Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 391 of 433
Found at i:121615392 original size:137 final size:137
Alignment explanation
Indices: 121615146--121615432 Score: 529
Period size: 137 Copynumber: 2.1 Consensus size: 137
121615136 GAGTAGTCTC
121615146 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
121615211 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTATAATCTGAAAAGAGCTCTGGCCCAGTACC
121615276 ACTGTTA
131 ACTGTTA
121615283 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
121615348 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTATAATCTGAAAAGAGCTCTGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTATAATCTGAAAAGAGCTCTGGCCCAGTACC
121615413 ACTGTTA
131 ACTGTTA
**
121615420 CCTGAATGGGCTT
1 CCCAAATGGGCTT
121615433 AGGCCCAATA
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 145 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTATAATCTGAAAAGAGCTCTGGCCCAGTACC
ACTGTTA
Found at i:121616502 original size:3 final size:3
Alignment explanation
Indices: 121616494--121616521 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
121616484 GAATCGTGAA
121616494 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
121616522 TATCTAAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:121616765 original size:40 final size:41
Alignment explanation
Indices: 121616721--121616850 Score: 124
Period size: 41 Copynumber: 3.2 Consensus size: 41
121616711 TATTATACAT
*
121616721 TAGCGGCGTTTGCAAT-AAAACGCCGCAAAAAACTGAGCAA
1 TAGCGGCGTTTGCAATAAAAACGCCGCTAAAAACTGAGCAA
** *
121616761 TAGCGGCGCTTTTG--ATCCAAACGCCGCTAAAAA-TAGAGTAA
1 TAGCGGCG--TTTGCAATAAAAACGCCGCTAAAAACT-GAGCAA
* * * * *
121616802 TAGTGGCGTTTTCAGTAAAAACGCCGCTAAAATCTGAACAA
1 TAGCGGCGTTTGCAATAAAAACGCCGCTAAAAACTGAGCAA
121616843 TAGCGGCG
1 TAGCGGCG
121616851 CTTTTGAAAA
Statistics
Matches: 71, Mismatches: 12, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
39 3 0.04
40 11 0.15
41 52 0.73
42 5 0.07
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (41 bp):
TAGCGGCGTTTGCAATAAAAACGCCGCTAAAAACTGAGCAA
Found at i:121616793 original size:41 final size:42
Alignment explanation
Indices: 121616737--121616870 Score: 143
Period size: 41 Copynumber: 3.3 Consensus size: 42
121616727 CGTTTGCAAT
* *
121616737 AAAACGCCGCAAAAAACTGAGCAATAGCGGCGCTTTTGA-TC
1 AAAACGCCGCTAAAAACTGAGCAATAGCGGCGCTTTTGAGTA
* * * *
121616778 CAAACGCCGCTAAAAA-TAGAGTAATAGTGGCG-TTTTCAGTA
1 AAAACGCCGCTAAAAACT-GAGCAATAGCGGCGCTTTTGAGTA
* *
121616819 AAAACGCCGCTAAAATCTGAACAATAGCGGCGCTTTTGA--A
1 AAAACGCCGCTAAAAACTGAGCAATAGCGGCGCTTTTGAGTA
*
121616859 AAAATGCCGCTA
1 AAAACGCCGCTA
121616871 TAGGTTGAGC
Statistics
Matches: 76, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
40 18 0.24
41 52 0.68
42 6 0.08
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.20
Consensus pattern (42 bp):
AAAACGCCGCTAAAAACTGAGCAATAGCGGCGCTTTTGAGTA
Found at i:121616862 original size:40 final size:38
Alignment explanation
Indices: 121616695--121616870 Score: 115
Period size: 41 Copynumber: 4.4 Consensus size: 38
121616685 GGCGTTTGGA
*
121616695 GAAAAAACGCCGC-AAATATT-ATACATTAGCGGCG-TTT
1 GAAAAAACGCCGCTAAA-ATTGA-ACAATAGCGGCGTTTT
* * *
121616732 GCAATAAAACGCCGCAAAAAACTGAGCAATAGCGGCGCTTTT
1 G-AA-AAAACGCCGC-TAAAATTGAACAATAGCGGCG-TTTT
** * ** *
121616774 GATCCAAACGCCGCTAAAAATAGAGTAATAGTGGCGTTTT
1 GA-AAAAACGCCGCT-AAAATTGAACAATAGCGGCGTTTT
*
121616814 CAGTAAAAACGCCGCTAAAATCTGAACAATAGCGGCGCTTTT
1 --GAAAAAACGCCGCTAAAAT-TGAACAATAGCGGCG-TTTT
*
121616856 GAAAAAATGCCGCTA
1 GAAAAAACGCCGCTA
121616871 TAGGTTGAGC
Statistics
Matches: 107, Mismatches: 19, Indels: 23
0.72 0.13 0.15
Matches are distributed among these distances:
37 1 0.01
38 2 0.02
39 10 0.09
40 34 0.32
41 51 0.48
42 9 0.08
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (38 bp):
GAAAAAACGCCGCTAAAATTGAACAATAGCGGCGTTTT
Found at i:121616895 original size:41 final size:41
Alignment explanation
Indices: 121616843--121617114 Score: 368
Period size: 41 Copynumber: 6.6 Consensus size: 41
121616833 ATCTGAACAA
* * * *
121616843 TAGCGGCGCTTTTGAAAAAATGCCGCTATAGGTTGAGCTTT
1 TAGCGGCGCTTTTGAAAAAACGCCGCTATAGATCGAGGTTT
* * * *
121616884 TAGCGGCGCTTTTTG-AAAAACGGCGCTATTGCTC-AGTTTT
1 TAGCGGCGC-TTTTGAAAAAACGCCGCTATAGATCGAGGTTT
* *
121616924 TAACGGCGCTTTTGGAAAAAACGCCACTATAGATCGAGGTTT
1 TAGCGGCGCTTTT-GAAAAAACGCCGCTATAGATCGAGGTTT
**
121616966 TAGCGGCGCTTTTGGGAAAACGCCGCTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGAAAAAACGCCGCTATAGATCGAGGTTT
121617007 TAGCGGCGCTTTTGAAAAAACGCCGCTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGAAAAAACGCCGCTATAGATCGAGGTTT
* *
121617048 TCGCGGCGCTTTTGAAAAAACGTCGCTATAGATCGAGGTTT
1 TAGCGGCGCTTTTGAAAAAACGCCGCTATAGATCGAGGTTT
**
121617089 TAGCGGCGCTTTTGGGAAAACGCCGC
1 TAGCGGCGCTTTTGAAAAAACGCCGC
121617115 AAAAAATTAA
Statistics
Matches: 203, Mismatches: 24, Indels: 8
0.86 0.10 0.03
Matches are distributed among these distances:
39 4 0.02
40 14 0.07
41 163 0.80
42 22 0.11
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (41 bp):
TAGCGGCGCTTTTGAAAAAACGCCGCTATAGATCGAGGTTT
Found at i:121617274 original size:2 final size:2
Alignment explanation
Indices: 121617267--121617302 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
121617257 ATTATTTTAA
121617267 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121617303 CAAAATGGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121617594 original size:22 final size:22
Alignment explanation
Indices: 121617569--121617611 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
121617559 ATTTTAAGCT
*
121617569 TTATAGATTATGGGTTTAGGGA
1 TTATAGATTATGGGTTAAGGGA
* *
121617591 TTATGGTTTATGGGTTAAGGG
1 TTATAGATTATGGGTTAAGGG
121617612 TTAGGGTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.35, T:0.42
Consensus pattern (22 bp):
TTATAGATTATGGGTTAAGGGA
Found at i:121617690 original size:29 final size:29
Alignment explanation
Indices: 121617580--121617673 Score: 78
Period size: 23 Copynumber: 3.5 Consensus size: 29
121617570 TATAGATTAT
* * *
121617580 GGGTTTAGGGATTATGGTTTATGG-GTTAA
1 GGGTTAAGGGTTTAAGGTTTA-GGAGTTAA
*
121617609 GGGTT-AGGGTTTAAGTTTTA-GAG----
1 GGGTTAAGGGTTTAAGGTTTAGGAGTTAA
*
121617632 GGGTT-GGGGTTTAAGGTTTAGGAGTTAA
1 GGGTTAAGGGTTTAAGGTTTAGGAGTTAA
121617660 GGGTTAAGGGTTTA
1 GGGTTAAGGGTTTA
121617674 TGTTTTATGA
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
23 18 0.35
24 3 0.06
26 1 0.02
27 1 0.02
28 17 0.33
29 12 0.23
ACGTcount: A:0.21, C:0.00, G:0.40, T:0.38
Consensus pattern (29 bp):
GGGTTAAGGGTTTAAGGTTTAGGAGTTAA
Found at i:121617699 original size:29 final size:29
Alignment explanation
Indices: 121617595--121617699 Score: 82
Period size: 29 Copynumber: 3.9 Consensus size: 29
121617585 TAGGGATTAT
121617595 GGTTTATGG-GTTAAGGGTTA-GGGTTTAA
1 GGTTTA-GGAGTTAAGGGTTAGGGGTTTAA
*
121617623 GTTTTA-GAG----GGGTT-GGGGTTTAA
1 GGTTTAGGAGTTAAGGGTTAGGGGTTTAA
* *
121617646 GGTTTAGGAGTTAAGGGTTAAGGGTTTAT
1 GGTTTAGGAGTTAAGGGTTAGGGGTTTAA
* * * *
121617675 GTTTTATGATTTAAGGTTTAGGGGT
1 GGTTTAGGAGTTAAGGGTTAGGGGT
121617700 CAGAGGTCAG
Statistics
Matches: 60, Mismatches: 9, Indels: 15
0.71 0.11 0.18
Matches are distributed among these distances:
23 18 0.30
24 3 0.05
26 1 0.02
27 1 0.02
28 10 0.17
29 27 0.45
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (29 bp):
GGTTTAGGAGTTAAGGGTTAGGGGTTTAA
Found at i:121619857 original size:23 final size:23
Alignment explanation
Indices: 121619831--121619876 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
121619821 ACTAGAAAAC
121619831 ATCTGTTAAATCGGATTAGGTGG
1 ATCTGTTAAATCGGATTAGGTGG
121619854 ATCTGTTAAATCGGATTAGGTGG
1 ATCTGTTAAATCGGATTAGGTGG
121619877 CATTTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.09, G:0.30, T:0.35
Consensus pattern (23 bp):
ATCTGTTAAATCGGATTAGGTGG
Found at i:121622965 original size:18 final size:17
Alignment explanation
Indices: 121622929--121622971 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
121622919 TCAAATTTCA
*
121622929 AAAATTAAACATAATAT
1 AAAATTAAACATAAAAT
*
121622946 AAAATTTAACATAAAAAT
1 AAAATTAAACAT-AAAAT
121622964 AAATATTA
1 AAA-ATTA
121622972 TTTAATTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 11 0.52
18 7 0.33
19 3 0.14
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAATTAAACATAAAAT
Found at i:121623058 original size:43 final size:43
Alignment explanation
Indices: 121622997--121623135 Score: 172
Period size: 43 Copynumber: 3.3 Consensus size: 43
121622987 ATAATTTTTT
* *
121622997 TAAAGTTCATGATTTTTAGCGGCGTTTGTGAGAAAAGCGCCGC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTGAGAAAAGCGCCGC
* * * *
121623040 TAAAGGTCATGATCTTTAGCGGCATTTGCGGGAAAAGCGTCGC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTGAGAAAAGCGCCGC
* * * *
121623083 TAAAGGTCATGGTCTTTAGCGGTGTTTGT-AAAAAAACGCCGC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTGAGAAAAGCGCCGC
*
121623125 TAAAAGTCATG
1 TAAAGGTCATG
121623136 GTCAATAAAC
Statistics
Matches: 81, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 19 0.23
43 62 0.77
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (43 bp):
TAAAGGTCATGATCTTTAGCGGCGTTTGTGAGAAAAGCGCCGC
Found at i:121624381 original size:126 final size:125
Alignment explanation
Indices: 121624052--121624551 Score: 578
Period size: 125 Copynumber: 4.0 Consensus size: 125
121624042 AGGCCAAGCG
* * * * *
121624052 GGAACTAATGTAGAAAAAGAGCGCCCATGTGTGATCTTTTTTCAGTAATTTTGCTAACAATGCAT
1 GGAACTAATGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCAT
* * **
121624117 CCTCCTTGAAGCGTTTTTGACACTATTTTTTCAGAACTGTCTTCTAAAAACTT-TTTTTTCA
66 CCTGCTTAAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTAAAAA-TTATTTTTT-A
* * * * * ** * *
121624178 GAAACTACTGTAGAAAAAAAGAGTCCACATAAGAGCTTTTTT-AGTAACTTTGCTGACAGTGCAT
1 GGAACTAATGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCAT
* ** * ** *
121624242 TCTGCTTGGAGCGTTTTTTACACTATTTTTTCAGAACTGTCTTCTCAAAATTAGTTTTTTA
66 CCTGCTTAAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTAAAAATTA-TTTTTTA
*
121624303 GGACCTAATGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCAT
1 GGAACTAATGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCAT
*
121624368 CCTGCTTAAAGCGTTTTTGACACTATTTTCTT-AGAACCATCTTCTAAAAATTATTTTTCA
66 CCTGCTTAAAGCGTTTTTGACACTATTTT-TTCAGAACCATCTTCTAAAAATTATTTTTTA
* * * * * *
121624428 AGAACTACTGTAGAAAAAGAGTGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCAT
1 GGAACTAATGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCAT
