCA-
1 TTTATATATTATTTATC-TTAAA-TCAG
*
121104214 TTTATATATTATTTATCTTAAATTAG
1 TTTATATATTATTTATCTTAAATCAG
*
121104240 TTTATATATCATTT
1 TTTATATATTATTT
121104254 GTTTCAAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
25 2 0.06
26 31 0.91
27 1 0.03
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.55
Consensus pattern (26 bp):
TTTATATATTATTTATCTTAAATCAG
Found at i:121104433 original size:26 final size:25
Alignment explanation
Indices: 121104404--121104491 Score: 69
Period size: 21 Copynumber: 3.6 Consensus size: 25
121104394 TTTTAAATTC
*
121104404 ATTTATTATCATTTTAA-TTTTTTTAT
1 ATTTATT-T-ATTTTAAGTTGTTTTAT
121104430 ATTTTATTTATTTTAAGTTGTTTTAT
1 A-TTTATTTATTTTAAGTTGTTTTAT
* *
121104456 A--T-TTT-TTTTAAATTGTTATAT
1 ATTTATTTATTTTAAGTTGTTTTAT
*
121104477 ATATTATTTAATTTA
1 AT-TTATTTATTTTA
121104492 TTGGGCTTTA
Statistics
Matches: 51, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
21 15 0.29
22 3 0.06
23 1 0.02
24 1 0.02
25 10 0.20
26 15 0.29
27 6 0.12
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.67
Consensus pattern (25 bp):
ATTTATTTATTTTAAGTTGTTTTAT
Found at i:121110778 original size:41 final size:40
Alignment explanation
Indices: 121110702--121110787 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 40
121110692 CAAATACATT
*
121110702 TAAAACAAATATTAAAACAAGAAACAAATAAAAAATGATAC
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAAT-ATAA
* * * * **
121110743 TAAAACAATTCTTAAAACAATACACAAATTGAAAATATAA
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
121110783 TAAAA
1 TAAAA
121110788 AGTGATTATA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 8 0.21
41 30 0.79
ACGTcount: A:0.65, C:0.10, G:0.03, T:0.21
Consensus pattern (40 bp):
TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
Found at i:121110838 original size:28 final size:27
Alignment explanation
Indices: 121110774--121110838 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
121110764 ACACAAATTG
* * *
121110774 AAAATATAATAAAAAGTGATTATATTA
1 AAAATAAAATAAAAAGTAAATATATTA
* *
121110801 AAATTGAAAATAAAATGTAAATATGATTA
1 AAAAT-AAAATAAAAAGTAAATAT-ATTA
121110830 AAAATAAAA
1 AAAATAAAA
121110839 AATATATATA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
27 4 0.13
28 18 0.60
29 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATAAAATAAAAAGTAAATATATTA
Found at i:121112517 original size:7 final size:7
Alignment explanation
Indices: 121112494--121112543 Score: 64
Period size: 7 Copynumber: 6.9 Consensus size: 7
121112484 ATTAATACAA
*
121112494 TATATTG
1 TATATTT
*
121112501 TATTTTT
1 TATATTT
121112508 TATATTT
1 TATATTT
121112515 TATATTT
1 TATATTT
121112522 TATATTTT
1 TATA-TTT
121112530 ATATATTT
1 -TATATTT
121112538 TATATT
1 TATATT
121112544 ATACAATAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
7 28 0.74
8 6 0.16
9 4 0.11
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (7 bp):
TATATTT
Found at i:121114007 original size:24 final size:26
Alignment explanation
Indices: 121113970--121114017 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
121113960 AAAATTACAT
*
121113970 TAAAAATATTTTTTTAA-AGAAAAGG
1 TAAAAATATATTTTTAACAGAAAAGG
121113995 TAAAAATA-ATTTTTAACAGAAAA
1 TAAAAATATATTTTTAACAGAAAA
