Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 389 of 433
Found at i:121137827 original size:102 final size:102
Alignment explanation
Indices: 121137639--121137906 Score: 283
Period size: 90 Copynumber: 2.7 Consensus size: 102
121137629 TCTGTTTGTC
* *
121137639 AAAAATCAACTCATATTGCGAGAAGTTAGTTGAGCCTCAGGGCACACTGAGGAATTTTCAATTCC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACACTGAGGAATTTTCAATTCC
* * *
121137704 TGCTTTTCAATTTCTGCTTTTTAATTTCTGCTTTCAA
66 TGCTTTTCAATCTATGATTTTTAATTTCTGCTTTCAA
* * * * * *
121137741 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGATACGCTGAGGTATTTTCAATTCC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACACTGAGGAATTTTCAATTCC
*
121137806 TGTTTTTTCAATC--T-A----T-A--T-T--TTTCAA
66 TG-CTTTTCAATCTATGATTTTTAATTTCTGCTTTCAA
* * * **
121137831 AAAAATCAACTCATACTGCGAGAAATGAGTTGAGCCTCAGGGCATGCTGAGGAATTTTCAATTCC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACACTGAGGAATTTTCAATTCC
121137896 TGCTTTTCAAT
66 TGCTTTTCAAT
121137907 TTCTGTTTTT
Statistics
Matches: 144, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
89 8 0.06
90 64 0.44
92 1 0.01
93 1 0.01
95 1 0.01
96 1 0.01
101 1 0.01
102 59 0.41
103 8 0.06
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (102 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACACTGAGGAATTTTCAATTCC
TGCTTTTCAATCTATGATTTTTAATTTCTGCTTTCAA
Found at i:121137867 original size:192 final size:180
Alignment explanation
Indices: 121137707--121138058 Score: 464
Period size: 179 Copynumber: 2.0 Consensus size: 180
121137697 CAATTCCTGC
* * * *
121137707 TTTTCAATTTCTGCTTTTTAATTTCTG-CTTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGT
1 TTTTCAATTCCTGCTTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
121137771 TGAGCCTTAGGAT-AC-GCTGAGGTATTTTCA-ATTC-CTGTTTTTTCAATCTATATTTTTCAAA
66 TGAGCC-TAGGATCACAGCTGAGGTATTTTCAGATTCACTGTTTTTTCAATCTATATTTTTC--A
* * **
121137832 AAAATCAACTCATACTGCGAGAAATGAGTTGAGCCTCAGGGCATGCTGAGGAA
128 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACACTGAGGAA
121137885 TTTTCAATTCCTGCTTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
1 TTTTCAATTCCTGCTTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
* * * * * * *
121137950 TGAGCCTCGGCTCACATGCTGAGGTATTTTCAGTTTCAGTTTTTTTTTTAATTTATATTTTTCAA
66 TGAGCCTAGGATCACA-GCTGAGGTATTTTCAGATTCA-CTGTTTTTTCAATCTATATTTTTCAA
*
121138015 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGTCACA
129 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGG-CACA
121138059 TGTCGAGGTA
Statistics
Matches: 150, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
178 29 0.19
179 43 0.29
181 18 0.12
182 40 0.27
184 20 0.13
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (180 bp):
TTTTCAATTCCTGCTTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
TGAGCCTAGGATCACAGCTGAGGTATTTTCAGATTCACTGTTTTTTCAATCTATATTTTTCAAAA
ATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACACTGAGGAA
Found at i:121137904 original size:14 final size:14
Alignment explanation
Indices: 121137885--121137919 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
121137875 TGCTGAGGAA
121137885 TTTTCAATTCCTGC
1 TTTTCAATTCCTGC
* *
121137899 TTTTCAATTTCTGT
1 TTTTCAATTCCTGC
121137913 TTTTCAA
1 TTTTCAA
121137920 AAAAATCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTCCTGC
Found at i:121137949 original size:89 final size:89
Alignment explanation
Indices: 121137707--121138075 Score: 388
Period size: 90 Copynumber: 4.1 Consensus size: 89
121137697 CAATTCCTGC
* * * ** *
121137707 TTTTCAATTTCTGCTTTTTAATTTCT-GCTTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGT
1 TTTTCAATTCCTGCTTTTCAATTTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
* * *
121137771 TGAGCCTTAGGATACGCTGAGGTA
66 TGAGCCTCAGGACATGCTGAGGTA
* * * **
121137795 TTTTCAATTCCTGTTTTTTCAATCTATATTTTTCAAAAAAATCAACTCATACTGCGAGAAATGAG
1 TTTTCAATTCCTG-CTTTTCAATTTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
* *
121137860 TTGAGCCTCAGGGCATGCTGAGGAA
65 TTGAGCCTCAGGACATGCTGAGGTA
* *
121137885 TTTTCAATTCCTGCTTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
1 TTTTCAATTCCTGCTTTTCAATTTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
121137950 TGAGCCTC-GGCTCACATGCTGAGGTA
66 TGAGCCTCAGG---ACATGCTGAGGTA
* * ** *
121137976 TTTTCAGTTTCAGTTTTTTTTTTAATTTATATTTTTC--AAAAATCAACTCATATTGCGAGAGGT
1 TTTTCA-ATTC---CTGCTTTTCAATTTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGT
*
121138039 GAGTTGAGCCTCGGGTCACATG-TCGAGGTA
62 GAGTTGAGCCTCAGG--ACATGCT-GAGGTA
121138069 TTTTCAA
1 TTTTCAA
121138076 AATCTGCTTT
Statistics
Matches: 237, Mismatches: 33, Indels: 18
0.82 0.11 0.06
Matches are distributed among these distances:
88 14 0.06
89 62 0.26
90 64 0.27
91 17 0.07
92 4 0.02
93 57 0.24
94 2 0.01
95 17 0.07
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (89 bp):
TTTTCAATTCCTGCTTTTCAATTTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
TGAGCCTCAGGACATGCTGAGGTA
Found at i:121139369 original size:33 final size:33
Alignment explanation
Indices: 121139327--121139392 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
121139317 TAAAAAAAAG
*
121139327 AAAAAATTTACCTTTTCAGCCACCGTGTACGGT
1 AAAAAATTTACCTTTCCAGCCACCGTGTACGGT
121139360 AAAAAATTTACCTTTCCAGCCACCGTGTACGGT
1 AAAAAATTTACCTTTCCAGCCACCGTGTACGGT
121139393 GGCCGGCACC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (33 bp):
AAAAAATTTACCTTTCCAGCCACCGTGTACGGT
Found at i:121140007 original size:24 final size:25
Alignment explanation
Indices: 121139957--121140020 Score: 62
Period size: 24 Copynumber: 2.7 Consensus size: 25
121139947 TTATTTCTAA
*
121139957 TATT-ATTTATATTATTCTCATGAT
1 TATTCATTTTTATTATTCTCATGAT
* * *
121139981 TA-TCATTTTTATTATTGTTATGTT
1 TATTCATTTTTATTATTCTCATGAT
*
121140005 TATTC-CTTTTATTATT
1 TATTCATTTTTATTATT
121140021 TATTATTAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
23 1 0.03
24 30 0.91
25 2 0.06
ACGTcount: A:0.23, C:0.08, G:0.05, T:0.64
Consensus pattern (25 bp):
TATTCATTTTTATTATTCTCATGAT
Found at i:121140187 original size:2 final size:2
Alignment explanation
Indices: 121140175--121140204 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
121140165 ATTCTAACAC
121140175 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121140205 TTTCATACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:121147389 original size:40 final size:40
Alignment explanation
Indices: 121147330--121147535 Score: 232
Period size: 40 Copynumber: 5.2 Consensus size: 40
121147320 CAATTGAATG
* * * * *
121147330 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * * * *
121147370 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * *
121147410 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * *
121147450 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * * *
121147490 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
121147530 ATATCC
1 ATATCC
121147536 AGTTGTATTC
Statistics
Matches: 140, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
Found at i:121149063 original size:27 final size:27
Alignment explanation
Indices: 121148990--121149063 Score: 73
Period size: 27 Copynumber: 2.9 Consensus size: 27
121148980 TATTAAAATG
* **
121148990 GTTTGAAATAAATAACGTAT-AAATTA
1 GTTTGAAATAAATAATGTATAAAAGAA
* * *
121149016 -TCT-AAATAAATAATATGTAAAAGAA
1 GTTTGAAATAAATAATGTATAAAAGAA
121149041 GTTTGAAATAAATAATGTATAAA
1 GTTTGAAATAAATAATGTATAAA
121149064 CCGTTTAAAT
Statistics
Matches: 36, Mismatches: 9, Indels: 5
0.72 0.18 0.10
Matches are distributed among these distances:
24 12 0.33
25 6 0.17
26 2 0.06
27 16 0.44
ACGTcount: A:0.54, C:0.03, G:0.11, T:0.32
Consensus pattern (27 bp):
GTTTGAAATAAATAATGTATAAAAGAA
Found at i:121160927 original size:33 final size:33
Alignment explanation
Indices: 121160885--121160952 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
121160875 GCCATATCCA
*
121160885 TCAAGCTCCTATTCTTTCTTTCACTTAGACCAT
1 TCAAGCTCCTATTCTTTCTTTCACTTACACCAT
121160918 TCAAGCTCCTATTCTTTCTTTCACTTACACCAT
1 TCAAGCTCCTATTCTTTCTTTCACTTACACCAT
121160951 TC
1 TC
121160953 TATTGAGGTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.21, C:0.32, G:0.04, T:0.43
Consensus pattern (33 bp):
TCAAGCTCCTATTCTTTCTTTCACTTACACCAT
Found at i:121176630 original size:27 final size:27
Alignment explanation
Indices: 121176590--121176731 Score: 164
Period size: 27 Copynumber: 5.2 Consensus size: 27
121176580 GTGACGAAGT
*
121176590 CACCAGATACAGATAATCGTGGCATAGC
1 CACCAGA-ATAGATAATCGTGGCATAGC
*
121176618 CACCAGAATAGATATAT-GTGGCAGAGC
1 CACCAGAATAGATA-ATCGTGGCATAGC
121176645 CACCAG-ATCAGATAATCGTGGCATAGC
1 CACCAGAAT-AGATAATCGTGGCATAGC
* * *
121176672 CACCAGAACAGATAATTGTGGCAGAGC
1 CACCAGAATAGATAATCGTGGCATAGC
* *
121176699 CACTAG-ATCAGATAATTGTGGCATAGC
1 CACCAGAAT-AGATAATCGTGGCATAGC
121176726 CACCAG
1 CACCAG
121176732 GACGCTTCCT
Statistics
Matches: 99, Mismatches: 10, Indels: 11
0.82 0.08 0.09
Matches are distributed among these distances:
26 5 0.05
27 84 0.85
28 10 0.10
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CACCAGAATAGATAATCGTGGCATAGC
Found at i:121176657 original size:54 final size:54
Alignment explanation
Indices: 121176590--121176731 Score: 232
Period size: 54 Copynumber: 2.6 Consensus size: 54
121176580 GTGACGAAGT
*
121176590 CACCAGATACAGATAATCGTGGCATAGCCACCAGAATAGAT-ATATGTGGCAGAGC
1 CACCAGAT-CAGATAATCGTGGCATAGCCACCAGAACAGATAAT-TGTGGCAGAGC
121176645 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATAATTGTGGCAGAGC
1 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATAATTGTGGCAGAGC
* *
121176699 CACTAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATCGTGGCATAGCCACCAG
121176732 GACGCTTCCT
Statistics
Matches: 83, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
54 73 0.88
55 10 0.12
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATAATTGTGGCAGAGC
Found at i:121177726 original size:24 final size:24
Alignment explanation
Indices: 121177694--121177764 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
121177684 CTGTCAGGAG
121177694 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
121177718 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
121177742 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
121177765 GGAAATATAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:121177776 original size:48 final size:48
Alignment explanation
Indices: 121177694--121177787 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
121177684 CTGTCAGGAG