* * * *
121624493 CCTGCTTGAAA-CATTTTTGACA-TGATCTTTTCAGAACCATCTTCTTAAAATTAATTTTT
66 CCTGCTT-AAAGCGTTTTTGACACT-ATTTTTTCAGAACCATCTTCTAAAAATTATTTTTT
121624552 CTGAAACTAT
Statistics
Matches: 319, Mismatches: 48, Indels: 15
0.84 0.13 0.04
Matches are distributed among these distances:
124 5 0.02
125 208 0.65
126 104 0.33
127 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (125 bp):
GGAACTAATGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCAT
CCTGCTTAAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTAAAAATTATTTTTTA
Found at i:121624500 original size:251 final size:251
Alignment explanation
Indices: 121624056--121624551 Score: 676
Period size: 251 Copynumber: 2.0 Consensus size: 251
121624046 CAAGCGGGAA
* * *
121624056 CTAATGTAGAAAAAGAGCGCCCATGTGTGATCTTTTTTCAGTAATTTTGCTAACAATGCATCCTC
1 CTAATGTAGAAAAAGAGCGCCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAATGCATCCTC
* ** *
121624121 CTTGAAGCGTTTTTGACACTATTTTTTCAGAACTGTCTTCTAAAAACTTTTTTTTCAGAAACTAC
66 CTTAAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTAAAAACTTATTTTTCAGAAACTAC
* *
121624186 TGTAGAAAAAAAGAGTCCACATAAGAGCTTTTTTAGTAACTTTGCTGACAGTGCATTCTGCTTGG
131 TGTAGAAAAAAAGAGTCCACATAAGAGCTTTTTTAGTAACTTTGCTGACAGTGCATCCTGCTTGA
* * * * ** *
121624251 AGCGTTTTTTACACT-ATTTTTTCAGAACTGTCTTCTCAAAATTAGTTTTTTAGGAC
196 AACATTTTTGACA-TGATCTTTTCAGAACCATCTTCTCAAAATTAATTTTTTAGGAC
* * *
121624307 CTAATGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATCCTG
1 CTAATGTAGAAAAAGAGCGCCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAATGCATCCTC
121624372 CTTAAAGCGTTTTTGACACTATTTTCTT-AGAACCATCTTCTAAAAA-TTATTTTTCA-AGAACT
66 CTTAAAGCGTTTTTGACACTATTTT-TTCAGAACCATCTTCTAAAAACTTATTTTTCAGA-AACT
* * ** ** * *
121624434 ACTGTAGAAAAAGAGTGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCATCCTGCT
129 ACTGTAGAAAAAAAGAGTCCACATAAGAGCTTTTTT-AGTAACTTTGCTGACAGTGCATCCTGCT
*
121624499 TGAAACATTTTTGACATGATCTTTTCAGAACCATCTTCTTAAAATTAATTTTT
193 TGAAACATTTTTGACATGATCTTTTCAGAACCATCTTCTCAAAATTAATTTTT
121624552 CTGAAACTAT
Statistics
Matches: 213, Mismatches: 28, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
249 1 0.00
250 44 0.21
251 166 0.78
252 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (251 bp):
CTAATGTAGAAAAAGAGCGCCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAATGCATCCTC
CTTAAAGCGTTTTTGACACTATTTTTTCAGAACCATCTTCTAAAAACTTATTTTTCAGAAACTAC
TGTAGAAAAAAAGAGTCCACATAAGAGCTTTTTTAGTAACTTTGCTGACAGTGCATCCTGCTTGA
AACATTTTTGACATGATCTTTTCAGAACCATCTTCTCAAAATTAATTTTTTAGGAC
Found at i:121624669 original size:34 final size:33
Alignment explanation
Indices: 121624638--121624747 Score: 139
Period size: 34 Copynumber: 3.2 Consensus size: 33
121624628 TTAAAAAAAA
121624638 CTAAACCTTAATTTAATTAATTTTCTTAAAAACC
1 CTAAACCTTAATTTAATTAATTTT-TTAAAAACC
* *
121624672 CTAAACCCTAATTTAATTAATTTATTTAAAAAGC
1 CTAAACCTTAATTTAATTAATTT-TTTAAAAACC
* * * *
121624706 CTAAAACATAATTTAATTATTTTTTTGAAAAACT
1 CTAAACCTTAATTTAATTAATTTTTT-AAAAACC
121624740 CTAAACCT
1 CTAAACCT
121624748 GATTTATTTT
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
33 3 0.05
34 61 0.94
35 1 0.02
ACGTcount: A:0.43, C:0.15, G:0.02, T:0.40
Consensus pattern (33 bp):
CTAAACCTTAATTTAATTAATTTTTTAAAAACC
Found at i:121625208 original size:3 final size:3
Alignment explanation
Indices: 121625200--121625250 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
121625190 AAGATATTAG
121625200 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
121625248 AAT
1 AAT
121625251 TATTATTATT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:121625255 original size:3 final size:3
Alignment explanation
Indices: 121625249--121625281 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
121625239 AATAATAATA
121625249 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
121625282 TGGAATGGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:121637373 original size:33 final size:32
Alignment explanation
Indices: 121637336--121637412 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 32
121637326 TGGCATTGCC
*
121637336 ATGGTCTTACATTCAT-AATGCCATAACCCAGTT
1 ATGGTCTTACA-TC-TGAATGCCATAACCCAGCT
* *
121637369 ATGGTCTTATCATCTGGATGCCATAGCCCAGCT
1 ATGGTCTTA-CATCTGAATGCCATAACCCAGCT
121637402 ATGGTCTTACA
1 ATGGTCTTACA
121637413 CACACACACA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
32 3 0.08
33 34 0.87
34 2 0.05
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (32 bp):
ATGGTCTTACATCTGAATGCCATAACCCAGCT
Found at i:121637431 original size:2 final size:2
Alignment explanation
Indices: 121637426--121637464 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
121637416 ACACACACAC
*
121637426 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
121637465 AAGTGCTATG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:121643255 original size:25 final size:25
Alignment explanation
Indices: 121643221--121643271 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
121643211 CGAACTTTCA
121643221 AAAGGTATTCTCTTTATGTATCCTT
1 AAAGGTATTCTCTTTATGTATCCTT
121643246 AAAGGTATTCTCTTTATGTATCCTT
1 AAAGGTATTCTCTTTATGTATCCTT
121643271 A
1 A
121643272 CTCTTGAAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (25 bp):
AAAGGTATTCTCTTTATGTATCCTT
Found at i:121648026 original size:19 final size:18
Alignment explanation
Indices: 121648004--121648043 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
121647994 AAAATTTTAA
121648004 TTTTTG-TTAAAAAGTATT
1 TTTTTGATTAAAAA-TATT
121648022 TTTTTGACTTAAAAATATT
1 TTTTTGA-TTAAAAATATT
121648041 TTT
1 TTT
121648044 GAGAAGTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 6 0.30
19 7 0.35
20 7 0.35
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (18 bp):
TTTTTGATTAAAAATATT
Found at i:121651059 original size:24 final size:24
Alignment explanation
Indices: 121651016--121651078 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
121651006 TTCAGGCTAT
*
121651016 ATAACGGGAAGCT-TATAAGAGCCA
1 ATAACGGGAAGCTCCA-AAGAGCCA
* *
121651040 ATAATGGGTAGCTCCAAAGAGCCA
1 ATAACGGGAAGCTCCAAAGAGCCA
*
121651064 TTAACGGGAAGCTCC
1 ATAACGGGAAGCTCC
121651079 GGATAGCCAT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
24 31 0.97
25 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (24 bp):
ATAACGGGAAGCTCCAAAGAGCCA
Found at i:121652685 original size:12 final size:12
Alignment explanation
Indices: 121652668--121652697 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
121652658 ATACACTTCT
*
121652668 TCATTTATAAAA
1 TCATTTAGAAAA
121652680 TCATTTAGAAAA
1 TCATTTAGAAAA
121652692 TCATTT
1 TCATTT
121652698 TTTACATCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.43
Consensus pattern (12 bp):
TCATTTAGAAAA
Found at i:121660204 original size:96 final size:96
Alignment explanation
Indices: 121660008--121660225 Score: 246
Period size: 96 Copynumber: 2.3 Consensus size: 96
121659998 CTCATAATGT
* * *
121660008 TGCCATGTCCCAGACTTGGTCTTACACGAAATCACATATCGATCTCGATGCCATGTCCCAGACAT
1 TGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCGAACCCGATGCCATGTCCCAGACAT
* ** *
121660073 GATTTTACATTGGCTCACACGTCGAGGCCGA
66 GATCTTACACGGGATCACACGTCGAGGCCGA
* * *
121660104 TGCCATGTCCCAGACATAGTCGTACAC-TAATACACATATC-AACACCGATGCCATGTCCCAGAC
1 TGCCATGTCCCAGACATGGTCTTACACGAAAT-CACATATCGAAC-CCGATGCCATGTCCCAGAC
* * * *
121660167 ATGGTCTTATACGGGATCTCATC-TCGATGCC-A
64 ATGATCTTACACGGGATCACA-CGTCGAGGCCGA
121660199 GTGCCATGTCCCAGACATGGTCTTACA
1 -TGCCATGTCCCAGACATGGTCTTACA
121660226 TGGGACCTCA
Statistics
Matches: 102, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
95 6 0.06
96 95 0.93
97 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (96 bp):
TGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCGAACCCGATGCCATGTCCCAGACAT
GATCTTACACGGGATCACACGTCGAGGCCGA
Found at i:121664769 original size:2 final size:2
Alignment explanation
Indices: 121664762--121664800 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
121664752 AGAAAAGTTA
121664762 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
121664801 GAACAAAGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:121677816 original size:9 final size:9
Alignment explanation
Indices: 121677798--121677828 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
121677788 TTTTCTTGGT
*
121677798 TTTCTTGGA
1 TTTCTAGGA
121677807 TTTCTAGGA
1 TTTCTAGGA
121677816 TTTCTAGGA
1 TTTCTAGGA
121677825 TTTC
1 TTTC
121677829 CACGATATCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.16, C:0.13, G:0.19, T:0.52
Consensus pattern (9 bp):
TTTCTAGGA
Found at i:121683202 original size:9 final size:9
Alignment explanation
Indices: 121683180--121683240 Score: 50
Period size: 9 Copynumber: 6.3 Consensus size: 9
121683170 TGAATACTAT
121683180 AAAATTATA
1 AAAATTATA
* *
121683189 GAAATTTTA
1 AAAATTATA
121683198 AAAATTATAA
1 AAAATTAT-A
121683208 AAAATTTATA
1 AAAA-TTATA
*
121683218 GAAACACTATA
1 -AAA-ATTATA
*
121683229 ATAATTATA
1 AAAATTATA
121683238 AAA
1 AAA
121683241 TATATTAATA
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
9 20 0.50
10 8 0.20
11 11 0.28
12 1 0.03
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (9 bp):
AAAATTATA
Found at i:121686702 original size:2 final size:2
Alignment explanation
Indices: 121686695--121686723 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
121686685 TCAAGAGCCA
121686695 AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121686724 CTGAGGGGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:121688958 original size:15 final size:14
Alignment explanation
Indices: 121688933--121688965 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
121688923 TTTTTAAAAA
121688933 ATATTAATATATTT
1 ATATTAATATATTT
121688947 ATATTAAATATATTT
1 ATATT-AATATATTT
121688962 ATAT
1 ATAT
121688966 ACAAATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
ATATTAATATATTT
Found at i:121701277 original size:30 final size:30
Alignment explanation
Indices: 121701243--121701302 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
121701233 ATGAAGAGAA
121701243 AGAGATCATTCCCAAACAAATATCAAATAG
1 AGAGATCATTCCCAAACAAATATCAAATAG
121701273 AGAGATCATTCCCAAACAAATATCAAATAG
1 AGAGATCATTCCCAAACAAATATCAAATAG
121701303 CCATGGTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.50, C:0.20, G:0.10, T:0.20
Consensus pattern (30 bp):
AGAGATCATTCCCAAACAAATATCAAATAG
Found at i:121702139 original size:30 final size:27
Alignment explanation
Indices: 121702102--121702172 Score: 79