121114018 TACGAAGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.56, C:0.02, G:0.08, T:0.33
Consensus pattern (26 bp):
TAAAAATATATTTTTAACAGAAAAGG
Found at i:121115156 original size:44 final size:44
Alignment explanation
Indices: 121115087--121115173 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
121115077 GCCTTTGACT
* *
121115087 GTCCCAACTCAATCAAAATCCTAGAACACATTTGGCAATTTATG
1 GTCCAAACTCAATCAAAATCCTAGAACACATTTGACAATTTATG
*
121115131 GTCCAAACTCAATCAAAATCGTAGAACACATTTGACAATTTAT
1 GTCCAAACTCAATCAAAATCCTAGAACACATTTGACAATTTAT
121115174 CTATCTACTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28
Consensus pattern (44 bp):
GTCCAAACTCAATCAAAATCCTAGAACACATTTGACAATTTATG
Found at i:121119673 original size:44 final size:44
Alignment explanation
Indices: 121119569--121119729 Score: 130
Period size: 44 Copynumber: 3.7 Consensus size: 44
121119559 CTATTTTTAG
* * * *
121119569 TCTGCTCCACTGCAACTTTAGGGAGATAAGA-C-TTGTAACTTCGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCAATG--CCTTCAA
* * * * **
121119613 CCTGC-CCTACTACAACTTCAGGGGGATAAGGTCCGTGCCTTCAA
1 TCTGCTCC-ACTGCAACTTCAGGGAGATAAGATCAATGCCTTCAA
* * * *
121119657 TCTGCTCCACTGCAACTTCAGGGATATAAGATTAATGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCAATGCCTTCAA
* *
121119701 TCTGTTCCACTGCAACTTCAAGGAGATAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAA
121119730 TATTTACCAT
Statistics
Matches: 92, Mismatches: 21, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
43 2 0.02
44 85 0.92
45 3 0.03
46 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATCAATGCCTTCAA
Found at i:121119876 original size:45 final size:45
Alignment explanation
Indices: 121119800--121120246 Score: 172
Period size: 44 Copynumber: 9.8 Consensus size: 45
121119790 TCGTAGTTTT
* * *
121119800 AATCTGTTCCACTACAACTTTAGGGAAATAAGATTCGTTAACTTC
1 AATCTGCTCCACTACAACTTTAGGGAGATAAGATTCGTTAACTTA
* * *
121119845 AGTCTGCTCCACTATAAATTTAGGGAGATAAGACTT-G-TAACTTA
1 AATCTGCTCCACTACAACTTTAGGGAGATAAGA-TTCGTTAACTTA
* * * * ** *
121119889 AACCTGCTCCACTGCAACTTTAGGAAGATAAGGTTCG-TGGCTTT
1 AATCTGCTCCACTACAACTTTAGGGAGATAAGATTCGTTAACTTA
* * * ** ** *
121119933 AATTTGCTCCACTGCAACTTCAGGGAGATAAGATT-AATGGCTTT
1 AATCTGCTCCACTACAACTTTAGGGAGATAAGATTCGTTAACTTA
* * * * **
121119977 AATCTACTCCACTGCAACTTCAGAGAGATAAGATTC-ACAA-TGATA
1 AATCTGCTCCACTACAACTTTAGGGAGATAAGATTCGTTAACT--TA
* * * * * * * * * *
121120022 GATTTGATCCGACCTACTGCAACTTCAGAGACATAGGACTTGTAACCTGTAGCTTT
1 AATCTGCTCC-A-CTA---CAACTTTAGGGAGATAAGA--T-T--CGT-TAACTTA
* * * * * * *
121120078 AATCTGTTCCACTGCAACTTCAAGGAAATAAGATTCGCTAACTTC
1 AATCTGCTCCACTACAACTTTAGGGAGATAAGATTCGTTAACTTA
* * * * *
121120123 AATCTGCTCCACTGCAACTTTAGGGAGATAAGACTAG-CAACTTC
1 AATCTGCTCCACTACAACTTTAGGGAGATAAGATTCGTTAACTTA
* * * * * ** *
121120167 AACCTGCTCCATTGCAACTTTAAGGAGATAAGATT-GGTGGCTTC
1 AATCTGCTCCACTACAACTTTAGGGAGATAAGATTCGTTAACTTA
* * *
121120211 GATCTGCTCCACTACAACTTCAGGGAGATAAAATTC
1 AATCTGCTCCACTACAACTTTAGGGAGATAAGATTC
121120247 ATCATGGCAG
Statistics
Matches: 308, Mismatches: 73, Indels: 42
0.73 0.17 0.10
Matches are distributed among these distances:
43 4 0.01
44 176 0.57
45 72 0.23
46 4 0.01
47 2 0.01
48 1 0.00
49 1 0.00