** * *
121177694 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-AGGATATAGGAGCTGATCAAGGGAT
121177742 AGGATTTAGGAGCAGATAAGGG-AGGAAATATAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATATAGGAGCTGATCAAGG
121177788 AACAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.82
49 4 0.10
ACGTcount: A:0.36, C:0.03, G:0.37, T:0.23
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATATAGGAGCTGATCAAGGGAT
Found at i:121179223 original size:27 final size:26
Alignment explanation
Indices: 121179183--121179294 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
121179173 AGGAAGCGTC
*
121179183 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
121179210 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
121179237 CTAGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
121179265 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
121179291 CTGG
1 CTGG
121179295 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 50 0.69
28 15 0.21
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:121180378 original size:11 final size:10
Alignment explanation
Indices: 121180350--121180384 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
121180340 AGCCTGTAAG
121180350 TATTCTGAAT
1 TATTCTGAAT
*
121180360 TTTTCTGAAT
1 TATTCTGAAT
121180370 ATATTCTGAAT
1 -TATTCTGAAT
121180381 TATT
1 TATT
121180385 TGTCTGTACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.54
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:121182059 original size:34 final size:34
Alignment explanation
Indices: 121182021--121182156 Score: 118
Period size: 35 Copynumber: 3.9 Consensus size: 34
121182011 TCATATGGAA
* *
121182021 ATATAATCTTCAAT-GATATGTAATCTTAGATATG
1 ATATAATCTTAAATAGAT-TGCAATCTTAGATATG
121182055 ATATAATCTTAAATAGATTGCAATCTTAGATATG
1 ATATAATCTTAAATAGATTGCAATCTTAGATATG
* *
121182089 AT-TGCAATCTTAGATATGA-TACAATCTTAGATATG
1 ATAT--AATCTTAAATA-GATTGCAATCTTAGATATG
* *
121182124 AT-TGCAATCTTAGATATGATATACAATCTTAGA
1 ATAT--AATCTTAAATA-GAT-TGCAATCTTAGA
121182157 AGATATGATT
Statistics
Matches: 92, Mismatches: 4, Indels: 9
0.88 0.04 0.09
Matches are distributed among these distances:
33 1 0.01
34 30 0.33
35 47 0.51
36 2 0.02
37 12 0.13
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.38
Consensus pattern (34 bp):
ATATAATCTTAAATAGATTGCAATCTTAGATATG
Found at i:121182093 original size:18 final size:18
Alignment explanation
Indices: 121182042--121182156 Score: 157
Period size: 18 Copynumber: 6.5 Consensus size: 18
121182032 AATGATATGT
121182042 AATCTTAGATATGATAT--
1 AATCTTAGATATGAT-TGC
*
121182059 AATCTTAAATA-GATTGC
1 AATCTTAGATATGATTGC
121182076 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTGC
*
121182094 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTGC
121182111 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTGC
*
121182129 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TGC
121182148 AATCTTAGA
1 AATCTTAGA
121182157 AGATATGATT
Statistics
Matches: 88, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
15 1 0.01
16 3 0.03
17 36 0.41
18 37 0.42
19 11 0.12
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTGC
Found at i:121182114 original size:35 final size:35
Alignment explanation
Indices: 121182042--121182156 Score: 155
Period size: 35 Copynumber: 3.3 Consensus size: 35
121182032 AATGATATGT
* *
121182042 AATCTTAGATATGATAT--AATCTTAAATA-GATTGC
1 AATCTTAGATATGAT-TGCAATCTTAGATATGA-TAC
121182076 AATCTTAGATATGATTGCAATCTTAGATATGATAC
1 AATCTTAGATATGATTGCAATCTTAGATATGATAC
121182111 AATCTTAGATATGATTGCAATCTTAGATATGATATAC
1 AATCTTAGATATGATTGCAATCTTAGATATG--ATAC
121182148 AATCTTAGA
1 AATCTTAGA
121182157 AGATATGATT
Statistics
Matches: 74, Mismatches: 2, Indels: 7
0.89 0.02 0.08
Matches are distributed among these distances:
33 1 0.01
34 15 0.20
35 43 0.58
36 2 0.03
37 13 0.18
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.37
Consensus pattern (35 bp):
AATCTTAGATATGATTGCAATCTTAGATATGATAC
Found at i:121182650 original size:17 final size:17
Alignment explanation
Indices: 121182630--121182695 Score: 66
Period size: 17 Copynumber: 3.9 Consensus size: 17
121182620 TTCTAAACCA
*
121182630 ATATATTTTATATTTTT
1 ATATATATTATATTTTT
*
121182647 ATATA-ATTATTATTCTT
1 ATATATATTA-TATTTTT
*
121182664 ATAAATA-TAT-TTTTT
1 ATATATATTATATTTTT
121182679 ATTATATATTATATTTT
1 A-TATATATTATATTTT
121182696 AAATTTATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
15 5 0.13
16 9 0.23
17 20 0.51
18 5 0.13
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
ATATATATTATATTTTT
Found at i:121182720 original size:26 final size:26
Alignment explanation
Indices: 121182672--121182721 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
121182662 TTATAAATAT
* * * *
121182672 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
121182698 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
121182722 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:121188017 original size:16 final size:15
Alignment explanation
Indices: 121187992--121188051 Score: 68
Period size: 16 Copynumber: 3.9 Consensus size: 15
121187982 CTTCTATTTC
*
121187992 AAAAAAAAAAGAAAAG
1 AAAAAGAAAA-AAAAG
121188008 AAAAAGAAAAAAAGAG
1 AAAAAGAAAAAAA-AG
*
121188024 AAAAA-AAAAAAGAG
1 AAAAAGAAAAAAAAG
121188038 AAAATAGAAAAAAA
1 AAAA-AGAAAAAAA
121188052 TGGAGAGGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
14 6 0.16
15 10 0.26
16 22 0.58
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (15 bp):
AAAAAGAAAAAAAAG
Found at i:121188019 original size:19 final size:19
Alignment explanation
Indices: 121187995--121188051 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
121187985 CTATTTCAAA
121187995 AAAAAAAGA-AAAGAAAAAG
1 AAAAAAAGAGAAA-AAAAAG
*
121188014 AAAAAAAGAGAAAAAAAAA
1 AAAAAAAGAGAAAAAAAAG
*
121188033 AAGAGAAAATAGAAAAAAA
1 AA-A-AAAAGAGAAAAAAA
121188052 TGGAGAGGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.48
20 4 0.12
21 13 0.39
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (19 bp):
AAAAAAAGAGAAAAAAAAG
Found at i:121188049 original size:22 final size:22
Alignment explanation
Indices: 121187993--121188051 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 22
121187983 TTCTATTTCA
* *
121187993 AAAAAAAAAG-AAAAGAAAAAG
1 AAAAAAAGAGAAAAAAAAAAAG
121188014 AAAAAAAGAGAAAAAAAAAAAG
1 AAAAAAAGAGAAAAAAAAAAAG
* *
121188036 -AGAAAATAGAAAAAAA
1 AAAAAAAGAGAAAAAAA
121188052 TGGAGAGGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 23 0.70
22 10 0.30
ACGTcount: A:0.85, C:0.00, G:0.14, T:0.02
Consensus pattern (22 bp):
AAAAAAAGAGAAAAAAAAAAAG
Found at i:121189064 original size:44 final size:44
Alignment explanation
Indices: 121188920--121189099 Score: 177
Period size: 44 Copynumber: 4.1 Consensus size: 44
121188910 CAAAGAAACA
* ** *
121188920 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATTGAAGATAGC
* * * * * * * **
121188964 AGATCTGACATTCTTGTGCTTACAGCGAAGCAGATTGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATTGAAGATAGC
121189009 AGCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TTGAAGATAGC
* *
121189052 AGATTTGGCATCCCTGTGTTTATAGAGAACATATTGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATTGAAGATAGC
121189096 AGAT
1 AGAT
121189100 CTAACCTTCA
Statistics
Matches: 108, Mismatches: 22, Indels: 12
0.76 0.15 0.08
Matches are distributed among these distances:
42 2 0.02
43 13 0.12
44 79 0.73
45 13 0.12
46 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATTGAAGATAGC
Found at i:121189299 original size:119 final size:119
Alignment explanation
Indices: 121189088--121189565 Score: 812
Period size: 119 Copynumber: 4.0 Consensus size: 119
121189078 GAACATATTG
* *
121189088 AAGATAGCAGATCTAACCTTCAAATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
121189153 TGTTTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCA
121189207 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
*
121189272 TGTTTACAAGGAACAAATTGAGGACATAGTAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCA
* *
121189326 AATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
* *
121189391 TGTTTACAAGGAACAAACCGAAGACATAGTAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCA
* * *
121189445 AATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
* * * * * *
121189510 TGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCA
121189564 AA
1 AA
121189566 CAGACTCAAG
Statistics
Matches: 340, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 340 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
TGTTTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCA
Found at i:121189613 original size:82 final size:83
Alignment explanation
Indices: 121189489--121189757 Score: 441
Period size: 82 Copynumber: 3.2 Consensus size: 83
121189479 GAAGCAGATC
*
121189489 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCA
121189554 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
121189572 CAAGATGGTTTGGCATCCTTG-GCTTACAAGGAACAAATCGAGGACCCTGCAGACATGACTTTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCA
121189636 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
121189654 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAAGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTC
121189719 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* *
121189738 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
121189758 ACAAATCGAA
Statistics
Matches: 172, Mismatches: 12, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
82 68 0.40
83 39 0.23
84 65 0.38
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:121190214 original size:19 final size:19
Alignment explanation
Indices: 121190143--121190237 Score: 137
Period size: 19 Copynumber: 5.3 Consensus size: 19
121190133 GGAAATATAA
*
121190143 TTAGATATGAT-T-GAATC
1 TTAGATATGATATACAATC
121190160 TTAGATATG--ATACAATC
1 TTAGATATGATATACAATC
*
121190177 TTAGATATGAT-TGCAATC
1 TTAGATATGATATACAATC
121190195 TTAGATATGATATACAATC
1 TTAGATATGATATACAATC
121190214 TTAGATATGATATACAATC
1 TTAGATATGATATACAATC
121190233 TTAGA
1 TTAGA
121190238 AGATATGATT
Statistics
Matches: 70, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
16 1 0.01
17 22 0.31
18 17 0.24
19 30 0.43
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
TTAGATATGATATACAATC
Found at i:121190219 original size:37 final size:35
Alignment explanation
Indices: 121190143--121190237 Score: 147
Period size: 37 Copynumber: 2.7 Consensus size: 35
121190133 GGAAATATAA
121190143 TTAGATATGATTG-AATCTTAGATATGATACAATC
