Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 392 of 433
Found at i:121916805 original size:12 final size:12
Alignment explanation
Indices: 121916788--121916813 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
121916778 ACATTTACTG
121916788 AACTTAGCATAT
1 AACTTAGCATAT
121916800 AACTTAGCATAT
1 AACTTAGCATAT
121916812 AA
1 AA
121916814 GCCTAGGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (12 bp):
AACTTAGCATAT
Found at i:121919068 original size:40 final size:40
Alignment explanation
Indices: 121919023--121919190 Score: 189
Period size: 40 Copynumber: 4.2 Consensus size: 40
121919013 TCGGATACAA
* * *
121919023 CCGGATATAACCACACACACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * *
121919063 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAAC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
*
121919103 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
* *
121919143 CCGGATA-AAGTC-ACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA--CAACTCGCACGAA-TGCCTTCGGGTCTTAGC
*
121919183 CCAGATAT
1 CCGGATAT
121919191 CATTCAATTG
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 4 0.04
40 105 0.95
41 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:121919163 original size:80 final size:80
Alignment explanation
Indices: 121919040--121919190 Score: 234
Period size: 80 Copynumber: 1.9 Consensus size: 80
121919030 TAACCACACA
*
121919040 CACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAACCC
1 CACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATGCCTTCGGGTATTAACCC
*
121919105 GGATATAACAACTTG
66 AGATATAACAACTTG
* *
121919120 CACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAATGCCTTCGGGTATTAAC
121919183 CCAGATAT
64 CCAGATAT
121919191 CATTCAATTG
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
78 1 0.02
79 2 0.03
80 62 0.95
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATGCCTTCGGGTATTAACCC
AGATATAACAACTTG
Found at i:121924913 original size:13 final size:14
Alignment explanation
Indices: 121924892--121924924 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
121924882 GAAAGAAAGG
*
121924892 AGAAGAGAAGGA-A
1 AGAAAAGAAGGAGA
121924905 AGAAAAGAAGGAGA
1 AGAAAAGAAGGAGA
121924919 AGAAAA
1 AGAAAA
121924925 AAGAAGGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (14 bp):
AGAAAAGAAGGAGA
Found at i:121931623 original size:12 final size:13
Alignment explanation
Indices: 121931608--121931640 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
121931598 GCAAACGTGA
121931608 GAAAGAAAGA-AG
1 GAAAGAAAGAGAG
121931620 GAAAGAAAGAGAG
1 GAAAGAAAGAGAG
*
121931633 AAAAGAAA
1 GAAAGAAA
121931641 AGGGAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (13 bp):
GAAAGAAAGAGAG
Found at i:121933941 original size:12 final size:13
Alignment explanation
Indices: 121933926--121933955 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
121933916 ATTTTGACAC
121933926 TTTTTCGTAT-TT
1 TTTTTCGTATCTT
121933938 TTTTTCGTATCTT
1 TTTTTCGTATCTT
121933951 TTTTT
1 TTTTT
121933956 AAATATATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.07, C:0.10, G:0.07, T:0.77
Consensus pattern (13 bp):
TTTTTCGTATCTT
Found at i:121934048 original size:20 final size:22
Alignment explanation
Indices: 121934009--121934049 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
121933999 TAGTACATAA
121934009 TGTTTTAAATATATTATTTAAG
1 TGTTTTAAATATATTATTTAAG
121934031 TGTTTTAAATAT-TT-TTTAA
1 TGTTTTAAATATATTATTTAA
121934050 TAAATAACCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 2 0.11
22 12 0.63
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (22 bp):
TGTTTTAAATATATTATTTAAG
Found at i:121934066 original size:146 final size:144
Alignment explanation
Indices: 121933649--121934734 Score: 1099
Period size: 146 Copynumber: 7.3 Consensus size: 144
121933639 GGACGTTACA
* * * * *
121933649 TTTTCGTATCTT-TTTTTT-AAATATATTACTTTCGTATTATTTAATTTTAAAACCCTTATTTTA
1 TTTTCGTATATTATTTTTTAAAATATATTATTTTCGTA-T-TTTATTTTTTATA---TTATTTTA
* * *
121933712 GTACATAATGTTTTAAATATATTATTTAAGTGTTTTAAATATTATTTTAATAAATAACCCTGATT
61 GTACATAATGTTTCAAATGTATTATTTAAGTGTTTTATATATT-TTTTAATAAATAACCCTGATT
*
121933777 TTAGCACTTTATTC--ATAT
125 TTAGCACTTTATTCGTATTT
*
121933795 TTTTCGTATATTATTTTTTAAAATATATTATTTTCCTATTTTATTTTTTATATTATTTTAG-A-A
1 TTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTATTTTAGTACA
* * * * * * *
121933858 AAATGTTTTAAATGTATTATGTAAGTATTTTTTTATATTAATTTAATAAATAACACTGATTTT-G
66 TAATGTTTCAAATGTATTATTTAAGT-GTTTTATATATT-TTTTAATAAATAACCCTGATTTTAG
121933922 ACACTTT-TTCGTATTTT
129 -CACTTTATTCGTA-TTT
* * * * *
121933939 TTTTCGTAT-CT-TTTTTT-AAATATATTACTTTCGTATTATTTAATTTTAAAACCCTTATTTTA
1 TTTTCGTATATTATTTTTTAAAATATATTATTTTCGTA-T-TTTATTTTTTATA---TTATTTTA
* * *
121934001 GTACATAATGTTTTAAATATATTATTTAAGTGTTTTAAATATTTTTTAATAAATAACCCTGATTT
61 GTACATAATGTTTCAAATGTATTATTTAAGTGTTTTATATATTTTTTAATAAATAACCCTGATTT
*
121934066 TAGCACTTTATTCATA-TT
126 TAGCACTTTATTCGTATTT
* * *
121934084 TTTTCGTATATTATTTTTTAAAATATATTATTTTCCTATTTTATTTTTTTATATTATTTTAGCAA
1 TTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTA-TTTTTTATATTATTTTAGTAC
* * ** *
121934149 AAAATGTTTCAAATGTATTATGTATATTATGTAAGTGTTTTTTATACTAATTTAATAAATAACCT
65 ATAATGTTTCAAATG---TA--T-TA-T-T-TAAGTGTTTTATATA-TTTTTTAATAAATAACCC
*
121934214 TGATTTT-GACACTTTTTTCGTATTT
120 TGATTTTAG-CACTTTATTCGTATTT
* *
121934239 TTTT-GTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTCATATTATTTTAGTAC
1 TTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTT-TTTATATTATTTTAGTAC
* * *
121934303 ATAATGTTTCAAATGTATTATTTCAA-TATTTTTTATATTTTTTCAATAAATATCCCTGATTTTA
65 ATAATGTTTCAAATGTATTATTT-AAGTGTTTTATATATTTTTT-AATAAATAACCCTGATTTTA
121934367 GCACTTTATTCGTATTT
128 GCACTTTATTCGTATTT
* * *
121934384 TTTTCGTATATTATTTTTTAAAATATATTATTTTCTTATTTTATTTTTTATATTATTTTAGCAAA
1 TTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTATTTTAGTACA
* *** * * *
121934449 AAAAAATTCAAATGTATTAATTAACTGTTTCTTTATATTAAGGGTTTTTTACTAAATAACCCTGA
66 TAATGTTTCAAATGTATTATTTAA--GTGT-TTTATA-T-A---TTTTTTAATAAATAACCCTGA
* *
121934514 TTTT-GATACTTTCTTCGTAATTTTTTT
123 TTTTAG-CACTTTATTCGT-A----TTT
*
121934541 ATTTTCGTATATTATTTTTTAATATATATTATTTTCGTATTTTATTTCTTTATATTATTTTAGTA
1 -TTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTT-TTTATATTATTTTAGTA
* * *
121934606 CATAATGCTTCAAATGTATTATTTAAGTATTATT-TATATTTTTTTAATAAATAACCCTAATTTT
64 CATAATGTTTCAAATGTATTATTTAAGTGTT-TTATATA-TTTTTTAATAAATAACCCTGATTTT
*
121934670 AGCACTTTATTAGTATTT
127 AGCACTTTATTCGTATTT
*
121934688 TTTTCGTATATTATTTTTTAAAATATATTATTTTGGTATTTTATTTT
1 TTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTT
121934735 ACCATAAAAT
Statistics
Matches: 790, Mismatches: 94, Indels: 113
0.79 0.09 0.11
Matches are distributed among these distances:
141 44 0.06
142 45 0.06
143 21 0.03
144 39 0.05
145 92 0.12
146 149 0.19
147 44 0.06
148 63 0.08
149 3 0.00
150 3 0.00
151 5 0.01
152 60 0.08
153 25 0.03
154 99 0.13
155 7 0.01
156 3 0.00
157 8 0.01
158 44 0.06
159 36 0.05
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.56
Consensus pattern (144 bp):
TTTTCGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTATTTTAGTACA
TAATGTTTCAAATGTATTATTTAAGTGTTTTATATATTTTTTAATAAATAACCCTGATTTTAGCA
CTTTATTCGTATTT
Found at i:121934100 original size:15 final size:14
Alignment explanation
Indices: 121934080--121934143 Score: 51
Period size: 13 Copynumber: 4.4 Consensus size: 14
121934070 ACTTTATTCA
121934080 TATTTTTTCGTATAT
1 TATTTTTTC-TATAT
*
121934095 TATTTTTTAAAATATAT
1 TATTTTTT---CTATAT
* *
121934112 TA-TTTTCCTATTT
1 TATTTTTTCTATAT
121934125 TATTTTTT-TATAT
1 TATTTTTTCTATAT
121934138 TATTTT
1 TATTTT
121934144 AGCAAAAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
13 16 0.41
14 4 0.10
15 8 0.21
16 4 0.10
17 7 0.18
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.69
Consensus pattern (14 bp):
TATTTTTTCTATAT
Found at i:121934439 original size:12 final size:13
Alignment explanation
Indices: 121934407--121934442 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
121934397 TTTTTTAAAA
121934407 TATATTATTTTCT
1 TATATTATTTTCT
*
121934420 TATTTTATTTT-T
1 TATATTATTTTCT
121934432 TATATTATTTT
1 TATATTATTTT
121934443 AGCAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (13 bp):
TATATTATTTTCT
Found at i:121934573 original size:30 final size:29
Alignment explanation
Indices: 121934539--121934599 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 29
121934529 CGTAATTTTT
121934539 TTATTTTCGTATATTATTT-TTTAATATATA
1 TTATTTTCGTATATTATTTCTTT-ATAT-TA
*
121934569 TTATTTTCGTATTTTATTTCTTTATATTA
1 TTATTTTCGTATATTATTTCTTTATATTA
121934598 TT
1 TT
121934600 TTAGTACATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 4 0.14
30 22 0.76
31 3 0.10
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.67
Consensus pattern (29 bp):
TTATTTTCGTATATTATTTCTTTATATTA
Found at i:121934644 original size:304 final size:291
Alignment explanation
Indices: 121933649--121934734 Score: 1353
Period size: 304 Copynumber: 3.7 Consensus size: 291
121933639 GGACGTTACA
121933649 TTTTCGTATCTTTTTTTTAAATATATTACTTTCGTATTATTTAATTTTAAAACCCTTATTTTAGT
1 TTTTCGTATCTTTTTTTTAAATATATTACTTTCGTATTATTTAATTTTAAAA--CTTATTTTAGT
* *
121933714 ACATAATGTTTTAAATATATTATTTAAGTGTTTTAAATATTATTTTAATAAATAACCCTGATTTT
64 ACATAATGTTTCAAATATATTATTTAAGTATTTTAAATATT-TTTTAATAAATAACCCTGATTTT
*
121933779 AGCACTTTATTC--ATATTTTTCGTATATTATTTTTTAAAATATATTATTTTCCTATTTTATTTT
128 AGCACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATATTATTTTCCTATTTTATTTT
* *
121933842 TTATATTATTTTAG--AAAAATGTTTTAAATGTATT-ATGTAAGTATTTTTTTATATTAATTTAA
193 TTATATTATTTTAGCAAAAAATGTTTCAAATGTATTAATGTAAGT-GTTTTTTATATTAATTTAA
*
121933904 TAAATAACACTGATTTTGACACTTTTTCGTATTTT
257 TAAATAACCCTGATTTTGACACTTTTTCGTATTTT
121933939 TTTTCGTATC-TTTTTTTAAATATATTACTTTCGTATTATTTAATTTTAAAACCCTTATTTTAGT
1 TTTTCGTATCTTTTTTTTAAATATATTACTTTCGTATTATTTAATTTTAAAA--CTTATTTTAGT
* *
121934003 ACATAATGTTTTAAATATATTATTTAAGTGTTTTAAATATTTTTTAATAAATAACCCTGATTTTA
64 ACATAATGTTTCAAATATATTATTTAAGTATTTTAAATATTTTTTAATAAATAACCCTGATTTTA
*
121934068 GCACTTTATTCATA-TTTTTTCGTATATTATTTTTTAAAATATATTATTTTCCTATTTTATTTTT
129 GCACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATATTATTTTCCTATTTTA-TTTT
*
121934132 TTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTATATTATGTAAGTGTTTTTTATACT
193 TTATATTATTTTAGCAAAAAATGTTTCAAATG---TA--T-TA--ATGTAAGTGTTTTTTATATT
*
121934197 AATTTAATAAATAACCTTGATTTTGACACTTTTTTCGTA-TTT
250 AATTTAATAAATAACCCTGATTTTGACAC-TTTTTCGTATTTT
* * * *
121934239 TTTT-GTATCTTATTTTTTAAAATATATTATTTTCGTA-T-TTTATTTCTTCATA-TTATTTTAG
1 TTTTCGTATCTT-TTTTTT-AAATATATTACTTTCGTATTATTTAATT-TTAAAACTTATTTTAG
* ** *
121934300 TACATAATGTTTCAAATGTATTATTTCAA-TATTTTTTATATTTTTTCAATAAATATCCCTGATT
63 TACATAATGTTTCAAATATATTATTT-AAGTATTTTAAATATTTTTT-AATAAATAACCCTGATT
*
121934364 TTAGCACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATATTATTTTCTTATTTTATT
126 TTAGCACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATATTATTTTCCTATTTTATT
*** *
121934429 TTTTATATTATTTTAGCAAAAAAAAATTCAAATGTATTAAT-TAACTGTTTCTTTATATTAAGGG
191 TTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTAATGTAAGTGTTT-TTTATATTAA---
* *
121934493 TTTTTTACTAAATAACCCTGATTTTGATACTTTCTTCGTAATTTTTTT
252 ---TTTAATAAATAACCCTGATTTTGACACTTT-TTCGT-A---TTTT
* * * * *
121934541 ATTTTCGTATATTATTTTTTAATATATATTATTTTCGTA-T-TTTATTTCTTTATA-TTATTTTA
1 -TTTTCGTATCTT-TTTTTTAA-ATATATTACTTTCGTATTATTTAATT-TTAAAACTTATTTTA
* * * *
121934603 GTACATAATGCTTCAAATGTATTATTTAAGTATTATT-TATATTTTTTTAATAAATAACCCTAAT
62 GTACATAATGTTTCAAATATATTATTTAAGTATT-TTAAATA-TTTTTTAATAAATAACCCTGAT
* **
121934667 TTTAGCACTTTATTAGTATTTTTTTCGTATATTATTTTTTAAAATATATTATTTTGGTATTTTAT
125 TTTAGCACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATATTATTTTCCTATTTTAT
121934732 TTT
190 TTT
121934735 ACCATAAAAT
Statistics
Matches: 721, Mismatches: 34, Indels: 68
0.88 0.04 0.08
Matches are distributed among these distances:
288 35 0.05
289 139 0.19
290 37 0.05
291 11 0.02
292 15 0.02
293 2 0.00
294 1 0.00
295 2 0.00
296 5 0.01
297 30 0.04
298 49 0.07
299 72 0.10
300 95 0.13
301 28 0.04
302 20 0.03
303 8 0.01
304 164 0.23
305 8 0.01
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.56
Consensus pattern (291 bp):
TTTTCGTATCTTTTTTTTAAATATATTACTTTCGTATTATTTAATTTTAAAACTTATTTTAGTAC
ATAATGTTTCAAATATATTATTTAAGTATTTTAAATATTTTTTAATAAATAACCCTGATTTTAGC
ACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATATTATTTTCCTATTTTATTTTTTA
TATTATTTTAGCAAAAAATGTTTCAAATGTATTAATGTAAGTGTTTTTTATATTAATTTAATAAA
TAACCCTGATTTTGACACTTTTTCGTATTTT
Found at i:121934858 original size:30 final size:31
Alignment explanation
Indices: 121934822--121934880 Score: 102
Period size: 30 Copynumber: 1.9 Consensus size: 31
121934812 CATATTTTTT
121934822 TATTTTCAGATTTTATTTTTTTA-ATTATAC
1 TATTTTCAGATTTTATTTTTTTATATTATAC
*
121934852 TATTTTCATATTTTATTTTTTTATATTAT
1 TATTTTCAGATTTTATTTTTTTATATTAT
121934881 TTTAACAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.68
Consensus pattern (31 bp):
TATTTTCAGATTTTATTTTTTTATATTATAC
Found at i:121935291 original size:15 final size:15
Alignment explanation
Indices: 121935271--121935302 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
121935261 TTTAAATCTA
121935271 AAACGTTATTAAACT
1 AAACGTTATTAAACT
121935286 AAACGTTATTAAACT
1 AAACGTTATTAAACT
121935301 AA
1 AA
121935303 CATTAATTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.31
Consensus pattern (15 bp):
AAACGTTATTAAACT
Found at i:121935392 original size:19 final size:19
Alignment explanation
Indices: 121935346--121935392 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
121935336 TTTTTCTTTC
121935346 CTTC-TTTT-TCCTTCTCT
1 CTTCTTTTTCTCCTTCTCT
*
121935363 CTTCTTCTTCTCCTTCTCT
1 CTTCTTTTTCTCCTTCTCT
* *
121935382 TTTTTTTTTCT
1 CTTCTTTTTCT
121935393 TTTTTCTTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 4 0.17
18 3 0.12
19 17 0.71
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (19 bp):
CTTCTTTTTCTCCTTCTCT
Found at i:121935447 original size:3 final size:3
Alignment explanation
Indices: 121935441--121935505 Score: 57
Period size: 3 Copynumber: 22.7 Consensus size: 3
121935431 TCCTTTTTCT
* * *
121935441 TTC TTC TTC TTC -TC TTC TTC -CC TTC TTC -CC TTC TTC -CC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
*
121935485 TCTC TTT TTC TTC TTC TTC TT
1 T-TC TTC TTC TTC TTC TTC TT
121935506 TGCCGAAAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
2 5 0.10
3 41 0.84
4 3 0.06
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (3 bp):
TTC
Found at i:121935458 original size:8 final size:8
Alignment explanation
Indices: 121935445--121935505 Score: 65
Period size: 8 Copynumber: 7.9 Consensus size: 8
121935435 TTTTCTTTCT
121935445 TCTTCTTC
1 TCTTCTTC
121935453 TCTTCTTC
1 TCTTCTTC
*
121935461 CCTTCTTC
1 TCTTCTTC
*
121935469 CCTTCTTC
1 TCTTCTTC
*
121935477 CCTTCTTC
1 TCTTCTTC
121935485 TC-TCTT-
1 TCTTCTTC
121935491 T-TTCTTC
1 TCTTCTTC
121935498 TTCTTCTT
1 -TCTTCTT
121935506 TGCCGAAAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
6 5 0.11
7 4 0.09
8 33 0.70
9 5 0.11
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (8 bp):
TCTTCTTC
Found at i:121935467 original size:16 final size:16
Alignment explanation
Indices: 121935446--121935487 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
121935436 TTTCTTTCTT
121935446 CTTCTTCTCTTCTTCC
1 CTTCTTCTCTTCTTCC
*
121935462 CTTCTTCCCTTCTTCC
1 CTTCTTCTCTTCTTCC
121935478 CTTCTTCTCT
1 CTTCTTCTCT
121935488 CTTTTTCTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (16 bp):
CTTCTTCTCTTCTTCC
Found at i:121944704 original size:19 final size:19
Alignment explanation
Indices: 121944677--121944739 Score: 51
Period size: 19 Copynumber: 3.5 Consensus size: 19
121944667 TTATATTAAC
*
121944677 TTATTTATTTAAAAATATT
1 TTATATATTTAAAAATATT
** * *
121944696 TTATATA-TT--GCAGACT
1 TTATATATTTAAAAATATT
*
121944712 TTATTTATTTAAAAATATT
1 TTATATATTTAAAAATATT
121944731 TTATATATT
1 TTATATATT
121944740 GCAGACTGAG
Statistics
Matches: 30, Mismatches: 11, Indels: 6
0.64 0.23 0.13
Matches are distributed among these distances:
16 9 0.30
17 2 0.07
18 2 0.07
19 17 0.57
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (19 bp):
TTATATATTTAAAAATATT
Found at i:121944723 original size:35 final size:35
Alignment explanation
Indices: 121944677--121944746 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
121944667 TTATATTAAC
121944677 TTATTTATTTAAAAATATTTTATATATTGCAGACT
1 TTATTTATTTAAAAATATTTTATATATTGCAGACT
121944712 TTATTTATTTAAAAATATTTTATATATTGCAGACT
1 TTATTTATTTAAAAATATTTTATATATTGCAGACT
121944747 GAGTCTTAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.06, G:0.06, T:0.51
Consensus pattern (35 bp):
TTATTTATTTAAAAATATTTTATATATTGCAGACT
Found at i:121948107 original size:18 final size:20
Alignment explanation
Indices: 121948071--121948110 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
121948061 TTATATAATT
*
121948071 TATTTTATTTCTTTATTTTA
1 TATTTTATATCTTTATTTTA
121948091 TATTTTATAT-TTT-TTTTA
1 TATTTTATATCTTTATTTTA
121948109 TA
1 TA
121948111 ATCACTCACC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 3 0.16
20 9 0.47
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.75
Consensus pattern (20 bp):
TATTTTATATCTTTATTTTA
Found at i:121951306 original size:11 final size:11
Alignment explanation
Indices: 121951269--121951336 Score: 54
Period size: 11 Copynumber: 6.5 Consensus size: 11
121951259 GTCCTCTAAT
121951269 AATTTCTCT-A
1 AATTTCTCTCA
*
121951279 AA-TTCCCTCCA
1 AATTTCTCT-CA
121951290 AA-TTCTCTCA
1 AATTTCTCTCA
121951300 AATTTCTCTCA
1 AATTTCTCTCA
*
121951311 TATTT-TCTCA
1 AATTTCTCTCA
** *
121951321 AAGCTCTCTTA
1 AATTTCTCTCA
121951332 AATTT
1 AATTT
121951337 TTGCAAAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
9 5 0.11
10 13 0.29
11 27 0.60
ACGTcount: A:0.28, C:0.26, G:0.01, T:0.44
Consensus pattern (11 bp):
AATTTCTCTCA
Found at i:121951336 original size:21 final size:21
Alignment explanation
Indices: 121951288--121951337 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
121951278 AAATTCCCTC
* **
121951288 CAAATTCTCTCAAATTTCTCT
1 CAAATTTTCTCAAAGCTCTCT
*
121951309 CATATTTTCTCAAAGCTCTCT
1 CAAATTTTCTCAAAGCTCTCT
*
121951330 TAAATTTT
1 CAAATTTT
121951338 TGCAAAAAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.28, C:0.24, G:0.02, T:0.46
Consensus pattern (21 bp):
CAAATTTTCTCAAAGCTCTCT
Found at i:121953066 original size:30 final size:30
Alignment explanation
Indices: 121953006--121953066 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
121952996 ATGCAGTCCT
*
121953006 ATCAACAGCGCCCACACAATCACTGAGCCC
1 ATCAACAGCGCCCACACAATCACCGAGCCC
* * *
121953036 ATCAATAGCGCCCACACAGTCACCGGGCCC
1 ATCAACAGCGCCCACACAATCACCGAGCCC
121953066 A
1 A
121953067 ACACTTCAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.43, G:0.16, T:0.10
Consensus pattern (30 bp):
ATCAACAGCGCCCACACAATCACCGAGCCC
Found at i:121953661 original size:9 final size:9
Alignment explanation
Indices: 121953647--121953678 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
121953637 TTAAATAAGG
121953647 TAATATTTT
1 TAATATTTT
121953656 TAATATTTT
1 TAATATTTT
*
121953665 TTATATTTT
1 TAATATTTT
121953674 TAATA
1 TAATA
121953679 AAATATAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (9 bp):
TAATATTTT
Found at i:121956443 original size:20 final size:20
Alignment explanation
Indices: 121956418--121956464 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
121956408 TCAACCGAAG
121956418 CACAAAATCGATACTTAATA
1 CACAAAATCGATACTTAATA
121956438 CACAAAATCGATACTTAATA
1 CACAAAATCGATACTTAATA
*
121956458 GACAAAA
1 CACAAAA
121956465 CTTTCATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.53, C:0.19, G:0.06, T:0.21
Consensus pattern (20 bp):
CACAAAATCGATACTTAATA
Found at i:121957168 original size:126 final size:125
Alignment explanation
Indices: 121956739--121957301 Score: 850
Period size: 126 Copynumber: 4.5 Consensus size: 125
121956729 TCAAATAAGA
* * *
121956739 ACTACCGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTACATTCT
1 ACTACTGTAGCAAAAGAGCGTCCACGT-GGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
** * * * *
121956804 GTTTGAAGCATTTTGGATACTATTTATTCAGAAACTTCTTCTCAAAATTATTTTTTCAGAT
65 ACTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* * *
121956865 ATTACTGTAGCAAAAGAGCGTCCACGT--TGCTTTTTTCACTAATTTTGCTGACAGTGCATCCTA
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTA
* * *
121956928 CTTGAAGCGTTTTGGACACTATTT-TTCAAAAATGTCTTCTCAAAATTATTTTTT-AAAT
66 CTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* *
121956986 ACTACTATAGCAAAAGAGCGTTCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCGTCCACGT-GGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
121957051 ACTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
65 ACTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* *
121957112 ACTACTGTAGCAAAAGAGCATCCATGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTG-GAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
*
121957177 ACTTGAAGTGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTA-TTTTTCA-AT
65 ACTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* *
121957236 ACTACTGTAGCAAAAGAGCGTTCACGTGGAAGCTTTTTTCAGTAATTTTGCTAACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGG-AGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
121957301 A
65 A
121957302 ATTTAATTAA
Statistics
Matches: 399, Mismatches: 31, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
121 27 0.07
122 27 0.07
123 53 0.13
124 120 0.30
125 36 0.09
126 136 0.34
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (125 bp):
ACTACTGTAGCAAAAGAGCGTCCACGTGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTA
CTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
Found at i:121957286 original size:250 final size:247
Alignment explanation
Indices: 121956739--121957301 Score: 885
Period size: 247 Copynumber: 2.3 Consensus size: 247
121956729 TCAAATAAGA
* * * *