50 17 0.06
51 15 0.05
52 1 0.00
53 1 0.00
54 2 0.01
55 2 0.01
56 8 0.03
57 1 0.00
58 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (45 bp):
AATCTGCTCCACTACAACTTTAGGGAGATAAGATTCGTTAACTTA
Found at i:121119974 original size:44 final size:44
Alignment explanation
Indices: 121119892--121120699 Score: 318
Period size: 44 Copynumber: 17.7 Consensus size: 44
121119882 TAACTTAAAC
* * * **
121119892 CTGCTCCACTGCAACTTTAGGAAGATAAGGTTCGTGGCTTTAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAAT
*
121119936 TTGCTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAAT
* * * *
121119980 CTACTCCACTGCAACTTCAGAGAGATAAGATTCACAATGATAGATTTGAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATT---AATG---GCTTTAAT
* * * * *
121120030 CCGAC-CTACTGCAACTTCAGAGACATAGGACTTGTAACCTGTAGCTTTAAT
1 CTG-CTCCACTGCAACTTCAGGGAGATAAGA--T-TAA--TG--GCTTTAAT
* * * ** ** *
121120081 CTGTTCCACTGCAACTTCAAGGAAATAAGATTCGCTAACTTCAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATT-AATGGCTTTAAT
* * **** * *
121120126 CTGCTCCACTGCAACTTTAGGGAGATAAGACTAGCAACTTCAAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAAT
* * * ** **
121120170 CTGCTCCATTGCAACTTTAAGGAGATAAGATTGGTGGCTTCGAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAAT
* * *
121120214 CTGCTCCACTACAACTTCAGGGAGATAAAATTCATCATGGCAGATTTGAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATT-A--ATGGC---TTTAAT
** * * * *
121120264 CTGAC-CTGCTGCAACTTCA-GAAGTATAGGATTTATAGCTTTAAT
1 CTG-CTCCACTGCAACTTCAGGGAG-ATAAGATTAATGGCTTTAAT
* * ** ** * *
121120308 CTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATT-AATGGCTTTAAT
* * * ** * *
121120353 CTGATCCACTGCAACTTCAGGAAGATAAGACTT-GTAACTTCAAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGA-TTAATGGCTTTAAT
* * * * **
121120397 CTGCTCCACTACAACTTCAGAGAGATAAGGTTAGTGGCTTCGAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAAT
* * *
121120441 CTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATTTGAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATT---AAT-G--GCTTTAAT
* * * * * *
121120491 -T-CAACCTGCTGCAACTTCAGAGG-TATAGGATTTATAGCTTTAAT
1 CTGC-TCC-ACTGCAACTTCAG-GGAGATAAGATTAATGGCTTTAAT
* * * ** ** *
121120535 CTGCTCTACTGCAACTTTAGAGAGATAAGATTCGCTATCTTTAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATT-AATGGCTTTAAT
* * * * ** * *
121120580 TTTCTCCACTGCAACTTCAGGAAGATAAGACTT-GTAACTTCAAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGA-TTAATGGCTTTAAT
* * * * **
121120624 CTGTTCCACTGCAACTTCAAGGAGATAAGGTTAGTGGCTTCGAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAAT
* * *
121120668 CTGCTCCACTGCAATTTTAGAGAGATAAGATT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATT
121120700 CGCCATGGTA
Statistics
Matches: 578, Mismatches: 144, Indels: 84
0.72 0.18 0.10
Matches are distributed among these distances:
43 6 0.01
44 320 0.55
45 102 0.18
46 5 0.01
47 16 0.03
48 3 0.01
49 7 0.01
50 81 0.14
51 34 0.06
52 3 0.01
53 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (44 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAAT
Found at i:121120064 original size:278 final size:277
Alignment explanation
Indices: 121119531--121120241 Score: 962
Period size: 278 Copynumber: 2.6 Consensus size: 277