Period size: 31 Copynumber: 2.4 Consensus size: 27
121702092 GCAATTGGAT
*
121702102 CTAAATTTTAAAATCTAAAAAATAGAGTGA
1 CTAAATTTTAAAAT-AAAAAAATAGA--GA
*
121702132 TTAAATTTCTAAAAATAAAAAAATAGAGA
1 CTAAATTT-T-AAAATAAAAAAATAGAGA
121702161 CTAAATTTTAAA
1 CTAAATTTTAAA
121702173 TTTATTAAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
27 3 0.08
28 1 0.03
29 9 0.25
30 7 0.19
31 11 0.31
32 5 0.14
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (27 bp):
CTAAATTTTAAAATAAAAAAATAGAGA
Found at i:121705144 original size:12 final size:12
Alignment explanation
Indices: 121705129--121705153 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
121705119 GTTCTTGTTG
121705129 TTTTATTATTTC
1 TTTTATTATTTC
121705141 TTTTATTATTTC
1 TTTTATTATTTC
121705153 T
1 T
121705154 AATATCTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTATTATTTC
Found at i:121711794 original size:44 final size:44
Alignment explanation
Indices: 121711728--121712533 Score: 394
Period size: 44 Copynumber: 17.8 Consensus size: 44
121711718 GTTATCATGG
121711728 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA
* * * * * ** *
121711772 TAGATCTTATCTCCTTGAAGTTGAAGTGGAGTAGATCGAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA
* * * * *
121711816 GCAAATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATTAAAGCTA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA
* * ** * *
121711861 TAAATCTTATCTCCCTGAAG--GTAGTGGAGCAGGCTGAAGTTG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA
* * * * * *
121711903 CAAGTCTTATCTCTCTGAAGTTGTAGTGGAGCAGACTGAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA
** * * *
121711947 GTGAATCTTATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCTACAAATTA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-------TTA
* * *
121711999 CAAATCTTATCTCCCTGAAGTTACAGCGGAGCAGATTGAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA
* * *** * *
121712043 TACATCTTATCTTATTGAAGTTGCAGTGGAGCA-AGTTAAAAATAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TT-AAAGTTA
** * * *
121712088 CAAATCTTATCTCCCTGAAGTTATAATAGAGTAGATTAAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA
* *
121712132 CAAAT-TCCATAC-CCCTGAAGTTGCAGTGG-G-ATGAATTGAAGTTATTA
1 CAAATCT-TAT-CTCCCTGAAGTTGCAGTGGAGCA-G-ATTAAAG---TTA
* * * * * *
121712179 TGGCGAATCTTATCTTCCTGAAGTTGCAGTAGAGTAGATTGAAGTCA
1 ---CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA
* * * * * *
121712226 CAAACCTTATATCCCTGAAGCTGCGGTGGAGCAGGTTAAAATTAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT-A
* * * *
121712271 CAAATCTTATCTCCCTAAAATTGCAGTGGAGCA-AGTTAAAAATAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TT-AAAGTTA
* * * **
121712316 CAAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTGAA-CCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA
* * * *
121712359 TAAATCTTATAC-CCCTGAAATTGCAATGG-G-ATGGATTGAAGTCATTATGA
1 CAAATCTTAT-CTCCCTGAAGTTGCAGTGGAGCA--GATT-AA---AGT-T-A
* * * * * * * **
121712409 CGAATCTTATCTCCTTTAAGTTGCATTAGAGCAAATAAAAGCCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA
* ** ** * *
121712453 CAAACCTTATCTTTCTGAAGTTGCAAAGGAGTAGATTGAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA
* * ** *
121712497 TAGATCTTATCTGTCTGAAGTTGCAGTGGAGTAGATT
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
121712534 GAAGATTAAA
Statistics
Matches: 566, Mismatches: 151, Indels: 90
0.70 0.19 0.11
Matches are distributed among these distances:
41 1 0.00
42 34 0.06
43 32 0.06
44 231 0.41
45 158 0.28
46 8 0.01
47 6 0.01
49 4 0.01
50 51 0.09
51 37 0.07
52 4 0.01
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31
Consensus pattern (44 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA
Found at i:121711837 original size:89 final size:89
Alignment explanation
Indices: 121711727--121712346 Score: 344
Period size: 89 Copynumber: 6.9 Consensus size: 89
121711717 AGTTATCATG
*
121711727 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTATAGATCTTATCTCCTTGAAG
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTATAGATCTTATCTCCCTGAAG
* * * *
121711792 TTGAAGTGGAGTAGATCGAAGATA
66 TTGCAGTGGAGCAGAGCGAAAATA
* * * * * *
121711816 GCAAATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATTAAAGCTATAAATCTTATCTCCCTGAAG
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTATAGATCTTATCTCCCTGAAG
* * *
121711881 --GTAGTGGAGCAG-GCTG-AAGTT
66 TTGCAGTGGAGCAGAGC-GAAAATA
* * * * * * *
121711902 GCAAGTCTTATCTCTCTGAAGTTGTAGTGGAGCAGACTGAAGATAGT-GAATCTTATTTCCCTGA
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTA-TAG-ATCTTATCTCCCTGA
* * *
121711966 AGTTGCAGTGGAACAAATTAAAGCTACAAATTA
64 AGTTGCAGTGGAGC-----AGAGCGA-AAA-TA
* * * * ***
121711999 -CAAATCTTATCTCCCTGAAGTTACAGCGGAGCAGATTGAAGTTATACATCTTATCTTATTGAAG
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTATAGATCTTATCTCCCTGAAG
**
121712063 TTGCAGTGGAGCA-AGTTAAAAATA
66 TTGCAGTGGAGCAGAG-CGAAAATA
* ** * * * * * *
121712087 ACAAATCTTATCTCCCTGAAGTTATAATAGAGTAGATTAAAGTTACAAAT-TCCATAC-CCCTGA
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTATAGATCT-TAT-CTCCCTGA
* ** ** *
121712150 AGTTGCAGTGGGATGAATTGAAGTTATTATG
64 AGTTGCAGT-GGA-GCA--G-AGCGAAAATA
* * * * * * * * * *
121712181 GCGAATCTTATCTTCCTGAAGTTGCAGTAGAGTAGATTGAAGTCACAAACCTTATATCCCTGAAG
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTATAGATCTTATCTCCCTGAAG
* * **
121712246 CTGCGGTGGAGCAG-GTTAAAATTA
66 TTGCAGTGGAGCAGAGCGAAAA-TA
* * * * * * * *
121712270 ACAAATCTTATCTCCCTAAAATTGCAGTGGAGCA-AGTTAAAAATAACAAATCTTATCTCCTTGA
1 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TT-AAAGTTATAGATCTTATCTCCCTGA
121712334 AGTTGCAGTGGAG
64 AGTTGCAGTGGAG
121712347 TAGATTGAAC
Statistics
Matches: 410, Mismatches: 91, Indels: 59
0.73 0.16 0.11
Matches are distributed among these distances:
86 42 0.10
87 28 0.07
88 9 0.02
89 156 0.38
90 37 0.09
91 2 0.00
92 2 0.00
93 3 0.01
94 61 0.15
95 30 0.07
96 39 0.10
97 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (89 bp):
GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTATAGATCTTATCTCCCTGAAG
TTGCAGTGGAGCAGAGCGAAAATA
Found at i:121711922 original size:131 final size:132
Alignment explanation
Indices: 121711729--121712128 Score: 371
Period size: 131 Copynumber: 3.0 Consensus size: 132
121711719 TTATCATGGC
*
121711729 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTATAGATCTTATCTCCTTGAAGTT
1 AAATCTTATCTCCCTGAAG-TGCAGTGGAGCAGACTAAAGTTATAGATCTTATCTCCTTGAAGTT
* *
121711794 GAAGTGGAGTAGA-TCGAAGATAGCAAATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATTAAAG
65 GAAGTGGAGCAGACT-GAAGATAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGTAGATTAAAG
121711858 CTAT
129 CTAT
* * *
121711862 AAATCTTATCTCCCTGAAG-GTAGTGGAGCAGGCTGAAGTTGCA-AG-TCTTATCT-CTCTGAAG
1 AAATCTTATCTCCCTGAAGTGCAGTGGAGCAGACTAAAGTT--ATAGATCTTATCTCCT-TGAAG
* ** * * * ** *
121711923 TTGTAGTGGAGCAGACTGAAGATAGTGAATCTTATTTCCCTGAAGTTGCAGTGGAACAAATTAAA
63 TTGAAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGTAGATTAAA
121711988 GCTACAAATT
128 GCT----A-T
* * * * * **
121711998 ACAAATCTTATCTCCCTGAAGTTACAGCGGAGCAGATTGAAGTTATACATCTTATCTTATTGAAG
1 --AAATCTTATCTCCCTGAAG-TGCAGTGGAGCAGACTAAAGTTATAGATCTTATCTCCTTGAAG
* * * * * * *
121712063 TTGCAGTGGAGCA-AGTTAAAAATAACAAATCTTATCTCCCTGAAGTTATAATAGAGTAGATTAA
63 TTGAAGTGGAGCAGA-CTGAAGATAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGTAGATTAA
121712127 AG
127 AG
121712129 TTACAAATTC
Statistics
Matches: 213, Mismatches: 37, Indels: 27
0.77 0.13 0.10
Matches are distributed among these distances:
130 2 0.01
131 85 0.40
132 3 0.01
133 20 0.09
135 1 0.00
136 1 0.00
138 20 0.09
139 2 0.01
140 78 0.37
141 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (132 bp):
AAATCTTATCTCCCTGAAGTGCAGTGGAGCAGACTAAAGTTATAGATCTTATCTCCTTGAAGTTG
AAGTGGAGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGTAGATTAAAGCT
AT
Found at i:121712243 original size:227 final size:225
Alignment explanation
Indices: 121711998--121712527 Score: 598
Period size: 227 Copynumber: 2.3 Consensus size: 225
121711988 GCTACAAATT
* * * *
121711998 ACAAATCTTATCTCCCTGAAGTTACAGCGGAGCAGATTGAAGTTATACATCTTATCTTATTGAAG
1 ACAAACCTTATCTCCCTGAAGTTGCAGAGGAGCAGATTGAAGTTATACATCTTATCTT-CTGAAG
*
121712063 TTGCAGTGGAGCAAGTTAAAAATAACAAATCTTATCTCCCTGAAGTTATAATAGAGTAGATTAAA
65 TTGCAGTGGAGCAAGTTAAAAATAACAAATCTTATCTCCCTGAAGTTACAATAGAGTAGATTAAA
** * * * *
121712128 GTTACAAAT-TCCATACCCCTGAAGTTGCAGTGGGATGAATTGAAGTTATTATGGCGAATCTTAT
130 -CCACAAATCT-CATACCCCTGAAATTGCAATGGGATGAATTGAAGTCATTATGACGAATCTTAT
* * ** *
121712192 CTTCC-TGAAGTTGCAGTAGAGTAGATTGAAGTC
193 C-TCCTTGAAGTTGCAGTAGAGCAAATAAAAGCC
* * * * * * * * *
121712225 ACAAACCTTATATCCCTGAAGCTGCGGTGGAGCAGGTTAAAATTA-ACAAATCTTATCTCCCTAA
1 ACAAACCTTATCTCCCTGAAGTTGCAGAGGAGCAGATTGAAGTTATAC--ATCTTATCT-TCTGA
* * * * * *
121712289 AATTGCAGTGGAGCAAGTTAAAAATAACAAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTG
63 AGTTGCAGTGGAGCAAGTTAAAAATAACAAATCTTATCTCCCTGAAGTTACAATAGAGTAGATTA
* * *
121712354 AACCATAAATCTTATACCCCTGAAATTGCAATGGGATGGATTGAAGTCATTATGACGAATCTTAT
128 AACCACAAATCTCATACCCCTGAAATTGCAATGGGATGAATTGAAGTCATTATGACGAATCTTAT
* *
121712419 CTCCTTTAAGTTGCATTAGAGCAAATAAAAGCC
193 CTCCTTGAAGTTGCAGTAGAGCAAATAAAAGCC
** * * *
121712452 ACAAACCTTATCTTTCTGAAGTTGCAAAGGAGTAGATTGAAGTTATAGATCTTATCTGTCTGAAG
1 ACAAACCTTATCTCCCTGAAGTTGCAGAGGAGCAGATTGAAGTTATACATCTTATCT-TCTGAAG
121712517 TTGCAGTGGAG
65 TTGCAGTGGAG
121712528 TAGATTGAAG
Statistics
Matches: 246, Mismatches: 51, Indels: 13
0.79 0.16 0.04
Matches are distributed among these distances:
226 29 0.12
227 144 0.59
228 73 0.30
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (225 bp):
ACAAACCTTATCTCCCTGAAGTTGCAGAGGAGCAGATTGAAGTTATACATCTTATCTTCTGAAGT
TGCAGTGGAGCAAGTTAAAAATAACAAATCTTATCTCCCTGAAGTTACAATAGAGTAGATTAAAC
CACAAATCTCATACCCCTGAAATTGCAATGGGATGAATTGAAGTCATTATGACGAATCTTATCTC
CTTGAAGTTGCAGTAGAGCAAATAAAAGCC
Found at i:121712300 original size:45 final size:45
Alignment explanation
Indices: 121712251--121712346 Score: 147
Period size: 45 Copynumber: 2.1 Consensus size: 45
121712241 TGAAGCTGCG
* *
121712251 GTGGAGCAGGTTAAAATTAACAAATCTTATCTCCCTAAAATTGCA
1 GTGGAGCAAGTTAAAAATAACAAATCTTATCTCCCTAAAATTGCA
* * *
121712296 GTGGAGCAAGTTAAAAATAACAAATCTTATCTCCTTGAAGTTGCA
1 GTGGAGCAAGTTAAAAATAACAAATCTTATCTCCCTAAAATTGCA
121712341 GTGGAG
1 GTGGAG
121712347 TAGATTGAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (45 bp):
GTGGAGCAAGTTAAAAATAACAAATCTTATCTCCCTAAAATTGCA
