Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 390 of 433
Found at i:121366781 original size:21 final size:21
Alignment explanation
Indices: 121366742--121366783 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
121366732 CCACAAAAGG
* *
121366742 TAAAGCAATAGCAATGTTTAT
1 TAAAGCAAGAGCAACGTTTAT
*
121366763 TAAAGCAAGAGCAGCGTTTAT
1 TAAAGCAAGAGCAACGTTTAT
121366784 AAAAAAATGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (21 bp):
TAAAGCAAGAGCAACGTTTAT
Found at i:121372757 original size:30 final size:30
Alignment explanation
Indices: 121372721--121372780 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
121372711 TTCCCGAGCC
121372721 TAGGGGC-AAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCTAAAA-TGTAATTATGCAAAAGTT
* *
121372751 TAGGGGCTAAAATGTAATTATTCTAAAGTT
1 TAGGGGCTAAAATGTAATTATGCAAAAGTT
121372781 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (30 bp):
TAGGGGCTAAAATGTAATTATGCAAAAGTT
Found at i:121381321 original size:5 final size:5
Alignment explanation
Indices: 121381311--121381383 Score: 60
Period size: 5 Copynumber: 13.8 Consensus size: 5
121381301 TAATCACCCC
*
121381311 ATTTT ATTTT ATTTT A-TTT ATTATT A-TTT ATTAT ATTATTT ATTTTT
1 ATTTT ATTTT ATTTT ATTTT ATT-TT ATTTT ATTTT A-T-TTT A-TTTT
*
121381358 ATTTT ACTACTT ATTTT ATTTT ATTT
1 ATTTT A-T-TTT ATTTT ATTTT ATTT
121381384 ATTATTCTTA
Statistics
Matches: 57, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
4 7 0.12
5 32 0.56
6 10 0.18
7 8 0.14
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.73
Consensus pattern (5 bp):
ATTTT
Found at i:121381349 original size:22 final size:21
Alignment explanation
Indices: 121381311--121381388 Score: 74
Period size: 22 Copynumber: 3.7 Consensus size: 21
121381301 TAATCACCCC
*
121381311 ATTTTA-TT-TTATTTTATTT
1 ATTTTATTTATTATATTATTT
121381330 ATTATTATTTATTATATTATTT
1 ATT-TTATTTATTATATTATTT
121381352 ATTTT-TATT-TTACTACTTATTTT
1 ATTTTAT-TTATTA-TA-TTA-TTT
121381375 ATTTTATTTATTAT
1 ATTTTATTTATTAT
121381389 TCTTATACTT
Statistics
Matches: 49, Mismatches: 1, Indels: 14
0.77 0.02 0.22
Matches are distributed among these distances:
19 3 0.06
20 7 0.14
21 8 0.16
22 16 0.33
23 11 0.22
24 4 0.08
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (21 bp):
ATTTTATTTATTATATTATTT
Found at i:121381358 original size:18 final size:18
Alignment explanation
Indices: 121381313--121381382 Score: 74
Period size: 19 Copynumber: 3.9 Consensus size: 18
121381303 ATCACCCCAT
121381313 TTTA-TTTTATTTTATT-
1 TTTATTTTTATTTTATTA
*
121381329 TATTATTATTTATTATATTA
1 T-TTATT-TTTATTTTATTA
*
121381349 TTTATTTTTATTTTACTA
1 TTTATTTTTATTTTATTA
*
121381367 CTTA-TTTTATTTTATT
1 TTTATTTTTATTTTATT
121381383 TATTATTCTT
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
16 1 0.02
17 14 0.31
18 14 0.31
19 15 0.33
20 1 0.02
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTATTTTTATTTTATTA
Found at i:121381416 original size:54 final size:54
Alignment explanation
Indices: 121381314--121381417 Score: 140
Period size: 54 Copynumber: 1.9 Consensus size: 54
121381304 TCACCCCATT
** *
121381314 TTATTTTATTTTATTTATTATTATTTATTATATTATTTATTTTTATTTTACTAC
1 TTATTTTATTTTATTTATTATTATTTATTATATTATTTAAATTAATTTTACTAC
*
121381368 TTATTTTATTTTATTTATTATTCTTATACTTATA-T-TTTAAATTAATTTTA
1 TTATTTTATTTTATTTATTATTATT-TA-TTATATTATTTAAATTAATTTTA
121381418 ATTTTTTTGC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
54 36 0.82
55 3 0.07
56 5 0.11
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (54 bp):
TTATTTTATTTTATTTATTATTATTTATTATATTATTTAAATTAATTTTACTAC
Found at i:121383457 original size:30 final size:30
Alignment explanation
Indices: 121383350--121383467 Score: 110
Period size: 30 Copynumber: 3.9 Consensus size: 30
121383340 CTGAGCATTT
* *
121383350 CCACACAGGCTGGACACACACCCATGTGAG
1 CCACACAGGCTGGCCACACGCCCATGTGAG
* * * *
121383380 CTACACGGGTTAGCCACACGCCCATGTGAG
1 CCACACAGGCTGGCCACACGCCCATGTGAG
** * * * *
121383410 CCACATGGGTTGACCACACGCCTATGTAAG
1 CCACACAGGCTGGCCACACGCCCATGTGAG
* *
121383440 CCACACAGGCTGGCCACAAGCTCATGTG
1 CCACACAGGCTGGCCACACGCCCATGTG
121383468 CCAGTTCGTG
Statistics
Matches: 68, Mismatches: 20, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
30 68 1.00
ACGTcount: A:0.26, C:0.34, G:0.25, T:0.15
Consensus pattern (30 bp):
CCACACAGGCTGGCCACACGCCCATGTGAG
Found at i:121387919 original size:88 final size:86
Alignment explanation
Indices: 121387818--121388148 Score: 264
Period size: 87 Copynumber: 3.8 Consensus size: 86
121387808 TTTTTTCGAA
* * * * * * *
121387818 ATTAAAAGTAAATAAAGTCCGTTTCGGAATTTATTCCTGCCGTTCAA-TGAATTTTTTTTCATTT
1 ATTAAAA-TAAATAAAATCTGTTTCGGAATTTATTCCTGCAGCTCAACAG-ATTTTATTCCATTT
121387882 TT-TTATTTTATTTCCAAAACGAGT
64 TTATT-TTTT-TTTCCAAAACGAGT
* * *
121387906 ATTAAAATCAAATAAAATCTATTTTGCAATTTATT-CTGCAGCTCAACAGATTTTATTCCATTTT
1 ATTAAAAT-AAATAAAATCTGTTTCGGAATTTATTCCTGCAGCTCAACAGATTTTATTCCATTTT
121387970 TGATTTTTTTTTCCAAAACGAGT
65 T-ATTTTTTTTTCCAAAACGAGT
* * * * *
121387993 ATTAAAATTAAATAAAATTTGTTTCGGGATTTATTCC-ACTGTTCAACAGATTTTATTCCATTCT
1 ATTAAAA-TAAATAAAATCTGTTTCGGAATTTATTCCTGCAGCTCAACAGATTTTATTCCATT-T
** * * *
121388057 CGATTTTGTTGT-C-AAACGAGAA
64 TTATTTTTTTTTCCAAAACGAG-T
* * * * *
121388079 ACTAAAATTAAATAAAATCTGTTTCGGGATTTATT-CT-CACCATTCAACAAATTTTATTCGATT
1 ATTAAAA-TAAATAAAATCTGTTTCGGAATTTATTCCTGCAGC--TCAACAGATTTTATTCCATT
*
121388142 TTAATTT
63 TTTATTT
121388149 GATTTCCAAA
Statistics
Matches: 200, Mismatches: 32, Indels: 24
0.78 0.12 0.09
Matches are distributed among these distances:
85 9 0.05
86 39 0.19
87 114 0.57
88 36 0.18
89 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.43
Consensus pattern (86 bp):
ATTAAAATAAATAAAATCTGTTTCGGAATTTATTCCTGCAGCTCAACAGATTTTATTCCATTTTT
ATTTTTTTTTCCAAAACGAGT
Found at i:121387989 original size:87 final size:86
Alignment explanation
Indices: 121387887--121388143 Score: 286
Period size: 87 Copynumber: 3.0 Consensus size: 86
121387877 CATTTTTTTA
* * * * **
121387887 TTTTATTTCCAAAACGAGTATTAAAATCAAATAAAATCTATTTTGCAATTTATTCTGCAGCTCAA
1 TTTTTTTTCCAAAACGAGTATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCT-CAGCTCAA
*
121387952 CAGATTTTATTCCATTTTTGAT
65 CAGATTTTATTCCATTTTCGAT
* *
121387974 TTTTTTTTCCAAAACGAGTATTAAAATTAAATAAAATTTGTTTCGGGATTTATTC-CACTGTTCA
1 TTTTTTTTCCAAAACGAGTATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCTCA--GCTCA
*
121388038 ACAGATTTTATTCCATTCTCGAT
64 ACAGATTTTATTCCATTTTCGAT
* * * * *
121388061 TTTGTTGT-C-AAACGAGAAACTAAAATTAAATAAAATCTGTTTCGGGATTTATTCTCACCATTC
1 TTTTTTTTCCAAAACGAG-TATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCTCAGC--TC
* *
121388124 AACAAATTTTATTCGATTTT
63 AACAGATTTTATTCCATTTT
121388144 AATTTGATTT
Statistics
Matches: 144, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
85 9 0.06
86 35 0.24
87 100 0.69
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (86 bp):
TTTTTTTTCCAAAACGAGTATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCTCAGCTCAAC
AGATTTTATTCCATTTTCGAT
Found at i:121395957 original size:55 final size:55
Alignment explanation
Indices: 121395837--121396234 Score: 353
Period size: 55 Copynumber: 7.5 Consensus size: 55
121395827 ATAAGGGTAT
** * * * * * *
121395837 CATGTAAGACCATACCAAGGCATGGCATTAAT-AATTTCTATAAGGCAAGGAAAT
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAGGATAC
*
121395891 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC-AAGGATAC
* * * * *
121395946 CATGTAAGACCATGTGAATACATGACATTGGTGAGTT-C-ATAAGACAAGGATAC
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAGGATAC
*** ** *
121395999 CATGTAAGACCATGTTTGGAACATGGCATT--TG-G-TAAGATAA-G---GG-TAT
1 CATGTAAGACCATGTCAAG-ACATGGCATTGATGAGTTACTATAAGGCAAGGATAC
** * * * * * *
121396046 CATGTAAGACCATACCAAGGCATGGCATTAAT-AATTTCTATAAGGCAAGGAAAT
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAGGATAC
*
121396100 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC-AAGGATAC
* * *
121396155 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTT-C-ATAAGGCAAGGATAC
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAGGATAC
*
121396208 CACGTAAGACCATGTCAAGACATGGCA
1 CATGTAAGACCATGTCAAGACATGGCA
121396235 ACGGTAAGTT
Statistics
Matches: 276, Mismatches: 50, Indels: 37
0.76 0.14 0.10
Matches are distributed among these distances:
46 9 0.03
47 16 0.06
48 3 0.01
49 5 0.02
50 2 0.01
51 1 0.00
52 14 0.05
53 58 0.21
54 69 0.25
55 91 0.33
56 8 0.03
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (55 bp):
CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAGGATAC
Found at i:121396004 original size:108 final size:108
Alignment explanation
Indices: 121395837--121396234 Score: 454
Period size: 109 Copynumber: 3.7 Consensus size: 108
121395827 ATAAGGGTAT
* ** * * *
121395837 CATGTAAGACCATACCAAGGCATGGCATTAATAATTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGAAACCATGTAAGACC
121395902 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
65 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
** ** * * *
121395946 CATGTAAGACCATGTGAATACATGACATTGGTGAGTTCATAAGACAAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGAAACCATGTAAGACCA
*** ** **
121396011 TGTTTGGAACATGGCATT--TG-G-TAAGATAA-G----GGTAT
66 TGTCAAG-ACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* ** * * *
121396046 CATGTAAGACCATACCAAGGCATGGCATTAATAATTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGAAACCATGTAAGACC
121396111 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
65 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* *
121396155 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGAAACCATGTAAGACCA
121396220 TGTCAAGACATGGCA
66 TGTCAAGACATGGCA
121396235 ACGGTAAGTT
Statistics
Matches: 230, Mismatches: 48, Indels: 23
0.76 0.16 0.08
Matches are distributed among these distances:
100 41 0.18
101 28 0.12
102 2 0.01
103 1 0.00
104 7 0.03
105 7 0.03
106 1 0.00
107 2 0.01
108 67 0.29
109 74 0.32
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
Found at i:121396136 original size:209 final size:209
Alignment explanation
Indices: 121395776--121396222 Score: 831
Period size: 209 Copynumber: 2.1 Consensus size: 209
121395766 GCATTGGCAC
121395776 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGGTATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGGTATCATG
121395841 TAAGACCATACCAAGGCATGGCATTAATAATTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
66 TAAGACCATACCAAGGCATGGCATTAATAATTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
** *
121395906 CAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGTGAATACATGA
131 CAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGCCAAGACATGA
121395971 CATTGGTGAGTTCA
196 CATTGGTGAGTTCA
121395985 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGGTATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGGTATCATG
121396050 TAAGACCATACCAAGGCATGGCATTAATAATTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
66 TAAGACCATACCAAGGCATGGCATTAATAATTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
* *
121396115 CAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGCCAAGGCATGG
131 CAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGCCAAGACATGA
121396180 CATTGGTGAGTTCA
196 CATTGGTGAGTTCA
* *
121396194 TAAGGCAAGGATACCACGTAAGACCATGT
1 TAAGACAAGGATACCATGTAAGACCATGT
121396223 CAAGACATGG
Statistics
Matches: 231, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
209 231 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.24
Consensus pattern (209 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGGTATCATG
TAAGACCATACCAAGGCATGGCATTAATAATTTCTATAAGGCAAGGAAATCATGTAAGACCATGT
CAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGCCAAGACATGA
CATTGGTGAGTTCA
Found at i:121396186 original size:154 final size:154
Alignment explanation
Indices: 121395889--121396183 Score: 346
Period size: 154 Copynumber: 1.9 Consensus size: 154
121395879 AGGCAAGGAA
** * * **
121395889 ATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAG
1 ATCATGTAAGACCATACCAAGACATGGCATTAATGAATTACTATAAGGCAAAGGAACCATGTAAG
* * * ***
121395954 ACCATGTGAATACATGACATTGGTGAGTTCATAAGACAAGGATACCATGTAAGACCATGTTTGGA
66 ACCATGTCAAGACATGACATTGATGAGTTCATAAGACAAGGATACCATGTAAGACCATGCAAGG-
121396019 ACATGGCATTTGGTAAGATAAGGGT
130 ACATGGCATTTGGTAAGATAAGGGT
* * *
121396044 ATCATGTAAGACCATACCAAGGCATGGCATTAAT-AATTTCTATAAGGC-AAGGAAATCATGTAA
1 ATCATGTAAGACCATACCAAGACATGGCATTAATGAATTACTATAAGGCAAAGG-AACCATGTAA
* * *
121396107 GACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCCCATGTAAGACCATGCC
65 GACCATGTCAAGACATGACATTGATGAGTT-C-ATAAGAC-AAGGATACCATGTAAGACCATG-C
121396171 AAGG-CATGGCATT
126 AAGGACATGGCATT
121396184 GGTGAGTTCA
Statistics
Matches: 117, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
153 4 0.03
154 45 0.38
155 40 0.34
156 22 0.19
157 6 0.05
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (154 bp):
ATCATGTAAGACCATACCAAGACATGGCATTAATGAATTACTATAAGGCAAAGGAACCATGTAAG
ACCATGTCAAGACATGACATTGATGAGTTCATAAGACAAGGATACCATGTAAGACCATGCAAGGA
CATGGCATTTGGTAAGATAAGGGT
Found at i:121401269 original size:82 final size:83
Alignment explanation
Indices: 121401174--121401332 Score: 196
Period size: 83 Copynumber: 1.9 Consensus size: 83
121401164 ATTCTTGCTG
*
121401174 TTTAAAAGATTTTATTCGATTTTAATTTGGT-TT-CCAAATTAGAATTAAATTGTATAATCAGTT
1 TTTAAAAGATTTTATTCGA-TTTAATTTGGTATTCCCAAATTAGAATTAAATTGAATAATCAGTT
*
121401237 TCGGGATATATTCTCGTCA
65 TCAGGATATATTCTCGTCA
* * * ** * **
121401256 TTTAACAGATTTTATTTGATTTAGTTTTTTATTCCCAAATTAGAATTCAATTGAATAATTTGTTT
1 TTTAAAAGATTTTATTCGATTTAATTTGGTATTCCCAAATTAGAATTAAATTGAATAATCAGTTT
*
121401321 CAGGATTTATTC
66 CAGGATATATTC
121401333 CCCCGCTTAA
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
81 8 0.12
82 19 0.30
83 37 0.58
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (83 bp):
TTTAAAAGATTTTATTCGATTTAATTTGGTATTCCCAAATTAGAATTAAATTGAATAATCAGTTT
CAGGATATATTCTCGTCA
Found at i:121401357 original size:83 final size:83
Alignment explanation
Indices: 121401207--121401365 Score: 194
Period size: 83 Copynumber: 1.9 Consensus size: 83
121401197 AATTTGGTTT
* * ** *
121401207 CCAAATTAGAATTAAATTGTATAATCAGTTTCGGGATATATTCTCGTCATTTAACAGATTTTATT
1 CCAAATTAGAATTAAATTGAATAATCAGTTTCAGGATATATTCTCCCCACTTAACAGATTTTATT
121401272 TGATTTAGTTTTTTATTC
66 TGATTTAGTTTTTTATTC
* ** * * *
121401290 CCAAATTAGAATTCAATTGAATAATTTGTTTCAGGATTTATTC-CCCCGCTTAACATATTTTATT
1 CCAAATTAGAATTAAATTGAATAATCAGTTTCAGGATATATTCTCCCCACTTAACAGATTTTA-T
*
121401354 TTGATTTTGTTT
65 TTGATTTAGTTT
121401366 CCAAACATAT
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
82 14 0.22
83 49 0.78
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.47
Consensus pattern (83 bp):
CCAAATTAGAATTAAATTGAATAATCAGTTTCAGGATATATTCTCCCCACTTAACAGATTTTATT
TGATTTAGTTTTTTATTC
Found at i:121404907 original size:34 final size:34
Alignment explanation
Indices: 121404835--121404925 Score: 94
Period size: 34 Copynumber: 2.6 Consensus size: 34
121404825 TTGCATATTG
* *
121404835 TACTGAAATGGGCTAAGGCCCAGCCTACCACTAT
1 TACTGAAATGGGCTAAGGCCCAGACTACCACTAC
* * *
121404869 TACTGAAATGGGCTCAA-GCCCAGACTGCTACTGC
1 TACTGAAATGGGCT-AAGGCCCAGACTACCACTAC
*
121404903 TACTGAAAGAGGGGCTAAGGCCC
1 TACTG-AA-ATGGGCTAAGGCCC
121404926 CTAACTGAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
34 31 0.66
35 6 0.13
36 10 0.21
ACGTcount: A:0.29, C:0.27, G:0.25, T:0.19
Consensus pattern (34 bp):
TACTGAAATGGGCTAAGGCCCAGACTACCACTAC
Found at i:121407043 original size:87 final size:86
Alignment explanation
Indices: 121406856--121407338 Score: 344
Period size: 87 Copynumber: 5.7 Consensus size: 86
121406846 TTTTTTCCAA
* * * ** * * * *
121406856 ATTAAAAGTAAATAAATTGTGTTTCGGGATTTATTCTTGCCGTTCAACGGATTTT-TT-TATTAT
1 ATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCAGTTTAACAGATTTTATTCCATT-T
*
121406919 TTTATTTTATTTCCCTAA-TGAGT
65 TTTATTTT-TTTCCCAAACT-AGT
* ***
121406942 ATTAAAATCAAATAAAATCTGTTTTATGATTTATTCCCGCAGTTTAACAGATTTTATTCCATTTT
1 ATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCAGTTTAACAGATTTTATTCCATTTT
121407007 TTATTTTTTTCCCAAAACTAGT
66 TTATTTTTTTCCC-AAACTAGT
* * * * * * *
121407029 ATTAAAATTAAATAAAATTTATTTCGGGATTTATTCCCCCTGTTCAATAGATTTTATTCCATTCT
1 ATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCAGTTTAACAGATTTTATTCCATTTT
** * * *
121407094 CAATTTTTTTGCCAAACAAGAA
66 TTATTTTTTTCCCAAACTAG-T
* *
121407116 ATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAACAGATTTTATTCGA-TTT
1 ATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCAGTTTAACAGATTTTATTCCATTTT
* * ** *
121407180 TAATTTGCTTT-CCAAAAAAGA
66 TTATTT-TTTTCCCAAACTAGT
* * ** * * * *
121407201 ATT-AAATT--GTATAATCTGTTTCAAGATTTATTCTCGTC-GTTTAATAGATTTGATTCAATTT
1 ATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCG-CAGTTTAACAGATTTTATTCCATTT
* * *
121407262 TGTT-TTTTGTTCCCAAATTAGA
65 T-TTATTTTTTTCCCAAACTAGT
* * * * * * *
121407284 ATT-AAATT-GA-AGAATCTATTTCGGGATTTATCCCCACCGCTTAACAGATTTTATT
1 ATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCAGTTTAACAGATTTTATT
121407339 TTGATTTTGT
Statistics
Matches: 320, Mismatches: 65, Indels: 27
0.78 0.16 0.07
Matches are distributed among these distances:
82 43 0.13
83 56 0.17
84 6 0.02
85 4 0.01
86 70 0.22
87 137 0.43
88 4 0.01
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.44
Consensus pattern (86 bp):
ATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCAGTTTAACAGATTTTATTCCATTTT
TTATTTTTTTCCCAAACTAGT
Found at i:121407312 original size:83 final size:81
Alignment explanation
Indices: 121407114--121407334 Score: 223
Period size: 83 Copynumber: 2.7 Consensus size: 81
121407104 GCCAAACAAG
* * *
121407114 AAATTAAAATTAAA-T-AAAATCTGTTTCGGGATTTATTCCCGCCGTTTAACAGATTTTATTCGA
1 AAATTAGAATTAAATTGAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAACAGATTTGATTCAA
*
121407177 TTTTAATTTGCTTTCC
66 TTTTAATTTGCTTCCC
** * ** * * *
121407193 AAAAAAGAATTAAATTGTATAATCTGTTTCAAGATTTATTCTCGTCGTTTAATAGATTTGATTCA
1 AAATTAGAATTAAATTG-AAAATCTGTTTCGGGATTTATTCCCGCCGTTTAACAGATTTGATTCA
**
121407258 ATTTTGTTTTTTG-TTCCC
65 A-TTT-TAATTTGCTTCCC
* * * *
121407276 AAATTAGAATTAAATTGAAGAATCTATTTCGGGATTTATCCCCACCGCTTAACAGATTT
1 AAATTAGAATTAAATTGAA-AATCTGTTTCGGGATTTATTCCCGCCGTTTAACAGATTT
121407335 TATTTTGATT
Statistics
Matches: 110, Mismatches: 26, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
79 11 0.10
80 1 0.01
82 41 0.37
83 52 0.47
84 5 0.05
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (81 bp):
AAATTAGAATTAAATTGAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAACAGATTTGATTCAA
TTTTAATTTGCTTCCC
Found at i:121407421 original size:6 final size:6
Alignment explanation
Indices: 121407410--121407464 Score: 103
Period size: 6 Copynumber: 9.3 Consensus size: 6
121407400 TTCTACATAA
121407410 TTGATT TTGATT TTGATT TTGATT TTGATT TTGATT TTGATT TTGATT
1 TTGATT TTGATT TTGATT TTGATT TTGATT TTGATT TTGATT TTGATT
121407458 TTG-TT TT
1 TTGATT TT
121407465 AGGATTTTAA
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 4 0.08
6 45 0.92
ACGTcount: A:0.15, C:0.00, G:0.16, T:0.69
Consensus pattern (6 bp):
TTGATT
Found at i:121409779 original size:40 final size:40
Alignment explanation
Indices: 121409724--121409828 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 40
121409714 CGACATATCA
* *
121409724 GCTAAATATGACACTTGGTGTGCGGTTCGACATAGCTTCG
1 GCTAAATATGACACTTAGTGTGCGATTCGACATAGCTTCG
* * * *
121409764 GCTAAATTTGTCACTTAGTGTGCGATTTGAGATAGCTTCG
1 GCTAAATATGACACTTAGTGTGCGATTCGACATAGCTTCG
* ** *
121409804 ACTATGTACGACACTTAGTGTGCGA
1 GCTAAATATGACACTTAGTGTGCGA
121409829 GATATCGAGT
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (40 bp):
GCTAAATATGACACTTAGTGTGCGATTCGACATAGCTTCG
Found at i:121409920 original size:56 final size:56
Alignment explanation
Indices: 121409815--121409953 Score: 161
Period size: 56 Copynumber: 2.5 Consensus size: 56
121409805 CTATGTACGA
121409815 CACTTAGTGTGCGAGATATCGAGTATGACACTTAGTGTAAAAAACATTGAGAATGG
1 CACTTAGTGTGCGAGATATCGAGTATGACACTTAGTGTAAAAAACATTGAGAATGG
* * * *** * * **
121409871 CACTTAGTGTGCGAGATATTGATTATGGCACTTAGTGTGCGAGATATTGATTATGG
1 CACTTAGTGTGCGAGATATCGAGTATGACACTTAGTGTAAAAAACATTGAGAATGG
* * *
121409927 CACTTAGTGTGCAATACATCGAGTATG
1 CACTTAGTGTGCGAGATATCGAGTATG
121409954 CAACGACATT
Statistics
Matches: 68, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (56 bp):
CACTTAGTGTGCGAGATATCGAGTATGACACTTAGTGTAAAAAACATTGAGAATGG
Found at i:121409953 original size:28 final size:28
Alignment explanation
Indices: 121409815--121409938 Score: 158