121119521 CAATCTTCTT
* * * ** *
121119531 CACTGCAACTTC-AGGAAGATAAGGTTTGCTATTTTTAGTCTGCTCCACTGCAACTTTAGGGAGA
1 CACTACAACTTCAAGGAA-ATAAGATTCGCTAACTTCAGTCTGCTCCACTGCAACTTTAGGGAGA
* * * * * *
121119595 TAAGACTTGTAACTTCGACCTGC-CCTACTACAACTTCAGGGGGATAAGGTCCGTGCCTTCAATC
65 TAAGACTTGTAACTTCAACCTGCTCC-ACTGCAACTTTA-GGAGATAAGGTTCGTGGCTTCAATC
* **
121119659 TGCTCCACTGCAACTTCAGGGATATAAGATTAATGGCTTTAATCTGTTCCACTGCAACTTCAAGG
128 TGCTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAATCTACTCCACTGCAACTTCAAGG
* * * * * **
121119724 AGATAATATTTACCATGATAGATTTGATCCGAGCTACTGCAATTTCAGAGGTATAGGACTTGTAA
193 AGATAAGATTCACAATGATAGATTTGATCCGACCTACTGCAACTTCAGAGACATAGGACTTGTAA
*
121119789 -CTCGTAGTTTTAATCTGTTC
258 CCT-GTAGCTTTAATCTGTTC
* * * ** *
121119809 CACTACAACTTTAGGGAAATAAGATTCGTTAACTTCAGTCTGCTCCACTATAAATTTAGGGAGAT
1 CACTACAACTTCAAGGAAATAAGATTCGCTAACTTCAGTCTGCTCCACTGCAACTTTAGGGAGAT
* * *
121119874 AAGACTTGTAACTTAAACCTGCTCCACTGCAACTTTAGGAAGATAAGGTTCGTGGCTTTAATTTG
66 AAGACTTGTAACTTCAACCTGCTCCACTGCAACTTTAGG-AGATAAGGTTCGTGGCTTCAATCTG
121119939 CTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAATCTACTCCACTGCAACTTC-AGAGA
130 CTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAATCTACTCCACTGCAACTTCAAG-GA
121120003 GATAAGATTCACAATGATAGATTTGATCCGACCTACTGCAACTTCAGAGACATAGGACTTGTAAC
194 GATAAGATTCACAATGATAGATTTGATCCGACCTACTGCAACTTCAGAGACATAGGACTTGTAAC
121120068 CTGTAGCTTTAATCTGTTC
259 CTGTAGCTTTAATCTGTTC
* *
121120087 CACTGCAACTTCAAGGAAATAAGATTCGCTAACTTCAATCTGCTCCACTGCAACTTTAGGGAGAT
1 CACTACAACTTCAAGGAAATAAGATTCGCTAACTTCAGTCTGCTCCACTGCAACTTTAGGGAGAT
* * * * * *
121120152 AAGACTAGCAACTTCAACCTGCTCCATTGCAACTTTAAGGAGATAAGATTGGTGGCTTCGATCTG
66 AAGACTTGTAACTTCAACCTGCTCCACTGCAACTTT-AGGAGATAAGGTTCGTGGCTTCAATCTG
*
121120217 CTCCACTACAACTTCAGGGAGATAA
130 CTCCACTGCAACTTCAGGGAGATAA
121120242 AATTCATCAT
Statistics
Matches: 377, Mismatches: 50, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
277 4 0.01
278 362 0.96
279 11 0.03
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (277 bp):
CACTACAACTTCAAGGAAATAAGATTCGCTAACTTCAGTCTGCTCCACTGCAACTTTAGGGAGAT
AAGACTTGTAACTTCAACCTGCTCCACTGCAACTTTAGGAGATAAGGTTCGTGGCTTCAATCTGC
TCCACTGCAACTTCAGGGAGATAAGATTAATGGCTTTAATCTACTCCACTGCAACTTCAAGGAGA
TAAGATTCACAATGATAGATTTGATCCGACCTACTGCAACTTCAGAGACATAGGACTTGTAACCT
GTAGCTTTAATCTGTTC
Found at i:121120319 original size:278 final size:272
Alignment explanation
Indices: 121119569--121120474 Score: 881
Period size: 278 Copynumber: 3.3 Consensus size: 272
121119559 CTATTTTTAG
* * * * *
121119569 TCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTAACTTCGACCTGC-CCTACTACAACTTCA
1 TCTGCTCCACTACAACTTTAGGGAGATAAGACTAGTAACTTCAACCTGCTCC-ACTGCAACTTTA
* * * * * * * *
121119633 GGGGGATAAGGTCCGTGCCTTCAATCTGCTCCACTGCAACTTCAGGGATATAAGATTAATGGCTT
65 AGGAGATAAGATTCGTGGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAAATTAATGGCTT
** * * *
121119698 TAATCTGTTCCACTGCAACTTCA-AGGAGATAATATTTACCATGATAGATTTGATCCGAGCTACT
130 TAATCTACTCCACTGCAACTTCAGA-GAGATAAGA-TT---ATGATAGATTTAATCCGACCTACT
* ** * * * *
121119762 GCAATTTCAGAGGTATAGGACTTGTAACTCGTAGTTTTAATCTGTTCCACTACAACTTTAGGGAA