Found at i:121714235 original size:12 final size:12
Alignment explanation
Indices: 121714220--121714244 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
121714210 GTTGTTGTTG
121714220 TTTTATTATTTC
1 TTTTATTATTTC
121714232 TTTTATTATTTC
1 TTTTATTATTTC
121714244 T
1 T
121714245 AATATCTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTATTATTTC
Found at i:121716866 original size:3 final size:3
Alignment explanation
Indices: 121716858--121716894 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
121716848 GTGTAAGCAC
*
121716858 CGG CGG CGG CGG CGG CGG CGG CGG CGG AGG CGG CGG C
1 CGG CGG CGG CGG CGG CGG CGG CGG CGG CGG CGG CGG C
121716895 AGCAGCGGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.03, C:0.32, G:0.65, T:0.00
Consensus pattern (3 bp):
CGG
Found at i:121718587 original size:20 final size:18
Alignment explanation
Indices: 121718550--121718588 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
121718540 GTTTATATAG
*
121718550 AAAAATAATAATTCAAAT
1 AAAAATAATAATTAAAAT
121718568 AAAAATAAATTAATTAAAAT
1 AAAAAT-AA-TAATTAAAAT
121718588 A
1 A
121718589 GGGACTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 2 0.11
20 10 0.56
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
AAAAATAATAATTAAAAT
Found at i:121719104 original size:29 final size:30
Alignment explanation
Indices: 121719072--121719142 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 30
121719062 AAATTAAAAT
121719072 TTCATGTATAAAATTGCACA-AAA-TCAAAG
1 TTCATGTATAAAATTGCACATAAACT-AAAG
* *
121719101 TTCATGTATACAATTGCACATTAAACTATAG
1 TTCATGTATAAAATTGCACA-TAAACTAAAG
121719132 TTCATGTATAA
1 TTCATGTATAA
121719143 TTTTGAGATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 19 0.53
31 16 0.44
32 1 0.03
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (30 bp):
TTCATGTATAAAATTGCACATAAACTAAAG
Found at i:121719319 original size:2 final size:2
Alignment explanation
Indices: 121719306--121719342 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
121719296 GTGGAACTTA
*
121719306 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
121719343 GATTTGAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:121719468 original size:2 final size:2
Alignment explanation
Indices: 121719456--121719500 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
121719446 TTACTTTATG
121719456 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
121719497 TA TA
1 TA TA
121719501 CTTGAAGGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:121722109 original size:15 final size:15
Alignment explanation
Indices: 121722091--121722122 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
121722081 AAAATTAAAC
*
121722091 TGAAGTGGAGTGGGG
1 TGAAGTGAAGTGGGG
121722106 TGAAGTGAAGTGGGG
1 TGAAGTGAAGTGGGG
121722121 TG
1 TG
121722123 GGGAAGGGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.00, G:0.56, T:0.22
Consensus pattern (15 bp):
TGAAGTGAAGTGGGG
Found at i:121725946 original size:40 final size:39
Alignment explanation
Indices: 121725902--121726018 Score: 155
Period size: 40 Copynumber: 2.9 Consensus size: 39
121725892 TGAGTTACCA
* *
121725902 TAGTGAATCAGGAACAAATCCTATCCCCTTTATATAT-TTC
1 TAGTGAATCAGGAATAAATCCTATCCACTTTA-AT-TCTTC
* *
121725942 TAGTGAATCAGGAATAAATCCTATTCACTTTAATTCCTTT
1 TAGTGAATCAGGAATAAATCCTATCCACTTTAATT-CTTC
*
121725982 TAGTGAATCAGGAATAAATCCTATTCACTTTAATTCT
1 TAGTGAATCAGGAATAAATCCTATCCACTTTAATTCT
121726019 CGAGAAGGCT
Statistics
Matches: 71, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
38 1 0.01
39 4 0.06
40 66 0.93
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (39 bp):
TAGTGAATCAGGAATAAATCCTATCCACTTTAATTCTTC
Found at i:121726963 original size:27 final size:27
Alignment explanation
Indices: 121726890--121726963 Score: 80
Period size: 30 Copynumber: 2.7 Consensus size: 27
121726880 TTTTTTTCCC
*
121726890 TTTTTCCTTTCTTTCT-TTCTCCCCTA
1 TTTTTTCTTTCTTTCTGTTCTCCCCTA
* *
121726916 TTTTTTCGTTTCTATTCTGTTCTTCCCTTT
1 TTTTTTC-TTTCT-TTCTGTTC-TCCCCTA
121726946 TTTTTTCTTTCTTT-TGTT
1 TTTTTTCTTTCTTTCTGTT
121726964 TAAATTTGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
26 6 0.15
27 9 0.22
28 6 0.15
29 8 0.20
30 12 0.29
ACGTcount: A:0.03, C:0.24, G:0.04, T:0.69
Consensus pattern (27 bp):
TTTTTTCTTTCTTTCTGTTCTCCCCTA
Found at i:121728422 original size:31 final size:31
Alignment explanation
Indices: 121728385--121728500 Score: 169
Period size: 31 Copynumber: 3.7 Consensus size: 31
121728375 AGTGTACAAT
121728385 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * *
121728416 GTGAAAAGTAGTAGCTTCGGCTGCCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
121728447 GTGAAAAGTGGTAGCTCCAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
121728478 GTGAATAGTGATAGCTTCGGCTA
1 GTGAAAAGTGGTAGCTTCGGCTA
121728501 TCGAATGTGA
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 73 1.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:121728543 original size:29 final size:29
Alignment explanation
Indices: 121728478--121728544 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
121728468 TACCTGATCA
* * ** *
121728478 GTGAATAGTGATAGCTTCGGCTATCGAAT
1 GTGAAAAGGGATAGCTTCAACTATCAAAT
121728507 GTGAAAAGGGATAGCTTCAACTATCAAAT
1 GTGAAAAGGGATAGCTTCAACTATCAAAT
* *
121728536 TTGGAAAGG
1 GTGAAAAGG
121728545 AAAGGTATAC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.27
Consensus pattern (29 bp):
GTGAAAAGGGATAGCTTCAACTATCAAAT
Found at i:121728571 original size:33 final size:33
Alignment explanation
Indices: 121728534--121728708 Score: 206
Period size: 33 Copynumber: 5.3 Consensus size: 33
121728524 CAACTATCAA
* *
121728534 ATTTGGAAAGGAAAGGTATACTTTGTGTATACT
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
**** *
121728567 ATTTGAAAATCTTAGGTATTCTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
**
121728600 ATTTGAAAAGGTTAGGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* * *
121728633 ATATGAAAAGGGAAGGTATACTTTGTGTATATC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* *
121728666 ATATGAAAAGGAAAGGTATACTTTGTGTGTACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* *
121728699 ACTTGGAAAG
1 ATTTGAAAAG
121728709 AAACGTACAC
Statistics
Matches: 122, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 122 1.00
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.36
Consensus pattern (33 bp):
ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
Found at i:121732081 original size:4 final size:4
Alignment explanation
Indices: 121732072--121732114 Score: 52
Period size: 4 Copynumber: 11.0 Consensus size: 4
121732062 TTTTCTTTTA
* * *
121732072 TATT TATT TACT TATT TATT TATT TCTT TA-T TATT TCTT TATT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
121732115 CTTTCTCATA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
3 3 0.09
4 29 0.91
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (4 bp):
TATT
Found at i:121732107 original size:11 final size:11
Alignment explanation
Indices: 121732086--121732120 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
121732076 TATTTACTTA
121732086 TTTATTTATTTC
1 TTTA-TTATTTC
121732098 TTTATTATTTC
1 TTTATTATTTC
*
121732109 TTTATTCTTTC
1 TTTATTATTTC
121732120 T
1 T
121732121 CATATATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 18 0.82
12 4 0.18
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTATTATTTC
Found at i:121732281 original size:56 final size:56
Alignment explanation
Indices: 121732208--121732345 Score: 179
Period size: 56 Copynumber: 2.4 Consensus size: 56
121732198 TATTTCTCAT
**
121732208 ATACTTAAATTTAATATTACTTATTTTATTTATTTATTTA-TTCTTTTACTTTTTAA
1 ATACTTAAATTTAATATTACTTATTTTACCTATTTATTTATTTCTTTTA-TTTTTAA
* *
121732264 ATACTTAAATTTAATATTATTTGTTTTACCTATTTATTTATTGTTCTTTTATTTTTAA
1 ATACTTAAATTTAATATTACTTATTTTACCTATTTATTTA-T-TTCTTTTATTTTTAA
* * *
121732322 ATATTTAAATTTGATATTGCTTAT
1 ATACTTAAATTTAATATTACTTAT
121732346 ACTTCCCTTT
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
56 36 0.51
58 26 0.37
59 8 0.11
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.61
Consensus pattern (56 bp):
ATACTTAAATTTAATATTACTTATTTTACCTATTTATTTATTTCTTTTATTTTTAA
Found at i:121733537 original size:23 final size:23
Alignment explanation
Indices: 121733507--121733553 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
121733497 CACGAATGTT
121733507 AAAAAAGGTCTCAAACTTAGGAG
1 AAAAAAGGTCTCAAACTTAGGAG
121733530 AAAAAAGGTCTCAAACTTAGGAG
1 AAAAAAGGTCTCAAACTTAGGAG
121733553 A
1 A
121733554 GTGATTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.49, C:0.13, G:0.21, T:0.17
Consensus pattern (23 bp):
AAAAAAGGTCTCAAACTTAGGAG
Found at i:121736402 original size:13 final size:13
Alignment explanation
Indices: 121736384--121736410 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
121736374 TTTTAAATAA
121736384 AATTAAATCAATT
1 AATTAAATCAATT
121736397 AATTAAATCAATT
1 AATTAAATCAATT
121736410 A
1 A
121736411 CTGTAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
AATTAAATCAATT
Found at i:121741491 original size:22 final size:22
Alignment explanation
Indices: 121741461--121741512 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
121741451 CATCAGTGTT
* * *
121741461 ATCAATGGCATTTTATCTGCAA
1 ATCAGTGGCAATTTATCTACAA
121741483 ATCAGTGGCAATTTATCTACAA
1 ATCAGTGGCAATTTATCTACAA
121741505 ATCAGTGG
1 ATCAGTGG
121741513 TGGCATGTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (22 bp):
ATCAGTGGCAATTTATCTACAA
Found at i:121742659 original size:24 final size:24
Alignment explanation
Indices: 121742625--121742672 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
121742615 GAAGTTAAGA
*
121742625 CTCGAGGGATGAGAGCTCGTGGAG
1 CTCGAGAGATGAGAGCTCGTGGAG
121742649 CTCGAGAGATGAGAGCTCGTGGAG
1 CTCGAGAGATGAGAGCTCGTGGAG
121742673 AGCCAGGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.44, T:0.17
Consensus pattern (24 bp):
CTCGAGAGATGAGAGCTCGTGGAG
Found at i:121747945 original size:50 final size:50
Alignment explanation
Indices: 121747874--121748050 Score: 257
Period size: 50 Copynumber: 3.5 Consensus size: 50
121747864 CCATGAAAAC
121747874 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
121747924 AAGTGATAAGTAATAACTTCGGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
121747974 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGG-CAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATGA
* * * *
121748024 CAACTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