1 TTAGATATGATTGCAATCTTAGATATGATACAATC
121190177 TTAGATATGATTGCAATCTTAGATATGATATACAATC
1 TTAGATATGATTGCAATCTTAGATATG--ATACAATC
*
121190214 TTAGATATGATATACAATCTTAGA
1 TTAGATATGAT-TGCAATCTTAGA
121190238 AGATATGATT
Statistics
Matches: 56, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
34 13 0.23
35 13 0.23
37 19 0.34
38 11 0.20
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (35 bp):
TTAGATATGATTGCAATCTTAGATATGATACAATC
Found at i:121190744 original size:18 final size:17
Alignment explanation
Indices: 121190720--121190779 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
121190710 CCAATATATT
121190720 TTATATTTTTTATATAA
1 TTATATTTTTTATATAA
*
121190737 TTAT-TATTCTTATA-AA
1 TTATAT-TTTTTATATAA
121190753 -TATATTTTTTATTATATA
1 TTATATTTTTTA-TATA-A
121190771 TTATATTTT
1 TTATATTTT
121190780 AAATTTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
15 8 0.23
16 6 0.17
17 12 0.34
18 1 0.03
19 8 0.23
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATATTTTTTATATAA
Found at i:121190764 original size:15 final size:16
Alignment explanation
Indices: 121190721--121190779 Score: 59
Period size: 16 Copynumber: 3.5 Consensus size: 16
121190711 CAATATATTT
121190721 TATATTTTTTATATAA
1 TATATTTTTTATATAA
121190737 T-TATTATTCTTATA-AA
1 TATATT-TT-TTATATAA
121190753 TATATTTTTTATTATATA
1 TATATTTTTTA-TATA-A
121190771 TTATATTTT
1 -TATATTTT
121190780 AAATTTATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
15 7 0.19
16 10 0.28
17 10 0.28
18 1 0.03
19 8 0.22
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (16 bp):
TATATTTTTTATATAA
Found at i:121190804 original size:26 final size:26
Alignment explanation
Indices: 121190756--121190805 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
121190746 TTATAAATAT
* * * *
121190756 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
121190782 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
121190806 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:121196110 original size:12 final size:11
Alignment explanation
Indices: 121196084--121196141 Score: 71
Period size: 11 Copynumber: 4.9 Consensus size: 11
121196074 CTTCTATTTC
121196084 AAAAAAAAAAG
1 AAAAAAAAAAG
*
121196095 AAAAGAAAAAG
1 AAAAAAAAAAG
121196106 AAAAAAAAAGAG
1 AAAAAAAAA-AG
121196118 AAAAAAATAAAG
1 AAAAAAA-AAAG
121196130 AGAAAAAGAAAA
1 A-AAAAA-AAAA
121196142 AATGGAGAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
11 18 0.44
12 12 0.29
13 10 0.24
14 1 0.02
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:121197153 original size:44 final size:44
Alignment explanation
Indices: 121197009--121197188 Score: 177
Period size: 44 Copynumber: 4.1 Consensus size: 44
121196999 CAAAGAAACA
* ** *
121197009 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATTGAAGATAGC
* * * * * * * **
121197053 AGATCTGACATTCTTGTGCTTACAGCGAAGCAGATTGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATTGAAGATAGC
121197098 AGCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TTGAAGATAGC
**
121197141 AGATTTGGCATCCCTGTGTTTATAGGGAACTTATTGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATTGAAGATAGC
121197185 AGAT
1 AGAT
121197189 CTAACCTTCA
Statistics
Matches: 108, Mismatches: 22, Indels: 12
0.76 0.15 0.08
Matches are distributed among these distances:
42 2 0.02
43 13 0.12
44 79 0.73
45 13 0.12
46 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATTGAAGATAGC
Found at i:121197387 original size:119 final size:119
Alignment explanation
Indices: 121197177--121197653 Score: 821
Period size: 119 Copynumber: 4.0 Consensus size: 119
121197167 GAACTTATTG
*
121197177 AAGATAGCAGATCTAACCTTCA-ATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
*
121197241 TGTTTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
121197295 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
*
121197360 TGTTTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* *
121197414 AATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
*
121197479 TGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* * *
121197533 AATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
* * * * *
121197598 TGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
121197652 AA
1 AA
121197654 CAGACTCAAG
Statistics
Matches: 344, Mismatches: 14, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
118 22 0.06
119 322 0.94
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
Found at i:121197682 original size:83 final size:83
Alignment explanation
Indices: 121197577--121197935 Score: 549
Period size: 83 Copynumber: 4.2 Consensus size: 83
121197567 GAAGCAGATC
121197577 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
121197642 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
121197660 CAAGATGGTTTGGCATCCTTGTGCCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATAT
1 CAAGATGGTTTGGCA------T--CCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATAT
121197725 GACTCTCAAATGTTCTCAAACAGACT
58 GACTCTCAAATGTTCTCAAACAGACT
** *
121197751 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCCTGCAGACATGACT-TCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
121197815 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * *
121197833 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAGTCGAAGACCTTGCAGATATGATTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
*
121197898 AATATTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* *
121197916 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
121197936 ACAAATCGAA
Statistics
Matches: 256, Mismatches: 11, Indels: 18
0.90 0.04 0.06
Matches are distributed among these distances:
82 77 0.30
83 95 0.37
85 1 0.00
89 1 0.00
91 82 0.32
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:121198342 original size:14 final size:15
Alignment explanation
Indices: 121198323--121198432 Score: 78
Period size: 17 Copynumber: 6.5 Consensus size: 15
121198313 AATCTTCAAT
121198323 GATATG-CAATCTTA
1 GATATGACAATCTTA
121198337 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
*
121198354 GATATGATTGAAATCTTA
1 GATATGA---CAATCTTA
121198372 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
121198389 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
121198407 GATATGATATACAATCTTA
1 GATATG----ACAATCTTA
121198426 GATATGA
1 GATATGA
121198433 TATACAATCT
Statistics
Matches: 79, Mismatches: 2, Indels: 29
0.72 0.02 0.26
Matches are distributed among these distances:
14 6 0.08
15 3 0.04
17 27 0.34
18 27 0.34
19 14 0.18
20 1 0.01
22 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:121198345 original size:19 final size:19
Alignment explanation
Indices: 121198321--121198446 Score: 183
Period size: 19 Copynumber: 6.9 Consensus size: 19
121198311 ATAATCTTCA
121198321 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
121198340 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
121198357 ATGAT-TGAAATCTTAGAT
1 ATGATATGCAATCTTAGAT
121198375 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
121198392 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
121198410 ATGATATACAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
121198429 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
121198447 AGATATGATT
Statistics
Matches: 98, Mismatches: 3, Indels: 12
0.87 0.03 0.11
Matches are distributed among these distances:
17 31 0.32
18 31 0.32
19 36 0.37
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:121198370 original size:35 final size:36
Alignment explanation
Indices: 121198321--121198446 Score: 186
Period size: 35 Copynumber: 3.5 Consensus size: 36
121198311 ATAATCTTCA
*
121198321 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATATGAAATCTTAGATATGATACAATCTTAGAT
121198357 ATGAT-TGAAATCTTAGATATGATACAATCTTAGAT
1 ATGATATGAAATCTTAGATATGATACAATCTTAGAT
*
121198392 ATGAT-TGCAATCTTAGATATGATATACAATCTTAGAT
1 ATGATATGAAATCTTAGATATG--ATACAATCTTAGAT
121198429 ATGATAT-ACAATCTTAGA
1 ATGATATGA-AATCTTAGA
121198447 AGATATGATT
Statistics
Matches: 83, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
35 49 0.59
36 5 0.06
37 19 0.23
38 10 0.12
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (36 bp):
ATGATATGAAATCTTAGATATGATACAATCTTAGAT
Found at i:121198941 original size:17 final size:17
Alignment explanation
Indices: 121198921--121198986 Score: 66
Period size: 17 Copynumber: 3.9 Consensus size: 17
121198911 TTCTAAACCA
*
121198921 ATATATTTTATATTTTT
1 ATATATATTATATTTTT
*
121198938 ATATA-ATTATTATTCTT
1 ATATATATTA-TATTTTT
*
121198955 ATAAATA-TAT-TTTTT
1 ATATATATTATATTTTT
121198970 ATTATATATTATATTTT
1 A-TATATATTATATTTT
121198987 AAATTTATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
15 5 0.13
16 9 0.23
17 20 0.51
18 5 0.13
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
ATATATATTATATTTTT
Found at i:121199011 original size:26 final size:26
Alignment explanation
Indices: 121198963--121199012 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
121198953 TTATAAATAT
* * * *
121198963 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
121198989 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
121199013 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:121203924 original size:24 final size:24
Alignment explanation
Indices: 121203892--121203962 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
121203882 CTGTCAAGAG
121203892 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
121203916 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
121203940 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
121203963 GGAAATATAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:121203974 original size:48 final size:48
Alignment explanation
Indices: 121203892--121203985 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
121203882 CTGTCAAGAG
** * *
121203892 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-AGGATATAGGAGCTGATCAAGGGAT
121203940 AGGATTTAGGAGCAGATAAGGG-AGGAAATATAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATATAGGAGCTGATCAAGG
121203986 AACAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.82
49 4 0.10
ACGTcount: A:0.36, C:0.03, G:0.37, T:0.23
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATATAGGAGCTGATCAAGGGAT
Found at i:121205412 original size:27 final size:26
Alignment explanation
Indices: 121205372--121205483 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
121205362 AGGAAGCGTC
* *
121205372 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCAC-ATTATCTGAT