Period size: 28 Copynumber: 4.4 Consensus size: 28
121409805 CTATGTACGA
* *
121409815 CACTTAGTGTGCGAGATATCGAGTATGA
1 CACTTAGTGTGCGAGATATTGAGTATGG
*** * * *
121409843 CACTTAGTGTAAAAAACATTGAGAATGG
1 CACTTAGTGTGCGAGATATTGAGTATGG
*
121409871 CACTTAGTGTGCGAGATATTGATTATGG
1 CACTTAGTGTGCGAGATATTGAGTATGG
*
121409899 CACTTAGTGTGCGAGATATTGATTATGG
1 CACTTAGTGTGCGAGATATTGAGTATGG
121409927 CACTTAGTGTGC
1 CACTTAGTGTGC
121409939 AATACATCGA
Statistics
Matches: 81, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 81 1.00
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
CACTTAGTGTGCGAGATATTGAGTATGG
Found at i:121417237 original size:6 final size:6
Alignment explanation
Indices: 121417217--121417273 Score: 64
Period size: 6 Copynumber: 9.3 Consensus size: 6
121417207 ACAAGTATTT
*
121417217 AAAATA AACAT- AAAATA AAAATA AAAATA AAGAA-A AAAATA AAAGATAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AA-AATA AAAATA AAA-AT-A
121417266 AAAATA AA
1 AAAATA AA
121417274 TGGACTCAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
5 6 0.14
6 28 0.64
7 6 0.14
8 4 0.09
ACGTcount: A:0.81, C:0.02, G:0.04, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:121417239 original size:17 final size:18
Alignment explanation
Indices: 121417217--121417266 Score: 66
Period size: 17 Copynumber: 2.8 Consensus size: 18
121417207 ACAAGTATTT
* *
121417217 AAAATAAACATAAA-ATA
1 AAAATAAAAATAAAGAAA
121417234 AAAATAAAAATAAAGAAA
1 AAAATAAAAATAAAGAAA
121417252 AAAATAAAAGATAAA
1 AAAATAAAA-ATAAA
121417267 AAATAAATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 13 0.45
18 11 0.38
19 5 0.17
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (18 bp):
AAAATAAAAATAAAGAAA
Found at i:121419871 original size:9 final size:9
Alignment explanation
Indices: 121419859--121419915 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
121419849 TTTGATAAAC
121419859 ATGATATGT
1 ATGATATGT
*
121419868 ATGATATGCAC
1 ATGATATG--T
*
121419879 ATGACATGT
1 ATGATATGT
*
121419888 ATGATATGCAC
1 ATGATATG--T
121419899 ATGATATGT
1 ATGATATGT
121419908 ATGATATG
1 ATGATATG
121419916 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:121419882 original size:20 final size:20
Alignment explanation
Indices: 121419857--121419927 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
121419847 ATTTTGATAA
121419857 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
121419877 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
121419897 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
121419917 ACATGAGATGT
1 ACATGATATGT
121419928 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:121419904 original size:11 final size:11
Alignment explanation
Indices: 121419868--121419922 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
121419858 CATGATATGT
121419868 ATGATATGCAC
1 ATGATATGCAC
* *
121419879 ATGACATG--T
1 ATGATATGCAC
121419888 ATGATATGCAC
1 ATGATATGCAC
*
121419899 ATGATATG--T
1 ATGATATGCAC
121419908 ATGATATGCAC
1 ATGATATGCAC
121419919 ATGA
1 ATGA
121419923 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:121420004 original size:23 final size:23
Alignment explanation
Indices: 121419974--121420163 Score: 272
Period size: 23 Copynumber: 8.1 Consensus size: 23
121419964 AGGAAGTGCA
121419974 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
121419997 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
121420020 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
121420044 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
* *
121420068 AAAGGACTTATGCCCCAATTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
121420091 AAAGGGCTTATGCCCCAGTGATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
* *
121420115 AAAGGGCTTACGCCCCAATTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
121420138 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
121420161 AAA
1 AAA
121420164 AGAGGCAAGA
Statistics
Matches: 150, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
23 87 0.58
24 63 0.42
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.27
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:121420065 original size:47 final size:47
Alignment explanation
Indices: 121419972--121420165 Score: 291
Period size: 47 Copynumber: 4.1 Consensus size: 47
121419962 GGAGGAAGTG
*
121419972 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTAT
* * *
121420019 -TAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAATTAT-TAAAGGGCTTATGCCCCAGTTAT
* *
121420066 CAAAAGGACTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTGAT
1 CAAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTAT
* *
121420113 CAAAAGGGCTTACGCCCCAATTATTAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTAT
*
121420160 TAAAAG
1 CAAAAG
121420166 AGGCAAGACC
Statistics
Matches: 133, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
46 22 0.17
47 91 0.68
48 20 0.15
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:121421322 original size:22 final size:22
Alignment explanation
Indices: 121421287--121421332 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
121421277 AAGAAGAGGT
* *
121421287 GAGGGGGAAGAAGGGAAAGGAA
1 GAGGGGGAAGAAGGAAAAGAAA
121421309 GAGGGGGACA-AAGGAAAAGAAA
1 GAGGGGGA-AGAAGGAAAAGAAA
121421331 GA
1 GA
121421333 AGAAGAGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.50, C:0.02, G:0.48, T:0.00
Consensus pattern (22 bp):
GAGGGGGAAGAAGGAAAAGAAA
Found at i:121426268 original size:15 final size:15
Alignment explanation
Indices: 121426248--121426277 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
121426238 AAATCAAATC
*
121426248 TCAATAAAAAGGGAG
1 TCAATAAAAAAGGAG
121426263 TCAATAAAAAAGGAG
1 TCAATAAAAAAGGAG
121426278 AAATTCTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.23, T:0.13
Consensus pattern (15 bp):
TCAATAAAAAAGGAG
Found at i:121426744 original size:15 final size:16
Alignment explanation
Indices: 121426721--121426761 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
121426711 CCTATGATTT
*
121426721 AATCCAAATCAT-ATC
1 AATCAAAATCATAATC
121426736 AATCAAAATCATAAATC
1 AATCAAAATCAT-AATC
121426753 AATCAAAAT
1 AATCAAAAT
121426762 TCACTCGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 11 0.48
17 12 0.52
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (16 bp):
AATCAAAATCATAATC
Found at i:121435287 original size:40 final size:40
Alignment explanation
Indices: 121435243--121435345 Score: 127
Period size: 40 Copynumber: 2.6 Consensus size: 40
121435233 AAACGTATCA
* * *
121435243 GCTAAATATGGCACTTGGTGTGCAGTTCG-GTATAGGTTCG
1 GCTAAATATGGCACTTAGTGTGCAATTCGAG-ATAGCTTCG
* *
121435283 GCTAAATTTGGCACTTAGTGTGCAATTTGAGATAGCTTCG
1 GCTAAATATGGCACTTAGTGTGCAATTCGAGATAGCTTCG
**
121435323 GCTATGTATGGCACTTAGTGTGC
1 GCTAAATATGGCACTTAGTGTGC
121435346 GAGATCTCGA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
40 53 0.98
41 1 0.02
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (40 bp):
GCTAAATATGGCACTTAGTGTGCAATTCGAGATAGCTTCG
Found at i:121435444 original size:28 final size:28
Alignment explanation
Indices: 121435328--121435444 Score: 128
Period size: 28 Copynumber: 4.2 Consensus size: 28
121435318 CTTCGGCTAT
121435328 GTATGGCACTTAGTGTGCGAGATC-TCGA
1 GTATGGCACTTAGTGTGCGAGA-CATCGA
* * * *
121435356 GTATGGAACTTAGTGTGTGAAACATTGA
1 GTATGGCACTTAGTGTGCGAGACATCGA
* * * *
121435384 GAATGACACTTAGTGTGCGAGATATTGA
1 GTATGGCACTTAGTGTGCGAGACATCGA
* *
121435412 TTATGGCACTTAGTGTGCGAGGCATCGA
1 GTATGGCACTTAGTGTGCGAGACATCGA
121435440 GTATG
1 GTATG
121435445 CAACGACATT
Statistics
Matches: 71, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
27 1 0.01
28 70 0.99
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.30
Consensus pattern (28 bp):
GTATGGCACTTAGTGTGCGAGACATCGA
Found at i:121445224 original size:36 final size:36
Alignment explanation
Indices: 121445178--121445249 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
121445168 AATTTGCACA
*
121445178 TACCAAAACTTACCAAAATTGACCGTTTCATTTGGT
1 TACCAAAACTTACCAAAATTGACCATTTCATTTGGT
121445214 TACCAAAACTTACCAAAATTGACCATTTCATTTGGT
1 TACCAAAACTTACCAAAATTGACCATTTCATTTGGT
121445250 CATTCAAAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33
Consensus pattern (36 bp):
TACCAAAACTTACCAAAATTGACCATTTCATTTGGT
Found at i:121448840 original size:21 final size:21
Alignment explanation
Indices: 121448778--121448841 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
121448768 TGAGTTTTCG
* * *
121448778 TTCAGCCCTTACGAGCTTCTG
1 TTCAGCTCTTATGAGCTTCTA
* * *
121448799 TTCAACTGTTATGAGTTTCTA
1 TTCAGCTCTTATGAGCTTCTA
121448820 TTCAGCTCTTATGAGCTTCTA
1 TTCAGCTCTTATGAGCTTCTA
121448841 T
1 T
121448842 GCAACTTATA
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (21 bp):
TTCAGCTCTTATGAGCTTCTA
Found at i:121448847 original size:42 final size:42
Alignment explanation
Indices: 121448760--121448873 Score: 122
Period size: 42 Copynumber: 2.7 Consensus size: 42
121448750 GCTTTTGTTT
* * * * * *
121448760 AACTTATATGAGTTTTCGTTCAGCCCTTACGAGCTTCTGTTC
1 AACTTATATGAATTTCCATTCAGCTCTTACGAGCTTCTATGC
* * *
121448802 AACTGT-TATGAGTTTCTATTCAGCTCTTATGAGCTTCTATGC
1 AACT-TATATGAATTTCCATTCAGCTCTTACGAGCTTCTATGC
*
121448844 AACTTATATGAATTTCCATTTAGCTCTTAC
1 AACTTATATGAATTTCCATTCAGCTCTTAC
121448874 AATGTAACAC
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
41 1 0.02
42 57 0.97
43 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.14, T:0.42
Consensus pattern (42 bp):
AACTTATATGAATTTCCATTCAGCTCTTACGAGCTTCTATGC
Found at i:121449865 original size:28 final size:27
Alignment explanation
Indices: 121449831--121449912 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
121449821 GTCACTGGAT
121449831 ACAGATATTTTGTGGCAGTGCCACCAGA
1 ACAGATA-TTTGTGGCAGTGCCACCAGA
* ** *
121449859 ATAGATATACGTGGCAGGGCCACCAGA
1 ACAGATATTTGTGGCAGTGCCACCAGA
*
121449886 ACAGATAATTTATGGCA-TAGCCACCAG
1 ACAGAT-ATTTGTGGCAGT-GCCACCAG
121449913 GACGCTTCCT
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
27 22 0.51
28 21 0.49
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
ACAGATATTTGTGGCAGTGCCACCAGA
Found at i:121450065 original size:28 final size:28
Alignment explanation
Indices: 121450018--121450082 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