121748051 CTGATCAGTG
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
50 89 0.79
51 24 0.21
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:121748066 original size:31 final size:31
Alignment explanation
Indices: 121748028--121748225 Score: 297
Period size: 31 Copynumber: 6.4 Consensus size: 31
121748018 AAATGACAAC
121748028 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
121748059 TGAAAAGTGGTAGTTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
121748090 TGAAAAGTGGTAGCTTCTGCTACCTAATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
121748121 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
121748152 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* ** *
121748183 TGAAAAATGGTAGCACCAACTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
121748214 TGAATAGTGGTA
1 TGAAAAGTGGTA
121748226 CCTTTGGCTA
Statistics
Matches: 154, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 154 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
Found at i:121748247 original size:7 final size:7
Alignment explanation
Indices: 121748235--121748263 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
121748225 ACCTTTGGCT
121748235 ACAAGTG
1 ACAAGTG
121748242 ACAAGTG
1 ACAAGTG
121748249 ACAAGTG
1 ACAAGTG
121748256 ACAAGTG
1 ACAAGTG
121748263 A
1 A
121748264 TTTCTGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:121756459 original size:13 final size:13
Alignment explanation
Indices: 121756441--121756517 Score: 100
Period size: 13 Copynumber: 5.9 Consensus size: 13
121756431 AGTTCTTCAT
121756441 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
121756454 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
121756467 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
121756480 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* *
121756493 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
*
121756506 TGCTTTGGAAAA
1 TGCTTTTGAAAA
121756518 ATTTAAATGT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 55 1.00
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:121756499 original size:39 final size:39
Alignment explanation
Indices: 121756441--121756517 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 39
121756431 AGTTCTTCAT
*
121756441 TGCTTTTGAAAAGTGCTTTTGAAAAGTGCTGTGGAAAAG
1 TGCTTTTGAAAAGTACTTTTGAAAAGTGCTGTGGAAAAG
* * *
121756480 TGCTTTTGAGAAGTACTTTTGAGAAGTGCTTTGGAAAA
1 TGCTTTTGAAAAGTACTTTTGAAAAGTGCTGTGGAAAA
121756518 ATTTAAATGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (39 bp):
TGCTTTTGAAAAGTACTTTTGAAAAGTGCTGTGGAAAAG
Found at i:121763209 original size:27 final size:26
Alignment explanation
Indices: 121763179--121763247 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 26
121763169 GTTTAAAGTT
*
121763179 TTTTTAACCTTATTTTTCTATTTTAAA
1 TTTTTAA-CTTATTTTCCTATTTTAAA
** *
121763206 TTTTTTTTCTTA-TTTCCTATTTTATA
1 -TTTTTAACTTATTTTCCTATTTTAAA
121763232 TTTTTAACTCTATTTT
1 TTTTTAACT-TATTTT
121763248 ACGTTATTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
25 7 0.21
26 14 0.42
27 7 0.21
28 5 0.15
ACGTcount: A:0.20, C:0.12, G:0.00, T:0.68
Consensus pattern (26 bp):
TTTTTAACTTATTTTCCTATTTTAAA
Found at i:121764219 original size:21 final size:22
Alignment explanation
Indices: 121764175--121764223 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
121764165 CTCAACCAAA
* * *
121764175 ATTTTATTTTATTATTTTATAC
1 ATTTTAATTTATTATTATACAC
121764197 ATTTTAATTT-TTATTATACAC
1 ATTTTAATTTATTATTATACAC
121764218 ATTTTA
1 ATTTTA
121764224 TTATCTCTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (22 bp):
ATTTTAATTTATTATTATACAC
Found at i:121777886 original size:6 final size:6
Alignment explanation
Indices: 121777840--121777897 Score: 55
Period size: 6 Copynumber: 9.5 Consensus size: 6
121777830 AAGAAGTCTA
* * * *
121777840 AAAACAT AACAAT AAACAT -AAAAC AAAAAT AAAACT AAAAAAT AAAAAT
1 AAAA-AT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT -AAAAAT AAAAAT
121777889 AAAAAT AAA
1 AAAAAT AAA
121777898 TGATAAATGG
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
5 3 0.07
6 30 0.73
7 8 0.20
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:121777904 original size:19 final size:19
Alignment explanation
Indices: 121777838--121777897 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
121777828 AAAAGAAGTC
* *
121777838 TAAAAACATAACAATAAACA
1 TAAAAA-ATAAAAATAAAAA
* *
121777858 T--AAAACAAAAATAAAAC
1 TAAAAAATAAAAATAAAAA
121777875 TAAAAAATAAAAATAAAAA
1 TAAAAAATAAAAATAAAAA
121777894 TAAA
1 TAAA
121777898 TGATAAATGG
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
17 10 0.31
18 3 0.09
19 18 0.56
20 1 0.03
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (19 bp):
TAAAAAATAAAAATAAAAA
Found at i:121782516 original size:93 final size:93
Alignment explanation
Indices: 121782404--121782574 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
121782394 GCCCATAAGT
* *
121782404 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
121782469 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
121782497 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
121782562 CGAGTTCGGATGC
66 CGAGCTCGGATGC
121782575 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:121782571 original size:46 final size:46
Alignment explanation
Indices: 121782396--121782571 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
121782386 TGTAACCCGC
* *
121782396 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
121782442 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
121782488 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
121782535 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
121782572 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:121784986 original size:15 final size:15
Alignment explanation
Indices: 121784962--121785009 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
121784952 AGGAAACCGA
121784962 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
121784977 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
121784991 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
121785007 ATA
1 ATA
121785010 CGATACTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:121794845 original size:6 final size:6
Alignment explanation
Indices: 121794834--121794867 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
121794824 TTTTGCCTTA
121794834 GTTCTG GTTCTG GTTCTG GTTCTG GTTCTG GTTC
1 GTTCTG GTTCTG GTTCTG GTTCTG GTTCTG GTTC
121794868 AACTAACCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.18, G:0.32, T:0.50
Consensus pattern (6 bp):
GTTCTG
Found at i:121801258 original size:47 final size:47
Alignment explanation
Indices: 121801201--121801419 Score: 160
Period size: 47 Copynumber: 4.7 Consensus size: 47
121801191 AAACTTAGCT
121801201 GATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCC
1 GATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCC
* * *
121801248 GATGCATGTCCCAGACATGTCTTACACTGGC-ACTCAT-ATCTATGCC
1 GATGCATGTCCCAGACACGTCTTACACTGGCTA-TCATCATCGAGGCC
* * ** * * * * *
121801294 AATGCCATGTCCTAGACGTGGTCTTACACTAGCTATAATAAT-GTGGCT
1 GATG-CATGTCCCAGAC-ACGTCTTACACTGGCTATCATCATCGAGGCC
* * * ** * * *
121801342 GATGCATGT-CCAGAAACATCTTACACTAGCCCTCGTC-TCAATGCC
1 GATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCC
* *
121801387 GATGCCATGTCCCAGACATGGTCTTATACTGGC
1 GATG-CATGTCCCAGACA-CGTCTTACACTGGC
121801420 CCTCATATAA
Statistics
Matches: 130, Mismatches: 33, Indels: 17
0.72 0.18 0.09
Matches are distributed among these distances:
44 1 0.01
45 20 0.15
46 20 0.15
47 56 0.43
48 30 0.23
49 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCC
Found at i:121801386 original size:93 final size:95
Alignment explanation
Indices: 121801205--121801412 Score: 242
Period size: 93 Copynumber: 2.2 Consensus size: 95
121801195 TTAGCTGATG
* * * * * **
121801205 CATGTCCCAGACA-CGTCTTACACTGGCTATCATCATCGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGGTCTTACACTAGCTATAATAATCGAGGCCGATGCATGTCCCAGAAACATC
* *
121801269 TTACACTGGCACTCATATCTATGCCAATGC
66 TTACACTAGCACTCATATCAATGCCAATGC
* * * *
121801299 CATGTCCTAGACGTGGTCTTACACTAGCTATAATAAT-GTGGCTGATGCATGT-CCAGAAACATC
1 CATGTCCCAGACATGGTCTTACACTAGCTATAATAATCGAGGCCGATGCATGTCCCAGAAACATC
* * * *
121801362 TTACACTAGCCCTCGTCTCAATGCCGATGC
66 TTACACTAGCACTCATATCAATGCCAATGC
121801392 CATGTCCCAGACATGGTCTTA
1 CATGTCCCAGACATGGTCTTA
121801413 TACTGGCCCT
Statistics
Matches: 94, Mismatches: 19, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
93 51 0.54
94 24 0.26
95 19 0.20
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (95 bp):
CATGTCCCAGACATGGTCTTACACTAGCTATAATAATCGAGGCCGATGCATGTCCCAGAAACATC
TTACACTAGCACTCATATCAATGCCAATGC
Found at i:121807205 original size:27 final size:27
Alignment explanation
Indices: 121807164--121807217 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
121807154 TGTCATGTGA
* *
121807164 AATTGAATGACAAATTATTGTTACATG
1 AATTGAATGACAAATTACTATTACATG
**
121807191 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGACAAATTACTATTACATG
121807218 GGTTGTATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (27 bp):
AATTGAATGACAAATTACTATTACATG
Found at i:121807707 original size:150 final size:150
Alignment explanation
Indices: 121807436--121807775 Score: 599
Period size: 150 Copynumber: 2.3 Consensus size: 150
121807426 CGAATGATCT
* *
121807436 ATTGTGAGGTCACGTGTGTAGTACTAAGTGCAGGTTACTACGTGTACCGGATAATTGGTCGCATA
1 ATTGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATA
* *
121807501 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGATCACGTGTGTAGTACTAAATG
66 TGTAGTACTAAGTGCAGGCTACTATGAGTACCCGATAACTTCGATCACGTGTGTAGTACTAAATG
121807566 CAGGCTACTACGTGTATCAG
131 CAGGCTACTACGTGTATCAG
* * *
121807586 ATTGTTAGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCATG
1 ATTGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATA
*
121807651 TGTAGTACTAAGTGCAGGCTACTATGAGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTG
66 TGTAGTACTAAGTGCAGGCTACTATGAGTACCCGATAACTTCGATCACGTGTGTAGTACTAAATG
121807716 CAGGCTACTACGTGTATCAG
131 CAGGCTACTACGTGTATCAG
*
121807736 ATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
1 ATTGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
121807776 TGCGTACCAG
Statistics
Matches: 180, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
150 180 1.00
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (150 bp):
ATTGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATA
TGTAGTACTAAGTGCAGGCTACTATGAGTACCCGATAACTTCGATCACGTGTGTAGTACTAAATG
CAGGCTACTACGTGTATCAG
Found at i:121807787 original size:50 final size:50
Alignment explanation
Indices: 121807442--121807788 Score: 401
Period size: 50 Copynumber: 6.9 Consensus size: 50
121807432 ATCTATTGTG
* *
121807442 AGGTCACGTGTGTAGTACTAAGTGCAGGTTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
121807492 -GGTCGCATATGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
121807542 TGATCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTATCAGATTGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
121807592 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
121807642 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGAGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * **
121807692 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
121807742 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
121807789 GCCTTGTCTA
Statistics
Matches: 246, Mismatches: 47, Indels: 8
0.82 0.16 0.03
Matches are distributed among these distances:
49 80 0.33
50 92 0.37
51 74 0.30
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:121807829 original size:150 final size:149
Alignment explanation
Indices: 121807442--121807830 Score: 480
Period size: 150 Copynumber: 2.6 Consensus size: 149
121807432 ATCTATTGTG
* * * *
121807442 AGGTCACGTGTGTAGTACTAAGTGCAGGTTACTACGTGTACCGGATAATTGGTCGCATA-TGTAG
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCACA-AGTGTAG
* * * * *
121807506 TACTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGATCACGTGTGTAGTACTAAATGCAGGC
65 AAATAAGTGCAGGCAAC-ATGAGTACCCGATAACTTCGATCACGTGTGTAGTACTAAATGCAGGC
*
121807571 TACTACGTGTATCAGATTGTT
129 TACTACGTGTATCAGATGGTT
* * * * * * *
121807592 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCACAAGTGTAGA
* * *
121807657 ACTAAGTGCAGGCTACTATGAGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
66 AATAAGTGCAGGCAAC-ATGAGTACCCGATAACTTCGATCACGTGTGTAGTACTAAATGCAGGCT
121807722 ACTACGTGTATCAGATGGTT
130 ACTACGTGTATCAGATGGTT
* *
121807742 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCCTT-GTCTACAAGTGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA--ATTGGTC-ACAAGTGT
*
121807806 -GAAAATATGTGCAGGCAAC-TGAGTA
63 AG-AAATAAGTGCAGGCAACATGAGTA
121807831 TCAGTTAATA
Statistics
Matches: 214, Mismatches: 20, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
150 189 0.88
151 4 0.02
152 21 0.10
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (149 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCACAAGTGTAGA
AATAAGTGCAGGCAACATGAGTACCCGATAACTTCGATCACGTGTGTAGTACTAAATGCAGGCTA
CTACGTGTATCAGATGGTT
Found at i:121808348 original size:5 final size:5
Alignment explanation
Indices: 121808338--121808378 Score: 55
Period size: 5 Copynumber: 7.6 Consensus size: 5
121808328 AAGAAATTGT
121808338 TATTA TATTA TATTA TTATTA TATTATA TATTA TATTA TAT
1 TATTA TATTA TATTA -TATTA TA-T-TA TATTA TATTA TAT
121808379 AAATAAGTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 22 0.67
6 7 0.21
7 4 0.12
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:121808356 original size:16 final size:15
Alignment explanation
Indices: 121808337--121808371 Score: 61
Period size: 16 Copynumber: 2.3 Consensus size: 15
121808327 TAAGAAATTG
121808337 TTATTATATTATATTA
1 TTATTATATTATA-TA
121808353 TTATTATATTATATA
1 TTATTATATTATATA
121808368 TTAT
1 TTAT
121808372 ATTATATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TTATTATATTATATA
Found at i:121809860 original size:2 final size:2
Alignment explanation
Indices: 121809853--121809878 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
121809843 AATAATTGAG
121809853 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
121809879 TAAATTGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121810187 original size:6 final size:6
Alignment explanation
Indices: 121810176--121810200 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
121810166 GTGTGTTGAA
121810176 TACTGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT T
121810201 CCGGATTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (6 bp):
TACTGT
Found at i:121810200 original size:51 final size:45
Alignment explanation
Indices: 121810077--121810196 Score: 195
Period size: 45 Copynumber: 2.7 Consensus size: 45
121810067 CAGGCACTTA
* * *
121810077 TGTGCCGACTACTGTTACTGTTACTGTTACCGATTCGGCACTTTG
1 TGTGTCGAATACTGTTACTGTTACTGTTACCGATTCAGCACTTTG
*
121810122 TGTGTCGAATACTGTTACTGTTACTGTTATCGATTCAGCACTTTG
1 TGTGTCGAATACTGTTACTGTTACTGTTACCGATTCAGCACTTTG
*
121810167 TGTGTTGAATACTGTTACTGTTACTGTTAC
1 TGTGTCGAATACTGTTACTGTTACTGTTAC
121810197 TGTTCCGGAT
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 69 1.00
ACGTcount: A:0.18, C:0.19, G:0.21, T:0.42
Consensus pattern (45 bp):
TGTGTCGAATACTGTTACTGTTACTGTTACCGATTCAGCACTTTG
Found at i:121810501 original size:72 final size:72
Alignment explanation
Indices: 121810363--121810514 Score: 166
Period size: 72 Copynumber: 2.1 Consensus size: 72
121810353 TAAAGGTATA
* * * * * *
121810363 AAATAACTGATTATTTCTGAATAATTGACTGTTACCGAATAATTGACTGTTACTGGATAATAGAC
1 AAATAACTGATTATTACTGAATAAATGACTATTACCGAATAACTGACTGTCACTGAATAATAGAC
*
121810428 TGTTATT
66 TGTTACT
* *
121810435 AAATAACTGGA-TATTACTGAATAAATGA-TCATTACTGAATAACTGATTGTCACTGAATAA-AT
1 AAATAACT-GATTATTACTGAATAAATGACT-ATTACCGAATAACTGACTGTCACTGAATAATA-
121810497 GACTGTTACT
63 GACTGTTACT
*
121810507 GAATAACT
1 AAATAACT
121810515 TAATTGCTAC
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
71 2 0.03
72 63 0.94
73 2 0.03
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (72 bp):
AAATAACTGATTATTACTGAATAAATGACTATTACCGAATAACTGACTGTCACTGAATAATAGAC
TGTTACT
Found at i:121810561 original size:18 final size:18
Alignment explanation
Indices: 121810379--121810560 Score: 138
Period size: 18 Copynumber: 10.1 Consensus size: 18
121810369 CTGATTATTT
121810379 CTGAATAATTGACTGTTA
1 CTGAATAATTGACTGTTA
*
121810397 CCGAATAATTGACTGTTA
1 CTGAATAATTGACTGTTA
* *
121810415 CTGGATAATAGACTGTTA
1 CTGAATAATTGACTGTTA
* * * *
121810433 TTAAATAACTGGA-TATTA
1 CTGAATAA-TTGACTGTTA
* *
121810451 CTGAATAAATGA-TCATTA
1 CTGAATAATTGACT-GTTA
* * *
121810469 CTGAATAACTGATTGTCA
1 CTGAATAATTGACTGTTA
*
121810487 CTGAATAAATGACTGTTA
1 CTGAATAATTGACTGTTA
* * *
121810505 CTGAATAACTTAATTGCTA
1 CTGAATAA-TTGACTGTTA
*
121810524 CTGAAT-ATCTGA-TTTTA
1 CTGAATAAT-TGACTGTTA
*
121810541 CTAAATAATTGACTGTTA
1 CTGAATAATTGACTGTTA
121810559 CT
1 CT
121810561 AGATAACCGA
Statistics
Matches: 129, Mismatches: 28, Indels: 14
0.75 0.16 0.08
Matches are distributed among these distances:
17 15 0.12
18 98 0.76
19 16 0.12
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37
Consensus pattern (18 bp):
CTGAATAATTGACTGTTA
Found at i:121810646 original size:36 final size:36
Alignment explanation
Indices: 121810587--121810655 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
121810577 GATCTATACT
* * * * *
121810587 AAATAACTGATTATTATTGAATAATTGATTGTTACC
1 AAATAACTGACTATTACTAAATAAATAATTGTTACC
121810623 AAATAACTGACTATTACTAAATAAATAATTGTT
1 AAATAACTGACTATTACTAAATAAATAATTGTT
121810656 CTGATTGTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (36 bp):
AAATAACTGACTATTACTAAATAAATAATTGTTACC
Found at i:121815552 original size:35 final size:35
Alignment explanation
Indices: 121815506--121815574 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
121815496 ACTCTCTGTT
*
121815506 TTGGTGTGTTTC-AGTTGGACTACCTCTTATGAGTA
1 TTGGTGTGTTTCGA-ATGGACTACCTCTTATGAGTA
*
121815541 TTGGTGTGTTTCGAATGGACTAGCTCTTATGAGT
1 TTGGTGTGTTTCGAATGGACTACCTCTTATGAGT
121815575 GTGTTTTAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 30 0.97
36 1 0.03
ACGTcount: A:0.17, C:0.13, G:0.28, T:0.42
Consensus pattern (35 bp):
TTGGTGTGTTTCGAATGGACTACCTCTTATGAGTA
Found at i:121815587 original size:29 final size:29
Alignment explanation
Indices: 121815509--121815602 Score: 89
Period size: 29 Copynumber: 3.0 Consensus size: 29
121815499 CTCTGTTTTG
* * *
121815509 GTGTGTTTCAGTTGGACTACCTCTTATGA
1 GTGTGTTTTAGATGGACTAGCTCTTATGA
*
121815538 GTATTGGTGTGTTTCGAATGGACTAGCTCTTATGA
1 G---T-GTGT-TTTAG-ATGGACTAGCTCTTATGA
*
121815573 GTGTGTTTTAGATGGATTAGCTCTTATGA
1 GTGTGTTTTAGATGGACTAGCTCTTATGA
121815602 G
1 G
121815603 CATCTGGTGT
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
29 19 0.36
30 4 0.08
31 4 0.08
32 2 0.04
33 4 0.08
34 3 0.06
35 17 0.32
ACGTcount: A:0.19, C:0.12, G:0.28, T:0.41
Consensus pattern (29 bp):
GTGTGTTTTAGATGGACTAGCTCTTATGA
Found at i:121817812 original size:29 final size:29
Alignment explanation
Indices: 121817768--121817825 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
121817758 CCCACTGTGA
*
121817768 GTATGTTTCTTGGATTATTATGTAATAGT
1 GTATGTTTCTTAGATTATTATGTAATAGT
121817797 GTATGTTTCTTAGATTATTATGTAATAGT
1 GTATGTTTCTTAGATTATTATGTAATAGT
121817826 CACAAGATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.26, C:0.03, G:0.19, T:0.52
Consensus pattern (29 bp):
GTATGTTTCTTAGATTATTATGTAATAGT
Found at i:121818998 original size:2 final size:2
Alignment explanation
Indices: 121818991--121819019 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
121818981 TCAACCCAAC
121818991 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
121819020 AGCAAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:121820122 original size:5 final size:5
Alignment explanation
Indices: 121820112--121820136 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
121820102 CCCTTAATTC
121820112 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
121820137 CTACCGCCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:121822587 original size:22 final size:22
Alignment explanation
Indices: 121822545--121822588 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
121822535 AATTATTTAC
* *
121822545 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
121822567 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
121822589 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:121822889 original size:40 final size:40
Alignment explanation
Indices: 121822815--121823036 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
121822805 AGCCCAAGTA
* *
121822815 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
121822854 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
121822894 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
121822934 CCTTCAGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