* *
121205399 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACAT-TATCTGAT
*
121205426 CTGGTGATTCTGCCACGATTATCTGTAT
1 CTGGTGACTCTGCCAC-ATTATCTG-AT
** *
121205454 CTGGTGACTCTATCACATTATCTGTT
1 CTGGTGACTCTGCCACATTATCTGAT
121205480 CTGG
1 CTGG
121205484 CAACCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 50 0.68
28 16 0.22
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
CTGGTGACTCTGCCACATTATCTGAT
Found at i:121207478 original size:26 final size:25
Alignment explanation
Indices: 121207448--121207529 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 25
121207438 TGGAATTCCC
121207448 ATCATGGAACATTTACCTAACCCATT
1 ATCAT-GAACATTTACCTAACCCATT
*
121207474 ATCATCGAACATTTACCTAACCTATT
1 ATCAT-GAACATTTACCTAACCCATT
121207500 ATCATGAGACATTTACCTAACCCATT
1 ATCATGA-ACATTTACCTAACCCATT
121207526 ATCA
1 ATCA
121207530 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
25 2 0.04
26 50 0.96
ACGTcount: A:0.35, C:0.27, G:0.06, T:0.32
Consensus pattern (25 bp):
ATCATGAACATTTACCTAACCCATT
Found at i:121209480 original size:17 final size:17
Alignment explanation
Indices: 121209460--121209558 Score: 135
Period size: 17 Copynumber: 5.6 Consensus size: 17
121209450 CAATGATATG
121209460 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
* *
121209477 CAATCTTAGATATAATTG
1 CAATCTTAGATATGA-TA
121209495 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
121209512 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
121209530 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
121209549 CAATCTTAGA
1 CAATCTTAGA
121209559 AGATATGATT
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
17 30 0.42
18 30 0.42
19 11 0.15
20 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:121209498 original size:35 final size:35
Alignment explanation
Indices: 121209458--121209558 Score: 175
Period size: 35 Copynumber: 2.8 Consensus size: 35
121209448 TTCAATGATA
121209458 TGCAATCTTAGATATGATACAATCTTAGATATAAT
1 TGCAATCTTAGATATGATACAATCTTAGATATAAT
*
121209493 TGCAATCTTAGATATGATACAATCTTAGATATGAT
1 TGCAATCTTAGATATGATACAATCTTAGATATAAT
121209528 TGCAATCTTAGATATGATATACAATCTTAGA
1 TGCAATCTTAGATATG--ATACAATCTTAGA
121209559 AGATATGATT
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
35 50 0.79
37 13 0.21
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.37
Consensus pattern (35 bp):
TGCAATCTTAGATATGATACAATCTTAGATATAAT
Found at i:121209500 original size:18 final size:18
Alignment explanation
Indices: 121209460--121209558 Score: 148
Period size: 18 Copynumber: 5.6 Consensus size: 18
121209450 CAATGATATG
121209460 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
* *
121209477 CAATCTTAGATATAATTG
1 CAATCTTAGATATGATTA
121209495 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
121209512 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
121209530 CAATCTTAGATATGATATA
1 CAATCTTAGATATGAT-TA
121209549 CAATCTTAGA
1 CAATCTTAGA
121209559 AGATATGATT
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
17 30 0.41
18 32 0.44
19 11 0.15
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:121209878 original size:12 final size:11
Alignment explanation
Indices: 121209863--121209896 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
121209853 TATTTTTAAT
121209863 TTATTATATATA
1 TTATT-TATATA
121209875 TTATTTATTATA
1 TTATTTA-TATA
121209887 TTATTTATAT
1 TTATTTATAT
121209897 TTTCAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTTATATA
Found at i:121209888 original size:21 final size:21
Alignment explanation
Indices: 121209864--121209972 Score: 61
Period size: 21 Copynumber: 5.3 Consensus size: 21
121209854 ATTTTTAATT
121209864 TATTATATATATTATTTATTA
1 TATTATATATATTATTTATTA
* *
121209885 TATTATTTATATT-TTCA--A
1 TATTATATATATTATTTATTA
* * *
121209903 AATT-TGTAAATTA-TTATTA
1 TATTATATATATTATTTATTA
* *
121209922 TA-TATTATATTTTAACTTATATA
1 TATTA-TATATATT-ATTTAT-TA
*
121209945 TCTTATATAT-TTATTTATTTA
1 TATTATATATATTATTTA-TTA
121209966 TATTATA
1 TATTATA
121209973 CATTATTTTA
Statistics
Matches: 65, Mismatches: 13, Indels: 20
0.66 0.13 0.20
Matches are distributed among these distances:
17 8 0.12
18 5 0.08
19 2 0.03
20 8 0.12
21 25 0.38
22 7 0.11
23 8 0.12
24 2 0.03
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.60
Consensus pattern (21 bp):
TATTATATATATTATTTATTA
Found at i:121209894 original size:16 final size:16
Alignment explanation
Indices: 121209861--121209891 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
121209851 CTTATTTTTA
121209861 ATTTATTATATATATT
1 ATTTATTATATATATT
121209877 ATTTATTATAT-TATT
1 ATTTATTATATATATT
121209892 TATATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATTATATATATT
Found at i:121209929 original size:7 final size:7
Alignment explanation
Indices: 121209912--121210018 Score: 50
Period size: 7 Copynumber: 15.7 Consensus size: 7
121209902 AAATTTGTAA
121209912 ATTAT-T
1 ATTATAT
121209918 ATTATAT
1 ATTATAT
121209925 ATTATAT
1 ATTATAT
121209932 -TT-TA-
1 ATTATAT
121209936 ACTTATAT
1 A-TTATAT
121209944 ATCTTATAT
1 A--TTATAT
*
121209953 ATTTATTT
1 A-TTATAT
121209961 ATT-TAT
1 ATTATAT
*
121209967 ATTATAC
1 ATTATAT
121209974 ATTAT-T
1 ATTATAT
* *
121209980 -TTAAAA
1 ATTATAT
*
121209986 ACTTACAT
1 A-TTATAT
*
121209994 -TTTTAT
1 ATTATAT
121210000 ATTATAT
1 ATTATAT
*
121210007 ATTATAA
1 ATTATAT
121210014 ATTAT
1 ATTAT
121210019 TTCATTTATT
Statistics
Matches: 77, Mismatches: 13, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
5 5 0.06
6 18 0.23
7 35 0.45
8 11 0.14
9 8 0.10
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTATAT
Found at i:121210357 original size:3 final size:3
Alignment explanation
Indices: 121210349--121210383 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
121210339 TATGTTACTA
*
121210349 TAT TAT TAT TAT TAT TAT TAT TTT TAT ATAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT T
121210384 GTATTTGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:121221233 original size:30 final size:31
Alignment explanation
Indices: 121221199--121221267 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 31
121221189 TGGCCCAATA
*
121221199 CCCACACGCCCGTATGACATGCCCGTGT-GT
1 CCCACACGCCCGTATGACATGCCCGTGTGGG
* * *
121221229 CCCACACGGCCGTATGGCATGCTCGTGTGGG
1 CCCACACGCCCGTATGACATGCCCGTGTGGG
121221260 CCCACACG
1 CCCACACG
121221268 TCCAAATTGG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 25 0.74
31 9 0.26
ACGTcount: A:0.16, C:0.39, G:0.28, T:0.17
Consensus pattern (31 bp):
CCCACACGCCCGTATGACATGCCCGTGTGGG
Found at i:121221929 original size:10 final size:10
Alignment explanation
Indices: 121221914--121221938 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
121221904 GAATTTTTTT
121221914 AAAAAAAATA
1 AAAAAAAATA
121221924 AAAAAAAATA
1 AAAAAAAATA
121221934 AAAAA
1 AAAAA
121221939 TATATCATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:121222600 original size:30 final size:30
Alignment explanation
Indices: 121222566--121222627 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
121222556 ACTTAACAAG
121222566 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* *
121222596 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
121222626 CA
1 CA
121222628 CTAAAATAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.15, G:0.03, T:0.26
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:121226030 original size:31 final size:31
Alignment explanation
Indices: 121225995--121226058 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
121225985 TAACTTTAAA
121225995 AAGGTATTTTTTTATACAAGTTCAAGTTATG
1 AAGGTATTTTTTTATACAAGTTCAAGTTATG
121226026 AAGGTATTTTTTTATACAAGTTCAAGTTATG
1 AAGGTATTTTTTTATACAAGTTCAAGTTATG
121226057 AA
1 AA
121226059 AATATGTCGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.34, C:0.06, G:0.16, T:0.44
Consensus pattern (31 bp):
AAGGTATTTTTTTATACAAGTTCAAGTTATG
Found at i:121230157 original size:2 final size:2
Alignment explanation
Indices: 121230144--121230190 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
121230134 GCAGAGAAAA
*
121230144 AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
121230186 AG AG A
1 AG AG A
121230191 CTTCAATTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:121230502 original size:43 final size:42
Alignment explanation
Indices: 121230378--121230513 Score: 159
Period size: 43 Copynumber: 3.1 Consensus size: 42
121230368 ATTATGGACA
*
121230378 CTAATACTATGTTATAAGATATTATTTATTCACAATTTAATT
1 CTAATAGTATGTTATAAGATATTATTTATTCACAATTTAATT
* * *
121230420 CGTAATAGGATATTATTATAGATATTATCTT-TT-AGCAATTTGATTT
1 C-TAATAGTATGTTA-TA-AGATATTAT-TTATTCA-CAATTT-AATT
121230466 CTAATAGTATGTTATAAGATATTATTTATTCACAATTTAATT
1 CTAATAGTATGTTATAAGATATTATTTATTCACAATTTAATT
121230508 CGTAAT
1 C-TAAT
121230514 GGGATATTAT
Statistics
Matches: 78, Mismatches: 7, Indels: 17
0.76 0.07 0.17
Matches are distributed among these distances:
42 7 0.09
43 31 0.40
44 6 0.08
45 28 0.36
46 6 0.08
ACGTcount: A:0.36, C:0.08, G:0.09, T:0.47
Consensus pattern (42 bp):
CTAATAGTATGTTATAAGATATTATTTATTCACAATTTAATT
Found at i:121233111 original size:15 final size:16
Alignment explanation
Indices: 121233071--121233111 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
121233061 AGAAATATAT
121233071 TTATATATAATGTTAAA
1 TTATATA-AATGTTAAA
*
121233088 -TACATAAAT-TTAAA
1 TTATATAAATGTTAAA
121233102 TTATATAAAT
1 TTATATAAAT
121233112 AATTTCATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
14 5 0.24
15 11 0.52
16 5 0.24
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (16 bp):
TTATATAAATGTTAAA
Found at i:121233942 original size:21 final size:21
Alignment explanation
Indices: 121233906--121233956 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
121233896 CCGTTAATTT
*
121233906 TAATCTCATTACTATAATAAC
1 TAATCTCACTACTATAATAAC
* * *
121233927 TAATCTCACTATTATAGTAAT
1 TAATCTCACTACTATAATAAC
*
121233948 TAATGTCAC
1 TAATCTCAC
121233957 CGCCACCGCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.39, C:0.18, G:0.04, T:0.39
Consensus pattern (21 bp):
TAATCTCACTACTATAATAAC
Found at i:121235416 original size:17 final size:17
Alignment explanation
Indices: 121235394--121235432 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
121235384 ATATTTTTAT
121235394 ATTATTTTTATAATATA
1 ATTATTTTTATAATATA
**
121235411 ATTATTTTTATTTTATA
1 ATTATTTTTATAATATA
121235428 ATTAT
1 ATTAT
121235433 AAATTGATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTATTTTTATAATATA
Found at i:121236041 original size:10 final size:10
Alignment explanation
Indices: 121236011--121236051 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
121236001 ATCACAAGTC
121236011 TTGTGATATA
1 TTGTGATATA
*
121236021 GTGTGATATA
1 TTGTGATATA
121236031 TTGTGATATA
1 TTGTGATATA
*
121236041 TATATGATATA
1 T-TGTGATATA
121236052 CGTAGAAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
10 19 0.70
11 8 0.30
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (10 bp):
TTGTGATATA
Found at i:121244301 original size:8 final size:8
Alignment explanation
Indices: 121244288--121244325 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
121244278 AGATCGGCAC
121244288 AAGCCGAA
1 AAGCCGAA
121244296 AAGCCGAA
1 AAGCCGAA
*
121244304 ATGCCGAA
1 AAGCCGAA
*
121244312 ATGCCGAA
1 AAGCCGAA
121244320 AAGCCG
1 AAGCCG
121244326 GTATTTTGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.42, C:0.26, G:0.26, T:0.05
Consensus pattern (8 bp):
AAGCCGAA
Found at i:121244772 original size:27 final size:26
Alignment explanation
Indices: 121244714--121244847 Score: 155
Period size: 27 Copynumber: 5.0 Consensus size: 26
121244704 AGGAAGCGTC
* * *
121244714 CTGGTGGCTATGCCACAATTTATCTAAT
1 CTGGTGGCTCTGCCAC-ATATATCT-GT
121244742 CTGGTGGCTCTGCCACATATATCTGT
1 CTGGTGGCTCTGCCACATATATCTGT
* *
121244768 CCTGGTGGCTATGCCACA-ATTATTTGAT
1 -CTGGTGGCTCTGCCACATA-TATCTG-T
121244796 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTG-T
121244823 CTGGTGGCTCTGCCACA-ATATCTGT
1 CTGGTGGCTCTGCCACATATATCTGT
121244848 ATCTAGTGAC
Statistics
Matches: 94, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.01
26 9 0.10
27 67 0.71
28 17 0.18
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATATATCTGT
Found at i:121244816 original size:54 final size:54
Alignment explanation
Indices: 121244711--121244845 Score: 218
Period size: 54 Copynumber: 2.5 Consensus size: 54
121244701 TAGAGGAAGC
121244711 GTCCTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAA-TTATCTAATCTGGTGGCTCTGCCACATATATCT
* *
121244766 GTCCTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
* *
121244820 GTTCTGGTGGCTCTGCCACAA-TATCT
1 GTCCTGGTGGCTATGCCACAATTATCT
121244846 GTATCTAGTG
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
53 4 0.05
54 50 0.67
55 21 0.28
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
Found at i:121245942 original size:31 final size:31
Alignment explanation
Indices: 121245907--121246101 Score: 246
Period size: 31 Copynumber: 6.3 Consensus size: 31
121245897 TGGCCCAGTA
* * *
121245907 CCCACACGCCAGCATGGCATGCCCGTGTGGG
1 CCCACACGCCCGTATGGCATGCCCGTGTAGG
* * *
121245938 CCCACACACCTGTATGGCATGCCCGTGTGGG
1 CCCACACGCCCGTATGGCATGCCCGTGTAGG
* * * * * *
121245969 TCTACATGCCCGTATAGCATACCCGTATAGG
1 CCCACACGCCCGTATGGCATGCCCGTGTAGG
* * *
121246000 CCCACACGCCCGTATAGCATGCCCGTATGGG
1 CCCACACGCCCGTATGGCATGCCCGTGTAGG
121246031 CCCACACGCCCGTATGGCATGCCCGTGTAGG
1 CCCACACGCCCGTATGGCATGCCCGTGTAGG
*
121246062 CCTACACGCCCGTATGGCATGCCCGTGTAGG
1 CCCACACGCCCGTATGGCATGCCCGTGTAGG
121246093 CCCACACGC
1 CCCACACGC
121246102 TCAACTTGGC
Statistics
Matches: 142, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 142 1.00
ACGTcount: A:0.18, C:0.37, G:0.27, T:0.17
Consensus pattern (31 bp):
CCCACACGCCCGTATGGCATGCCCGTGTAGG
Found at i:121246013 original size:18 final size:18
Alignment explanation
Indices: 121245990--121246045 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
121245980 GTATAGCATA
121245990 CCCGTATAGGCCCACACG
1 CCCGTATAGGCCCACACG
*
121246008 CCCGTATA-G----CATG
1 CCCGTATAGGCCCACACG
*
121246021 CCCGTATGGGCCCACACG
1 CCCGTATAGGCCCACACG
121246039 CCCGTAT
1 CCCGTAT
121246046 GGCATGCCCG
Statistics
Matches: 30, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
13 10 0.33
14 1 0.03
17 1 0.03
18 18 0.60
ACGTcount: A:0.20, C:0.41, G:0.23, T:0.16
Consensus pattern (18 bp):
CCCGTATAGGCCCACACG
Found at i:121246020 original size:93 final size:93
Alignment explanation
Indices: 121245907--121246101 Score: 282
Period size: 93 Copynumber: 2.1 Consensus size: 93
121245897 TGGCCCAGTA
* * * * *
121245907 CCCACACGCCAGCATGGCATGCCCGTGTGGGCCCACACACCTGTATGGCATGCCCGTGTGGGTCT
1 CCCACACGCCAGCATAGCATGCCCGTATGGGCCCACACACCCGTATGGCATGCCCGTGTAGGCCT
*
121245972 ACATGCCCGTATAGCATACCCGTATAGG
66 ACACGCCCGTATAGCATACCCGTATAGG
* * *
121246000 CCCACACGCCCGTATAGCATGCCCGTATGGGCCCACACGCCCGTATGGCATGCCCGTGTAGGCCT
1 CCCACACGCCAGCATAGCATGCCCGTATGGGCCCACACACCCGTATGGCATGCCCGTGTAGGCCT
* * *
121246065 ACACGCCCGTATGGCATGCCCGTGTAGG
66 ACACGCCCGTATAGCATACCCGTATAGG
121246093 CCCACACGC
1 CCCACACGC
121246102 TCAACTTGGC
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 90 1.00
ACGTcount: A:0.18, C:0.37, G:0.27, T:0.17
Consensus pattern (93 bp):
CCCACACGCCAGCATAGCATGCCCGTATGGGCCCACACACCCGTATGGCATGCCCGTGTAGGCCT
ACACGCCCGTATAGCATACCCGTATAGG
Found at i:121246128 original size:32 final size:32
Alignment explanation
Indices: 121246091--121246164 Score: 121
Period size: 32 Copynumber: 2.3 Consensus size: 32
121246081 TGCCCGTGTA
121246091 GGCCCACACGCTCAACTTGGCCTAGCCTATGT
1 GGCCCACACGCTCAACTTGGCCTAGCCTATGT
* *
121246123 GGCCCACACACTTAACTTGGCCTAGCCTATGT
1 GGCCCACACGCTCAACTTGGCCTAGCCTATGT
*
121246155 AGCCCACACG
1 GGCCCACACG
121246165 GCCACACCCA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.22, C:0.38, G:0.20, T:0.20
Consensus pattern (32 bp):
GGCCCACACGCTCAACTTGGCCTAGCCTATGT
Found at i:121253713 original size:50 final size:50
Alignment explanation
Indices: 121253612--121253706 Score: 120
Period size: 50 Copynumber: 1.9 Consensus size: 50
121253602 AAATATGTTG
* * * *
121253612 TTTTAAATAAATATAAATATTTATTTAATTTGTTTTTTTATATCTACTAT
1 TTTTAAATAAATATAAATATTTATTTAATTTATTTGTTCAGATCTACTAT
* *
121253662 TTTTACATAAATATAAATATTTGTTT-ATATTATTTGTTCAGATCT
1 TTTTAAATAAATATAAATATTTATTTAAT-TTATTTGTTCAGATCT
121253707 TGTATTTACT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
49 2 0.05
50 36 0.95
ACGTcount: A:0.35, C:0.05, G:0.04, T:0.56
Consensus pattern (50 bp):
TTTTAAATAAATATAAATATTTATTTAATTTATTTGTTCAGATCTACTAT
Found at i:121254642 original size:13 final size:13
Alignment explanation
Indices: 121254626--121254652 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
121254616 GTCGATGGAG
121254626 GTGGTGTAACAAC
1 GTGGTGTAACAAC
121254639 GTGGTGTAACAAC
1 GTGGTGTAACAAC
121254652 G
1 G
121254653 CGAAGGACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.33, T:0.22
Consensus pattern (13 bp):
GTGGTGTAACAAC
Found at i:121256827 original size:50 final size:50
Alignment explanation
Indices: 121256744--121256849 Score: 178
Period size: 50 Copynumber: 2.1 Consensus size: 50
121256734 GGGCAACCCA
*
121256744 CACA-GGCTTGTGCCCAGAACGTGTTTAAAAATAGTATATGTGCAGTTTT
1 CACATGGCATGTGCCCAGAACGTGTTTAAAAATAGTATATGTGCAGTTTT
* *
121256793 CACATGGCATGTGCCTAGAACGTGTTTAAAAATAGTATATGTGTAGTTTT
1 CACATGGCATGTGCCCAGAACGTGTTTAAAAATAGTATATGTGCAGTTTT
121256843 CACATGG
1 CACATGG
121256850 GATGACACAC
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
49 4 0.08
50 49 0.92
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (50 bp):
CACATGGCATGTGCCCAGAACGTGTTTAAAAATAGTATATGTGCAGTTTT
Found at i:121261190 original size:13 final size:13
Alignment explanation
Indices: 121261172--121261197 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
121261162 GAGTAATTGT
121261172 ACACGGGCGTGTC
1 ACACGGGCGTGTC
121261185 ACACGGGCGTGTC
1 ACACGGGCGTGTC
121261198 CCTGCCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:121262868 original size:175 final size:175
Alignment explanation
Indices: 121262577--121262917 Score: 637
Period size: 175 Copynumber: 1.9 Consensus size: 175
121262567 GCGATTGCTG
*
121262577 CTGATCCAATAAATCAGAATCCTGCTCCATGCACTATGTATGATTATGCTAAACCTAATTTAACA
1 CTGATCCAATAAATCAGAATCCTACTCCATGCACTATGTATGATTATGCTAAACCTAATTTAACA
*
121262642 GGGACTAAGTCAAGCATAGTTAGACCTCCTATTGCTGCAAATAATTTTGAACTGAAACCTAACAC
66 GGAACTAAGTCAAGCATAGTTAGACCTCCTATTGCTGCAAATAATTTTGAACTGAAACCTAACAC
121262707 AATTCAAATGATACAACAGTTTGTTCAGTTTGATGGAGCAGGATT
131 AATTCAAATGATACAACAGTTTGTTCAGTTTGATGGAGCAGGATT
121262752 CTGATCCAATAAATCAGAATCCTACTCCATGCACTATGTATGATTATGCTAAACCTAATTTAACA
1 CTGATCCAATAAATCAGAATCCTACTCCATGCACTATGTATGATTATGCTAAACCTAATTTAACA
* * *
121262817 GGAACTGAGTCAAGTATAGTTAGACCTGCTATTGCTGCAAATAATTTTGAACTGAAACCTAACAC
66 GGAACTAAGTCAAGCATAGTTAGACCTCCTATTGCTGCAAATAATTTTGAACTGAAACCTAACAC
121262882 AATTCAAATGATACAACAGTTTGTTCAGTTTGATGG
131 AATTCAAATGATACAACAGTTTGTTCAGTTTGATGG
121262918 TTTGCAGGAC
Statistics
Matches: 161, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
175 161 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (175 bp):
CTGATCCAATAAATCAGAATCCTACTCCATGCACTATGTATGATTATGCTAAACCTAATTTAACA
GGAACTAAGTCAAGCATAGTTAGACCTCCTATTGCTGCAAATAATTTTGAACTGAAACCTAACAC
AATTCAAATGATACAACAGTTTGTTCAGTTTGATGGAGCAGGATT
Found at i:121272208 original size:32 final size:32
Alignment explanation
Indices: 121272167--121272227 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
121272157 CTCCCAATAT
121272167 ACCTATATAGAACGTTTGGAGTGAGCAAGGAA
1 ACCTATATAGAACGTTTGGAGTGAGCAAGGAA
121272199 ACCTATATAGAACGTTTGGAGTGAGCAAG
1 ACCTATATAGAACGTTTGGAGTGAGCAAG
121272228 AAGAGGGGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (32 bp):
ACCTATATAGAACGTTTGGAGTGAGCAAGGAA
Found at i:121275086 original size:2 final size:2
Alignment explanation
Indices: 121275079--121275106 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
121275069 GGCCTTGTTG
121275079 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121275107 GCGATACTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121276657 original size:31 final size:31
Alignment explanation
Indices: 121276622--121276685 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
121276612 CTTTTTCATA
*
121276622 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
121276653 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
121276684 TT
1 TT
121276686 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:121276768 original size:42 final size:42
Alignment explanation
Indices: 121276709--121276800 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
121276699 TGGCCCATAG
**
121276709 GCCCATTTCAATATCACAT-ATAATGTCAATGAAAGAATGCAA
1 GCCCATTTCAATATCACATGA-AATACCAATGAAAGAATGCAA
* *
121276751 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAAAGAATGCAA
*
121276793 ACCCATTT
1 GCCCATTT
121276801 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 43 0.98
43 1 0.02