121956739 ACTACCGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTACATTCT
1 ACTACTGTAGCAAAAGAGCGTTCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
** * * *
121956804 GTTTGAAGCATTTTGGATACTATTTATTCAGAAACTTCTTCTCAAAATTATTTTTTCAGATATTA
66 ACTTGAAGCATTTTGGACACTATTTATTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATACTA
* *
121956869 CTGTAGCAAAAGAGCGTCCACGTTGCTTTTTTCACTAATTTTGCTGACAGTGCATCCTACTTGAA
131 CTGTAGCAAAAGAGCATCCACGTAGCTTTTTTCACTAATTTTGCTGACAGTGCATCCTACTTGAA
*
121956934 GCGTTTTGGACACTATTTTTCAAAAATGTCTTCTCAAAATTATTTTTTAAAT
196 GCGTTTTGGACACTATTTTTCAAAAACGTCTTCTCAAAATTATTTTTTAAAT
*
121956986 ACTACTATAGCAAAAGAGCGTTCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCGTTCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
* *
121957051 ACTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATACTA
66 ACTTGAAGCATTTTGGACACTATTTATTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATACTA
* *
121957116 CTGTAGCAAAAGAGCATCCATGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTACTT
131 CTGTAGCAAAAGAGCATCCACGT---AGCTTTTTTCACTAATTTTGCTGACAGTGCATCCTACTT
* * *
121957181 GAAGTGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTA-TTTTTCAAT
193 GAAGCGTTTTGGACACTATTT-TTCAAAAACGTCTTCTCAAAATTATTTTTTAAAT
* *
121957236 ACTACTGTAGCAAAAGAGCGTTCACGTGGAAGCTTTTTTCAGTAATTTTGCTAACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCGTTCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
121957301 A
66 A
121957302 ATTTAATTAA
Statistics
Matches: 289, Mismatches: 23, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
247 139 0.48
250 128 0.44
251 22 0.08
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (247 bp):
ACTACTGTAGCAAAAGAGCGTTCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
ACTTGAAGCATTTTGGACACTATTTATTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATACTA
CTGTAGCAAAAGAGCATCCACGTAGCTTTTTTCACTAATTTTGCTGACAGTGCATCCTACTTGAA
GCGTTTTGGACACTATTTTTCAAAAACGTCTTCTCAAAATTATTTTTTAAAT
Found at i:121957501 original size:152 final size:153
Alignment explanation
Indices: 121957298--121957587 Score: 435
Period size: 153 Copynumber: 1.9 Consensus size: 153
121957288 AACAGTGCAT
121957298 CCTAATTTAATTAATTAACCTAAAAACCCTAAACCTTAATTTAATTGATTTTTTT-AAATTAATA
1 CCTAATTTAATTAATTAACCTAAAAACCCTAAACCTTAATTTAATTGATTTTTTTAAAATTAATA
* * *
121957362 ATTAATTTAATTAATTAACCCTAAAG-CCTAATTTAATTAACCCTAAAATCATAAACACGATAAA
66 ATTAATTCAATTAATTAACCCT-AAGTCCTAATTTAATTAACCCTAAAACCATAAACACAATAAA
121957426 AACCTAAACCCGAAAACTCTAAAC
130 AACCTAAACCCGAAAACTCTAAAC
***
121957450 CCTAATTTAATTAATTAACCTTAAAAATTGTAAA-CTCTAATTTAATT-ATTTTTTTAAAATTAA
1 CCTAATTTAATTAATTAACC-TAAAAACCCTAAACCT-TAATTTAATTGATTTTTTTAAAATTAA
* *
121957513 TAGTTAATTCAATTAATTAACCCTAAGTCCTAATTTAATTAACCCTAAAACCCTAAACACAATAA
64 TAATTAATTCAATTAATTAACCCTAAGTCCTAATTTAATTAACCCTAAAACCATAAACACAATAA
**
121957578 AGTCCTAAAC
129 AAACCTAAAC
121957588 TTTTAAAACC
Statistics
Matches: 124, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
152 33 0.27
153 91 0.73
ACGTcount: A:0.45, C:0.18, G:0.03, T:0.35
Consensus pattern (153 bp):
CCTAATTTAATTAATTAACCTAAAAACCCTAAACCTTAATTTAATTGATTTTTTTAAAATTAATA
ATTAATTCAATTAATTAACCCTAAGTCCTAATTTAATTAACCCTAAAACCATAAACACAATAAAA
ACCTAAACCCGAAAACTCTAAAC
Found at i:121963507 original size:2 final size:2
Alignment explanation
Indices: 121963500--121963531 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
121963490 TGACTTGCTA
121963500 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121963532 TATGAATAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121970330 original size:28 final size:27
Alignment explanation
Indices: 121970290--121970367 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
121970280 GCAATCAAAT
* * *
121970290 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTG-GA
*
121970318 ATGGCACTTAGTGTGCGAGATATTGGA
1 ATGGCACTTAGTGTGCGAAATATTGGA
* *
121970345 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
121970368 CGAATGATTC
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 22 0.51
28 21 0.49
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (27 bp):
ATGGCACTTAGTGTGCGAAATATTGGA
Found at i:121970354 original size:27 final size:28
Alignment explanation
Indices: 121970299--121970367 Score: 95
Period size: 27 Copynumber: 2.5 Consensus size: 28
121970289 TATGGTACTC
* *
121970299 AGTGTACGAAATATTGAGAATGGCACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
121970327 AGTGTGCGAGATATTG-GAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
121970354 AGTGTGCAAAATAT
1 AGTGTGCGAAATAT
121970368 CGAATGATTC
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 22 0.61
28 14 0.39
ACGTcount: A:0.35, C:0.10, G:0.26, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATGACACTT
Found at i:121975033 original size:12 final size:12
Alignment explanation
Indices: 121975016--121975049 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
121975006 CCGGCCCGGC
121975016 TATATTAATTTT
1 TATATTAATTTT
121975028 TATATT-ATTTT
1 TATATTAATTTT
121975039 TATA-TAATTTT
1 TATATTAATTTT
121975050 AAAATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 14 0.67
12 6 0.29
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TATATTAATTTT
Found at i:121975207 original size:30 final size:29
Alignment explanation
Indices: 121975171--121975230 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
121975161 CAATTTAACA
121975171 AGCAAA-TGCATCTAAAATAATAACAAAATT
1 AGCAAATTGC-TCTAAAATAATAA-AAAATT
* *
121975201 AGCAAATTTCTTTAAAATAATAAAAAATT
1 AGCAAATTGCTCTAAAATAATAAAAAATT
121975230 A
1 A
121975231 ACAATAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 7 0.26
30 18 0.67
31 2 0.07
ACGTcount: A:0.57, C:0.10, G:0.05, T:0.28
Consensus pattern (29 bp):
AGCAAATTGCTCTAAAATAATAAAAAATT
Found at i:121976768 original size:2 final size:2
Alignment explanation
Indices: 121976761--121976787 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
121976751 TGGTACTAAG
121976761 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
121976788 AATAATAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:121976817 original size:33 final size:30
Alignment explanation
Indices: 121976773--121976842 Score: 86
Period size: 33 Copynumber: 2.2 Consensus size: 30
121976763 ATATATATAT
*
121976773 ATATATATATATATAAATAATAGTATTAGAA
1 ATATATATATATATAAATAATAATATTA-AA
* *
121976804 ATCATATAGTATATATAACTGATAATATTAAA
1 AT-ATATA-TATATATAAATAATAATATTAAA
121976836 ATATATA
1 ATATATA
121976843 CATAATATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 7 0.21
32 9 0.26
33 18 0.53
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.39
Consensus pattern (30 bp):
ATATATATATATATAAATAATAATATTAAA
Found at i:121977071 original size:3 final size:3
Alignment explanation
Indices: 121977057--121977086 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
121977047 ACAAGGATAT
*
121977057 ATA ATT ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
121977087 TTGAAACACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:121977204 original size:3 final size:3
Alignment explanation
Indices: 121977190--121977259 Score: 131
Period size: 3 Copynumber: 23.3 Consensus size: 3
121977180 AATGTATTTC
*
121977190 AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
121977238 AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT A
121977260 TTGAAATGCA
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:121977752 original size:11 final size:12
Alignment explanation
Indices: 121977736--121977771 Score: 58
Period size: 11 Copynumber: 3.2 Consensus size: 12
121977726 AAGGAAAAAA
121977736 GAAGAGAG-AGG
1 GAAGAGAGAAGG
121977747 GAAGAGAGAAGG
1 GAAGAGAGAAGG
121977759 G-AGAGAGAAGG
1 GAAGAGAGAAGG
121977770 GA
1 GA
121977772 GGGGAATCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:121977878 original size:12 final size:12
Alignment explanation
Indices: 121977861--121977924 Score: 112
Period size: 12 Copynumber: 5.3 Consensus size: 12
121977851 AAAAAAAAAA
121977861 TTTTGTATATTT
1 TTTTGTATATTT
121977873 TTTTGTATA-TT
1 TTTTGTATATTT
121977884 TTTTGTATATTT
1 TTTTGTATATTT
121977896 TTTTGTATATTT
1 TTTTGTATATTT
121977908 TTTTGTATATATT
1 TTTTGTATAT-TT
121977921 TTTT
1 TTTT
121977925 ATGTTTTAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.22
12 33 0.66
13 6 0.12
ACGTcount: A:0.17, C:0.00, G:0.08, T:0.75
Consensus pattern (12 bp):
TTTTGTATATTT
Found at i:121977888 original size:23 final size:24
Alignment explanation
Indices: 121977861--121977924 Score: 112
Period size: 23 Copynumber: 2.7 Consensus size: 24
121977851 AAAAAAAAAA
121977861 TTTTGTATATTTTTTTGTATA-TT
1 TTTTGTATATTTTTTTGTATATTT
121977884 TTTTGTATATTTTTTTGTATATTT
1 TTTTGTATATTTTTTTGTATATTT
121977908 TTTTGTATATATTTTTT
1 TTTTGTATAT-TTTTTT
121977925 ATGTTTTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
23 21 0.54
24 12 0.31
25 6 0.15
ACGTcount: A:0.17, C:0.00, G:0.08, T:0.75
Consensus pattern (24 bp):
TTTTGTATATTTTTTTGTATATTT
Found at i:121977903 original size:35 final size:35
Alignment explanation
Indices: 121977861--121977931 Score: 117
Period size: 35 Copynumber: 2.0 Consensus size: 35
121977851 AAAAAAAAAA
121977861 TTTTGTATATTTTTTTGTATAT-TTTTTGTATATTT
1 TTTTGTATATTTTTTTGTATATATTTTT-TATATTT
*
121977896 TTTTGTATATTTTTTTGTATATATTTTTTATGTTT
1 TTTTGTATATTTTTTTGTATATATTTTTTATATTT
121977931 T
1 T
121977932 AATATATATA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
35 29 0.85
36 5 0.15
ACGTcount: A:0.17, C:0.00, G:0.08, T:0.75
Consensus pattern (35 bp):
TTTTGTATATTTTTTTGTATATATTTTTTATATTT
Found at i:121977940 original size:35 final size:35
Alignment explanation
Indices: 121977866--121977940 Score: 98
Period size: 35 Copynumber: 2.1 Consensus size: 35
121977856 AAAAATTTTG
** *
121977866 TATATTTTTTTGTATATTTTTTGTATATTTTTTTG
1 TATATTTTTTTGTATATTTTTTGTATATTTTAATA
*
121977901 TATATTTTTTTGTATATATTTTT-TATGTTTTAATA
1 TATATTTTTTTGTATAT-TTTTTGTATATTTTAATA
121977936 TATAT
1 TATAT
121977941 AGGTTAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 30 0.86
36 5 0.14
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.71
Consensus pattern (35 bp):
TATATTTTTTTGTATATTTTTTGTATATTTTAATA
Found at i:121978336 original size:35 final size:34
Alignment explanation
Indices: 121978283--121978361 Score: 122
Period size: 35 Copynumber: 2.3 Consensus size: 34
121978273 GTAGGTGCGG
* *
121978283 TGGGAGTGTGTGATGGTGCTGGTGGCAGACAGCA
1 TGGGAGAGTGGGATGGTGCTGGTGGCAGACAGCA
121978317 TGGGAGAGTGGGAGTGGTGCTGGTGGCAGACAGCA
1 TGGGAGAGTGGGA-TGGTGCTGGTGGCAGACAGCA
*
121978352 TGGAAGAGTG
1 TGGGAGAGTG
121978362 AGAAGAGGCA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
34 11 0.27
35 30 0.73
ACGTcount: A:0.20, C:0.10, G:0.49, T:0.20
Consensus pattern (34 bp):
TGGGAGAGTGGGATGGTGCTGGTGGCAGACAGCA
Found at i:121979049 original size:63 final size:62
Alignment explanation
Indices: 121978965--121979302 Score: 258
Period size: 63 Copynumber: 5.7 Consensus size: 62
121978955 GCTCAACTCA
* *
121978965 CTCAGTGTGTCCCGAAGCTCAACTCACTTCTCGCAATATGAGTCAATTTAAAACTAAAAATAC