190 GCAACTTCAGAGACATAGGACTTGTAACT-GTAGCTTTAATCTGTTCCACTGCAACTTCAAGGAA
*
121119827 ATAAGATTCGTTAACTTCAG
254 ATAAGATTCG-TAACTTCAA
* * * *
121119847 TCTGCTCCACTATAAATTTAGGGAGATAAGACTTGTAACTTAAACCTGCTCCACTGCAACTTT-A
1 TCTGCTCCACTACAACTTTAGGGAGATAAGACTAGTAACTTCAACCTGCTCCACTGCAACTTTAA
* * * * *
121119911 GGAAGATAAGGTTCGTGGCTTTAATTTGCTCCACTGCAACTTCAGGGAGATAAGATTAATGGCTT
66 GG-AGATAAGATTCGTGGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAAATTAATGGCTT
*
121119976 TAATCTACTCCACTGCAACTTCAGAGAGATAAGATTCACAATGATAGATTTGATCCGACCTACTG
130 TAATCTACTCCACTGCAACTTCAGAGAGATAAGATT----ATGATAGATTTAATCCGACCTACTG
121120041 CAACTTCAGAGACATAGGACTTGTAACCTGTAGCTTTAATCTGTTCCACTGCAACTTCAAGGAAA
191 CAACTTCAGAGACATAGGACTTGTAA-CTGTAGCTTTAATCTGTTCCACTGCAACTTCAAGGAAA
121120106 TAAGATTCGCTAACTTCAA
255 TAAGATTCG-TAACTTCAA
* * *
121120125 TCTGCTCCACTGCAACTTTAGGGAGATAAGACTAGCAACTTCAACCTGCTCCATTGCAACTTTAA
1 TCTGCTCCACTACAACTTTAGGGAGATAAGACTAGTAACTTCAACCTGCTCCACTGCAACTTTAA
* *
121120190 GGAGATAAGATTGGTGGCTTCGATCTGCTCCACTACAACTTCAGGGAGATAAAATTCATCATGGC
66 GGAGATAAGATTCGTGGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAAATT-A--ATGGC
* ** * * *
121120255 AGATTTGATCTGAC-CTGCTGCAACTTCAGA-AGTATAGGATT-T-ATAGCTTTAATCTG-CTCT
128 ---TTTAATCT-ACTCCACTGCAACTTCAGAGAG-ATAAGATTATGATAGATTTAATCCGAC-CT
* * * * * *
121120315 ACTGCAACTTCAGAGAGATAAGA--T-T--C-GCTATCTTCAGTCTGATCCACTGCAACTTC-AG
187 ACTGCAACTTCAGAGACATAGGACTTGTAACTG-TAGCTTTAATCTGTTCCACTGCAACTTCAAG
121120373 GAAGATAAGACTT-GTAACTTCAA
251 GAA-ATAAGA-TTCGTAACTTCAA
* * * ** ** * * * *
121120396 CCTGCTCCACTACAACTTCAGAGAGATAAGGTTAGTGGCTTCGATCTGCTCCACTGCAACTTCAG
1 TCTGCTCCACTACAACTTTAGGGAGATAAGACTAGTAACTTCAACCTGCTCCACTGCAACTTTAA
121120461 GGAGATAAGATTCG
66 GGAGATAAGATTCG
121120475 CCATGGTAGA
Statistics
Matches: 540, Mismatches: 70, Indels: 43
0.83 0.11 0.07
Matches are distributed among these distances:
271 79 0.15
272 32 0.06
273 2 0.00
275 1 0.00
276 1 0.00
277 5 0.01
278 373 0.69
279 10 0.02
281 5 0.01
283 2 0.00
284 28 0.05
285 2 0.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (272 bp):
TCTGCTCCACTACAACTTTAGGGAGATAAGACTAGTAACTTCAACCTGCTCCACTGCAACTTTAA
GGAGATAAGATTCGTGGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAAATTAATGGCTTT
AATCTACTCCACTGCAACTTCAGAGAGATAAGATTATGATAGATTTAATCCGACCTACTGCAACT
TCAGAGACATAGGACTTGTAACTGTAGCTTTAATCTGTTCCACTGCAACTTCAAGGAAATAAGAT
TCGTAACTTCAA
Found at i:121120399 original size:227 final size:227
Alignment explanation
Indices: 121119892--121120753 Score: 1111
Period size: 227 Copynumber: 3.8 Consensus size: 227
121119882 TAACTTAAAC
* * ** * ** *
121119892 CTGCTCCACTGCAACTTTAGGAAGATAAG-GTTCGTGGCTTTAATTTGCTCCACTGCAACTTCAG
1 CTGCTCCACTGCAACTTCAGGAAGATAAGACTT-GTAACTTCAACCTGCTCCACTGCAACTTCAA
* ** * * *
121119956 GGAGATAAGATTAATGGCTTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTCACAATGAT
65 GGAGATAAGATTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCACCATGGT
* * * *
121120021 AGATTTGATCCGACCTACTGCAACTTCAG-AGACATAGGACTTGTAACCTGTAGCTTTAATCTGT
130 AGATTTGATCCAACCTGCTGCAACTTCAGAAG-TATAGGA-TT-T-A----TAGCTTTAATCTGC
* * * *
121120085 TCCACTGCAACTTCA-AGGAAATAAGATTCGCTAACTTCAAT
187 TCTACTGCAACTTCAGA-GAGATAAGATTCGCTATCTTCAGT
* * * * * *