121450008 AAATTAACCC
*
121450018 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
121450046 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
121450074 TAGGGGTAT
1 TAGGGGTAT
121450083 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:121456303 original size:87 final size:87
Alignment explanation
Indices: 121456183--121456345 Score: 326
Period size: 87 Copynumber: 1.9 Consensus size: 87
121456173 TATTTCAACC
121456183 TATTATATGTATATACTAGCTGATGTTGAAGTATAAATCGACTATTGGAAGAATGGAAATAAATA
1 TATTATATGTATATACTAGCTGATGTTGAAGTATAAATCGACTATTGGAAGAATGGAAATAAATA
121456248 ATAGAGAGAGATAAATAATAAA
66 ATAGAGAGAGATAAATAATAAA
121456270 TATTATATGTATATACTAGCTGATGTTGAAGTATAAATCGACTATTGGAAGAATGGAAATAAATA
1 TATTATATGTATATACTAGCTGATGTTGAAGTATAAATCGACTATTGGAAGAATGGAAATAAATA
121456335 ATAGAGAGAGA
66 ATAGAGAGAGA
121456346 GATCGCGGTT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 76 1.00
ACGTcount: A:0.45, C:0.05, G:0.20, T:0.30
Consensus pattern (87 bp):
TATTATATGTATATACTAGCTGATGTTGAAGTATAAATCGACTATTGGAAGAATGGAAATAAATA
ATAGAGAGAGATAAATAATAAA
Found at i:121456581 original size:71 final size:71
Alignment explanation
Indices: 121456493--121456656 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
121456483 GAGATGTATC
121456493 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
121456558 AGGACA
66 AGGACA
*
121456564 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
121456629 CGGACA
66 AGGACA
121456635 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
121456657 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:121464184 original size:70 final size:71
Alignment explanation
Indices: 121464033--121464195 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
121464023 GAGATGTATC
121464033 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
121464098 AGGACA
66 AGGACA
121464104 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
121464168 CGGACA
66 AGGACA
121464174 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
121464196 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:121479638 original size:99 final size:94
Alignment explanation
Indices: 121479484--121479659 Score: 237
Period size: 99 Copynumber: 1.8 Consensus size: 94
121479474 GGGTTATTGT
* * * *
121479484 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTATGAGATGTGTCAGTGTAAGACTATGTC
1 GAGCTAGTGTAAGACATGCCTAGGACATGCATCAGCTATGAGATGAGTCAGTGTAAGACCATGTC
*
121479549 TGGGATATGGCACTGGCACGGATATGCGA
66 TGGGAGATGGCACTGGCACGGATATGCGA
*
121479578 GAGCTAGTGTAAGACCATGCCTAGGACATGGCGTCAGCCTCGATGATGAT-AGTCAGTGTAAGAC
1 GAGCTAGTGTAAGA-CATGCCTAGGACAT-GCATCAG-CT--ATGA-GATGAGTCAGTGTAAGAC
121479642 CATGTCTGGGAGATGGCA
60 CATGTCTGGGAGATGGCA
121479660 TTGGTATTTT
Statistics
Matches: 70, Mismatches: 6, Indels: 7
0.84 0.07 0.08
Matches are distributed among these distances:
94 14 0.20
95 12 0.17
96 6 0.09
97 2 0.03
99 33 0.47
100 3 0.04
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.24
Consensus pattern (94 bp):
GAGCTAGTGTAAGACATGCCTAGGACATGCATCAGCTATGAGATGAGTCAGTGTAAGACCATGTC
TGGGAGATGGCACTGGCACGGATATGCGA
Found at i:121482071 original size:21 final size:21
Alignment explanation
Indices: 121482047--121482148 Score: 102
Period size: 21 Copynumber: 4.9 Consensus size: 21
121482037 CAGCTTTTTA
121482047 GAGCTTCTGTTCAACTCTTAT
1 GAGCTTCTGTTCAACTCTTAT
*
121482068 GAGCTTCTGTTCAACTCATAT
1 GAGCTTCTGTTCAACTCTTAT
* * *
121482089 GAG-TCTATGTTTAGCTCTTAT
1 GAGCT-TCTGTTCAACTCTTAT
*
121482110 GAGCTTCTGCTCAAC-CTTTAT
1 GAGCTTCTGTTCAACTC-TTAT
*
121482131 -AGGCTTCTGTTTAACTCT
1 GA-GCTTCTGTTCAACTCT
121482149 AATGGGATTT
Statistics
Matches: 65, Mismatches: 11, Indels: 10
0.76 0.13 0.12
Matches are distributed among these distances:
20 3 0.05
21 60 0.92
22 2 0.03
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.42
Consensus pattern (21 bp):
GAGCTTCTGTTCAACTCTTAT
Found at i:121486354 original size:13 final size:13
Alignment explanation
Indices: 121486335--121486365 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
121486325 GGGTTTGTTT
121486335 ACTAAACTAATTA
1 ACTAAACTAATTA
*
121486348 TCTAAACTAATTA
1 ACTAAACTAATTA
121486361 ACTAA
1 ACTAA
121486366 TTTAATCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (13 bp):
ACTAAACTAATTA
Found at i:121489291 original size:6 final size:6
Alignment explanation
Indices: 121489280--121489335 Score: 73
Period size: 6 Copynumber: 9.8 Consensus size: 6
121489270 TAAGAAAATT
* *
121489280 TAAAAA TAAAAA TCAAAA TAAAAA TAAGAA T-AAAA T--AAA TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
121489325 TAAAAA TAAAA
1 TAAAAA TAAAA
121489336 TAGGAGGATT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
4 4 0.09
5 4 0.09
6 36 0.82
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.18
Consensus pattern (6 bp):
TAAAAA
Found at i:121489321 original size:15 final size:16
Alignment explanation
Indices: 121489283--121489334 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
121489273 GAAAATTTAA
*
121489283 AAATAAAAATCAAAATAA
1 AAATAAAAAT-AAAA-AT
*
121489301 AAATAAGAAT-AAAAT
1 AAATAAAAATAAAAAT
121489316 AAATAAAAATAAAAAT
1 AAATAAAAATAAAAAT
121489332 AAA
1 AAA
121489335 ATAGGAGGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 10 0.33
16 11 0.37
18 9 0.30
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (16 bp):
AAATAAAAATAAAAAT
Found at i:121489321 original size:21 final size:21
Alignment explanation
Indices: 121489280--121489337 Score: 80
Period size: 21 Copynumber: 2.6 Consensus size: 21
121489270 TAAGAAAATT
121489280 TAAAAATAAAAATCAAAATAAAAA
1 TAAAAAT-AAAAT--AAATAAAAA
*
121489304 TAAGAATAAAATAAATAAAAA
1 TAAAAATAAAATAAATAAAAA
121489325 TAAAAATAAAATA
1 TAAAAATAAAATA
121489338 GGAGGATTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
21 21 0.66
23 5 0.16
24 6 0.19
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.19
Consensus pattern (21 bp):
TAAAAATAAAATAAATAAAAA
Found at i:121493988 original size:13 final size:13
Alignment explanation
Indices: 121493969--121493999 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
121493959 GGGTTTGTTT
121493969 ACTAAACTAATTA
1 ACTAAACTAATTA
*
121493982 TCTAAACTAATTA
1 ACTAAACTAATTA
121493995 ACTAA
1 ACTAA
121494000 TTTAATCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (13 bp):
ACTAAACTAATTA
Found at i:121510602 original size:27 final size:27
Alignment explanation
Indices: 121510572--121510837 Score: 304
Period size: 27 Copynumber: 9.9 Consensus size: 27
121510562 ATTACCAAAG
* *
121510572 TACCCCCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
121510599 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACTGTTT
* *
121510626 TACCC-CTGATTTATATAATTA-TCGTTT
1 TACCCTC-GATTTACAGAATTACT-GTTT
* *
121510653 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
121510680 TACCCTCGATTTACTGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * * *
121510707 TACCCTTGATTTATAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
121510734 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
121510761 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
121510788 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
121510815 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
121510838 AAAATACCCT
Statistics
Matches: 207, Mismatches: 28, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.00
27 205 0.99
28 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:121510845 original size:27 final size:27
Alignment explanation
Indices: 121510815--121510982 Score: 96
Period size: 27 Copynumber: 6.1 Consensus size: 27
121510805 ATTATTGTTT
121510815 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *** *
121510842 TACCCTTGATTTGTGAAATTACCGAAAA
1 TACCCTCGATTTACAAAATTA-CTAAAA
* *
121510870 -ACCCTCAATTTGA-AAAATTACCAAAA
1 TACCCTCGATTT-ACAAAATTACTAAAA
* *
121510896 TACCC-CTAATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
121510923 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
121510952 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
121510979 TACC
1 TACC
121510983 TTTAGTTTGT
Statistics
Matches: 111, Mismatches: 17, Indels: 26
0.72 0.11 0.17
Matches are distributed among these distances:
26 8 0.07
27 72 0.65
28 12 0.11
29 19 0.17
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:121510847 original size:81 final size:81
Alignment explanation
Indices: 121510572--121510837 Score: 351
Period size: 81 Copynumber: 3.3 Consensus size: 81
121510562 ATTACCAAAG
* * * *
121510572 TACCCCCGATTTACAGAATTACTATTTTACCC-CTAATTTACAT-AATTACCGTTTTACCC-CTG
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTC-GATTTAC-TGAATTACTGTTTTACCCTC-G
* *
121510634 ATTTATATAATTATCGTTT
63 ATTTATAGAATTATTGTTT
* * *
121510653 TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACTGAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACTGAATTACTGTTTTACCCTCGATT
*
121510718 TATAGAATTATTATTT
66 TATAGAATTATTGTTT
* *
121510734 TACCCTTGATTTACAGAATTATTGTTTTACCCTCGATTTA-TAGAATTACTGTTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACT-GAATTACTGTTTTACCCTCGAT
121510798 TTATAGAATTATTGTTT
65 TTATAGAATTATTGTTT
*
121510815 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
121510838 AAAATACCCT
Statistics
Matches: 162, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
80 2 0.01
81 159 0.98
82 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.43
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACTGAATTACTGTTTTACCCTCGATT
TATAGAATTATTGTTT
Found at i:121510874 original size:81 final size:81
Alignment explanation
Indices: 121510629--121510880 Score: 177
Period size: 81 Copynumber: 3.1 Consensus size: 81
121510619 ACCGTTTTAC
* ** * * *****
121510629 CCCT-GATTTATATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTATTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTCGATTTA
* ****
121510693 CT-GAATTACTGTTTTA
66 -TAGAATTACCGAAAAA
* * * * ****
121510709 CCCTTGATTTATAGAATTATTATTTTACCCTTGATTTACAGAATTATTGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTATTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTCGATTTA
* ****
121510774 TAGAATTACTGTTTTA
66 TAGAATTACCGAAAAA
* * *
121510790 CCCTCGATTTATAGAATTATTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTG
1 CCCTCGATTTATAGAATTATTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTCGATTTA
121510855 T-GAAATTACCGAAAAA
66 TAG-AATTACCGAAAAA
*
121510871 CCCTCAATTT
1 CCCTCGATTT
121510881 GAAAAATTAC
Statistics
Matches: 145, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
80 6 0.04
81 139 0.96
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTATTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTCGATTTA
TAGAATTACCGAAAAA
Found at i:121510928 original size:54 final size:54
Alignment explanation
Indices: 121510815--121510928 Score: 124
Period size: 54 Copynumber: 2.1 Consensus size: 54
121510805 ATTATTGTTT
* * * * ** *
121510815 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTGTGAAATTACCGAAA
1 TACCCTCAATTTACAAAATTACCAAAATACCCCTAATTTGACAAATTACAGAAA
*
121510869 AACCCTCAATTTGA-AAAATTACCAAAATACCCCTAATTT-ACAAAGTTACAGAAA
1 TACCCTCAATTT-ACAAAATTACCAAAATACCCCTAATTTGACAAA-TTACAGAAA
121510923 TACCCT
1 TACCCT
121510929 TGACTTTCTA
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
53 3 0.06
54 45 0.92
55 1 0.02
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (54 bp):
TACCCTCAATTTACAAAATTACCAAAATACCCCTAATTTGACAAATTACAGAAA
Found at i:121510990 original size:27 final size:27
Alignment explanation
Indices: 121510939--121510990 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
121510929 TGACTTTCTA
*
121510939 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTAGTTTAC
*
121510966 AAAATTACT-GAAATACCTTTAGTTT
1 AAAATTA-TAGAAATACCATTAGTTT
121510991 GTTGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTAGTTTAC
Found at i:121511108 original size:27 final size:27
Alignment explanation
Indices: 121511044--121511108 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
121511034 ACCCCTAAAA
* *
121511044 GGTAAAAAGACCGTAAAGCCCTTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
121511071 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
121511098 GGTAAAATGAC
1 GGTAAAATGAC
121511109 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:121512314 original size:25 final size:25
Alignment explanation
Indices: 121512268--121512315 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
121512258 TTATAATATG
* * *
121512268 AAAATGACCATTTTGCCTCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
121512293 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
121512316 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:121512459 original size:23 final size:23
Alignment explanation
Indices: 121512429--121512571 Score: 214
Period size: 23 Copynumber: 6.1 Consensus size: 23
121512419 AGGAAGTGCA
121512429 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
121512452 AAAGGGCTTATGCCTCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
121512476 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
121512499 AAAGGGCTTATGCCCCAGTGATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
121512523 AAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
121512546 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
121512569 AAA
1 AAA
121512572 AGAGGTAAGG
Statistics
Matches: 107, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
23 66 0.62
24 41 0.38
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:121512496 original size:47 final size:47
Alignment explanation
Indices: 121512427--121512573 Score: 249
Period size: 47 Copynumber: 3.1 Consensus size: 47
121512417 GGAGGAAGTG
*
121512427 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCTCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
121512474 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTGAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
121512521 CAAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
121512568 TAAAAG
1 CAAAAG
121512574 AGGTAAGGCC
Statistics
Matches: 94, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 94 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:121512776 original size:42 final size:42
Alignment explanation
Indices: 121512713--121512804 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
121512703 TAGTCTCCCC
* **
121512713 AAATGGGTTTGCATACATTCATTGGTATT-TCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTAT-ATGTGATATTG
* *
121512755 AAATGGGCTTGCATTCTTTCATTGACATTATATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTATATGTGATATTG
121512797 AAATGGGC
1 AAATGGGC
121512805 CTATGGGCCA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 43 0.98
43 1 0.02
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.40
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTATATGTGATATTG
Found at i:121512866 original size:31 final size:31
Alignment explanation
Indices: 121512831--121512891 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
121512821 TTACAGTAAA
121512831 GGCTTCGGCCCAGTAATATGAAATATGAAAC
1 GGCTTCGGCCCAGTAATATGAAATATGAAAC
**
121512862 GGCTTCGGCCCAGTGTTATGAAATATGAAA
1 GGCTTCGGCCCAGTAATATGAAATATGAAA
121512892 TATGAAAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25
Consensus pattern (31 bp):
GGCTTCGGCCCAGTAATATGAAATATGAAAC
Found at i:121521221 original size:13 final size:13
Alignment explanation
Indices: 121521203--121521228 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
121521193 GAAGTAATCA
121521203 AACACGGGCGTGT
1 AACACGGGCGTGT
121521216 AACACGGGCGTGT
1 AACACGGGCGTGT
121521229 CCCTGCCGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.38, T:0.15
Consensus pattern (13 bp):
AACACGGGCGTGT
Found at i:121523923 original size:21 final size:20
Alignment explanation
Indices: 121523884--121523923 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
121523874 TATGTATGAG
121523884 TTTTGATGATTGATGATAGA
1 TTTTGATGATTGATGATAGA
* *
121523904 TTTTGAATGGTTGTTGATAG
1 TTTTG-ATGATTGATGATAG
121523924 TTAAACAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (20 bp):
TTTTGATGATTGATGATAGA
Found at i:121524844 original size:28 final size:28
Alignment explanation
Indices: 121524809--121524864 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
121524799 TTATTTATTT
121524809 ATGTTTATGTGATTGCATTAAGTTTATC
1 ATGTTTATGTGATTGCATTAAGTTTATC
*
121524837 ATGTTTATTTGATTGCATTAAGTTTATC
1 ATGTTTATGTGATTGCATTAAGTTTATC
121524865 TCAAACAAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.25, C:0.07, G:0.16, T:0.52
Consensus pattern (28 bp):
ATGTTTATGTGATTGCATTAAGTTTATC
Found at i:121525808 original size:38 final size:38
Alignment explanation
Indices: 121525734--121525810 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
121525724 CGCTAGGGAG
**
121525734 TATGTTTCTATAGAAGAAATTATGTGCAAATGGTTTGT
1 TATGTTTCTATAGAAGAAATTATGTGCAAACAGTTTGT
* *
121525772 TATGTTTCTATCGAAGAAATTATGTGCAAGCAGTTTGT
1 TATGTTTCTATAGAAGAAATTATGTGCAAACAGTTTGT
121525810 T
1 T
121525811 GATGAATTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (38 bp):
TATGTTTCTATAGAAGAAATTATGTGCAAACAGTTTGT
Found at i:121538527 original size:47 final size:44
Alignment explanation
Indices: 121538412--121538535 Score: 124
Period size: 44 Copynumber: 2.8 Consensus size: 44
121538402 TACGCGTGCT
121538412 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCC
** * * * * *
121538456 GATGTGTGTCCCAGACACGGCTTACACTGGC-TATCTCTGTCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-T--A-GCC
* *
121538503 GATGCATGTCCCAAACATGTCTTACAATAGCAC
1 GATGCATGTCCCAGACATGTCTTACACTAGCAC
121538536 TCATCTCTGT
Statistics
Matches: 60, Mismatches: 15, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
43 5 0.08
44 27 0.45
46 1 0.02
47 27 0.45
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCC
Found at i:121538635 original size:84 final size:84
Alignment explanation
Indices: 121538476--121538641 Score: 203
Period size: 84 Copynumber: 2.0 Consensus size: 84
121538466 CCAGACACGG
*
121538476 CTTACACTGGCTATCTCTGTCAAGGCCGATGCATGTCCCAAACATGTCTTACAATAGCACTCATC
1 CTTACACTGGCTATCTCAGTCAAGGCCGATGCATGTCCCAAACATGTCTTACAATAGCACTCATC
* *
121538541 TCTGTGCCGATGCACATGGT
66 TCGGTACCGATGC-CATGGT
* * * * * *
121538561 CTTACACTGGCTATCAT-AGT-ATGGCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGT
1 CTTACACTGGCTATC-TCAGTCAAGGCCGATGCATGTCCCAAACATGTCTTACAATAGCACTCAT
121538624 CT-GGATACCGATGCCATG
65 CTCGG-TACCGATGCCATG
121538642 TCCCAGACAT
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
83 5 0.07
84 47 0.67
85 17 0.24
86 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (84 bp):
CTTACACTGGCTATCTCAGTCAAGGCCGATGCATGTCCCAAACATGTCTTACAATAGCACTCATC
TCGGTACCGATGCCATGGT
Found at i:121538645 original size:47 final size:46
Alignment explanation
Indices: 121538587--121538708 Score: 149
Period size: 47 Copynumber: 2.6 Consensus size: 46
121538577 TAGTATGGCT
* *
121538587 GATGCATGTCCCAGACATGTCTTACACTAGCCCTCGT-CTG-GATACC
1 GATGCATGTCCCAGACATGTCTTACACTAGCCCTCATAATGTG--ACC
* *
121538633 GATGCCATGTCCCAGACATGGTCTTACACTGGCCCTCATAATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTCATAATGTGACC
*
121538681 GAAGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
121538709 GGCGCACAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
46 14 0.21
47 28 0.42
48 22 0.33
49 2 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.25
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCCCTCATAATGTGACC
Found at i:121538668 original size:48 final size:46
Alignment explanation
Indices: 121538554--121538711 Score: 158
Period size: 46 Copynumber: 3.4 Consensus size: 46
121538544 GTGCCGATGC
** * * * *
121538554 ACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCAG
1 ACAT-GTCTTACACTGGCCCTCATAATGTGACCGATGCATGTCCCAG
* * *
121538601 ACATGTCTTACACTAGCCCTCGT-CTG-GATACCGATGCCATGTCCCAG
1 ACATGTCTTACACTGGCCCTCATAATGTG--ACCGATG-CATGTCCCAG
* *
121538648 ACATGGTCTTACACTGGCCCTCATAATGTGGCCGAAGCATGTCCCAG
1 ACAT-GTCTTACACTGGCCCTCATAATGTGACCGATGCATGTCCCAG
121538695 ACATGTCTTACACTGGC
1 ACATGTCTTACACTGGC
121538712 GCACAAATCA
Statistics
Matches: 92, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 33 0.36
47 32 0.35
48 22 0.24
49 2 0.02
50 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.27
Consensus pattern (46 bp):
ACATGTCTTACACTGGCCCTCATAATGTGACCGATGCATGTCCCAG
Found at i:121539091 original size:30 final size:30
Alignment explanation