1 CTCAGCGTG-CCCGAGGCTCAACTCACTTCTCGCAATATGAGTCAATTTAAAACTAAAAATAC
* *
121979028 CTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAA-TAAAAATA
1 CTCAGCGTG-CCCGAGGCTCAACTCACTTCTCGCAATATGAG-TCAATTT-AA-AACTAAAAATA
121979092 -
62 C
** *
121979092 ---A-------AAAGGCTTAACTCACCTT-TCGCAATATGAGTCAATTTAAAACTAAAAATAC
1 CTCAGCGTGCCCGAGGCTCAACTCA-CTTCTCGCAATATGAGTCAATTTAAAACTAAAAATAC
* *
121979144 CTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAAC-AAAAATA
1 CTCAGCGTG-CCCGAGGCTCAACTCACTTCTCGCAATATGAG-TCAATTT-AA-AACTAAAAATA
121979208 -
62 C
** * *
121979208 ---A-------AAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACTAAAAATAC
1 CTCAGCGTGCCCGAGGCTCAACTCACTTCTCGCAATATGAGTCAATTTAAAACTAAAAATAC
** *
121979260 CTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 CTCAGCGTG-CCCGAGGCTCAACTCACTTCTCGCAATATGAGT
121979303 TGATTTTGAC
Statistics
Matches: 217, Mismatches: 24, Indels: 68
0.70 0.08 0.22
Matches are distributed among these distances:
50 5 0.02
51 19 0.09
52 10 0.05
53 49 0.23
54 3 0.01
55 2 0.01
61 2 0.01
62 3 0.01
63 90 0.41
64 10 0.05
65 19 0.09
66 5 0.02
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (62 bp):
CTCAGCGTGCCCGAGGCTCAACTCACTTCTCGCAATATGAGTCAATTTAAAACTAAAAATAC
Found at i:121979122 original size:53 final size:53
Alignment explanation
Indices: 121979042--121979239 Score: 170
Period size: 53 Copynumber: 3.5 Consensus size: 53
121979032 GCGTGCCCCG
121979042 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAATAAAAATAAAA
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAATAAAAATAAAA
* * *
121979095 AGGCTTAACTCACCTT-TCGCAATATGAG-TCAATTT-AA-AACTAAAAATACCTCAGCGTGCCC
1 AGGCTCAACTCA-CTTCTCGCAATATGAGTTGATTTTGAACAA-TAAAAATA----A--------
**
121979156 CG
52 AA
*
121979158 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAA
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAATAAAAATAAAA
* *
121979211 AGGCTTAACTCACCTCTCGCAATATGAGT
1 AGGCTCAACTCACTTCTCGCAATATGAGT
121979240 CAATTTAAAA
Statistics
Matches: 114, Mismatches: 13, Indels: 36
0.70 0.08 0.22
Matches are distributed among these distances:
50 2 0.02
51 10 0.09
52 5 0.04
53 50 0.44
54 3 0.03
55 1 0.01
61 1 0.01
62 3 0.03
63 23 0.20
64 5 0.04
65 9 0.08
66 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (53 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAATAAAAATAAAA
Found at i:121979189 original size:116 final size:116
Alignment explanation
Indices: 121978985--121979311 Score: 584
Period size: 116 Copynumber: 2.8 Consensus size: 116
121978975 CCCGAAGCTC
121978985 AACTCA-CTTCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCA
1 AACTCACCTT-TCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCA
*
121979049 ACTCACTTCTCGCAATATGAGTTGATTTTGAACAATAAAAATAAAAAGGCTT
65 ACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAAAGGCTT
121979101 AACTCACCTTTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAA
1 AACTCACCTTTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAA
121979166 CTCACTTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAAAGGCTT
66 CTCACTTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAAAGGCTT
* * **
121979217 AACTCACCTCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGTCTTGAGGCTCAA
1 AACTCACCTTTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAA
*
121979282 CTCACCTCTCGCAATATGAGTTGATTTTGA
66 CTCACTTCTCGCAATATGAGTTGATTTTGA
121979312 CGAACAGAAA
Statistics
Matches: 204, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
116 201 0.99
117 3 0.01
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.27
Consensus pattern (116 bp):
AACTCACCTTTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAA
CTCACTTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAAAGGCTT
Found at i:121979331 original size:14 final size:14
Alignment explanation
Indices: 121979314--121979342 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
121979304 GATTTTGACG
121979314 AACAGAAATTGAAA
1 AACAGAAATTGAAA
121979328 AACAGAAATTGAAA
1 AACAGAAATTGAAA
121979342 A
1 A
121979343 TACCTCAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:121979495 original size:14 final size:14
Alignment explanation
Indices: 121979478--121979506 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
121979468 GATCTTGACG
121979478 AACAGAAATTGAAA
1 AACAGAAATTGAAA
121979492 AACAGAAATTGAAA
1 AACAGAAATTGAAA
121979506 A
1 A
121979507 TACCTCAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:121979620 original size:76 final size:77
Alignment explanation
Indices: 121979328--121979656 Score: 218
Period size: 76 Copynumber: 4.2 Consensus size: 77
121979318 GAAATTGAAA
* * *
121979328 AACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAATACCTCA-CACGTGACCTGAGACTCAACTCACCTCTCGCAATATGAGTTA
121979393 ATTTTTTTTGATG
65 ATTTTTTTTGATG
* * *
121979406 AACAGAAATT-AAAATTACCTCA-ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AACAGAAATTGAAAA-TACCTCACACGTGACCTGAGACTCAACTCACCTCTCGCAATATGAGTTA
* *
121979469 A----TCTTGACG
65 ATTTTTTTTGATG
* * * * * *
121979478 AACAGAAATTGAAAA-ACAGAAATTGAAAATACCTCAGCGCGTGAG-CTGAGACTCAACTCACCT
1 AACAGAAATTGAAAATAC-----CT---CACACGTGA-C-C-TGAGACTCA-A--C---TCACCT
*
121979541 CTCGCAATATGAGTTGATTTTTTTTGATG
49 CTCGCAATATGAGTTAATTTTTTTTGATG
* *
121979570 AACAGAAATT-AAAATTACCTCA-ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAA-TACCTCACACGTGACCTGAGACTCAACTCACCTCTCGCAATATGAGTTA
*
121979633 A----TTTTGACG
65 ATTTTTTTTGATG
121979642 AACAGAAATTGAAAA
1 AACAGAAATTGAAAA
121979657 ACAGAAATTG
Statistics
Matches: 201, Mismatches: 22, Indels: 61
0.71 0.08 0.21
Matches are distributed among these distances:
71 2 0.01
72 33 0.16
73 8 0.04
76 61 0.30
77 4 0.02
78 17 0.08
79 2 0.01
80 3 0.01
81 6 0.03
82 8 0.04
83 6 0.03
84 3 0.01
85 2 0.01
88 24 0.12
91 4 0.02
92 16 0.08
93 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (77 bp):
AACAGAAATTGAAAATACCTCACACGTGACCTGAGACTCAACTCACCTCTCGCAATATGAGTTAA
TTTTTTTTGATG
Found at i:121979659 original size:14 final size:14
Alignment explanation
Indices: 121979642--121979670 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
121979632 AATTTTGACG
121979642 AACAGAAATTGAAA
1 AACAGAAATTGAAA
121979656 AACAGAAATTGAAA
1 AACAGAAATTGAAA
121979670 A
1 A
121979671 TACCTCAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:121979816 original size:163 final size:164
Alignment explanation
Indices: 121979251--121979886 Score: 1139
Period size: 164 Copynumber: 3.9 Consensus size: 164
121979241 AATTTAAAAC
* * *
121979251 TAAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAA
1 TAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAA
*
121979316 CAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGGCTCAACTCACCTCTCG
66 CAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCG
*
121979381 CAATATGAGTTAATTTTTTTTGATGAACAGAAAT
131 CAATATGAGTTGATTTTTTTTGATGAACAGAAAT
*
121979415 TAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTGACGAA
1 TAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAA
121979480 CAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCG
66 CAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCG
121979545 CAATATGAGTTGATTTTTTTTGATGAACAGAAAT
131 CAATATGAGTTGATTTTTTTTGATGAACAGAAAT
*
121979579 TAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTGACGAA
1 TAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAA
121979644 CAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCG
66 CAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCG
*
121979709 CAATATAAGTTGA-TTTTTTTGATGAACAGAAAT
131 CAATATGAGTTGATTTTTTTTGATGAACAGAAAT
* *
121979742 TAAAATTACCTCAATGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAA
1 TAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAA
* * * *
121979807 CAGAAATTGAAAAACAGAAATTGAAAATACCTTAGCGCGTGAGCTAAGGCTCAACTCACTTCTCG
66 CAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCG
121979872 CAATATGAGTTGATT
131 CAATATGAGTTGATT
121979887 CTTTGGTAGA
Statistics
Matches: 454, Mismatches: 17, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
163 155 0.34
164 299 0.66
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (164 bp):
TAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAA
CAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTTTGATGAACAGAAAT
Found at i:121979822 original size:14 final size:14
Alignment explanation
Indices: 121979805--121979833 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
121979795 GATTTTGACG
121979805 AACAGAAATTGAAA
1 AACAGAAATTGAAA
121979819 AACAGAAATTGAAA
1 AACAGAAATTGAAA
121979833 A
1 A
121979834 TACCTTAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:121979862 original size:327 final size:328
Alignment explanation
Indices: 121979251--121979886 Score: 1139
Period size: 327 Copynumber: 1.9 Consensus size: 328
121979241 AATTTAAAAC
* * *
121979251 TAAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAA
1 TAAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTGACGAA
*
121979316 CAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGGCTCAACTCACCTCTCG
66 CAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCG
*
121979381 CAATATGAGTTAATTTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAA
131 CAATATAAGTTAATTTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAA
121979446 CTCACCTCTCGCAATATGAGTTGATCTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACC
196 CTCACCTCTCGCAATATGAGTTGATCTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACC
*
121979511 TCAGCGCGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGATGAACAGA
261 TCAGCGCGTGAGCTAAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGATGAACAGA
121979576 AAT
326 AAT
*
121979579 TAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTGACGAA
1 TAAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTGACGAA
121979644 CAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCG
66 CAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCG
* * *
121979709 CAATATAAGTTGA-TTTTTTTGATGAACAGAAATTAAAATTACCTCAATGTGTCCTGAGGTTCAA
131 CAATATAAGTTAATTTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAA
*
121979773 CTCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACC
196 CTCACCTCTCGCAATATGAGTTGATCTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACC
* * *
121979838 TTAGCGCGTGAGCTAAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
261 TCAGCGCGTGAGCTAAGACTCAACTCACCTCTCGCAATATGAGTTGATT
121979887 CTTTGGTAGA
Statistics
Matches: 294, Mismatches: 14, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
327 158 0.54
328 136 0.46
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (328 bp):
TAAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTGACGAA
CAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCG
CAATATAAGTTAATTTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAA
CTCACCTCTCGCAATATGAGTTGATCTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACC
TCAGCGCGTGAGCTAAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGATGAACAGA
AAT