121822974 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
121823014 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
121823037 CATTCGAATA
Statistics
Matches: 169, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 12 0.07
40 154 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:121828168 original size:2 final size:2
Alignment explanation
Indices: 121828161--121828204 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
121828151 GAACAATTTG
121828161 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121828203 AT
1 AT
121828205 GAGTCTTGTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121830479 original size:33 final size:33
Alignment explanation
Indices: 121830442--121830505 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
121830432 TGATGATGCC
121830442 ATTCATCT-TCAATTATTCCCTTTTTCATTGAAG
1 ATTCATCTCT-AATTATTCCCTTTTTCATTGAAG
**
121830475 ATTCATCTCTGGTTATTCCCTTTTTCATTGA
1 ATTCATCTCTAATTATTCCCTTTTTCATTGA
121830506 GGAACAAAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.20, C:0.22, G:0.08, T:0.50
Consensus pattern (33 bp):
ATTCATCTCTAATTATTCCCTTTTTCATTGAAG
Found at i:121833597 original size:35 final size:36
Alignment explanation
Indices: 121833469--121833600 Score: 151
Period size: 35 Copynumber: 3.6 Consensus size: 36
121833459 TCCTCATTGA
** *
121833469 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
* **
121833504 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTATGG----GAT
*
121833544 AATACCATACCTACATTTCACAGCTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
121833579 AATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
121833601 CTTTTCCATG
Statistics
Matches: 84, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
35 54 0.64
39 3 0.04
40 27 0.32
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (36 bp):
AATACCATACCTACATTTCACAACTCAGTATGGGAT
Found at i:121841038 original size:35 final size:36
Alignment explanation
Indices: 121840910--121841041 Score: 151
Period size: 35 Copynumber: 3.6 Consensus size: 36
121840900 TCCTCATTGA
** *
121840910 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
* **
121840945 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTATGG----GAT
*
121840985 AATACCATACCTACATTTCACAGCTCAGTAT-GGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGGAT
121841020 AATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
121841042 CTTTGCCATG
Statistics
Matches: 84, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
35 54 0.64
39 3 0.04
40 27 0.32
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (36 bp):
AATACCATACCTACATTTCACAACTCAGTATGGGAT
Found at i:121850074 original size:12 final size:12
Alignment explanation
Indices: 121850057--121850110 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 12
121850047 TTTAAAAACA
121850057 TAAAACAAATAT
1 TAAAACAAATAT
121850069 TAAAACAAATA-
1 TAAAACAAATAT
*
121850080 -AAAA-ATAATAC
1 TAAAACA-AATAT
* *
121850091 TAAAACAATTCT
1 TAAAACAAATAT
121850103 TAAAACAA
1 TAAAACAA
121850111 TACACAAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
9 1 0.03
10 8 0.23
12 25 0.71
13 1 0.03
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (12 bp):
TAAAACAAATAT
Found at i:121850089 original size:22 final size:22
Alignment explanation
Indices: 121850040--121850098 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
121850030 ATAATAAATC
*
121850040 AAAT-ATATTTAAAA-ACATAAA
1 AAATAATA-TTAAAACAAATAAA
*
121850061 ACA-AATATTAAAACAAATAAA
1 AAATAATATTAAAACAAATAAA
*
121850082 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
121850099 TTCTTAAAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
20 6 0.19
21 13 0.42
22 12 0.39
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (22 bp):
AAATAATATTAAAACAAATAAA
Found at i:121854898 original size:83 final size:83
Alignment explanation
Indices: 121854734--121854891 Score: 217
Period size: 83 Copynumber: 1.9 Consensus size: 83
121854724 CATACCAGAA
* * * * ** *
121854734 ACGAGTAAGACCATAGCTGAAAGACTTTATGGTATCACGATTTTAATGAGTAAGACCATATTTGA
1 ACGAGTAAGACCATAACTGAAAGACATTATGGCATCACGATTCTAACAAGTAAGACCATAGTTGA
*
121854799 AATATGTTATAACATCAC
66 AAGATGTTATAACATCAC
** *
121854817 ACGAGTAAGATGATAACTGAAATACATTATGGCATCACGATTCTAACAAGTAAGACCATAGTTGA
1 ACGAGTAAGACCATAACTGAAAGACATTATGGCATCACGATTCTAACAAGTAAGACCATAGTTGA
121854882 AAGATGTTAT
66 AAGATGTTAT
121854892 GGCATCATGA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
83 64 1.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (83 bp):
ACGAGTAAGACCATAACTGAAAGACATTATGGCATCACGATTCTAACAAGTAAGACCATAGTTGA
AAGATGTTATAACATCAC
Found at i:121854938 original size:45 final size:45
Alignment explanation
Indices: 121854834--121854942 Score: 130
Period size: 45 Copynumber: 2.4 Consensus size: 45
121854824 AGATGATAAC
* * * *
121854834 TGAAATACATTATGGCATCACGATTCTAACAAGTAAGACCATAGT
1 TGAAAGACATTATGGCATCACGAATCAAACAAATAAGACCATAGT
** *
121854879 TGAAAGATGTTATGGCATCATGAATCAAACAAATAAGACCAT-GAT
1 TGAAAGACATTATGGCATCACGAATCAAACAAATAAGACCATAG-T
*
121854924 TGAAAGACACTATGGCATC
1 TGAAAGACATTATGGCATC
121854943 CTTCAAACAT
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 1 0.02
45 52 0.98
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.25
Consensus pattern (45 bp):
TGAAAGACATTATGGCATCACGAATCAAACAAATAAGACCATAGT
Found at i:121869346 original size:49 final size:50
Alignment explanation
Indices: 121869279--121869406 Score: 147
Period size: 50 Copynumber: 2.6 Consensus size: 50
121869269 CAAGTCGATT
* *
121869279 CCATGTCCCAAACATGGTCTTACACTGACTATCGA-A-AT-TGACGCTGACG
1 CCATGTCCCAGACATGGTCTTACACTGACTATC-ACATATCCG-CGCTGACG
* * * *
121869328 CCATGTCCTAGACATGGTCTTACACT-AGCTCTCACATATCCGTGCTGATG
1 CCATGTCCCAGACATGGTCTTACACTGA-CTATCACATATCCGCGCTGACG
121869378 CCATGTCCCAGACATGGTCTTACACTGAC
1 CCATGTCCCAGACATGGTCTTACACTGAC
121869407 ACATTTTGTA
Statistics
Matches: 67, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
48 2 0.03
49 29 0.43
50 34 0.51
51 2 0.03
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACACTGACTATCACATATCCGCGCTGACG
Found at i:121869404 original size:99 final size:96
Alignment explanation
Indices: 121869231--121869406 Score: 248
Period size: 96 Copynumber: 1.8 Consensus size: 96
121869221 TAACGCCGAT
* *
121869231 GCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCGATTCCATGTCCCAAACATGG
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCATGTCCCAAACATGG
121869296 TCTTACACTGACTATCGAAATTGACGCTGAC
66 TCTTACACTGACTATCGAAATTGACGCTGAC
* * *
121869327 GCCATGTCCTAGACATGGTCTTACACTAGCTC-TCACAT-ATCCGTGCTGATGCCATGTCCCAGA
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCATC-CATCA--AGT-C-GATGCCATGTCCCAAA
121869390 CATGGTCTTACACTGAC
61 CATGGTCTTACACTGAC
121869407 ACATTTTGTA
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
95 3 0.04
96 33 0.47
97 2 0.03
98 1 0.01
99 31 0.44
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (96 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCATGTCCCAAACATGG
TCTTACACTGACTATCGAAATTGACGCTGAC
Found at i:121869539 original size:48 final size:46
Alignment explanation
Indices: 121869329--121869585 Score: 154
Period size: 44 Copynumber: 5.5 Consensus size: 46
121869319 ACGCTGACGC
* * * *
121869329 CATGTCCTAGACATGGTCTTACACTAGCTCTCACATATC-CGTGCTGATG
1 CATGTCCCAGACAT-GTCTTACACT-GCTCT-ACATCTCAAG-GCCGATG
* * ** *
121869378 CCATGTCCCAGACATGGTCTTACACTG-AC-ACATTTTGTA-GTCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGCTCTACA-TCTCAAGGCCGATG
*
121869424 CATGTCCCAGACATGTCTTACA-TGCT-TACATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGCTCTACATCTCAAGGCCGATG
* * * * *
121869468 CATGTTCTAGACATGCCTTACACTAGCTCTA-GTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACT-GCTCTACATCTCAAGGCCGATG
* * ** *
121869514 CCATGTCCCAGAAATGTTCTTACACTGGCTCT-CATAAT-GTGGCCAATG
1 -CATGTCCCAGACATG-TCTTACACT-GCTCTACAT-CTCAAGGCCGATG
*
121869562 CATGTCCCATACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
121869586 TGCATACAAA
Statistics
Matches: 164, Mismatches: 31, Indels: 28
0.74 0.14 0.13
Matches are distributed among these distances:
43 5 0.03
44 36 0.22
45 15 0.09
46 32 0.20
47 29 0.18
48 21 0.13
49 2 0.01
50 24 0.15
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGCTCTACATCTCAAGGCCGATG
Found at i:121873184 original size:12 final size:12
Alignment explanation
Indices: 121873169--121873195 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
121873159 ATGATTCAAA
121873169 AAATGAATAATT
1 AAATGAATAATT
121873181 AAATGAATAATT
1 AAATGAATAATT
121873193 AAA
1 AAA
121873196 ATAACCATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (12 bp):
AAATGAATAATT
Found at i:121877366 original size:39 final size:39
Alignment explanation
Indices: 121877317--121877396 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
121877307 GGTGTTAAAG
*
121877317 AAGTATTTATCTCTACTTAAGGTTGCCATTTTGAGTCTA
1 AAGTATTTATCTCTACTTAAGGTTGCCATATTGAGTCTA
121877356 AAGTATTTATCTCTACTTAAGGTTGCCATATTGAGTCTA
1 AAGTATTTATCTCTACTTAAGGTTGCCATATTGAGTCTA
121877395 AA
1 AA
121877397 AATGGACAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (39 bp):
AAGTATTTATCTCTACTTAAGGTTGCCATATTGAGTCTA
Found at i:121878887 original size:31 final size:31
Alignment explanation
Indices: 121878840--121878899 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
121878830 TGCCCGATTA
*
121878840 AAAATTCAAAAATCAATTTAATCTATAAAAAT
1 AAAATTCAAAAATCAATTTAAACT-TAAAAAT
*
121878872 AAAA-TCAAAATTCAATTTAAACTTAAAA
1 AAAATTCAAAAATCAATTTAAACTTAAAA
121878900 TTTAACAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 5 0.19
31 17 0.65
32 4 0.15
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.30
Consensus pattern (31 bp):
AAAATTCAAAAATCAATTTAAACTTAAAAAT
Found at i:121881322 original size:47 final size:47
Alignment explanation
Indices: 121881213--121881323 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
121881203 CCGGGATAAG
*
121881213 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
121881260 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
121881307 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
121881324 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:121888580 original size:47 final size:47
Alignment explanation
Indices: 121888471--121888581 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
121888461 CCGGGATAAG
*
121888471 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