121120126 CTGCTCCACTGCAACTTTAGGGAGATAAGACTAGCAACTTCAACCTGCTCCATTGCAACTTTAAG
1 CTGCTCCACTGCAACTTCAGGAAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAAG
* * * * * *
121120191 GAGATAAGATTGGTGGCTTCGATCTGCTCCACTACAACTTCAGGGAGATAAAATTCATCATGGCA
66 GAGATAAGATTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCACCATGGTA
**
121120256 GATTTGATCTGACCTGCTGCAACTTCAGAAGTATAGGATTTATAGCTTTAATCTGCTCTACTGCA
131 GATTTGATCCAACCTGCTGCAACTTCAGAAGTATAGGATTTATAGCTTTAATCTGCTCTACTGCA
121120321 ACTTCAGAGAGATAAGATTCGCTATCTTCAGT
196 ACTTCAGAGAGATAAGATTCGCTATCTTCAGT
* *
121120353 CTGATCCACTGCAACTTCAGGAAGATAAGACTTGTAACTTCAACCTGCTCCACTACAACTTC-AG
1 CTGCTCCACTGCAACTTCAGGAAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAAG
* * *
121120417 AGAGATAAGGTTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGT
66 -GAGATAAGATTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCACCATGGT
* *
121120482 AGATTTGATTCAACCTGCTGCAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCTCTACTGC
130 AGATTTGATCCAACCTGCTGCAACTTCAGAAGTATAGGATTTATAGCTTTAATCTGCTCTACTGC
* *
121120547 AACTTTAGAGAGATAAGATTCGCTATCTTTAGT
195 AACTTCAGAGAGATAAGATTCGCTATCTTCAGT
* * *
121120580 TTTCTCCACTGCAACTTCAGGAAGATAAGACTTGTAACTTCAACCTGTTCCACTGCAACTTCAAG
1 CTGCTCCACTGCAACTTCAGGAAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAAG
* * * *
121120645 GAGATAAGGTTAGTGGCTTCGATCTGCTCCACTGCAATTTTAGAGAGATAAGATTCGCCATGGTA
66 GAGATAAGATTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCACCATGGTA
* *
121120710 GATTTGATCCAACCTGCTGCAATTTCAGAGGTATAGGATTTATA
131 GATTTGATCCAACCTGCTGCAACTTCAGAAGTATAGGATTTATA
121120754 ACTTCAATGA
Statistics
Matches: 560, Mismatches: 63, Indels: 17
0.88 0.10 0.03
Matches are distributed among these distances:
226 2 0.00
227 412 0.74
228 3 0.01
231 1 0.00
232 1 0.00
233 2 0.00
234 136 0.24
235 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (227 bp):
CTGCTCCACTGCAACTTCAGGAAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAAG
GAGATAAGATTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCACCATGGTA
GATTTGATCCAACCTGCTGCAACTTCAGAAGTATAGGATTTATAGCTTTAATCTGCTCTACTGCA
ACTTCAGAGAGATAAGATTCGCTATCTTCAGT
Found at i:121120412 original size:89 final size:89
Alignment explanation
Indices: 121119801--121120474 Score: 308
Period size: 88 Copynumber: 7.4 Consensus size: 89
121119791 CGTAGTTTTA
* * * * * *
121119801 ATCTGTTCCACTACAACTTTAGGGAA-ATAAGATTCGTTAACTTCAGTCTGCTCCACTATAAATT
1 ATCTGATCCACTGCAACTTCA-GGAAGATAAGATTCG-TAACTTCAATCTGCTCCACTACAACTT
* * * * *
121119865 TAGGGAGATAAGACTT-GTAACTT-AA
64 CAGAGAGATAAGA-TTAGCATCTTCAG
* * * * ** * * *
121119890 ACCTGCTCCACTGCAACTTTAGGAAGATAAGGTTCGTGGCTTTAATTTGCTCCACTGCAACTTCA
1 ATCTGATCCACTGCAACTTCAGGAAGATAAGATTCGTAACTTCAATCTGCTCCACTACAACTTCA
* *
121119955 GGGAGATAAGATTA--ATGGCTTTA-
66 GAGAGATAAGATTAGCAT--CTTCAG
** * *
121119978 ATCT-ACTCCACTGCAACTTCA-GAGAGATAAGATTCACAA-TGAT-AGATTTGATCCGACCTAC
1 ATCTGA-TCCACTGCAACTTCAGGA-AGATAAGATTCGTAACT--TCA-ATCTGCTCC-A-CTA-
* * * * *
121120039 TGCAACTTCAGAGACATAGGACTTGTAACCTGTAGCTTTA-
58 --CAACTTCAGAGAGATAAGA--T-T-A---GCATCTTCAG
* *
121120079 ATCTGTTCCACTGCAACTTCAAGGAA-ATAAGATTCGCTAACTTCAATCTGCTCCACTGCAACTT
1 ATCTGATCCACTGCAACTTC-AGGAAGATAAGATTCG-TAACTTCAATCTGCTCCACTACAACTT