Found at i:121980694 original size:38 final size:38
Alignment explanation
Indices: 121980652--121980726 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 38
121980642 TCATCCTAAT
121980652 CTTTTGTGTTAATCAAGACG-CCTTTTTCGGGTTTTCAC
1 CTTTT-TGTTAATCAAGACGCCCTTTTTCGGGTTTTCAC
* ** * *
121980690 CTTTTTTTTTTTTAAGATGCCCTTTTTCGGGTTTTCA
1 CTTTTTGTTAATCAAGACGCCCTTTTTCGGGTTTTCA
121980727 TCTTGATTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 9 0.29
38 22 0.71
ACGTcount: A:0.13, C:0.19, G:0.16, T:0.52
Consensus pattern (38 bp):
CTTTTTGTTAATCAAGACGCCCTTTTTCGGGTTTTCAC
Found at i:121984770 original size:13 final size:14
Alignment explanation
Indices: 121984754--121984789 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
121984744 CAATCTCATA
121984754 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
121984767 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
121984780 TCTC-ATTTCA
1 TCTCAATTTCA
121984790 TTCCAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:121984779 original size:18 final size:19
Alignment explanation
Indices: 121984741--121984781 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
121984731 TAGTTCATGT
121984741 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
121984760 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
121984778 TTTC
1 TTTC
121984782 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:121984969 original size:21 final size:21
Alignment explanation
Indices: 121984944--121985027 Score: 71
Period size: 21 Copynumber: 4.0 Consensus size: 21
121984934 CTGATAATAT
*
121984944 ACGACACATAAAGTGCCTAAA
1 ACGACACACAAAGTGCCTAAA
* * * *
121984965 ACGACACACGAGGTGCCTGAT
1 ACGACACACAAAGTGCCTAAA
* *
121984986 ACGACACACGAGGTG-CTGAAA
1 ACGACACACAAAGTGCCT-AAA
*
121985007 TACGACACATAAAGTGCCTAA
1 -ACGACACACAAAGTGCCTAA
121985028 TCAGTAAAGC
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
20 2 0.04
21 32 0.64
22 14 0.28
23 2 0.04
ACGTcount: A:0.39, C:0.25, G:0.21, T:0.14
Consensus pattern (21 bp):
ACGACACACAAAGTGCCTAAA
Found at i:121985012 original size:22 final size:21
Alignment explanation
Indices: 121984942--121985015 Score: 78
Period size: 21 Copynumber: 3.5 Consensus size: 21
121984932 ACCTGATAAT
** * *
121984942 ATACGACACATAAAGTGCCTA
1 ATACGACACACGAGGTGCCTG
*
121984963 AAACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
121984984 ATACGACACACGAGGTG-CTG
1 ATACGACACACGAGGTGCCTG
121985004 AAATACGACACA
1 --ATACGACACA
121985016 TAAAGTGCCT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
20 3 0.07
21 32 0.71
22 10 0.22
ACGTcount: A:0.39, C:0.26, G:0.22, T:0.14
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:121985337 original size:15 final size:15
Alignment explanation
Indices: 121985312--121985369 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
121985302 TCATATATAT
121985312 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
*
121985328 TATAAATTCAATTAA
1 TATAAATTCAATCAA
* *
121985343 AATAATTTCAATCAA
1 TATAAATTCAATCAA
121985358 TATAAATTCAAT
1 TATAAATTCAAT
121985370 AAAACAGATA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
15 32 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:121985354 original size:30 final size:28
Alignment explanation
Indices: 121985315--121985373 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
121985305 TATATATTAT
121985315 ATAATTCAATCAATATAAATTCAATTAAA
1 ATAATTCAATCAATATAAATTCAA-TAAA
121985344 ATAATTTCAATCAATATAAATTCAATAAA
1 ATAA-TTCAATCAATATAAATTCAATAAA
121985373 A
1 A
121985374 CAGATATTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 9 0.31
30 20 0.69
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (28 bp):
ATAATTCAATCAATATAAATTCAATAAA
Found at i:121985532 original size:2 final size:2
Alignment explanation
Indices: 121985525--121985574 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
121985515 ATATCTCATT
*
121985525 CA CA CA CA CA CA CA CA CA CA TA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
121985567 CA CA CA CA
1 CA CA CA CA
121985575 TATATATATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.48, G:0.00, T:0.02
Consensus pattern (2 bp):
CA
Found at i:121985579 original size:2 final size:2
Alignment explanation
Indices: 121985574--121985607 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
121985564 ACACACACAC
121985574 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121985608 TTAAATTCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121992726 original size:30 final size:29
Alignment explanation
Indices: 121992691--121992764 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
121992681 CTTCGAGCTC
* *
121992691 GCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACCCAGTGCCATA-TATTTCCAGCAT
**
121992721 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
121992750 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
121992765 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 26 0.65
30 14 0.35
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.28
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:121993967 original size:20 final size:20
Alignment explanation
Indices: 121993926--121993978 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
121993916 AATGAACACT
*
121993926 TTTTTTTTC-TTT-TCTTTG
1 TTTTTCTTCATTTCTCTTTG
121993944 TTTTTCTTCATATTCTCTTT-
1 TTTTTCTTCAT-TTCTCTTTG
*
121993964 TTTTTTTTCATTTCT
1 TTTTTCTTCATTTCT
121993979 TTATTCTTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 8 0.27
19 5 0.17
20 12 0.40
21 5 0.17
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTTCTTCATTTCTCTTTG
Found at i:121998886 original size:2 final size:2
Alignment explanation
Indices: 121998879--121998903 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
121998869 GGTACTAAGA
121998879 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
121998904 AATAATAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:121998936 original size:33 final size:30
Alignment explanation
Indices: 121998889--121998958 Score: 86
Period size: 33 Copynumber: 2.2 Consensus size: 30
121998879 ATATATATAT
*
121998889 ATATATATATATATAAATAATAGTATTAGAA
1 ATATATATATATATAAATAATAATATTA-AA
* *
121998920 ATCATATAGTATATATAACTGATAATATTAAA
1 AT-ATATA-TATATATAAATAATAATATTAAA
121998952 ATATATA
1 ATATATA
121998959 CATAATATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 7 0.21
32 9 0.26
33 18 0.53
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.39
Consensus pattern (30 bp):
ATATATATATATATAAATAATAATATTAAA
Found at i:121999183 original size:3 final size:3
Alignment explanation
Indices: 121999175--121999405 Score: 134
Period size: 3 Copynumber: 74.0 Consensus size: 3
121999165 ACAAGGATAT
121999175 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * ** * * *
121999223 ATA ATA TTGA A-A CACA A-A AGCC ATT ATA ATA AAA ATA TTA A-A ATA
1 ATA ATA AT-A ATA -ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
121999268 A-A GTA ATA GA-A ACA TTA CTA CAT- ATA TATA TATA CATA CATGA AGA
1 ATA ATA ATA -ATA ATA ATA ATA -ATA ATA -ATA -ATA -ATA -AT-A ATA
* * *
121999314 TATA CACTA AT- GTA TTTCA ATA ACA AATA ATA ATA ATA ATA ATA ATA
1 -ATA -A-TA ATA ATA -AT-A ATA ATA -ATA ATA ATA ATA ATA ATA ATA
121999361 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
121999406 TTGAAATGCA
Statistics
Matches: 184, Mismatches: 25, Indels: 38
0.74 0.10 0.15
Matches are distributed among these distances:
2 10 0.05
3 143 0.78
4 27 0.15
5 4 0.02
ACGTcount: A:0.60, C:0.06, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:121999899 original size:11 final size:12
Alignment explanation
Indices: 121999883--121999918 Score: 58
Period size: 11 Copynumber: 3.2 Consensus size: 12
121999873 AAAGAAAAAA
121999883 GAAGAGAG-AGG
1 GAAGAGAGAAGG
121999894 GAAGAGAGAAGG
1 GAAGAGAGAAGG
121999906 G-AGAGAGAAGG
1 GAAGAGAGAAGG
121999917 GA
1 GA
121999919 GGGGAATCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:122000034 original size:12 final size:12
Alignment explanation
Indices: 122000019--122000054 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
122000009 AAAAAAAAAA
122000019 TTTGTATATTTT
1 TTTGTATATTTT
122000031 TTTGTATATTTT
1 TTTGTATATTTT
*
122000043 TTTGTATGTTTT
1 TTTGTATATTTT
122000055 AATATATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.14, C:0.00, G:0.11, T:0.75
Consensus pattern (12 bp):
TTTGTATATTTT
Found at i:122000458 original size:35 final size:34
Alignment explanation
Indices: 122000403--122000485 Score: 139
Period size: 35 Copynumber: 2.4 Consensus size: 34
122000393 TGCAGGTGCG
* *
122000403 ATGGGAGTGTGTGATGGTGCTGGTGGCAGACAGC
1 ATGGGAGAGTGGGATGGTGCTGGTGGCAGACAGC
122000437 ATGGGAGAGTGGGAGTGGTGCTGGTGGCAGACAGC
1 ATGGGAGAGTGGGA-TGGTGCTGGTGGCAGACAGC
122000472 ATGGGAGAGTGGGA
1 ATGGGAGAGTGGGA
122000486 AGAGGCAAGT
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
34 12 0.26
35 34 0.74
ACGTcount: A:0.20, C:0.10, G:0.51, T:0.19
Consensus pattern (34 bp):
ATGGGAGAGTGGGATGGTGCTGGTGGCAGACAGC
Found at i:122002158 original size:15 final size:15
Alignment explanation
Indices: 122002114--122002164 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
122002104 TTAAATATAT
*
122002114 ATTA-ATGAAAATTC
1 ATTATATGAAAATTA
* *
122002128 ATTTTATAATAAATTA
1 ATTATATGA-AAATTA
122002144 ATTATATGAAAATTA
1 ATTATATGAAAATTA
*
122002159 AATATA
1 ATTATA
122002165 CATAATTTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
14 3 0.10
15 14 0.48
16 12 0.41
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (15 bp):
ATTATATGAAAATTA
Found at i:122002192 original size:16 final size:16
Alignment explanation
Indices: 122002158--122002191 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
122002148 TATGAAAATT
122002158 AAATATACATAATTTA
1 AAATATACATAATTTA
*
122002174 AAATATATAT-ATTTA
1 AAATATACATAATTTA
122002189 AAA
1 AAA
122002192 AATTAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATATACATAATTTA
Found at i:122006127 original size:2 final size:2
Alignment explanation
Indices: 122006120--122006149 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
122006110 TTGTAAGCTC
122006120 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
122006150 TATGTAAGTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122006191 original size:24 final size:27
Alignment explanation
Indices: 122006136--122006193 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 27
122006126 ATATATATAT
122006136 ATATATATATATATTATGTAAGTCCCAC
1 ATATATATATATATTA-GTAAGTCCCAC
122006164 ATATATA-ATATATCTA-TAAG-CCCA-
1 ATATATATATATAT-TAGTAAGTCCCAC
122006188 ATATAT
1 ATATAT
122006194 TAACCACATT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
24 6 0.21
25 4 0.14
26 4 0.14
27 6 0.21
28 9 0.31
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.38
Consensus pattern (27 bp):
ATATATATATATATTAGTAAGTCCCAC
Found at i:122010546 original size:18 final size:17
Alignment explanation
Indices: 122010516--122010552 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
122010506 TTTTAATGTG
*
122010516 TATTAAATTACATAATA