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAAAGAATGCAA
Found at i:121276972 original size:23 final size:23
Alignment explanation
Indices: 121276942--121277108 Score: 253
Period size: 23 Copynumber: 7.1 Consensus size: 23
121276932 CCTTGCCTCT
*
121276942 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
121276965 TTTAATAACTGGGGCGTAAGCCTT
1 TTTAATAACTGGGGCATAAGCC-C
*
121276989 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
121277012 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
121277036 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
121277060 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
121277083 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
121277106 TTT
1 TTT
121277109 TGCACTTCCT
Statistics
Matches: 135, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
23 68 0.50
24 67 0.50
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:121276973 original size:48 final size:47
Alignment explanation
Indices: 121276940--121277108 Score: 268
Period size: 47 Copynumber: 3.6 Consensus size: 47
121276930 GGCCTTGCCT
* *
121276940 CTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
* * *
121276987 TTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCC
*
121277035 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
121277082 C-TTTAATAACTGGGGCATAAGCCCTTT
1 CTTTTAATAACTGGGGCATAAGCCCTTT
121277109 TGCACTTCCT
Statistics
Matches: 113, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
46 25 0.22
47 44 0.39
48 44 0.39
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (47 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:121277001 original size:24 final size:23
Alignment explanation
Indices: 121276940--121277109 Score: 232
Period size: 24 Copynumber: 7.2 Consensus size: 23
121276930 GGCCTTGCCT
*
121276940 CTTTTAATAACTGGGGCAAAAGC
1 CTTTTAATAACTGGGGCATAAGC
* *
121276963 CCTTTAATAACTGGGGCGTAAGC
1 CTTTTAATAACTGGGGCATAAGC
*
121276986 CTTTTTGATAACTGGGGCATAAGCC
1 C-TTTTAATAACTGGGGCATAAG-C
*
121277011 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAG-C
*
121277035 CTTTTGATAACTGGGGCATAAGC
1 CTTTTAATAACTGGGGCATAAGC
*
121277058 CCTTTAATAACTGGGGCATAAGC
1 CTTTTAATAACTGGGGCATAAGC
*
121277081 CCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAG-C
121277105 CTTTT
1 CTTTT
121277110 GCACTTCCTC
Statistics
Matches: 135, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
23 65 0.48
24 68 0.50
25 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (23 bp):
CTTTTAATAACTGGGGCATAAGC
Found at i:121277183 original size:20 final size:20
Alignment explanation
Indices: 121277155--121277225 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
121277145 GCATTTATGA
*
121277155 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
121277175 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
* *
121277195 ACATGTCATGTGCATATCAG
1 ACATATCATGTGCATATCAT
121277215 ACATATCATGT
1 ACATATCATGT
121277226 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:121277290 original size:25 final size:25
Alignment explanation
Indices: 121277262--121277309 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
121277252 ATACATAAAC
* *
121277262 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
121277287 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
121277310 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:121278520 original size:27 final size:27
Alignment explanation
Indices: 121278458--121278522 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
121278448 GGGCATATTC
121278458 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
121278485 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
121278512 GTCTTTTTACC
1 GTCATTTTACC
121278523 TTTTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:121278606 original size:27 final size:27
Alignment explanation
Indices: 121278574--121278791 Score: 184
Period size: 27 Copynumber: 8.0 Consensus size: 27
121278564 TGGTAAATCA
* *
121278574 ACAAACCAAAGGTATTTCAGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
** * **
121278601 GTAAACCAATGGTATTTCTATAATTTTT
1 ACAAACCAAGGGTATTTCGGTAA-TTTT
* * * *
121278629 AGAAAGTCAAGGGTATTTCTGTAACTTT
1 ACAAA-CCAAGGGTATTTCGGTAATTTT
** * * *
121278657 GTAAATCAGGGGTATTTTGGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
*** *
121278684 ACAAATTGAGGGTATTTCGGTAATTTC
1 ACAAACCAAGGGTATTTCGGTAATTTT
*
121278711 ACAAACCAAGGGTATTTTGGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
* * *
121278738 ACAAACTAGGGGTATTTTGGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
**
121278765 ACAAACCAAGGGTATTTTAGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
121278792 GTAAATCGAG
Statistics
Matches: 155, Mismatches: 34, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
27 127 0.82
28 13 0.08
29 15 0.10
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
ACAAACCAAGGGTATTTCGGTAATTTT
Found at i:121278803 original size:27 final size:27
Alignment explanation
Indices: 121278553--121278805 Score: 179
Period size: 27 Copynumber: 9.3 Consensus size: 27
121278543 TTTCATCCTA
* * ** *
121278553 CAAGGGTGTTTTGGTAAATCAACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** ** *
121278580 CAAAGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
121278607 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-T
* **
121278636 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
*
121278663 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * * *
121278690 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
121278717 CAAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
121278743 CTAGGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* **
121278771 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
121278798 CGAGGGTA
1 CAAGGGTA
121278806 AAACAGTAAT
Statistics
Matches: 179, Mismatches: 41, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
26 2 0.01
27 148 0.83
28 14 0.08
29 15 0.08
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:121278813 original size:27 final size:27
Alignment explanation
Indices: 121278783--121279042 Score: 296
Period size: 27 Copynumber: 9.6 Consensus size: 27
121278773 AGGGTATTTT
*
121278783 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
121278810 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
121278837 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
121278864 -GATAATTCTGTAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* *
121278891 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
121278918 -GATAATTATGTAAATC-AGGGGTAAAAC
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
* * * *
121278945 GGTAATTATGTAAATTGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* **
121278972 -GATAATTTTACAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
*
121278999 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
121279026 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
121279043 GGAGTACTTT
Statistics
Matches: 204, Mismatches: 19, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
26 5 0.02
27 195 0.96
28 4 0.02
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:121278815 original size:54 final size:54
Alignment explanation
Indices: 121278666--121278870 Score: 169
Period size: 54 Copynumber: 3.8 Consensus size: 54
121278656 TGTAAATCAG
* * *** *
121278666 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACGGTAATTTTACAAACCAA
* * ****
121278720 GGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTAGTAATTTTACAAATCGA-GGGTAAAACGGTAATTTTACAAACCAA
** * * * *
121278774 GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAA
1 GGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACGGTAATTTTACAAACCAA
**** * * *
121278828 GGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATT
1 GGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACGGTAATT
121278871 CTGTAAATCG
Statistics
Matches: 125, Mismatches: 24, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
53 1 0.01
54 122 0.98
55 2 0.02
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACGGTAATTTTACAAACCAA
Found at i:121279059 original size:81 final size:79
Alignment explanation
Indices: 121278784--121279073 Score: 321
Period size: 81 Copynumber: 3.6 Consensus size: 79
121278774 GGGTATTTTA
* * * *
121278784 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCG-GGGTAAAACGGTAATTCTACAAATCGAGGGTAAAACAGTAATTCTATA
121278849 AATCGAGGGTAAAACG
65 AAT-GAGGGTAAAACG
* ** * * *
121278865 ATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAAC-GATAATTATGT
1 GTAATTCTGTAAATCG-GGGTAAAACGGTAATTCTACAAATCGAGGGTAAAACAG-TAATTCTAT
*
121278929 AAATCAGGGGTAAAACG
64 AAATGA-GGGTAAAACG
* * * *
121278946 GTAATTATGTAAATTGGGGGTAAAACGATAATTTTACAAATCGAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAA-TCGGGGTAAAACGGTAATTCTACAAATCGAGGGTAAAACAGTAATTCTATA
121279011 AACTGAGGGTAAAACG
65 AA-TGAGGGTAAAACG
**** *
121279027 GTAATTCTGTAAATCGGGAGTACTTTGGTAATTTTACAAATCGAGGG
1 GTAATTCTGTAAATCGGG-GTAAAACGGTAATTCTACAAATCGAGGG
121279074 CATTTCAGTA
Statistics
Matches: 176, Mismatches: 27, Indels: 12
0.82 0.13 0.06
Matches are distributed among these distances:
80 6 0.03
81 165 0.94
82 5 0.03
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (79 bp):
GTAATTCTGTAAATCGGGGTAAAACGGTAATTCTACAAATCGAGGGTAAAACAGTAATTCTATAA
ATGAGGGTAAAACG
Found at i:121285489 original size:40 final size:40
Alignment explanation
Indices: 121285440--121285687 Score: 286
Period size: 40 Copynumber: 6.2 Consensus size: 40
121285430 TCTTCGGAAT
* * *
121285440 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
121285479 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
121285519 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
121285559 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
* * *
121285599 TTAGCCCGGGTATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
121285639 TTAGCCCGAATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
121285679 TTAGCCCGG
1 TTAGCCCGG
121285688 GTATCATTCA
Statistics
Matches: 173, Mismatches: 32, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
39 4 0.02
40 167 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:121285567 original size:80 final size:80
Alignment explanation
Indices: 121285431--121285687 Score: 356
Period size: 80 Copynumber: 3.2 Consensus size: 80
121285421 AACCGAGTCT
* * * ** * * **
121285431 CTTCGGAATTTAG-CCGGATATAACCACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAA
* * *