* * * *
121120143 TAGGGAGATAAGACTAGCAACTTCA-
64 CAGAGAGATAAGATTAGCATCTTCAG
* * * * * ** *
121120168 ACCTGCTCCATTGCAACTTTAAGG-AGATAAGATTGGTGGCTTCGATCTGCTCCACTACAACTTC
1 ATCTGATCCACTGCAAC-TTCAGGAAGATAAGATTCGTAACTTCAATCTGCTCCACTACAACTTC
* * *
121120232 AGGGAGATAAAATT--CATCATGGCAG
65 AGAGAGATAAGATTAGCATC-T-TCAG
* * * ** * * * *
121120257 ATTTGATCTGACCTGCTGCAACTTCA-GAAGTATAGGATTTATAGCTTTAATCTGCTCTACTGCA
1 ATCTGA--T--CC-ACTGCAACTTCAGGAAG-ATAAGATTCGTAACTTCAATCTGCTCCACTACA
*
121120321 ACTTCAGAGAGATAAGATTCGCTATCTTCAG
60 ACTTCAGAGAGATAAGATTAGC-ATCTTCAG
*
121120352 -TCTGATCCACTGCAACTTCAGGAAGATAAGACTT-GTAACTTCAACCTGCTCCACTACAACTTC
1 ATCTGATCCACTGCAACTTCAGGAAGATAAGA-TTCGTAACTTCAATCTGCTCCACTACAACTTC
* ***
121120415 AGAGAGATAAGGTTAGTGGCTTC-G
65 AGAGAGATAAGATTAGCATCTTCAG
* *
121120439 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCG
1 ATCTGATCCACTGCAACTTCAGGAAGATAAGATTCG
121120475 CCATGGTAGA
Statistics
Matches: 447, Mismatches: 89, Indels: 99
0.70 0.14 0.16
Matches are distributed among these distances:
86 4 0.01
87 9 0.02
88 138 0.31
89 125 0.28
90 11 0.02
91 3 0.01
92 3 0.01
93 8 0.02
94 68 0.15
95 3 0.01
96 18 0.04
97 4 0.01
98 1 0.00
99 2 0.00
100 1 0.00
101 40 0.09
102 5 0.01
103 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (89 bp):
ATCTGATCCACTGCAACTTCAGGAAGATAAGATTCGTAACTTCAATCTGCTCCACTACAACTTCA
GAGAGATAAGATTAGCATCTTCAG
Found at i:121122071 original size:27 final size:27
Alignment explanation
Indices: 121122033--121122088 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
121122023 CCTTGTTATC
121122033 CCTTTTTGGTCGATAATTAATGCTTTT
1 CCTTTTTGGTCGATAATTAATGCTTTT
121122060 CCTTTTTGGTCGATAATTAATGCTTTT
1 CCTTTTTGGTCGATAATTAATGCTTTT
121122087 CC
1 CC
121122089 AAATAAGGCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (27 bp):
CCTTTTTGGTCGATAATTAATGCTTTT
Found at i:121123989 original size:59 final size:59
Alignment explanation
Indices: 121123897--121124014 Score: 200
Period size: 59 Copynumber: 2.0 Consensus size: 59
121123887 ATATTAAAAA
* * *
121123897 ATACACGGTGGCCGGTGCCGACGACGGACGGCGGTCTGACGGTCAACTGGTGACCGGCC
1 ATACACGGTGGCCGGTGCCGACAACGGACGGCGGTCCGACGGTCAACCGGTGACCGGCC
*
121123956 ATACACGGTGGCCGGTGCCGACAACGGACGGCGGTCCGACGGTCGACCGGTGACCGGCC
1 ATACACGGTGGCCGGTGCCGACAACGGACGGCGGTCCGACGGTCAACCGGTGACCGGCC
121124015 CATGGCCGGA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.17, C:0.32, G:0.39, T:0.12
Consensus pattern (59 bp):
ATACACGGTGGCCGGTGCCGACAACGGACGGCGGTCCGACGGTCAACCGGTGACCGGCC
Found at i:121124762 original size:11 final size:11
Alignment explanation
Indices: 121124746--121124772 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
121124736 ATTCTAACAC
121124746 TATATTATATA
1 TATATTATATA
121124757 TATATTATATA
1 TATATTATATA
121124768 TATAT
1 TATAT
121124773 ATTTTCATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
TATATTATATA
Found at i:121124769 original size:13 final size:13
Alignment explanation
Indices: 121124751--121124775 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
121124741 AACACTATAT
121124751 TATATATATATTA
1 TATATATATATTA
121124764 TATATATATATT
1 TATATATATATT