1 TATTAAATAACATAATA
122010533 TATTAAAATAACATAATA
1 TATT-AAATAACATAATA
122010551 TA
1 TA
122010553 AAATATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (17 bp):
TATTAAATAACATAATA
Found at i:122010774 original size:3 final size:3
Alignment explanation
Indices: 122010766--122010807 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
122010756 TAGTTTTGAG
122010766 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
122010808 GTTTAAAGCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:122012223 original size:11 final size:11
Alignment explanation
Indices: 122012209--122012253 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
122012199 AAATAATAGT
122012209 AAAATAGTAAA
1 AAAATAGTAAA
122012220 AAAATAG--AA
1 AAAATAGTAAA
122012229 AAAA-AGTAAA
1 AAAATAGTAAA
* *
122012239 AAAACAGCAAA
1 AAAATAGTAAA
122012250 AAAA
1 AAAA
122012254 AATGCAGTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
8 2 0.07
9 6 0.20
10 6 0.20
11 16 0.53
ACGTcount: A:0.78, C:0.04, G:0.09, T:0.09
Consensus pattern (11 bp):
AAAATAGTAAA
Found at i:122012231 original size:19 final size:19
Alignment explanation
Indices: 122012203--122012253 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
122012193 TAAGTGAAAT
* *
122012203 AATAGTAAAATAGTAAAAA
1 AATAGAAAAAAAGTAAAAA
122012222 AATAGAAAAAAAGTAAAAA
1 AATAGAAAAAAAGTAAAAA
*
122012241 AACAGCAAAAAAA
1 AATAG-AAAAAAA
122012254 AATGCAGTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 21 0.75
20 7 0.25
ACGTcount: A:0.75, C:0.04, G:0.10, T:0.12
Consensus pattern (19 bp):
AATAGAAAAAAAGTAAAAA
Found at i:122014217 original size:2 final size:2
Alignment explanation
Indices: 122014210--122014246 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
122014200 AACTATTGTA
122014210 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
122014247 ATAATTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:122020098 original size:22 final size:22
Alignment explanation
Indices: 122020073--122020115 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
122020063 TATCCGAACA
122020073 ATAATAGCAAAATAGTAGTAAT
1 ATAATAGCAAAATAGTAGTAAT
**
122020095 ATAATAGTGAAATAGTAGTAA
1 ATAATAGCAAAATAGTAGTAA
122020116 AACAACAACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.16, T:0.28
Consensus pattern (22 bp):
ATAATAGCAAAATAGTAGTAAT
Found at i:122021102 original size:29 final size:28
Alignment explanation
Indices: 122021060--122021115 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
122021050 ATGTGAAATT
* *
122021060 TAAATTTCAATATTCCTTTTTTTTAAAAC
1 TAAATTTCAATATT-ATTTTCTTTAAAAC
122021089 TAAATTT-AATTATTATTTTCTTTAAAA
1 TAAATTTCAA-TATTATTTTCTTTAAAA
122021116 GAGTTAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.54
Consensus pattern (28 bp):
TAAATTTCAATATTATTTTCTTTAAAAC
Found at i:122029905 original size:16 final size:15
Alignment explanation
Indices: 122029881--122029915 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
122029871 TTTGACATAT
122029881 AAAAAATATATATAA
1 AAAAAATATATATAA
*
122029896 GAAAACATATATATAA
1 -AAAAAATATATATAA
122029912 AAAA
1 AAAA
122029916 TTAGTTGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (15 bp):
AAAAAATATATATAA
Found at i:122034075 original size:13 final size:13
Alignment explanation
Indices: 122034059--122034100 Score: 59
Period size: 14 Copynumber: 3.2 Consensus size: 13
122034049 GAAACAGGGG
122034059 AAAGAAAGAAGAA
1 AAAGAAAGAAGAA
122034072 AAAGAAAGAAAGAA
1 AAAGAAAG-AAGAA
*
122034086 AAATAAAG-AGAA
1 AAAGAAAGAAGAA
122034098 AAA
1 AAA
122034101 TTAGGGTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 7 0.26
13 8 0.30
14 12 0.44
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (13 bp):
AAAGAAAGAAGAA
Found at i:122036288 original size:13 final size:14
Alignment explanation
Indices: 122036270--122036298 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
122036260 CCAATAACAG
122036270 ATACAGAA-ATCAA
1 ATACAGAATATCAA
122036283 ATACAGAATATCAA
1 ATACAGAATATCAA
122036297 AT
1 AT
122036299 TAATATGCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.21
Consensus pattern (14 bp):
ATACAGAATATCAA
Found at i:122040845 original size:17 final size:17
Alignment explanation
Indices: 122040823--122040855 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
122040813 GTATATTCAA
*
122040823 ATGGAATTGAAATTGAT
1 ATGGAAATGAAATTGAT
122040840 ATGGAAATGAAATTGA
1 ATGGAAATGAAATTGA
122040856 AATAAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.24, T:0.30
Consensus pattern (17 bp):
ATGGAAATGAAATTGAT
Found at i:122041071 original size:28 final size:28
Alignment explanation
Indices: 122041011--122041090 Score: 97
Period size: 28 Copynumber: 2.8 Consensus size: 28
122041001 CTGTGCTATT
* * *
122041011 CTGGTGTGTTTTAGATGGATTATATTATT
1 CTGGTGTGTTTTGGA-GGATTATATGATA
*
122041040 CTGGTGTGTTTGGGAGGATTATATGATA
1 CTGGTGTGTTTTGGAGGATTATATGATA
* *
122041068 CTGGTGTATTTTGGAAGATTATA
1 CTGGTGTGTTTTGGAGGATTATA
122041091 CTGGTGTGTT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 31 0.70
29 13 0.30
ACGTcount: A:0.23, C:0.04, G:0.29, T:0.45
Consensus pattern (28 bp):
CTGGTGTGTTTTGGAGGATTATATGATA
Found at i:122050536 original size:3 final size:3
Alignment explanation
Indices: 122050528--122050719 Score: 225
Period size: 3 Copynumber: 64.7 Consensus size: 3
122050518 TGCTTTTAAA
*
122050528 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
122050576 AAT AGT AAT AAT AAT GAT AAT AAT AAT -AT TAT AA- AAG AAT AA- AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
122050621 AAT AAT GAT ATT AAT ACAT AA- ATAT AAAT AGA- AAT -AT AAT AAT AAT
1 AAT AAT AAT AAT AAT A-AT AAT A-AT -AAT A-AT AAT AAT AAT AAT AAT
*
122050667 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
122050715 AAT AA
1 AAT AA
122050720 AAGTTTTAAA
Statistics
Matches: 164, Mismatches: 15, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
2 10 0.06
3 147 0.90
4 6 0.04
5 1 0.01
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:122050910 original size:17 final size:17
Alignment explanation
Indices: 122050890--122050957 Score: 55
Period size: 17 Copynumber: 3.7 Consensus size: 17
122050880 TAGTAATAGT
122050890 ATAAATATAAATAAAAA
1 ATAAATATAAATAAAAA
* * *
122050907 ATAAAAATAGATAAATA
1 ATAAATATAAATAAAAA
*
122050924 ATAATAGTTTTAGAATAACAAA
1 ATAA-A--TATA-AATAA-AAA
122050946 ATAAATATAAAT
1 ATAAATATAAAT
122050958 GGAAACATAA
Statistics
Matches: 38, Mismatches: 8, Indels: 9
0.69 0.15 0.16
Matches are distributed among these distances:
17 18 0.47
18 4 0.11
19 3 0.08
20 2 0.05
21 5 0.13
22 6 0.16
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.28
Consensus pattern (17 bp):
ATAAATATAAATAAAAA
Found at i:122051988 original size:44 final size:46
Alignment explanation
Indices: 122051891--122052005 Score: 137
Period size: 44 Copynumber: 2.6 Consensus size: 46
122051881 CTTCGATCTA
**
122051891 CTCCACTGCAACTTCAGGGAGATAA-AATCTGCTATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGAATCTGCTATCTTCAACCTG
* * *
122051936 CTCCACTGCAACTTTAGGGAGATAAGACT-TG-TATCTTGAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGAATCTGCTATCTTCAACCTG
* * *
122051980 CTCTACTGCAACCTCAGAGAGATAAG
1 CTCCACTGCAACTTCAGGGAGATAAG
122052006 GCTGGTGACT
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
44 32 0.53
45 26 0.43
46 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (46 bp):
CTCCACTGCAACTTCAGGGAGATAAGAATCTGCTATCTTCAACCTG
Found at i:122052025 original size:44 final size:44
Alignment explanation
Indices: 122051886--122052028 Score: 126
Period size: 44 Copynumber: 3.2 Consensus size: 44
122051876 TATAGCTTCG
* * * * * *
122051886 ATCTACTCCACTGCAACTTCAGGGAGATAAAATCTGCTATCTTCA
1 ATCTGCTCCACTGCAACCTCAGAGAGATAAGA-CTGGTATCTTAA
* * * * * *
122051931 GTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTATCTTGA
1 ATCTGCTCCACTGCAACCTCAGAGAGATAAGACTGGTATCTTAA
* * *
122051975 ACCTGCTCTACTGCAACCTCAGAGAGATAAGGCTGGTGA-CTTAA
1 ATCTGCTCCACTGCAACCTCAGAGAGATAAGACTGGT-ATCTTAA
122052019 ATCTGCTCCA
1 ATCTGCTCCA
122052029 TTGCCGCTAC
Statistics
Matches: 79, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
44 50 0.63
45 29 0.37
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACCTCAGAGAGATAAGACTGGTATCTTAA
Found at i:122052202 original size:177 final size:177
Alignment explanation
Indices: 122051951--122052282 Score: 560
Period size: 177 Copynumber: 1.9 Consensus size: 177
122051941 CTGCAACTTT
* *
122051951 AGGGAGATAAGACTTGTATCTTGAACCTGCTCTACTGCAACCTCAGAGAGATAAGGCTGGTGACT
1 AGGGAGATAAGACTTGTATCTTGAACCTACTCCACTGCAACCTCAGAGAGATAAGGCTGGTGACT
122052016 TAAATCTGCTCCATTGCCGCTACATGGAGAAAAGATTCATCGT-TTTCGATCTGCTCCACTACTG
66 TAAATCTGCTCCATTGCCGCTACATGGAGAAAAGATTCATCGTCTTT-GATCTGCTCCACTACTG
* *
122052080 TTTAGGGAGATAATATCTGTAATTTTCGGTCCGCTTCACTATAATTTC
130 CTTAGGGAGATAAGATCTGTAATTTTCGGTCCGCTTCACTATAATTTC
* *
122052128 AGGGAGATAAGACTTGTATCTTGAACCTACTCCACTGCAACTTCA-AGGAGATAAGGCTGGTGGC
1 AGGGAGATAAGACTTGTATCTTGAACCTACTCCACTGCAACCTCAGA-GAGATAAGGCTGGTGAC
* *
122052192 TTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTCGTCGTCTTTGATCTGCTCCACTACTG
65 TTAAATCTGCTCCATTGCCGCTACATGGAGAAAAGATTCATCGTCTTTGATCTGCTCCACTACTG
122052257 CTTAGGGAGATAAGATCTGTAATTTT
130 CTTAGGGAGATAAGATCTGTAATTTT
122052283 TAGCCCGTTC
Statistics
Matches: 145, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
176 1 0.01
177 141 0.97
178 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (177 bp):
AGGGAGATAAGACTTGTATCTTGAACCTACTCCACTGCAACCTCAGAGAGATAAGGCTGGTGACT
TAAATCTGCTCCATTGCCGCTACATGGAGAAAAGATTCATCGTCTTTGATCTGCTCCACTACTGC
TTAGGGAGATAAGATCTGTAATTTTCGGTCCGCTTCACTATAATTTC
Found at i:122052266 original size:44 final size:44
Alignment explanation
Indices: 122052218--122052930 Score: 147
Period size: 44 Copynumber: 16.2 Consensus size: 44
122052208 GCCGCTACAT
*
122052218 GGAGATAAGATTCGTCGTCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAGATTCGTCGTCTTTAATCTGCTCCACTACTGCTTAG
** * ** * * *
122052262 GGAGATAAGA-TCTGTAATTTTTAGCCCGTTCCACTACTGCTTAC
1 GGAGATAAGATTC-GTCGTCTTTAATCTGCTCCACTACTGCTTAG
** ** * * * * * * *
122052306 GGAGATAAGGCTAAT-GGCTTAAATCTGCTCCATTGCCGCTACAT
1 GGAGATAAGATTCGTCGTCTTTAATCTGCTCCACTACTGCT-TAG
* * *
122052350 GGAGATAAGATTCTTCGTCTTTAATCTACTCCACTACTGCTTAA
1 GGAGATAAGATTCGTCGTCTTTAATCTGCTCCACTACTGCTTAG
* * * ** ** * *
122052394 GAAGATAATA-TCTATAAT-TTTCAGCCCGTTCCACTACTGCTTAG
1 GGAGATAAGATTC-GTCGTCTTT-AATCTGCTCCACTACTGCTTAG
* * * * * * * * *
122052438 GGAGATAA-AGCTAG-CGGCTTAAATCTGCTCCATTGCCGCTACAT
1 GGAGATAAGA-TTCGTCGTCTTTAATCTGCTCCACTACTGCT-TAG
* * *
122052482 GGAGATAAGATTCGCCGTCTTCAATCTACTCCACTACTGCTTAG
1 GGAGATAAGATTCGTCGTCTTTAATCTGCTCCACTACTGCTTAG
* ** * *
122052526 GGAGATAAGA-TC-TGCAAT-TTTCAGCCCGTTCCACTACTGCTTAG
1 GGAGATAAGATTCGT-C-GTCTTT-AATCTGCTCCACTACTGCTTAG
* * * * * ** * *
122052570 GGAGATAAAACTAGT-GGCTTAAATCTGCTCCA-TTGTCGCTACAT
1 GGAGATAAGATTCGTCGTCTTTAATCTGCTCCACTACT-GCT-TAG
** * *
122052614 GGAGATAAGATTCG-CTGTCTTCGATTTGCTTCACTACTGCTTAG
1 GGAGATAAGATTCGTC-GTCTTTAATCTGCTCCACTACTGCTTAG