121285494 TAACTTGCACAAATGC
65 TCACTAGCATAAATGC
*
121285510 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
121285575 CACTAGCATAAATGC
66 CACTAGCATAAATGC
* *
121285590 CTTCGGGACTTAGCCCGGGTATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGAATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
121285655 CACTAGCATAAATGC
66 CACTAGCATAAATGC
121285670 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
121285688 GTATCATTCA
Statistics
Matches: 160, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
79 10 0.06
80 148 0.93
81 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
CACTAGCATAAATGC
Found at i:121285688 original size:80 final size:80
Alignment explanation
Indices: 121285467--121285691 Score: 360
Period size: 80 Copynumber: 2.8 Consensus size: 80
121285457 CAAGCACAAT
* * ** * * * * *
121285467 TGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
121285532 AACAACTCGCACGAA
66 AACAACTCGCACGAA
121285547 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
121285612 AACAACTCGCACGAA
66 AACAACTCGCACGAA
*
121285627 TGCCTTCGGGTCTTAGCCCGAATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
121285692 CATTCAAATG
Statistics
Matches: 135, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 135 1.00
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
AACAACTCGCACGAA
Found at i:121294070 original size:31 final size:32
Alignment explanation
Indices: 121294034--121294096 Score: 94
Period size: 31 Copynumber: 2.0 Consensus size: 32
121294024 TTGAATTAAT
*
121294034 TTTGACTC-TCAATCTTTTA-AAAATAGTCAAA
1 TTTGAC-CATCAATCTTTTAGAAAAGAGTCAAA
121294065 TTTGACCATCAATCTTTTAGAAAAGAGTCAAA
1 TTTGACCATCAATCTTTTAGAAAAGAGTCAAA
121294097 ATAATATTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 1 0.03
31 17 0.59
32 11 0.38
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.35
Consensus pattern (32 bp):
TTTGACCATCAATCTTTTAGAAAAGAGTCAAA
Found at i:121296918 original size:273 final size:276
Alignment explanation
Indices: 121296393--121296920 Score: 695
Period size: 273 Copynumber: 1.9 Consensus size: 276
121296383 ATGCAGAGTG
* * * * *
121296393 TTGCTGTTGATGGCTCTTCTGGGGTATCTATGGCTGGTTCGGGTGGCTCAAATGGAGTGGTGACT
1 TTGCTGCTGATGGCCCTTCTAGGGTATCTATGGCTGGTTCGGGTGGCTCAAATGAAATGGTGACT
* ** *
121296458 GGAGAGGCATTCTCATGACAGGGTTCAATCTCCCACTCCAACCACCATTTTCATTTGAAGCACCA
66 GGAGAGGCATTCTCATGACAGGGTTCAATCTCCCACTCCAACAACCATCGTCATTTGAACCACCA
* * * * * * *
121296523 CAACCATAGGGTTGAATCTTTCACTCCAGGTTCTAGAATAGGTAGAAATTTGTGAAATGCATATT
131 CAACCACAGGGTTCAATCTTCCACTCAAGGTACTAGAACAGGTAGAAACTTGTGAAATGCATATT
* *
121296588 GCCAGAAGCATATTCATGATCCACAGCATGAGTCAGCTCCATCAATTAGACCAGTTGCAGGAATG
196 GCCAGAAGCATATTCACGATCCACAGCATGAGTCAGCTCCATCAATCAGACCAGTTGCAGGAATG
121296653 GTACTAATGAGGAGCC
261 GTACTAATGAGGAGCC
* * * **
121296669 TTGCTGCTGGTGGCCCTTCTAGGG-ATCTATGGGTGGTTCGGGTGGTTCAAATGAAATGGTGGTT
1 TTGCTGCTGATGGCCCTTCTAGGGTATCTATGGCTGGTTCGGGTGGCTCAAATGAAATGGTGACT
* * * *
121296733 GGAGAGGGCATTCTCGTGAC-GGG-TCATTCTTCCACTCTAACAACCATCGTCATTTGAACCACC
66 GGAGA-GGCATTCTCATGACAGGGTTCAATCTCCCACTCCAACAACCATCGTCATTTGAACCACC
* ** *
121296796 TCAACCACA-GGTTCAATCTTCCACTCAAGGTACTAGAACAGGTAGTGACTTGTGAAATGCTTAT
130 ACAACCACAGGGTTCAATCTTCCACTCAAGGTACTAGAACAGGTAGAAACTTGTGAAATGCATAT
* * * * *
121296860 TTCGAGAAGCATATTGACGATCCACAGCATGAGTTAGCTCCATCAATCAGATCAGTTGCAG
195 TGCCAGAAGCATATTCACGATCCACAGCATGAGTCAGCTCCATCAATCAGACCAGTTGCAG
121296921 CAGTGGTAAC
Statistics
Matches: 215, Mismatches: 36, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
273 100 0.47
274 40 0.19
275 42 0.20
276 33 0.15
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (276 bp):
TTGCTGCTGATGGCCCTTCTAGGGTATCTATGGCTGGTTCGGGTGGCTCAAATGAAATGGTGACT
GGAGAGGCATTCTCATGACAGGGTTCAATCTCCCACTCCAACAACCATCGTCATTTGAACCACCA
CAACCACAGGGTTCAATCTTCCACTCAAGGTACTAGAACAGGTAGAAACTTGTGAAATGCATATT
GCCAGAAGCATATTCACGATCCACAGCATGAGTCAGCTCCATCAATCAGACCAGTTGCAGGAATG
GTACTAATGAGGAGCC
Found at i:121297347 original size:29 final size:30
Alignment explanation
Indices: 121297305--121297361 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
121297295 ATTTTATTGT
*
121297305 TAATTTTTTTATTATTTTA-AAGCATTTGC
1 TAATTTTGTTATTATTTTAGAAGCATTTGC
*
121297334 TAATTTTGTTATTATTTTAGAGGCATTT
1 TAATTTTGTTATTATTTTAGAAGCATTT
121297362 ACTTGTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.26, C:0.05, G:0.11, T:0.58
Consensus pattern (30 bp):
TAATTTTGTTATTATTTTAGAAGCATTTGC
Found at i:121297485 original size:19 final size:19
Alignment explanation
Indices: 121297443--121297485 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
121297433 AAGAAATTTT
*
121297443 TATTTTGATGTTTTTAGTA
1 TATTTTGATGTTTATAGTA
121297462 T-TTTTGATTGTTTATA-TA
1 TATTTTGA-TGTTTATAGTA
121297480 TATTTT
1 TATTTT
121297486 AAAATTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.21, C:0.00, G:0.12, T:0.67
Consensus pattern (19 bp):
TATTTTGATGTTTATAGTA
Found at i:121301826 original size:21 final size:22
Alignment explanation
Indices: 121301741--121301828 Score: 58
Period size: 21 Copynumber: 3.9 Consensus size: 22
121301731 ATTTTAATTT
*
121301741 TATTTT-AATAATAAA-AATAA
1 TATTTTAAATAATAAATATTAA
*
121301761 TAATTTTAAATAAT-ATTATTCACA
1 T-ATTTTAAATAATAAATATT-A-A
* *
121301785 TATTATTGAAAATATTCAATATTAA
1 TATT-TT--AAATAATAAATATTAA
121301810 TATTTT-AATAATAAATATT
1 TATTTTAAATAATAAATATT
121301829 TATCACAATT
Statistics
Matches: 53, Mismatches: 6, Indels: 17
0.70 0.08 0.22
Matches are distributed among these distances:
20 1 0.02
21 17 0.32
22 8 0.15
23 4 0.08
24 6 0.11
25 5 0.09
26 7 0.13
27 5 0.09
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.45
Consensus pattern (22 bp):
TATTTTAAATAATAAATATTAA
Found at i:121303927 original size:14 final size:14
Alignment explanation
Indices: 121303908--121303944 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
121303898 GGAAAAATAG
121303908 ATCATTTTCCAGAA
1 ATCATTTTCCAGAA
*
121303922 ATCATTTTCCGGAA
1 ATCATTTTCCAGAA
*
121303936 GTCATTTTC
1 ATCATTTTC
121303945 AGTGAAACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.41
Consensus pattern (14 bp):
ATCATTTTCCAGAA
Found at i:121307377 original size:20 final size:21
Alignment explanation
Indices: 121307343--121307383 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
121307333 AAGTTGTTTA
121307343 ACTCACAACAAAGATTCATTT
1 ACTCACAACAAAGATTCATTT
121307364 ACTCACAA-AAAGATTCATTT
1 ACTCACAACAAAGATTCATTT
121307384 TCTTCCGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.44, C:0.22, G:0.05, T:0.29
Consensus pattern (21 bp):
ACTCACAACAAAGATTCATTT
Found at i:121318310 original size:21 final size:20
Alignment explanation
Indices: 121318286--121318325 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
121318276 ACTTGTTTAA
121318286 CTATCAACAACCATTCAAAAT
1 CTATCAACAACCA-TCAAAAT
* *
121318307 CTATCATCAATCATCAAAA
1 CTATCAACAACCATCAAAA
121318326 CTCATACATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (20 bp):
CTATCAACAACCATCAAAAT
Found at i:121321881 original size:47 final size:46
Alignment explanation
Indices: 121321809--121322163 Score: 229
Period size: 47 Copynumber: 7.6 Consensus size: 46
121321799 TGATTTGTGT
*
121321809 GCCAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGG
* * *
121321855 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGG-CATC-TAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CAT-TATGAGG
* * * * **
121321903 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGG
* * * ** *
121321949 GCTAGTGTAAGACCATGTCTGGGACATGGCATCTG-TACAGCGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACA-TTATGAGG
* * * **
121321997 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AT-TATGAGG
* * * * * * *
121322044 GCCAGTGTAAGACGTGTCTGGGATACGCATCGGCTA-A-GA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATG-AGG
* * * * * *
121322088 GCTAGTATAAGACATGTCTGGGACATGCATCAGCACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CACAT-TATGAGG
*
121322136 GCCAGTGTAAGACCATGTTTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
121322164 GCATTGGCAA
Statistics
Matches: 241, Mismatches: 49, Indels: 35
0.74 0.15 0.11
Matches are distributed among these distances:
43 3 0.01
44 28 0.12
45 1 0.00
46 39 0.16
47 94 0.39
48 61 0.25
49 15 0.06
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGG
Found at i:121321973 original size:94 final size:93
Alignment explanation
Indices: 121321812--121322172 Score: 362
Period size: 94 Copynumber: 3.9 Consensus size: 93
121321802 TTTGTGTGCC
* * * * * *
121321812 AGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGGGCCAGTGTAAGACCATGTTTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
121321877 GACATGGCATCGGCATCTAGACGAGGGCT
66 GACATGGCATCGGCATC-AGACGAGGGCT
* *
121321906 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCTAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
* *
121321971 GACATGGCATCTGTA-CAG-CGATGAGTGCT
66 GACATGGCATCGGCATCAGACGA-G-G-GCT
* * *
121322000 AGTGTAAGACATGTCTGGGACATGCATCGGCC-T-CGATGGAGATAGCCAGTGTAAGA-CGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTAT-GAG--AGCCAGTGTAAGACCATGTC
* * * * *
121322062 TGGGATA-CGCATCGGC-TAAGA-GTTGTGCT
63 TGGGACATGGCATCGGCATCAGACG-AGGGCT
* * *
121322091 AGTATAAGACATGTCTGGGACATGCATCAGCACGCGTA-TATGAGAGCCAGTGTAAGACCATGTT
1 AGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACCATGTC
*
121322155 TGGGACATGGCATTGGCA
63 TGGGACATGGCATCGGCA
121322173 ATATATCCCA
Statistics
Matches: 220, Mismatches: 30, Indels: 33
0.78 0.11 0.12
Matches are distributed among these distances:
91 34 0.15
92 19 0.09
93 26 0.12
94 126 0.57
95 15 0.07
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATCAGACGAGGGCT
Found at i:121323685 original size:40 final size:39
Alignment explanation
Indices: 121323626--121323809 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 39
121323616 CCGCACCAAG
* * * *
121323626 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATAT-ACGACTTGCACAAAT
* * * *
121323666 GCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATA-TACGACTTGCACAAAT
* * *
121323706 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATA-CGACTTGCACAAAT
* * * *
121323746 GCCTTCGGGTCTTAACCCGGTTATA--ATTTCCAGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATACGACTTGCA-CA-AA-T
* *
121323786 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
121323810 CATTCAATTT
Statistics
Matches: 115, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
37 4 0.03
38 2 0.02
39 2 0.02
40 107 0.93