Indices: 121539050--121539107 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
121539040 AAATATACAT
* *
121539050 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
121539080 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
121539108 TGCCCGGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:121539878 original size:32 final size:32
Alignment explanation
Indices: 121539838--121539898 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
121539828 ATCATACTAT
121539838 AACCTCATAAAAATAATAAAATAATTTTTATA
1 AACCTCATAAAAATAATAAAATAATTTTTATA
121539870 AACCTCATAAAAATAATAAAATAATTTTT
1 AACCTCATAAAAATAATAAAATAATTTTT
121539899 CTAACTTCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (32 bp):
AACCTCATAAAAATAATAAAATAATTTTTATA
Found at i:121547387 original size:124 final size:122
Alignment explanation
Indices: 121547167--121547389 Score: 286
Period size: 124 Copynumber: 1.8 Consensus size: 122
121547157 GAATTATGTG
* * * *
121547167 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATACCCGGGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
* * ** **
121547232 TAAGTCCCGAAGGCGGTTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* * *
121547289 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCG
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATAATACCCG
*
121547353 GGCTAAGCCCCGAAGACAATTATGCTGGAAATTATAA
63 GGCTAAGCCCCGAAGACAATTATGCTAGAAATTATAA
121547390 CCGGGTTAAG
Statistics
Matches: 84, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
122 16 0.19
124 65 0.77
125 3 0.04
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (122 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:121547434 original size:40 final size:39
Alignment explanation
Indices: 121547390--121547528 Score: 152
Period size: 40 Copynumber: 3.5 Consensus size: 39
121547380 GAAATTATAA
* * * *
121547390 CCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGTGATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGC-AGTCGTGATAT
* **
121547430 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGC-AGTCGTGATAT
* *
121547470 CCGGGCTAAGACCCGAAGGCATTTGTGCAATCGTGATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAGTCGTGATAT
* * *
121547509 CCGGGTTAAGTCCCGTAGGC
1 CCGGGCTAAGACCCGAAGGC
121547529 CTTGGTGCGG
Statistics
Matches: 83, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
39 24 0.29
40 59 0.71
ACGTcount: A:0.23, C:0.24, G:0.31, T:0.22
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCAGTCGTGATAT
Found at i:121547550 original size:79 final size:80
Alignment explanation
Indices: 121547390--121547573 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 80
121547380 GAAATTATAA
* * * * *
121547390 CCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGTGATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGTGATATCCGGGCTAAGACCCGAAGGCATTCG
*
121547455 TGCGAGTCATTCTAT
66 TGCGAGTCATCCTAT
* * * * *
121547470 CCGGGCTAAGACCCGAAGGCATTTGTGC-AATCGTGATATCCGGGTTAAGTCCCGTAGGCCTTGG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGTGATATCCGGGCTAAGACCCGAAGGCATTCG
* *
121547534 TGCGGGTTA-CCATAT
66 TGCGAGTCATCC-TAT
* * *
121547549 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGACCCGAAGGCATTTG
121547574 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
78 1 0.01
79 61 0.70
80 25 0.29
ACGTcount: A:0.21, C:0.24, G:0.32, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGTGATATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATCCTAT
Found at i:121555479 original size:40 final size:39
Alignment explanation
Indices: 121555435--121555572 Score: 152
Period size: 39 Copynumber: 3.5 Consensus size: 39
121555425 GAAATTATAA
* * * *
121555435 CCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGTGATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGC-AGTCGTGATAT
* *
121555475 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT-CTAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGC-AGTCGTGATAT
* *
121555514 CCGGGCTAAGACCCGAAGGCATTTGTGCAATCGTGATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAGTCGTGATAT
* * *
121555553 CCGGGTTAAGTCCCGTAGGC
1 CCGGGCTAAGACCCGAAGGC
121555573 CTTGGTGCGG
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
38 4 0.05
39 50 0.60
40 29 0.35
ACGTcount: A:0.23, C:0.24, G:0.31, T:0.22
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCAGTCGTGATAT
Found at i:121555525 original size:39 final size:40
Alignment explanation
Indices: 121555435--121555600 Score: 147
Period size: 39 Copynumber: 4.2 Consensus size: 40
121555425 GAAATTATAA
* * * * **
121555435 CCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGTGATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATGATAT
*
121555475 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT-CTAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATGATAT
* * *
121555514 CCGGGCTAAGACCCGAAGGCATTTGTGC-AATCGTGATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATGATAT
* * * * * * * **
121555553 CCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTACCATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATGATAT
121555593 CCGGGCTA
1 CCGGGCTA
121555601 TGTCCGAAGG
Statistics
Matches: 101, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
38 4 0.04
39 56 0.55
40 41 0.41
ACGTcount: A:0.22, C:0.24, G:0.31, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATGATAT
Found at i:121560993 original size:71 final size:72
Alignment explanation
Indices: 121560869--121561008 Score: 194
Period size: 71 Copynumber: 2.0 Consensus size: 72
121560859 AGTCCGAGCG
* * *
121560869 ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGTAATGACTATTTC-CTG
1 ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGACAGGCAATGACAATTTCTC-G
121560933 GGCTCGTC
65 GGCTCGTC
* * * *
121560941 ATCGCATTCACTTTCGGCTGATAC-TCTTATCATCCGGATTTTACGGGCAATGACAATTTCTCGG
1 ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGACAGGCAATGACAATTTCTCGG
121561005 GCTC
66 GCTC
121561009 ATCGGGGGGC
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
71 37 0.62
72 23 0.38
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (72 bp):
ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGACAGGCAATGACAATTTCTCGG
GCTCGTC
Found at i:121565170 original size:15 final size:16
Alignment explanation
Indices: 121565151--121565212 Score: 56
Period size: 15 Copynumber: 3.8 Consensus size: 16
121565141 TACCTTCTTT
121565151 TTTTCTTCTCCTTCT-
1 TTTTCTTCTCCTTCTA
*
121565166 TTTTCTTCCTTCTCTTCTC
1 TTTTCTT-C-TC-CTTCTA
* *
121565185 CTTTCTT-TCCTTTTA
1 TTTTCTTCTCCTTCTA
121565200 TTTTCTTCTCCTT
1 TTTTCTTCTCCTT
121565213 GCTGCTGAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
15 17 0.45
16 8 0.21
17 2 0.05
18 5 0.13
19 6 0.16
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTTCTTCTCCTTCTA
Found at i:121567911 original size:21 final size:21
Alignment explanation
Indices: 121567878--121567974 Score: 90
Period size: 21 Copynumber: 4.6 Consensus size: 21
121567868 AAACTCGTAT
* *
121567878 GAGTTTCAATTTAACCTTATT
1 GAGTTTCAGTTTAACCTTATC
* *
121567899 GGGTTTCCGTTTAACTCTT-TC
1 GAGTTTCAGTTTAAC-CTTATC
* *
121567920 GAGTTTCAGTTTAACTTTTTC
1 GAGTTTCAGTTTAACCTTATC
121567941 GAGTTTCAGTTTAACCCTTA-C
1 GAGTTTCAGTTTAA-CCTTATC
* *
121567962 GGGTTTCCGTTTA
1 GAGTTTCAGTTTA
121567975 GCACTTATGT
Statistics
Matches: 62, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
20 2 0.03
21 54 0.87
22 6 0.10
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.46
Consensus pattern (21 bp):
GAGTTTCAGTTTAACCTTATC
Found at i:121567933 original size:42 final size:42
Alignment explanation
Indices: 121567878--121567974 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
121567868 AAACTCGTAT
* * * * *
121567878 GAGTTTCAATTTAACCTTATT-GGGTTTCCGTTTAACTCTTTC
1 GAGTTTCAGTTTAA-CTTATTCGAGTTTCAGTTTAACCCTTAC
*
121567920 GAGTTTCAGTTTAACTTTTTCGAGTTTCAGTTTAACCCTTAC
1 GAGTTTCAGTTTAACTTATTCGAGTTTCAGTTTAACCCTTAC
* *
121567962 GGGTTTCCGTTTA
1 GAGTTTCAGTTTA
121567975 GCACTTATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
41 5 0.11
42 41 0.89
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.46
Consensus pattern (42 bp):
GAGTTTCAGTTTAACTTATTCGAGTTTCAGTTTAACCCTTAC
Found at i:121573830 original size:96 final size:94
Alignment explanation
Indices: 121573714--121573898 Score: 318
Period size: 96 Copynumber: 1.9 Consensus size: 94
121573704 GCAAACAAGC
*
121573714 AGAATTTGATTATTTTTTGTTTTGTATTATGTAGTAATTCTTTTTTATTAAAAAATAAATTACTT
1 AGAATTTGATTATTTTTTGTTTTGTATTATGTAGTAATTATTTTTTATT-AAAAA-AAATTACTT
*
121573779 TGATAAAATTTCACCTTATATATATTATAAT
64 TGATAAAATATCACCTTATATATATTATAAT
121573810 AGAATTTGATTGA-TTTTTGTTTTGTATTATGTAGTAATTATTTTTTATTAAAAAAAATTACTTT
1 AGAATTTGATT-ATTTTTTGTTTTGTATTATGTAGTAATTATTTTTTATTAAAAAAAATTACTTT
121573874 GATAAAATATCACCTTATATATATT
65 GATAAAATATCACCTTATATATATT
121573899 CTTATTATAA
Statistics
Matches: 86, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
94 34 0.40
95 5 0.06
96 46 0.53
97 1 0.01
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (94 bp):
AGAATTTGATTATTTTTTGTTTTGTATTATGTAGTAATTATTTTTTATTAAAAAAAATTACTTTG
ATAAAATATCACCTTATATATATTATAAT
Found at i:121577288 original size:33 final size:33
Alignment explanation
Indices: 121577231--121577295 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
121577221 CGCCGCAAAA
* *
121577231 ATTGTAAAACACATAGCAATAGCGGCGTTTTTT
1 ATTGTAAAACACAGAGCAATAGCGGCGCTTTTT
*
121577264 ATTGCTAAAA-ACAGAGCATTAGCGGCGCTTTT
1 ATTG-TAAAACACAGAGCAATAGCGGCGCTTTT
121577296 GGCAAAACGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 23 0.82
34 5 0.18
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (33 bp):
ATTGTAAAACACAGAGCAATAGCGGCGCTTTTT
Found at i:121577324 original size:41 final size:40
Alignment explanation
Indices: 121577267--121577395 Score: 204
Period size: 41 Copynumber: 3.2 Consensus size: 40
121577257 GTTTTTTATT
*
121577267 GCTAAAAACAGAGCATTAGCGGCGCTTTTGGCAAAACGCC
1 GCTAAAAACAGAGCATTAGCGGCGCTTTTGGAAAAACGCC
* *
121577307 ACTAAAAACTAGAGCATTAGCGGCGCTTTTGGAAAAATGCC
1 GCTAAAAAC-AGAGCATTAGCGGCGCTTTTGGAAAAACGCC
*
121577348 GCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCC
1 GCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGAAAAACGCC
121577389 GCTAAAA
1 GCTAAAA
121577396 GTTATATAAC
Statistics
Matches: 81, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
40 8 0.10
41 72 0.89
42 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.19
Consensus pattern (40 bp):
GCTAAAAACAGAGCATTAGCGGCGCTTTTGGAAAAACGCC
Found at i:121577567 original size:7 final size:7
Alignment explanation
Indices: 121577552--121577605 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
121577542 TTAATTATCA
*
121577552 TTATAGT
1 TTATGGT
121577559 TTATGGT
1 TTATGGT
121577566 TTATGGT
1 TTATGGT
* *
121577573 TTAAGAT
1 TTATGGT
*
121577580 ATATGGT
1 TTATGGT
*
121577587 TTAGGGT
1 TTATGGT
*
121577594 TTAAGGT
1 TTATGGT
121577601 TTATG
1 TTATG
121577606 AGTTATCTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (7 bp):
TTATGGT
Found at i:121577584 original size:21 final size:21
Alignment explanation
Indices: 121577560--121577644 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
121577550 CATTATAGTT
*
121577560 TATGGTTTATGGTTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
* *
121577581 TATGGTTTAGGGTTTAAGGTT
1 TATGGTTTAGGGTTTAAGATA
*
121577602 TATGAGTTATCTATGGTTTAAGATA
1 TATG-G-T-T-TAGGGTTTAAGATA
*
121577627 TATGATTTAGGGTTTAAG
1 TATGGTTTAGGGTTTAAG
121577645 GTTTAGGAGT
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
21 32 0.62
22 2 0.04
23 2 0.04
24 1 0.02
25 15 0.29
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.46
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:121577619 original size:46 final size:46
Alignment explanation
Indices: 121577567--121577656 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
121577557 GTTTATGGTT
* *
121577567 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTATC
1 TATGGTTTAAGATATATGATTTAGGGTTTAAGGTTTAGGAGTTATC
121577613 TATGGTTTAAGATATATGATTTAGGGTTTAAGGTTTAGGAGTTA
1 TATGGTTTAAGATATATGATTTAGGGTTTAAGGTTTAGGAGTTA
121577657 ACTAGTATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.44
Consensus pattern (46 bp):
TATGGTTTAAGATATATGATTTAGGGTTTAAGGTTTAGGAGTTATC
Found at i:121577708 original size:14 final size:15
Alignment explanation
Indices: 121577681--121577733 Score: 60
Period size: 14 Copynumber: 3.8 Consensus size: 15
121577671 GTTATGATGA
121577681 ATTATGAGTTTAGGG
1 ATTATGAGTTTAGGG
121577696 ATTATGA-TTTAGGG
1 ATTATGAGTTTAGGG
* *
121577710 TTTA-GAGGTTAGGG
1 ATTATGAGTTTAGGG
121577724 -TTA-GAGTTTA
1 ATTATGAGTTTA
121577734 AGGTGTAAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
13 11 0.32
14 16 0.47
15 7 0.21
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (15 bp):
ATTATGAGTTTAGGG
Found at i:121577729 original size:13 final size:14
Alignment explanation
Indices: 121577704--121577815 Score: 52
Period size: 14 Copynumber: 7.9 Consensus size: 14
121577694 GGATTATGAT
121577704 TTAGGGTTTAGAGG
1 TTAGGGTTTAGAGG
*
121577718 TTAGGG-TTAGAGT
1 TTAGGGTTTAGAGG
* *
121577731 TTAAGGTGTA-AGGG
1 TTAGGGTTTAGA-GG
* *
121577745 TTTGGGGTTA-AGGG
1 TTAGGGTTTAGA-GG
*
121577759 TTAAGGGTTTAGAGT
1 TT-AGGGTTTAGAGG
*
121577774 TTAGTGTTTATG-GG
1 TTAGGGTTTA-GAGG
* *
121577788 ATAGGGGTTAAGAGG
1 TTA-GGGTTTAGAGG
*
121577803 TTTAGAGTTTAGA
1 -TTAGGGTTTAGA
121577816 TTAATTAGTA
Statistics
Matches: 71, Mismatches: 19, Indels: 15
0.68 0.18 0.14
Matches are distributed among these distances:
13 12 0.17
14 32 0.45
15 24 0.34
16 3 0.04
ACGTcount: A:0.24, C:0.00, G:0.39, T:0.37
Consensus pattern (14 bp):
TTAGGGTTTAGAGG
Found at i:121577746 original size:21 final size:21
Alignment explanation
Indices: 121577704--121577776 Score: 62
Period size: 21 Copynumber: 3.5 Consensus size: 21
121577694 GGATTATGAT
*
121577704 TTAGGGTTTAGAGGT-T-AGGG
1 TTAGAGTTTA-AGGTGTAAGGG
121577724 TTAGAGTTTAAGGTGTAAGGG
1 TTAGAGTTTAAGGTGTAAGGG
* * *
121577745 TTTGGGGTTAAGG-GTTAAGGG
1 TTAGAGTTTAAGGTG-TAAGGG
121577766 TTTAGAGTTTA
1 -TTAGAGTTTA
121577777 GTGTTTATGG
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
19 4 0.10
20 11 0.26
21 20 0.48
22 7 0.17
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.37
Consensus pattern (21 bp):
TTAGAGTTTAAGGTGTAAGGG
Found at i:121578524 original size:62 final size:62
Alignment explanation
Indices: 121578449--121578574 Score: 252
Period size: 62 Copynumber: 2.0 Consensus size: 62
121578439 TTGTACTAAT
121578449 AATATATATTAATGTAATATTGAATAGTTAATTAATTAAAAATAATAAATGCAAGTACAAAA
1 AATATATATTAATGTAATATTGAATAGTTAATTAATTAAAAATAATAAATGCAAGTACAAAA
121578511 AATATATATTAATGTAATATTGAATAGTTAATTAATTAAAAATAATAAATGCAAGTACAAAA
1 AATATATATTAATGTAATATTGAATAGTTAATTAATTAAAAATAATAAATGCAAGTACAAAA
121578573 AA
1 AA
121578575 GAGCAAGATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.33
Consensus pattern (62 bp):
AATATATATTAATGTAATATTGAATAGTTAATTAATTAAAAATAATAAATGCAAGTACAAAA
Found at i:121583506 original size:45 final size:49
Alignment explanation
Indices: 121583414--121583508 Score: 135
Period size: 47 Copynumber: 2.0 Consensus size: 49
121583404 TTCTTCTTCT
121583414 CAATATTTTGATAATGAATTTTAATTTTTTTATATTTTTCAGGACTTTTA
1 CAATATTTTGATAAT-AATTTTAATTTTTTTATATTTTTCAGGACTTTTA
* *
121583464 CAATATTTT-ATAAT-ATTTTATTTTTTTTA-ATTTTT-ATGACTTTTA
1 CAATATTTTGATAATAATTTTAATTTTTTTATATTTTTCAGGACTTTTA
121583509 GTGCCGTTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
45 9 0.21
46 6 0.14
47 14 0.33
49 5 0.12
50 9 0.21
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.60
Consensus pattern (49 bp):
CAATATTTTGATAATAATTTTAATTTTTTTATATTTTTCAGGACTTTTA
Found at i:121586774 original size:30 final size:30
Alignment explanation
Indices: 121586740--121586799 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
121586730 CTTTAATGCG
* *
121586740 AACTTTTGCAAAATTATATTTTTGCCCCTA
1 AACTTTTGCAAAATTACACTTTTGCCCCTA
*
121586770 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTTGCAAAATTACACTTTTGCCCCTA
121586800 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (30 bp):
AACTTTTGCAAAATTACACTTTTGCCCCTA
Found at i:121588221 original size:29 final size:30
Alignment explanation
Indices: 121588180--121588239 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
121588170 TTATTTTAGA
121588180 AAAAATTTAAAATTTTAA-TTTTTTTATAT
1 AAAAATTTAAAATTTTAATTTTTTTTATAT
*
121588209 AAAATTTTAAAATTTTAATTTTTTTTATAT
1 AAAAATTTAAAATTTTAATTTTTTTTATAT
121588239 A
1 A
121588240 TTCTTTAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 17 0.59
30 12 0.41
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (30 bp):
AAAAATTTAAAATTTTAATTTTTTTTATAT
Found at i:121588246 original size:29 final size:28
Alignment explanation
Indices: 121588180--121588266 Score: 102
Period size: 29 Copynumber: 3.0 Consensus size: 28
121588170 TTATTTTAGA
*
121588180 AAAAATTTAAAATTTTAATTTTTTTATAT
1 AAAATTTTAAAATTTTAATTTTTTT-TAT
121588209 AAAATTTTAAAATTTTAATTTTTTTTAT
1 AAAATTTTAAAATTTTAATTTTTTTTAT
* * *
121588237 ATATTCTTTAAATGTTTTTAATTTTTTTTA
1 AAAAT-TTTAAA--ATTTTAATTTTTTTTA
121588267 GAAATATAGC
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
28 6 0.12
29 30 0.59
31 15 0.29
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (28 bp):
AAAATTTTAAAATTTTAATTTTTTTTAT
Found at i:121589788 original size:12 final size:12
Alignment explanation
Indices: 121589766--121589799 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
121589756 CTCCTGCTTA
*
121589766 TGTTATACTCTT
1 TGTTATGCTCTT
*
121589778 TGTTGTGCTCTT
1 TGTTATGCTCTT
121589790 TGTTATGCTC
1 TGTTATGCTC
121589800 CCATTGGTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.09, C:0.18, G:0.18, T:0.56
Consensus pattern (12 bp):
TGTTATGCTCTT
Found at i:121591995 original size:23 final size:23
Alignment explanation
Indices: 121591969--121592018 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
121591959 TTTATTATTA
121591969 ATTTAAAAAAATTTGA-AATATAT
1 ATTT-AAAAAATTTGATAATATAT
* * *
121591992 ATTTGAAATATTTTATAATATAT
1 ATTTAAAAAATTTGATAATATAT
121592015 ATTT
1 ATTT
121592019 TAAATTTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 8 0.35
23 15 0.65
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (23 bp):
ATTTAAAAAATTTGATAATATAT
Found at i:121592004 original size:22 final size:22
Alignment explanation
Indices: 121591979--121592050 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 22
121591969 ATTTAAAAAA
*
121591979 ATTTGAAATATATATTTGAAAT
1 ATTTAAAATATATATTTGAAAT
* *
121592001 ATTTTATAATATATATTTTAAAT
1 A-TTTAAAATATATATTTGAAAT
121592024 -TTTAAATATATATATTTGAAATT
1 ATTTAAA-ATATATATTTGAAA-T
121592047 ATTT
1 ATTT
121592051 TTTTAAATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
21 5 0.12
22 14 0.34
23 19 0.46
24 3 0.07
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (22 bp):
ATTTAAAATATATATTTGAAAT
Found at i:121592056 original size:35 final size:33
Alignment explanation
Indices: 121591999--121592114 Score: 128
Period size: 35 Copynumber: 3.4 Consensus size: 33
121591989 TATATTTGAA
*
121591999 ATATTTT-ATAATATATATTTTAAATTTTAAATAT
1 ATATTTTGA-AAT-TATTTTTTAAATTTTAAATAT
*
121592033 ATATATTTGAAATTATTTTTTTAAATTTTGAATATT
1 ATAT-TTTGAAATTA-TTTTTTAAATTTTAAATA-T
* *
121592069 ATTTTTTGAATATTATTTTTTAAATATTAAATAT
1 ATATTTTGAA-ATTATTTTTTAAATTTTAAATAT
121592103 ATATTTT-AAATT
1 ATATTTTGAAATT
121592115 TAAATTTTAA
Statistics
Matches: 71, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
32 3 0.04
33 2 0.03
34 13 0.18
35 44 0.62
36 9 0.13
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.58
Consensus pattern (33 bp):
ATATTTTGAAATTATTTTTTAAATTTTAAATAT
Found at i:121592096 original size:11 final size:14
Alignment explanation
Indices: 121592058--121592097 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
121592048 TTTTTTTAAA
121592058 TTTTGAATATTATT
1 TTTTGAATATTATT
121592072 TTTTGAATATTATT
1 TTTTGAATATTATT
*
121592086 TTTTAAATATTA
1 TTTTGAATATTA
121592098 AATATATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (14 bp):
TTTTGAATATTATT
Found at i:121592150 original size:55 final size:58
Alignment explanation
Indices: 121592091--121592197 Score: 166
Period size: 56 Copynumber: 1.9 Consensus size: 58
121592081 TTATTTTTTA
* *
121592091 AATATTAAATATATA-TTTTAAATTTAAATTTTAAT-AT-ATATATTTTTAAAAATTT
1 AATATTAAATATATATTTTTAAATATAAATTTTAATAATAATATATATTTAAAAATTT
*
121592146 AATATTAAATATATATTTTTAAATATAAATTTTATTAATAATATATATTTAA