121124776 TTCATACTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TATATATATATTA
Found at i:121137489 original size:85 final size:88
Alignment explanation
Indices: 121137378--121137641 Score: 286
Period size: 85 Copynumber: 3.0 Consensus size: 88
121137368 TGATGTTTTT
*
121137378 ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACAATACACGT-TGAGG
1 ATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACAATACACGTCTGAGG
*
121137442 TATTTTCAATTTGTGTATTTTC-A
66 TATTTTCAATTTCTGT-TTTTCAA
* ** **** * *
121137465 ATTTATG-TTTC-AAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTTGGTTCATGTGCTGAG
1 ATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACAATACACGT-CTGAG
121137528 GTATTTTCAATTTCTGTTTTTCAA
65 GTATTTTCAATTTCTGTTTTTCAA
* * ** *
121137552 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCATG-CTGA
1 ATTTATGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACAATACACGTCTGA
* * *
121137616 GGTAATTTCAAATTCTGTTTGTCAA
64 GGTATTTTCAATTTCTGTTTTTCAA
121137641 A
1 A
121137642 AATCAACTCA
Statistics
Matches: 147, Mismatches: 23, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
85 37 0.25
86 9 0.06
87 33 0.22
88 4 0.03
89 27 0.18
91 37 0.25
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.38
Consensus pattern (88 bp):
ATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACAATACACGTCTGAGG
TATTTTCAATTTCTGTTTTTCAA
Found at i:121137550 original size:14 final size:15
Alignment explanation
Indices: 121137531--121137566 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
121137521 TGCTGAGGTA
121137531 TTTTC-AATTTCTGT
1 TTTTCAAATTTCTGT
121137545 TTTTCAAATTTCTG-
1 TTTTCAAATTTCTGT
121137559 TTTTCAAA
1 TTTTCAAA
121137567 AAAATCAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.22, C:0.14, G:0.06, T:0.58
Consensus pattern (15 bp):
TTTTCAAATTTCTGT
Found at i:121137670 original size:73 final size:73
Alignment explanation
Indices: 121137546--121137713 Score: 216
Period size: 73 Copynumber: 2.3 Consensus size: 73
121137536 AATTTCTGTT
* *
121137546 TTTCAAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCAT
1 TTTCAAATTTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCAC
*
121137611 GCTGAGGTAA
65 ACTGAGG-AA
* *
121137621 TTTCAAA-TTCTGTTTGTC-AAAAATCAACTCATATTGCGAGAAGTTAGTTGAGCCTCAGGGCAC
1 TTTCAAATTTCTGTTT-TCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCAC
121137684 ACTGAGGAA
65 ACTGAGGAA
*
121137693 TTTTC-AATTCCTGCTTTTCAA
1 -TTTCAAATTTCTG-TTTTCAA
121137714 TTTCTGCTTT
Statistics
Matches: 82, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
72 4 0.05
73 57 0.70
74 12 0.15
75 9 0.11
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (73 bp):
TTTCAAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACA
CTGAGGAA
Found at i:121137712 original size:14 final size:14
Alignment explanation
Indices: 121137693--121137737 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
121137683 CACTGAGGAA
*
121137693 TTTTCAATTCCTGC
1 TTTTCAATTTCTGC
121137707 TTTTCAATTTCTGC
1 TTTTCAATTTCTGC
*
121137721 TTTTTAATTTCTGC
1 TTTTCAATTTCTGC
121137735 TTT
1 TTT
121137738 CAAAAAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.13, C:0.20, G:0.07, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGC
Done.