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGTCTTAGCCCGGATATACGACTTGCACAAAT
Found at i:121323701 original size:80 final size:80
Alignment explanation
Indices: 121323557--121323765 Score: 199
Period size: 80 Copynumber: 2.6 Consensus size: 80
121323547 ACCTTCGGAG
* * ** * * * *
121323557 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
121323621 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * * *
121323636 CTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
121323699 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * *
121323716 CTTAGCCCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
121323766 TTATAATTTC
Statistics
Matches: 105, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
79 7 0.07
80 97 0.92
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:121328569 original size:13 final size:13
Alignment explanation
Indices: 121328551--121328578 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
121328541 TTTACGACCG
121328551 CATCGTGCATGGT
1 CATCGTGCATGGT
121328564 CATCGTGCATGGT
1 CATCGTGCATGGT
121328577 CA
1 CA
121328579 ACCAATCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.25, G:0.29, T:0.29
Consensus pattern (13 bp):
CATCGTGCATGGT
Found at i:121330739 original size:40 final size:40
Alignment explanation
Indices: 121330694--121330861 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
121330684 TCGGATACAA
121330694 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
121330734 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
121330774 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
121330814 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
121330854 CCGGATAT
1 CCGGATAT
121330862 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:121330834 original size:80 final size:80
Alignment explanation
Indices: 121330694--121330861 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
121330684 TCGGATACAA
* *
121330694 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
121330759 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
121330774 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
121330837 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
121330854 CCGGATAT
1 CCGGATAT
121330862 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:121337990 original size:40 final size:40
Alignment explanation
Indices: 121337945--121338112 Score: 180
Period size: 40 Copynumber: 4.2 Consensus size: 40
121337935 TCGGATACAA
*
121337945 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAAC
* * * *
121337985 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAAC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAAC
** ** *
121338025 CCGGATATAATAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAAC
* *
121338065 CCGGATA-AAGTCACTA-GCAC-AATTACCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAAC
121338105 CCGGATAT
1 CCGGATAT
121338113 CATTCAATTG
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
39 4 0.04
40 105 0.96
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAAC
Found at i:121338085 original size:80 final size:80
Alignment explanation
Indices: 121337961--121338112 Score: 236
Period size: 80 Copynumber: 1.9 Consensus size: 80
121337951 ATAACCACAC
* *
121337961 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAACC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATACCTTCGGGTATTAACC
121338026 CGGATATAATAACTT
66 CGGATATAATAACTT
* *
121338041 GCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAATTACCTTCGGGTCTTAA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAATACCTTCGGGTATTAA
121338104 CCCGGATAT
64 CCCGGATAT
121338113 CATTCAATTG
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
78 1 0.02
79 2 0.03
80 63 0.95
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATACCTTCGGGTATTAACC
CGGATATAATAACTT
Found at i:121344836 original size:46 final size:45
Alignment explanation
Indices: 121344769--121344938 Score: 196
Period size: 46 Copynumber: 3.7 Consensus size: 45
121344759 TGTAACCCGC
* *
121344769 CCATAAGTGAACTCGGACTCAACTTAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCG-AT
* * *
121344815 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGAT
* *** * **
121344861 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGTAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCG-AT
121344908 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
121344939 TTTGATGCTC
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 67 0.66
47 35 0.34
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGAT
Found at i:121350430 original size:46 final size:44
Alignment explanation
Indices: 121350283--121350455 Score: 217
Period size: 46 Copynumber: 3.9 Consensus size: 44
121350273 TGTAACCCGC
*
121350283 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-TTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATTCGCAT
*
121350326 CCATAAGTGAACTCGGACTCAACTCAACGA-TTCGGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATTCGC-A--T
* ***
121350371 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGG--ATTCGCAT
121350418 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
121350456 GCTCAACCAT
Statistics
Matches: 110, Mismatches: 11, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
42 5 0.05
43 33 0.30
44 2 0.02
45 5 0.05
46 50 0.45
47 10 0.09
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATTCGCAT
Found at i:121350445 original size:92 final size:90
Alignment explanation
Indices: 121350291--121350457 Score: 291
Period size: 92 Copynumber: 1.8 Consensus size: 90
121350281 GCCCATAAGT
121350291 GAACTCGGACTCAACTCAACGAGCTCGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
1 GAACTCGGACTCAACTCAACGAGCTCGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
121350356 -TTCGGATGCCTAGTTACATCTCTC
66 GTTCGGATGCCTAGTTACATCTCTC
*
121350380 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG---TTCGCATCCATAAGTGAACTCGGACTCAACTCAA
121350445 CGAGTTCGGATGC
63 CGAGTTCGGATGC
121350458 TCAACCATCC
Statistics
Matches: 73, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
89 27 0.37
92 37 0.51
93 9 0.12
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (90 bp):
GAACTCGGACTCAACTCAACGAGCTCGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
GTTCGGATGCCTAGTTACATCTCTC
Found at i:121352850 original size:55 final size:55
Alignment explanation
Indices: 121352761--121352877 Score: 155
Period size: 55 Copynumber: 2.1 Consensus size: 55
121352751 AGTGGTCGAG
* * *
121352761 CCTGTCAAAACAACACGGGAGTGAGACACACCCGTGT-TGAAGAATTGTGGGTGAA
1 CCTGTTAAAACAACACGGGAGTAAGACACACCCGTGTCT-AACAATTGTGGGTGAA
* * * *
121352816 CCTGTTAAAACAGCACGGGAGTAAGACACGCCCGTGTCTAACACTTGTGGTTGAA
1 CCTGTTAAAACAACACGGGAGTAAGACACACCCGTGTCTAACAATTGTGGGTGAA
121352871 CCTGTTA
1 CCTGTTA
121352878 GATCCACACG
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
55 53 0.98
56 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.21
Consensus pattern (55 bp):
CCTGTTAAAACAACACGGGAGTAAGACACACCCGTGTCTAACAATTGTGGGTGAA
Found at i:121353812 original size:18 final size:18
Alignment explanation
Indices: 121353789--121353826 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
121353779 AATATATATT
121353789 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
121353807 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
121353825 AA
1 AA
121353827 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:121353819 original size:13 final size:13
Alignment explanation
Indices: 121353803--121353827 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
121353793 CAAGTACCCA
121353803 ACCCAACCCAATT
1 ACCCAACCCAATT
121353816 ACCCAACCCAAT
1 ACCCAACCCAAT
121353828 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:121353899 original size:7 final size:6
Alignment explanation
Indices: 121353852--121353898 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
121353842 ATAATTTAAT
* *
121353852 AAATAA AAATAA AAATCTAA AACTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAA
121353899 ACATATAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 32 0.86
8 5 0.14
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:121353982 original size:9 final size:9
Alignment explanation
Indices: 121353917--121353984 Score: 91
Period size: 9 Copynumber: 7.6 Consensus size: 9
121353907 TTTATACATA
*
121353917 TAATTCGAT
1 TAATTCGGT
121353926 TAATTCGGT
1 TAATTCGGT
*
121353935 TAATTCGGG
1 TAATTCGGT
121353944 TAATTCGGT
1 TAATTCGGT
*
121353953 TAATTCGAT
1 TAATTCGGT
*
121353962 TAATTCGAT
1 TAATTCGGT
*
121353971 TAATTAGGT
1 TAATTCGGT
121353980 TAATT
1 TAATT
121353985 TTATGCTTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 53 1.00
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:121366042 original size:86 final size:87
Alignment explanation
Indices: 121365952--121366150 Score: 265
Period size: 86 Copynumber: 2.3 Consensus size: 87
121365942 CAAAACGAGT
* * ** * *
121365952 AATAAAATCTATTTCGCGATTTATTCCCGCAGTTCAACAGATTTTATTCCATTTTTTATTTTTTT
1 AATAAAATCTATTTCGGGATTTATTCCCGCAGTTCAACAGATTTTATTCCATTCTCGAATTTGTT
*
121366017 CCCAAATGAG-TATTAAAATTA
66 CCCAAATGAGAAATTAAAATTA
* * * * *
121366038 AATAAAATCTGTTTAGGGATTTATTTCCGCTGTTGAACAGATTTTATTCCATTCTCGAATTTGTT
1 AATAAAATCTATTTCGGGATTTATTCCCGCAGTTCAACAGATTTTATTCCATTCTCGAATTTGTT
*
121366103 GCCAAATGAGAAATTAAAATTA
66 CCCAAATGAGAAATTAAAATTA
*
121366125 AATATAATCTATTTCGGGATTTATTC
1 AATAAAATCTATTTCGGGATTTATTC
121366151 TCACTGTTTA
Statistics
Matches: 95, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
86 63 0.66
87 32 0.34
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (87 bp):
AATAAAATCTATTTCGGGATTTATTCCCGCAGTTCAACAGATTTTATTCCATTCTCGAATTTGTT
CCCAAATGAGAAATTAAAATTA
Found at i:121366681 original size:39 final size:40
Alignment explanation
Indices: 121366636--121366751 Score: 126
Period size: 39 Copynumber: 2.9 Consensus size: 40
121366626 GCGCTAGCGG
* * *
121366636 CGTTTTTGCATAAATGCCGCAAAAGGTAAAGCAATAATGA
1 CGTTTTTTCATAAACGCCGCAAAAGGTAAAGCAATAACGA
* * * * *
121366676 C-TTTTTTCATAAACGTCGCAAAAGGCAAAGTAATAGCGG
1 CGTTTTTTCATAAACGCCGCAAAAGGTAAAGCAATAACGA
* *
121366715 CGTTTTTCTCATAAACACCACAAAAGGTAAAGCAATA
1 CGTTTTT-TCATAAACGCCGCAAAAGGTAAAGCAATA
121366752 GCAATGTTTA
Statistics
Matches: 61, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
39 31 0.51
40 6 0.10
41 24 0.39
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (40 bp):
CGTTTTTTCATAAACGCCGCAAAAGGTAAAGCAATAACGA
Done.