** * * * ** * * *
122052658 GGAGATAA-AAAC-TGCAATCATCAGCCCGTTCCACTACTACTTAG
1 GGAGATAAGATTCGT-C-GTCTTTAATCTGCTCCACTACTGCTTAG
* ** * * * * *
122052702 AGAGATAAG-GCCAGT-GGCTTAAATCTGCTCCATTGCTG-TTACAT
1 GGAGATAAGATTC-GTCGTCTTTAATCTGCTCCACTACTGCTT--AG
** * *
122052746 GGAGATAAGATTCACCGT-TTTCGATCTGCTCCACTACTGTTTAG
1 GGAGATAAGATTCGTCGTCTTT-AATCTGCTCCACTACTGCTTAG
* * ** * *
122052790 GGAGATAAGA-TC-TGCAATCTTCAGCCCGTTCCACTACTGCTTAG
1 GGAGATAAGATTCGT-C-GTCTTTAATCTGCTCCACTACTGCTTAG
** * * * * * * * *
122052834 GGAGATAAGGCTAGT-GGCTTAAATCTACTCCATTGCTGCTACAT
1 GGAGATAAGATTCGTCGTCTTTAATCTGCTCCACTACTGCT-TAG
** *
122052878 GGAGATAAGATTCG-CTGTCTTCGATCTGCTCTACTACTGCTTAG
1 GGAGATAAGATTCGTC-GTCTTTAATCTGCTCCACTACTGCTTAG
122052922 GGAGATAAG
1 GGAGATAAG
122052931 GCTAGTCGAA
Statistics
Matches: 446, Mismatches: 181, Indels: 84
0.63 0.25 0.12
Matches are distributed among these distances:
42 4 0.01
43 81 0.18
44 259 0.58
45 95 0.21
46 7 0.02
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (44 bp):
GGAGATAAGATTCGTCGTCTTTAATCTGCTCCACTACTGCTTAG
Found at i:122052310 original size:132 final size:131
Alignment explanation
Indices: 122052174--122052930 Score: 1100
Period size: 132 Copynumber: 5.7 Consensus size: 131
122052164 GCAACTTCAA
*
122052174 GGAGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTCGTCGTCTT
1 GGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTCG-CGTCTT
* * *
122052239 TGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTTAGCCCGTTCCACTACTGCTT
65 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGCCCGTTCCACTACTGCTT
*
122052304 AC
130 AG
* *
122052306 GGAGATAAGGCTAATGGCTTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTCTTCGTCTT
1 GGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTC-GCGTCTT
** * * * * **
122052371 TAATCTACTCCACTACTGCTTAAGAAGATAATATCTATAATTTTCAGCCCGTTCCACTACTGCTT
65 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGCCCGTTCCACTACTGCTT
122052436 AG
130 AG
* *
122052438 GGAGATAAAGCTAGCGGCTTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTCGCCGTCTT
1 GGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTCG-CGTCTT
* *
122052503 CAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGCCCGTTCCACTACTGCTT
65 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGCCCGTTCCACTACTGCTT
122052568 AG
130 AG
** *
122052570 GGAGATAAAACTAGTGGCTTAAATCTGCTCCATTGTCGCTACATGGAGATAAGATTCGCTGTCTT
1 GGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTCGC-GTCTT
* * * * ** *
122052635 CGATTTGCTTCACTACTGCTTAGGGAGATAAAAACTGCAATCATCAGCCCGTTCCACTACTACTT
65 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGCCCGTTCCACTACTGCTT
122052700 AG
130 AG
* * * * * *
122052702 AGAGATAAGGCCAGTGGCTTAAATCTGCTCCATTGCTGTTACATGGAGATAAGATTCACCGTTTT
1 GGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTC-GCGTCTT
* *
122052767 CGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGCAATCTTCAGCCCGTTCCACTACTGCTT
65 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGCCCGTTCCACTACTGCTT
122052832 AG
130 AG
* *
122052834 GGAGATAAGGCTAGTGGCTTAAATCTACTCCATTGCTGCTACATGGAGATAAGATTCGCTGTCTT
1 GGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTCGC-GTCTT
*
122052899 CGATCTGCTCTACTACTGCTTAGGGAGATAAG
65 CGATCTGCTCCACTACTGCTTAGGGAGATAAG
122052931 GCTAGTCGAA
Statistics
Matches: 563, Mismatches: 57, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
131 2 0.00
132 560 0.99
133 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (131 bp):
GGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGCTACATGGAGATAAGATTCGCGTCTTC
GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAGCCCGTTCCACTACTGCTTA
G
Found at i:122053793 original size:11 final size:10
Alignment explanation
Indices: 122053776--122053806 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
122053766 TGGTCCTCTC
122053776 CTTTTTTTTT
1 CTTTTTTTTT
122053786 CTTTTTTTTT
1 CTTTTTTTTT
122053796 CTTTTTTTTT
1 CTTTTTTTTT
122053806 C
1 C
122053807 AAAGCGCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:122054352 original size:15 final size:14
Alignment explanation
Indices: 122054334--122054402 Score: 66
Period size: 14 Copynumber: 4.9 Consensus size: 14
122054324 AATTTTTTTA
*
122054334 TTTTTGTTTTTGTT
1 TTTTTTTTTTTGTT
122054348 TTTTTTATTTTTGTT
1 TTTTTT-TTTTTGTT
* *
122054363 TTTGTTTTTTTCTT
1 TTTTTTTTTTTGTT
* *
122054377 TCTCTTTTTTTGTT
1 TTTTTTTTTTTGTT
* *
122054391 TCTTTCTTTTTG
1 TTTTTTTTTTTG
122054403 GCTGCCTTTG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
14 33 0.72
15 13 0.28
ACGTcount: A:0.01, C:0.07, G:0.09, T:0.83
Consensus pattern (14 bp):
TTTTTTTTTTTGTT
Found at i:122054352 original size:21 final size:21
Alignment explanation
Indices: 122054326--122054373 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
122054316 CCTTCCATAA
122054326 TTTTTTTATTTTTGTTTTTGT
1 TTTTTTTATTTTTGTTTTTGT
122054347 TTTTTTTATTTTTGTTTTTGT
1 TTTTTTTATTTTTGTTTTTGT
122054368 TTTTTT
1 TTTTTT
122054374 CTTTCTCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.04, C:0.00, G:0.08, T:0.88
Consensus pattern (21 bp):
TTTTTTTATTTTTGTTTTTGT
Found at i:122054386 original size:22 final size:21
Alignment explanation
Indices: 122054326--122054401 Score: 86
Period size: 21 Copynumber: 3.6 Consensus size: 21
122054316 CCTTCCATAA
*
122054326 TTTTTTT-ATTTTTGTTTTTG
1 TTTTTTTCTTTTTTGTTTTTG
122054346 TTTTTTT-TATTTTTGTTTTTG
1 TTTTTTTCT-TTTTTGTTTTTG
122054367 TTTTTTTCTTTCTCTT-TTTTTG
1 TTTTTTTCTTT-T-TTGTTTTTG
*
122054389 TTTCTTTCTTTTT
1 TTTTTTTCTTTTT
122054402 GGCTGCCTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
20 8 0.16
21 22 0.44
22 18 0.36
23 2 0.04
ACGTcount: A:0.03, C:0.07, G:0.07, T:0.84
Consensus pattern (21 bp):
TTTTTTTCTTTTTTGTTTTTG
Found at i:122054394 original size:18 final size:16
Alignment explanation
Indices: 122054362--122054401 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 16
122054352 TTATTTTTGT
122054362 TTTTGTTTTTTTCTTTC
1 TTTT-TTTTTTTCTTTC
122054379 TCTTTTTTTGTTTCTTTC
1 T-TTTTTTT-TTTCTTTC
122054397 TTTTT
1 TTTTT
122054402 GGCTGCCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.00, C:0.12, G:0.05, T:0.82
Consensus pattern (16 bp):
TTTTTTTTTTTCTTTC
Found at i:122057253 original size:19 final size:19
Alignment explanation
Indices: 122057229--122057274 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
122057219 GTGAAAATCT
122057229 AATGCAAATG-ATGCAATG
1 AATGCAAATGCATGCAATG
*
122057247 CAATGCAAATGCATGGAATG
1 -AATGCAAATGCATGCAATG
122057267 AATGCAAA
1 AATGCAAA
122057275 AGAAAAAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.46, C:0.13, G:0.22, T:0.20
Consensus pattern (19 bp):
AATGCAAATGCATGCAATG
Found at i:122059204 original size:3 final size:3
Alignment explanation
Indices: 122059196--122059310 Score: 151
Period size: 3 Copynumber: 38.0 Consensus size: 3
122059186 AAATAGTCTA
122059196 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
122059244 AAT AAT AAT AAT AAT GAT AAT AAT AAT AAT GAT GAT GAT GAT AAT ATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
122059292 AAT -AT AAAT AAT AAGT AAT
1 AAT AAT -AAT AAT AA-T AAT
122059311 CTAATGCTTA
Statistics
Matches: 103, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.02
3 96 0.93
4 5 0.05
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:122059451 original size:4 final size:4
Alignment explanation
Indices: 122059442--122059471 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
122059432 AAAGTATTAA
*
122059442 AAAT AAAT AAAT AAAT AAAT AAAT ATAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
122059472 CAGAATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
AAAT
Found at i:122059618 original size:3 final size:3
Alignment explanation
Indices: 122059602--122059697 Score: 63
Period size: 3 Copynumber: 32.3 Consensus size: 3
122059592 GTTTTAAAAA
* * * * *
122059602 AAT AAT TAT AAAT AAT AAT AAT AAAT AAT AAT AGT ACT AAT AGT ACT
1 AAT AAT AAT -AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
122059649 AAT AAT GAT AAT AAT AAT -AT AA- AAG AAT AA- AAA AAT AAT GAT ATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
122059694 AAT A
1 AAT A
122059698 CGTAAATATA
Statistics
Matches: 72, Mismatches: 16, Indels: 10
0.73 0.16 0.10
Matches are distributed among these distances:
2 6 0.08
3 61 0.85
4 5 0.07
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:122059618 original size:13 final size:13
Alignment explanation
Indices: 122059602--122059687 Score: 63
Period size: 13 Copynumber: 6.7 Consensus size: 13
122059592 GTTTTAAAAA
*
122059602 AATAATTATAAAT
1 AATAATAATAAAT
122059615 AATAATAATAAAT
1 AATAATAATAAAT
*
122059628 AATAATAGTACTAAT
1 AATAATAATA--AAT
* *
122059643 AGTACTAAT-AAT
1 AATAATAATAAAT
*
122059655 GATAATAATAATAT
1 AATAATAATAA-AT
*
122059669 AA-AAGAATAAA-
1 AATAATAATAAAT
122059680 AA-AATAAT
1 AATAATAAT
122059688 GATATTAATA
Statistics
Matches: 58, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
11 7 0.12
12 10 0.17
13 29 0.50
14 3 0.05
15 9 0.16
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (13 bp):
AATAATAATAAAT
Found at i:122061048 original size:33 final size:33
Alignment explanation
Indices: 122061006--122061069 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
122060996 TTCGATAGGT
122061006 ACACTTGCCTTCATCGTGATAATAGTTAGTTGG
1 ACACTTGCCTTCATCGTGATAATAGTTAGTTGG
122061039 ACACTTGCCTTCATCGTGATAATAGTTAGTT
1 ACACTTGCCTTCATCGTGATAATAGTTAGTT
122061070 TCAAGAATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (33 bp):
ACACTTGCCTTCATCGTGATAATAGTTAGTTGG
Found at i:122068839 original size:12 final size:13
Alignment explanation
Indices: 122068803--122068840 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
122068793 AAATATTTGA
122068803 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
122068816 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
122068830 CTTG-TCTTAAT
1 CTTGTTCTTAAT
122068841 ATTCCAAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:122070871 original size:28 final size:28
Alignment explanation
Indices: 122070839--122070937 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
122070829 GCAATAAGCC
*
122070839 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
122070867 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
122070895 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
122070924 CGCACACTTAGTGC
1 CGCACACTTAGTGC
122070938 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:122078553 original size:28 final size:28
Alignment explanation
Indices: 122078521--122078619 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
122078511 GCAATAAGCC
*
122078521 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
122078549 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
122078577 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
122078606 CGCACACTTAGTGC
1 CGCACACTTAGTGC
122078620 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:122080190 original size:29 final size:31
Alignment explanation
Indices: 122080168--122080298 Score: 100