1 AATATTAAATATATATTTTTAAATATAAATTTTAATAATAATATATATTTAA
121592198 TTTTTTAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
55 15 0.33
56 18 0.39
57 2 0.04
58 11 0.24
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (58 bp):
AATATTAAATATATATTTTTAAATATAAATTTTAATAATAATATATATTTAAAAATTT
Found at i:121592167 original size:14 final size:14
Alignment explanation
Indices: 121592095--121592197 Score: 84
Period size: 14 Copynumber: 7.3 Consensus size: 14
121592085 TTTTTAAATA
121592095 TTAAATATATA-TT
1 TTAAATATATATTT
* *
121592108 TTAAATTTA-AATT
1 TTAAATATATATTT
121592121 TTAATATATATATTT
1 TTAA-ATATATATTT
* * * *
121592136 TTAAAAATTTAATA
1 TTAAATATATATTT
121592150 TTAAATATATATTT
1 TTAAATATATATTT
*
121592164 TTAAATATAAATTT
1 TTAAATATATATTT
* *
121592178 TATTAATAATATATAT
1 T-TAAAT-ATATATTT
121592194 TTAA
1 TTAA
121592198 TTTTTTAAAA
Statistics
Matches: 69, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
12 1 0.01
13 14 0.20
14 34 0.49
15 13 0.19
16 7 0.10
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TTAAATATATATTT
Found at i:121592182 original size:30 final size:30
Alignment explanation
Indices: 121592093--121592195 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 30
121592083 ATTTTTTAAA
*
121592093 TATTAAATATATA-TTTTAAATTTAAATTT
1 TATTAAATATATATTTTTAAATATAAATTT
*
121592122 TA--ATATATATATTTTT--A-A-AAATTT
1 TATTAAATATATATTTTTAAATATAAATTT
121592146 AATATTAAATATATATTTTTAAATATAAATTT
1 --TATTAAATATATATTTTTAAATATAAATTT
121592178 TATTAATAATATATATTT
1 TATT-A-AATATATATTT
121592196 AATTTTTTAA
Statistics
Matches: 60, Mismatches: 3, Indels: 19
0.73 0.04 0.23
Matches are distributed among these distances:
24 6 0.10
26 3 0.05
27 8 0.13
28 17 0.28
29 2 0.03
30 5 0.08
31 2 0.03
32 17 0.28
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (30 bp):
TATTAAATATATATTTTTAAATATAAATTT
Found at i:121592294 original size:23 final size:23
Alignment explanation
Indices: 121592244--121592294 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
121592234 TAAAATTTAA
*
121592244 AAAATATATATTATAAAATATTT
1 AAAATATACATTATAAAATATTT
* * * *
121592267 CAAATATACATTTTAAATTTTTT
1 AAAATATACATTATAAAATATTT
121592290 AAAAT
1 AAAAT
121592295 TAATAATAAA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (23 bp):
AAAATATACATTATAAAATATTT
Found at i:121592331 original size:5 final size:5
Alignment explanation
Indices: 121592321--121592356 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
121592311 GCAAAATAAG
121592321 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAGA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAA-A TAAAA
121592357 ACAAAATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (5 bp):
TAAAA
Found at i:121592341 original size:15 final size:16
Alignment explanation
Indices: 121592313--121592356 Score: 67
Period size: 15 Copynumber: 2.9 Consensus size: 16
121592303 AAAAATAAGC
121592313 AAAAT-AAG-TAAAAT
1 AAAATAAAGATAAAAT
121592327 AAAATAAA-ATAAAAT
1 AAAATAAAGATAAAAT
121592342 AAAATAAAGATAAAA
1 AAAATAAAGATAAAA
121592357 ACAAAATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.19
15 16 0.59
16 6 0.22
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (16 bp):
AAAATAAAGATAAAAT
Found at i:121592700 original size:26 final size:27
Alignment explanation
Indices: 121592651--121592701 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
121592641 TAGATTTCAA
* *
121592651 GTCATTTTTATATTTAATTCAAAATGG
1 GTCATTTTGATAATTAATTCAAAATGG
121592678 GTCATTTTGATAATTAATT-AAAAT
1 GTCATTTTGATAATTAATTCAAAAT
121592702 TTTTGAGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.47
Consensus pattern (27 bp):
GTCATTTTGATAATTAATTCAAAATGG
Found at i:121593313 original size:20 final size:20
Alignment explanation
Indices: 121593275--121593313 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
121593265 AAATAACATA
* *
121593275 TTATTTTATAATTTCATTTC
1 TTATTTAATAATTTAATTTC
*
121593295 TTATTTAATATTTTAATTT
1 TTATTTAATAATTTAATTT
121593314 AATTTTAATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (20 bp):
TTATTTAATAATTTAATTTC
Found at i:121593382 original size:2 final size:2
Alignment explanation
Indices: 121593375--121593399 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
121593365 CTAATATGAT
121593375 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
121593400 TTACGCATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:121593898 original size:2 final size:2
Alignment explanation
Indices: 121593891--121593919 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
121593881 ACATTCGTAA
121593891 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
121593920 ATCATATTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:121594124 original size:2 final size:2
Alignment explanation
Indices: 121594117--121594141 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
121594107 ACATGCGTAA
121594117 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
121594142 ATCATATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:121594789 original size:5 final size:6
Alignment explanation
Indices: 121594761--121594789 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
121594751 TTTAGTTATC
121594761 TTAAAT TTAAAT TTAAAT TTAAA- TTAAAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
121594790 AAAACATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
TTAAAT
Found at i:121594929 original size:21 final size:21
Alignment explanation
Indices: 121594900--121594940 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
121594890 ATGATAATTA
121594900 AATAATATTTATATTTATGAT
1 AATAATATTTATATTTATGAT
*
121594921 AATATTATTTATATTTATGA
1 AATAATATTTATATTTATGA
121594941 ATATTTCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (21 bp):
AATAATATTTATATTTATGAT
Found at i:121595196 original size:15 final size:14
Alignment explanation
Indices: 121595177--121595223 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
121595167 TATTTATAAA
121595177 ATTTTAAAATATAT
1 ATTTTAAAATATAT
* *
121595191 ATTTTTAGATTATAT
1 A-TTTTAAAATATAT
121595206 ATTTTAAAAT-T-T
1 ATTTTAAAATATAT
121595218 ATTTTA
1 ATTTTA
121595224 TTTTTATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 7 0.25
13 1 0.04
14 8 0.29
15 12 0.43
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (14 bp):
ATTTTAAAATATAT
Found at i:121598697 original size:10 final size:10
Alignment explanation
Indices: 121598682--121598711 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
121598672 ATACATCTGT
121598682 TTGCAATTGA
1 TTGCAATTGA
121598692 TTGCAATTGA
1 TTGCAATTGA
121598702 TTGCAATTGA
1 TTGCAATTGA
121598712 ACAACTCCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (10 bp):
TTGCAATTGA
Found at i:121602625 original size:22 final size:21
Alignment explanation
Indices: 121602599--121602667 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
121602589 CACAGGAGGC
121602599 AATAAACTAAACATGCATTTAT
1 AATAAACTAAACATG-ATTTAT
* * * **
121602621 AAT-AAGTTATCAT-ATGAGAT
1 AATAAACTAAACATGAT-TTAT
121602641 AATAAACTAAACATGTATTTAT
1 AATAAACTAAACATG-ATTTAT
121602663 AATAA
1 AATAA
121602668 GTCATCACAT
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 14 0.42
22 10 0.30
23 2 0.06
ACGTcount: A:0.51, C:0.09, G:0.07, T:0.33
Consensus pattern (21 bp):
AATAAACTAAACATGATTTAT
Found at i:121602645 original size:42 final size:42
Alignment explanation
Indices: 121602580--121602689 Score: 166
Period size: 42 Copynumber: 2.6 Consensus size: 42
121602570 TGTATCTGTC
* **
121602580 ATAAGTCATCACAGGAGGCAATAAACTAAACATGCATTTATA
1 ATAAGTCATCACATGAGATAATAAACTAAACATGCATTTATA
* * *
121602622 ATAAGTTATCATATGAGATAATAAACTAAACATGTATTTATA
1 ATAAGTCATCACATGAGATAATAAACTAAACATGCATTTATA
121602664 ATAAGTCATCACATGAGATAATAAAC
1 ATAAGTCATCACATGAGATAATAAAC
121602690 ATGTATCAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.47, C:0.13, G:0.12, T:0.28
Consensus pattern (42 bp):
ATAAGTCATCACATGAGATAATAAACTAAACATGCATTTATA
Found at i:121605139 original size:14 final size:14
Alignment explanation
Indices: 121605120--121605151 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
121605110 AGTCCTATGC
121605120 GTGTTCCCACGTGT
1 GTGTTCCCACGTGT
*
121605134 GTGTTCGCACGTGT
1 GTGTTCCCACGTGT
121605148 GTGT
1 GTGT
121605152 GTTCGCATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.06, C:0.22, G:0.34, T:0.38
Consensus pattern (14 bp):
GTGTTCCCACGTGT
Found at i:121609221 original size:2 final size:2
Alignment explanation
Indices: 121609214--121609246 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
121609204 TTTGTCAAGT
121609214 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121609247 TATTGTGAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:121612007 original size:33 final size:35
Alignment explanation
Indices: 121611927--121612009 Score: 98
Period size: 37 Copynumber: 2.4 Consensus size: 35
121611917 TTCCATTCAG
*
121611927 AATAAATTGAATATTACAAACAAAATTATATTAAT
1 AATAAATTAAATATTACAAACAAAATTATATTAAT
** *
121611962 AGAATAAATTAAATATTAC-AATGAAATTATGTTAAT
1 --AATAAATTAAATATTACAAACAAAATTATATTAAT
121611998 -ATAAATTAAATA
1 AATAAATTAAATA
121612010 CCCATGTTGG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
33 12 0.29
36 14 0.33
37 16 0.38
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.35
Consensus pattern (35 bp):
AATAAATTAAATATTACAAACAAAATTATATTAAT
Found at i:121613215 original size:26 final size:26
Alignment explanation
Indices: 121613176--121613363 Score: 299
Period size: 26 Copynumber: 7.2 Consensus size: 26
121613166 TGATACAAAT
121613176 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
121613202 TGATAATAGATTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
121613228 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
121613254 TGATAATGGGTTAGGTAAATGCTT-CA
1 TGATAATAGGTTAGGTAAATG-TTCCA
121613280 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
121613306 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
121613332 TGATAAT-GAGTTAGGTAAATGTTTCA
1 TGATAATAG-GTTAGGTAAATGTTCCA
121613358 TGATAA
1 TGATAA
121613364 GAATTTCATG
Statistics
Matches: 153, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
25 3 0.02
26 148 0.97
27 2 0.01
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Done.