121888518 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
121888565 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
121888582 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:121894525 original size:21 final size:21
Alignment explanation
Indices: 121894487--121894526 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
121894477 TTCTTTTCTC
121894487 ATAACAAAAACTATATTATAT
1 ATAACAAAAACTATATTATAT
*
121894508 ATAATCAAATACTA-ATTAT
1 ATAA-CAAAAACTATATTAT
121894527 TACTAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (21 bp):
ATAACAAAAACTATATTATAT
Found at i:121896140 original size:26 final size:26
Alignment explanation
Indices: 121896094--121896154 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 26
121896084 TAAATAACCA
*
121896094 TATTTTTTTTACAAATTTTAATCATTT
1 TATTTTTTTTACAAATGTTAAT-ATTT
121896121 TATTTTTTTT-CATAA-GTTAATATTT
1 TATTTTTTTTACA-AATGTTAATATTT
*
121896146 T-TTATTTTT
1 TATTTTTTTT
121896155 GTGCAACCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 7 0.23
25 5 0.16
26 7 0.23
27 12 0.39
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (26 bp):
TATTTTTTTTACAAATGTTAATATTT
Found at i:121897661 original size:160 final size:161
Alignment explanation
Indices: 121897491--121897795 Score: 386
Period size: 161 Copynumber: 1.9 Consensus size: 161
121897481 ATTTTTAAAT
*
121897491 TAAATAAAATCTATTTCAGGA-TT-TTTTCCCATCGTTCAACAAATTTTATTCTC-TATTTTGT-
1 TAAATAAAATCCATTTCAGGATTTATTTTCCC--CGTTCAACAAATTTTATTC-CAT-TTTTGTA
* * * * * *
121897552 TTTTATTTCC-AAACGAATATTAAAATTAAATAAAGTCTATTTCGAGATTTATTCCCGCCTTTTA
62 TTTTACTTCCAAAACGAATATTAAAATCAAATAAAATCTATTTCGAGATTTATTCCCCCCGTTCA
* *
121897616 ACAGATTTTATTCTATTTTATTTCCAAATTAAAAG
127 ACAGACTTTATTCCATTTTATTTCCAAATTAAAAG
* * *** *
121897651 TAAATAAAATCCGTTTCAGGATTTATTTTCGCCGTTCAACGGGTTTTATTCCATTTTTTTATTTT
1 TAAATAAAATCCATTTCAGGATTTATTTTCCCCGTTCAACAAATTTTATTCCATTTTTGTATTTT
* *
121897716 ACTTCCAAAACGAGTATTAAAATCAAATAAAATCTGTTTCGAGATTTATTCCCCCCGTTCAACAG
66 ACTTCCAAAACGAATATTAAAATCAAATAAAATCTATTTCGAGATTTATTCCCCCCGTTCAACAG
121897781 ACTTTATTCCATTTT
131 ACTTTATTCCATTTT
121897796 TGATTTTGTT
Statistics
Matches: 123, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
159 6 0.05
160 45 0.37
161 66 0.54
162 6 0.05
ACGTcount: A:0.31, C:0.17, G:0.09, T:0.43
Consensus pattern (161 bp):
TAAATAAAATCCATTTCAGGATTTATTTTCCCCGTTCAACAAATTTTATTCCATTTTTGTATTTT
ACTTCCAAAACGAATATTAAAATCAAATAAAATCTATTTCGAGATTTATTCCCCCCGTTCAACAG
ACTTTATTCCATTTTATTTCCAAATTAAAAG
Found at i:121897841 original size:87 final size:86
Alignment explanation
Indices: 121897643--121897940 Score: 330
Period size: 87 Copynumber: 3.4 Consensus size: 86
121897633 TTATTTCCAA
* * ** * * *
121897643 ATTAAAAGTAAATAAAATCCGTTTC-AGGATTTATTTTCGCCGTTCAACGGGTTTTATTCCATTT
1 ATTAAAATTAAATAAAATCTGTTTCGA-GATTTATTCCCACCGTTCAACAGATTTTATTCCA-TT
* *
121897707 TTTTATTTTACTTCCAAAACGAGT
64 TTTGATTTT-GTTCCAAAACGAGT
* * *
121897731 ATTAAAATCAAATAAAATCTGTTTCGAGATTTATTCCCCCCGTTCAACAGACTTTATTCCATTTT
1 ATTAAAATTAAATAAAATCTGTTTCGAGATTTATTCCCACCGTTCAACAGATTTTATTCCATTTT
121897796 TGATTTTGTTCCCAAAACGAGT
66 TGATTTTGTT-CCAAAACGAGT
* * * * * *
121897818 ATTAAAATTAAATAAAATTTGTTTCGGGATTTATTCCTACTGTTCAAAAGATTTTATTCCATTCT
1 ATTAAAATTAAATAAAATCTGTTTCGAGATTTATTCCCACCGTTCAACAGATTTTATTCCATTTT
* *
121897883 CGATTTTGTTGCC-AAACGAGAA
66 TGATTTTGTT-CCAAAACGAG-T
* *
121897905 ATTAAAATTAAATAAAATTTGTTTTGAGATTTATTC
1 ATTAAAATTAAATAAAATCTGTTTCGAGATTTATTC
121897941 TTGTCGTTTA
Statistics
Matches: 182, Mismatches: 25, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
86 9 0.05
87 122 0.67
88 50 0.27
89 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (86 bp):
ATTAAAATTAAATAAAATCTGTTTCGAGATTTATTCCCACCGTTCAACAGATTTTATTCCATTTT
TGATTTTGTTCCAAAACGAGT
Found at i:121898033 original size:82 final size:81
Alignment explanation
Indices: 121897903--121898104 Score: 205
Period size: 81 Copynumber: 2.5 Consensus size: 81
121897893 GCCAAACGAG
* * ** * * * *
121897903 AAATTAAAATTAAA-T-AA-AATTTGTTTTGAGATTTATTCTTGTCGTTTAACAAATTTTATTCG
1 AAATTAGAATTAAATTGAATAATATGTTTTGAGATTTATTCCCGCCATTTAACAAACTCTATTCG
121897965 ATTTTAATATGGTTTC-C
66 ATTTT-ATATGG-TTCGC
* * * * *
121897982 AAATTAGAATTAAATTGTATAATCTGTTTTGGGATTTATTCCCGCCATTTAATAGACTCTATTCG
1 AAATTAGAATTAAATTGAATAATATGTTTTGAGATTTATTCCCGCCATTTAACAAACTCTATTCG
* * *
121898047 ATTTTTTTTTGTTCGC
66 ATTTTATATGGTTCGC
*
121898063 AAATTAGAATTAAATTGAATAATATGTTTCGAGATTTATTCC
1 AAATTAGAATTAAATTGAATAATATGTTTTGAGATTTATTCC
121898105 TGTCGGTTAA
Statistics
Matches: 100, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
79 13 0.13
80 4 0.04
81 43 0.43
82 40 0.40
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.46
Consensus pattern (81 bp):
AAATTAGAATTAAATTGAATAATATGTTTTGAGATTTATTCCCGCCATTTAACAAACTCTATTCG
ATTTTATATGGTTCGC
Found at i:121903285 original size:10 final size:10
Alignment explanation
Indices: 121903270--121903299 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
121903260 ATATCTAGAA
121903270 TTCTCTTCAT
1 TTCTCTTCAT
121903280 TTCTCTTCAT
1 TTCTCTTCAT
121903290 TTCTCTTCAT
1 TTCTCTTCAT
121903300 ATTCATTAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.10, C:0.30, G:0.00, T:0.60
Consensus pattern (10 bp):
TTCTCTTCAT
Found at i:121904837 original size:50 final size:51
Alignment explanation
Indices: 121904770--121904898 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
121904760 GACCATGGAA
*
121904770 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATATGATCAAGGACAAA-TG
*
121904821 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATATGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATATGATCAAGGACAAATG
* * *
121904871 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
121904899 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 44 0.62
51 27 0.38
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATATGATCAAGGACAAATG
Found at i:121904912 original size:31 final size:31
Alignment explanation
Indices: 121904874--121905053 Score: 272
Period size: 31 Copynumber: 5.8 Consensus size: 31
121904864 ACAAATGACA
* *
121904874 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
121904905 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
121904936 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
121904967 AGTGAAAAGTGGTAGCTCCAGCTACCTGATT
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
121904998 AGTGAAAAGTGGTAG-TACCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCT-CCGGCTACCTGATC
* *
121905029 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTCCGGCTAC
121905054 AAGAGACAAG
Statistics
Matches: 138, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
30 1 0.01
31 136 0.99
32 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:121905155 original size:47 final size:47
Alignment explanation
Indices: 121905086--121905255 Score: 243
Period size: 47 Copynumber: 3.6 Consensus size: 47
121905076 AGTGATTTTC
121905086 GTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACT
1 GTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACT
* *
121905133 GTATAAGACTATATTTGGGATATGGCATCGGTGTGATATATGCTACT
1 GTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACT
* * * * *
121905180 GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTC-
1 GTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACT
* * *
121905226 GTGTAAGACCATACCTGGGCTATGGCATCG
1 GTATAAGACCATATCTGGGATATGGCATCG
121905256 ATATATGAAT
Statistics
Matches: 110, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
46 26 0.24
47 84 0.76
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (47 bp):
GTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACT
Found at i:121905286 original size:42 final size:43
Alignment explanation
Indices: 121905226--121905340 Score: 144
Period size: 42 Copynumber: 2.7 Consensus size: 43
121905216 TATGTGATTC
* *
121905226 GTGTAAGACCATACCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAACTGGGCTATGGCATCGATTATATGAAGAT
* *
121905268 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAACTGGGCTATGGCATCGATTATATGAAGAT
* * **
121905310 GTGTAAGTCCATAATTGAACTATGGCATCGA
1 GTGTAAGACCATAACTGGGCTATGGCATCGA
121905341 GAAGACGAAG
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.02
42 61 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATAACTGGGCTATGGCATCGATTATATGAAGAT
Found at i:121906844 original size:2 final size:2
Alignment explanation
Indices: 121906839--121906865 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
121906829 ACACATTTAA
121906839 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
121906866 CATCATTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:121907143 original size:39 final size:39
Alignment explanation
Indices: 121907103--121907285 Score: 321
Period size: 39 Copynumber: 4.7 Consensus size: 39
121907093 GCACGTGGCT
* * *
121907103 TGCGGACTTCAAGTCCGGATATATTTCCAGCATATAGCT
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
*
121907142 TGCGGACCTCATGTCCGGATATATTCCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
*
121907181 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
121907220 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
121907259 TGCGGACCTCATGTCCGGATATATTTC
1 TGCGGACCTCATGTCCGGATATATTTC
121907286 AAATACCATG
Statistics
Matches: 137, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 137 1.00
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (39 bp):
TGCGGACCTCATGTCCGGATATATTTCCAGCATATAGCC
Found at i:121912399 original size:39 final size:39
Alignment explanation
Indices: 121912356--121912536 Score: 292
Period size: 39 Copynumber: 4.6 Consensus size: 39
121912346 ATGTGGCTTA
* *
121912356 CGGACTTCAAGTCCGAATATATTTCCAGCATATAGCCTG
1 CGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTG
* *
121912395 CGGACCTCATGTCCGGATATATTCCCAGCATATAGCCTG
1 CGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTG
*
121912434 CGGACTTCATGTCCGGATATATTTTCAGCATATAGCCTG
1 CGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTG
*
121912473 CGGACCTCATGTCCGGATATATTTCCAGCATATAGCCTG
1 CGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTG
121912512 CGGACCTT-ATGTCCGGATATATTTC
1 CGGA-CTTCATGTCCGGATATATTTC
121912537 AAATACCATG
Statistics
Matches: 131, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 129 0.98
40 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (39 bp):
CGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTG
Done.