Period size: 29 Copynumber: 4.5 Consensus size: 31
122080158 AAATAATAAT
*
122080168 GAAA-ATAATATTAGTATATAAATAGAAATA
1 GAAATATAATAATAGTATATAAATAGAAATA
*
122080198 GAAATATAATAATAG--TATAAATATAAATA
1 GAAATATAATAATAGTATATAAATAGAAATA
*
122080227 GACAA-ATAATAAT--TAGATAAATA-ATAATA
1 GA-AATATAATAATAGTATATAAATAGA-AATA
* * * * *
122080256 GTATTAGAATAATA--AAATAAATATAAATA
1 GAAATATAATAATAGTATATAAATAGAAATA
*
122080285 GAAACATAATAATA
1 GAAATATAATAATA
122080299 ATAGCAATAA
Statistics
Matches: 82, Mismatches: 11, Indels: 17
0.75 0.10 0.15
Matches are distributed among these distances:
28 2 0.02
29 64 0.78
30 7 0.09
31 9 0.11
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.29
Consensus pattern (31 bp):
GAAATATAATAATAGTATATAAATAGAAATA
Found at i:122080238 original size:15 final size:15
Alignment explanation
Indices: 122080193--122080296 Score: 73
Period size: 15 Copynumber: 7.1 Consensus size: 15
122080183 ATATAAATAG
122080193 AAATAGA-AATATAAT
1 AAATAGATAA-ATAAT
122080208 -AATAGTATAAAT-AT
1 AAATAG-ATAAATAAT
*
122080222 AAATAGACAAATAAT
1 AAATAGATAAATAAT
*
122080237 AATTAGATAAATAAT
1 AAATAGATAAATAAT
122080252 -AATAGTATTAGAATAAT
1 AAATAG-A-TA-AATAAT
122080269 -AA-A-ATAAAT-AT
1 AAATAGATAAATAAT
122080280 AAATAGA-AACATAAT
1 AAATAGATAA-ATAAT
122080295 AA
1 AA
122080297 TAATAGCAAT
Statistics
Matches: 73, Mismatches: 4, Indels: 24
0.72 0.04 0.24
Matches are distributed among these distances:
11 2 0.03
12 5 0.07
13 5 0.07
14 20 0.27
15 28 0.38
16 5 0.07
17 8 0.11
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (15 bp):
AAATAGATAAATAAT
Found at i:122080248 original size:58 final size:58
Alignment explanation
Indices: 122080185--122080297 Score: 149
Period size: 58 Copynumber: 1.9 Consensus size: 58
122080175 ATATTAGTAT
* **
122080185 ATAAATAGA-AATAGAAATATAATAATAGTATAAATATAAATAGACAA-ATAATAATTAG
1 ATAAATA-ATAATAGAAATAGAATAATAAAATAAATATAAATAGA-AACATAATAATTAG
* *
122080243 ATAAATAATAATAGTATTAGAATAATAAAATAAATATAAATAGAAACATAATAAT
1 ATAAATAATAATAGAAATAGAATAATAAAATAAATATAAATAGAAACATAATAAT
122080298 AATAGCAATA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
57 3 0.06
58 45 0.94
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (58 bp):
ATAAATAATAATAGAAATAGAATAATAAAATAAATATAAATAGAAACATAATAATTAG
Found at i:122080307 original size:29 final size:29
Alignment explanation
Indices: 122080183--122080301 Score: 125
Period size: 29 Copynumber: 4.1 Consensus size: 29
122080173 TAATATTAGT
*
122080183 ATATAAATAGAAATAGAAATATAATAATA
1 ATATAAATATAAATAGAAATATAATAATA
* *
122080212 GTATAAATATAAATAGACAA-ATAATAATT
1 ATATAAATATAAATAGA-AATATAATAATA
* * * *
122080241 AGATAAATA-ATAATAGTATTAGAATAATA
1 ATATAAATATA-AATAGAAATATAATAATA
* *
122080270 AAATAAATATAAATAGAAACATAATAATA
1 ATATAAATATAAATAGAAATATAATAATA
122080299 ATA
1 ATA
122080302 GCAATAATAT
Statistics
Matches: 71, Mismatches: 15, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
28 2 0.03
29 66 0.93
30 3 0.04
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.29
Consensus pattern (29 bp):
ATATAAATATAAATAGAAATATAATAATA
Found at i:122091612 original size:25 final size:24
Alignment explanation
Indices: 122091579--122091686 Score: 91
Period size: 24 Copynumber: 4.6 Consensus size: 24
122091569 ATAAAAGATT
* *
122091579 TAAAATAAATATTATAAAAGCAATC
1 TAAAATAAATAATACAAAA-CAATC
* *
122091604 TAAAGTAAATAATACAAAACAATT
1 TAAAATAAATAATACAAAACAATC
* * *
122091628 TAAAATCATTAAT--AAAA-AGTC
1 TAAAATAAATAATACAAAACAATC
122091649 TAAAATAAATAATACGTAAAA-AAT-
1 TAAAATAAATAATAC--AAAACAATC
122091673 TAAAATAAATAATA
1 TAAAATAAATAATA
122091687 TACATAAAAT
Statistics
Matches: 67, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
21 13 0.19
22 4 0.06
24 28 0.42
25 22 0.33
ACGTcount: A:0.63, C:0.06, G:0.04, T:0.27
Consensus pattern (24 bp):
TAAAATAAATAATACAAAACAATC
Found at i:122091686 original size:45 final size:46
Alignment explanation
Indices: 122091576--122091686 Score: 120
Period size: 45 Copynumber: 2.4 Consensus size: 46
122091566 TACATAAAAG
*
122091576 ATTTAAAATAAATATTATAAAAGCAATCTAAAGTAAATAATACAAAACA
1 ATTTAAAATAAATA--ATAAAA-CAATCTAAAATAAATAATACAAAACA
* * *
122091625 ATTTAAAATCATTAATAAAA-AGTCTAAAATAAATAATACGTAAAA-A
1 ATTTAAAATAAATAATAAAACAATCTAAAATAAATAATAC--AAAACA
122091671 A-TTAAAATAAATAATA
1 ATTTAAAATAAATAATA
122091687 TACATAAAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
45 30 0.56
46 2 0.04
47 10 0.19
49 12 0.22
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.28
Consensus pattern (46 bp):
ATTTAAAATAAATAATAAAACAATCTAAAATAAATAATACAAAACA
Found at i:122091701 original size:24 final size:23
Alignment explanation
Indices: 122091650--122091701 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
122091640 TAAAAAGTCT
*
122091650 AAAATAAATAATACGTAAAAAATT
1 AAAATAAATAATAC-TAAAAAATA
122091674 AAAATAAATAATA-TACATAAAATA
1 AAAATAAATAATACTA-A-AAAATA
122091698 AAAA
1 AAAA
122091702 CAGTTTAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 2 0.08
23 1 0.04
24 22 0.88
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.23
Consensus pattern (23 bp):
AAAATAAATAATACTAAAAAATA
Found at i:122091990 original size:25 final size:25
Alignment explanation
Indices: 122091849--122092202 Score: 167
Period size: 26 Copynumber: 14.0 Consensus size: 25
122091839 AATAGTTCAA
*
122091849 AAATAATATATAAAAAGAATTTAAGAT
1 AAATAATATAT-AAAA-AATTTAAAAT
* *
122091876 AAATAA-ATAAAAAACAATGTGAAGTAAT
1 AAATAATATATAAAA-AAT-TTAA--AAT
* *
122091904 TAAT-ATATATAAAATAATTCAAAAT
1 AAATAATATATAAAA-AATTTAAAAT
* *
122091929 GACAT-GTAT-TAAAAAACAGTTTAAAAT
1 -AAATAATATAT-AAAAA-A-TTTAAAAT
* *
122091956 AAATATTATATAAAAAATTTAAAGT
1 AAATAATATATAAAAAATTTAAAAT
* * *
122091981 AAGTAATATATAAAATAGTTAAAAAT
1 AAATAATATATAAAA-AATTTAAAAT
* *
122092007 AACA-AA-A-A-AATATATTTAAAAT
1 AA-ATAATATATAAAAAATTTAAAAT
* ** * *
122092029 AAACAATGCA-AAACAGTTTAAAAT
1 AAATAATATATAAAAAATTTAAAAT
* **
122092053 AACT-A-ATATAAAAGGTTTAAAAT
1 AAATAATATATAAAAAATTTAAAAT
* *
122092076 AAATAATATATAAAATAGTTTAAACT
1 AAATAATATATAAAA-AATTTAAAAT
* ** *
122092102 ACATAATGCAT-ATAAATTTAAAAT
1 AAATAATATATAAAAAATTTAAAAT
* * *
122092126 ATATAATATGT-AAAAGTTTAAAAT
1 AAATAATATATAAAAAATTTAAAAT
* *
122092150 AAATAATGTATATAAAAACTTAAAAT
1 AAATAATATATA-AAAAATTTAAAAT
*
122092176 AAATAATATGTAAAATAATTTAAAAT
1 AAATAATATATAAAA-AATTTAAAAT
122092202 A
1 A
122092203 GTATATAATG
Statistics
Matches: 246, Mismatches: 59, Indels: 45
0.70 0.17 0.13
Matches are distributed among these distances:
21 1 0.00
22 12 0.05
23 19 0.08
24 49 0.20
25 46 0.19
26 78 0.32
27 25 0.10
28 16 0.07
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.31
Consensus pattern (25 bp):
AAATAATATATAAAAAATTTAAAAT
Found at i:122092080 original size:73 final size:73
Alignment explanation
Indices: 122092003--122092155 Score: 163
Period size: 73 Copynumber: 2.1 Consensus size: 73
122091993 AAATAGTTAA
122092003 AAATAACA-AAAAAATATATTTAAAATAAACAATGCA-A-AACAGTTTAAAATA-ACTAATA-TA
1 AAATAACATAAAAAATA-ATTTAAAATAAACAATGCATATAA-A-TTTAAAATATA-TAATAGTA
122092063 AAAGGTTTAAAAT
62 AAA-GTTTAAAAT
* * * * * *
122092076 AAATAATATATAAAATAGTTTAAACTACATAATGCATATAAATTTAAAATATATAATATGTAAAA
1 AAATAACATAAAAAATAATTTAAAATAAACAATGCATATAAATTTAAAATATATAATA-GTAAAA
122092141 GTTTAAAAT
65 GTTTAAAAT
122092150 AAATAA
1 AAATAA
122092156 TGTATATAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
73 36 0.53
74 25 0.37
75 7 0.10
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.30
Consensus pattern (73 bp):
AAATAACATAAAAAATAATTTAAAATAAACAATGCATATAAATTTAAAATATATAATAGTAAAAG
TTTAAAAT
Found at i:122092107 original size:26 final size:25
Alignment explanation
Indices: 122091941--122092202 Score: 177
Period size: 26 Copynumber: 10.6 Consensus size: 25
122091931 CATGTATTAA
*
122091941 AAAACAGTTTAAAATAAATATTATAT
1 AAAA-AGTTTAAAATAAATAATATAT
* * *
122091967 AAAAAATTTAAAGTAAGTAATATAT
1 AAAAAGTTTAAAATAAATAATATAT
*
122091992 AAAATAGTTAAAAATAACA-AA-A-A-
1 AAAA-AGTTTAAAATAA-ATAATATAT
* * **
122092015 AATATA-TTTAAAATAAACAATGCA-
1 AA-AAAGTTTAAAATAAATAATATAT
* *
122092039 AAACAGTTTAAAATAACT-A-ATAT
1 AAAAAGTTTAAAATAAATAATATAT
*
122092062 AAAAGGTTTAAAATAAATAATATAT
1 AAAAAGTTTAAAATAAATAATATAT
* * **
122092087 AAAATAGTTTAAACTACATAATGCAT
1 AAAA-AGTTTAAAATAAATAATATAT
* * *
122092113 ATAAA-TTTAAAATATATAATATGT
1 AAAAAGTTTAAAATAAATAATATAT
122092137 -AAAAGTTTAAAATAAATAATGTATAT
1 AAAAAGTTTAAAATAAATAA--TATAT
* *
122092163 AAAAA-CTTAAAATAAATAATATGT
1 AAAAAGTTTAAAATAAATAATATAT
*
122092187 AAAATAATTTAAAATA
1 AAAA-AGTTTAAAATA
122092203 GTATATAATG
Statistics
Matches: 183, Mismatches: 36, Indels: 34
0.72 0.14 0.13
Matches are distributed among these distances:
21 1 0.01
22 12 0.07
23 24 0.13
24 51 0.28
25 32 0.17
26 59 0.32
27 4 0.02
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (25 bp):
AAAAAGTTTAAAATAAATAATATAT
Found at i:122092125 original size:50 final size:51
Alignment explanation
Indices: 122091941--122092202 Score: 197
Period size: 50 Copynumber: 5.3 Consensus size: 51
122091931 CATGTATTAA
* * ** * * * *
122091941 AAAACAGTTTAAAATAAATATTATATAAAAAATTTAAAGTAAGTAATATAT
1 AAAATAGTTTAAAATAAATAATGCATATAAAATTTAAAATAAATAATATGT
* * * * * *
122091992 AAAATAGTTAAAAATAACA-AA--AAAAT-ATATTTAAAATAAA-CA-ATGC
1 AAAATAGTTTAAAATAA-ATAATGCATATAAAATTTAAAATAAATAATATGT
* * * *
122092038 AAAACAGTTTAAAATAACTAAT--ATA-AAAGGTTTAAAATAAATAATATAT
1 AAAATAGTTTAAAATAAATAATGCATATAAA-ATTTAAAATAAATAATATGT
* * *
122092087 AAAATAGTTTAAACTACATAATGCATAT-AAATTTAAAATATATAATATGT
1 AAAATAGTTTAAAATAAATAATGCATATAAAATTTAAAATAAATAATATGT
* *
122092137 -AAA-AGTTTAAAATAAATAATGTATATAAAAACTTAAAATAAATAATATGT
1 AAAATAGTTTAAAATAAATAATGCATAT-AAAATTTAAAATAAATAATATGT
*
122092187 AAAATAATTTAAAATA
1 AAAATAGTTTAAAATA
122092203 GTATATAATG
Statistics
Matches: 163, Mismatches: 34, Indels: 27
0.73 0.15 0.12
Matches are distributed among these distances:
46 22 0.13
47 12 0.07
48 32 0.20
49 25 0.15
50 37 0.23
51 24 0.15
52 11 0.07
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (51 bp):
AAAATAGTTTAAAATAAATAATGCATATAAAATTTAAAATAAATAATATGT
Found at i:122092131 original size:24 final size:24
Alignment explanation
Indices: 122092021--122092182 Score: 113
Period size: 24 Copynumber: 6.6 Consensus size: 24
122092011 AAAAAATATA
*
122092021 TTTAAAATAAACAATGCA-A-AACAG
1 TTTAAAATAAATAATG-ATATAA-AG
*
122092045 TTTAAAATAACTAAT-ATA-AAAGG
1 TTTAAAATAAATAATGATATAAA-G
122092068 TTTAAAATAAATAAT-ATATAAAATAG
1 TTTAAAATAAATAATGATAT--AA-AG
* *
122092094 TTTAAACTACATAATGCATATAAA-
1 TTTAAAATAAATAATG-ATATAAAG
* *
122092118 TTTAAAATATATAAT-ATGTAAAAG
1 TTTAAAATAAATAATGATAT-AAAG
*
122092142 TTTAAAATAAATAATGTATATAAAAA
1 TTTAAAATAAATAATG-ATAT-AAAG
*
122092168 CTTAAAATAAATAAT
1 TTTAAAATAAATAAT
122092183 ATGTAAAATA
Statistics
Matches: 114, Mismatches: 12, Indels: 22
0.77 0.08 0.15
Matches are distributed among these distances:
22 5 0.04
23 24 0.21
24 40 0.35
25 1 0.01
26 39 0.34
27 1 0.01
28 4 0.04
ACGTcount: A:0.57, C:0.05, G:0.06, T:0.32
Consensus pattern (24 bp):
TTTAAAATAAATAATGATATAAAG
Done.