Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 394 of 433
Found at i:122393761 original size:5 final size:5
Alignment explanation
Indices: 122393726--122393777 Score: 54
Period size: 5 Copynumber: 10.2 Consensus size: 5
122393716 AATTAATTAG
*
122393726 TAAAA TAAAA -ATAAA TAATA TAACAA TTAAAA T-AAA TAAAA TAAAA
1 TAAAA TAAAA TA-AAA TAAAA TAA-AA -TAAAA TAAAA TAAAA TAAAA
122393772 TAAAA T
1 TAAAA T
122393778 TGGGGTGATT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
4 5 0.12
5 28 0.70
6 4 0.10
7 3 0.08
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (5 bp):
TAAAA
Found at i:122394146 original size:30 final size:30
Alignment explanation
Indices: 122394101--122394158 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
122394091 ATGTGAGATC
* * *
122394101 CCACACTCCTGTGTGGCCAGGCCGTGTGCT
1 CCACACACCTATGTGGCCAGGCCATGTGCT
122394131 CCACACACCTATGTGGCCAGGCCATGTG
1 CCACACACCTATGTGGCCAGGCCATGTG
122394159 GGTCAAATAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.16, C:0.36, G:0.28, T:0.21
Consensus pattern (30 bp):
CCACACACCTATGTGGCCAGGCCATGTGCT
Found at i:122397485 original size:26 final size:26
Alignment explanation
Indices: 122397456--122397507 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
122397446 TCTTGATCCG
122397456 TAGAAATCCCTAACTTATGTTAATAT
1 TAGAAATCCCTAACTTATGTTAATAT
122397482 TAGAAATCCCTAACTTATGTTAATAT
1 TAGAAATCCCTAACTTATGTTAATAT
122397508 CTCTTTTGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (26 bp):
TAGAAATCCCTAACTTATGTTAATAT
Found at i:122398201 original size:30 final size:30
Alignment explanation
Indices: 122398165--122398225 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
122398155 CACGGGTTGG
* * *
122398165 CACATGGGTATGTGGCCTGCCCGTGTGGAT
1 CACATGGGCATGTGCCCAGCCCGTGTGGAT
* *
122398195 CACATGGGCGTGTGCCCAGTCCGTGTGGAT
1 CACATGGGCATGTGCCCAGCCCGTGTGGAT
122398225 C
1 C
122398226 CTGAAAACTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.13, C:0.26, G:0.36, T:0.25
Consensus pattern (30 bp):
CACATGGGCATGTGCCCAGCCCGTGTGGAT
Found at i:122413480 original size:24 final size:27
Alignment explanation
Indices: 122413430--122413481 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
122413420 TAATGTGATG
* *
122413430 AAAATGATTTAATTATATTTTTACAAA
1 AAAATGATTCAATTATATTTATACAAA
122413457 AAAAT-ATTCAATTA-ATTTAT-CAAA
1 AAAATGATTCAATTATATTTATACAAA
122413481 A
1 A
122413482 TATGATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 5 0.22
25 5 0.22
26 8 0.35
27 5 0.22
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (27 bp):
AAAATGATTCAATTATATTTATACAAA
Found at i:122420505 original size:16 final size:18
Alignment explanation
Indices: 122420478--122420510 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
122420468 TTAATTTAAA
122420478 TAAATCAATTTT-TCAAT
1 TAAATCAATTTTCTCAAT
122420495 TAAAT-AATTTTCTCAA
1 TAAATCAATTTTCTCAA
122420511 CTCAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (18 bp):
TAAATCAATTTTCTCAAT
Found at i:122422565 original size:40 final size:40
Alignment explanation
Indices: 122422507--122422590 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
122422497 TGACATATCG
*
122422507 GCTAAATATGGGACTTAGTGTGCGATTCG-GTATAGCTTCA
1 GCTAAATATGGCACTTAGTGTGCGATTCGAG-ATAGCTTCA
* * * *
122422547 GCTAAATTTGGCATTTAGTGTGCGATTTGAGATAGCTTCG
1 GCTAAATATGGCACTTAGTGTGCGATTCGAGATAGCTTCA
122422587 GCTA
1 GCTA
122422591 TGTACATCAC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
40 37 0.97
41 1 0.03
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.35
Consensus pattern (40 bp):
GCTAAATATGGCACTTAGTGTGCGATTCGAGATAGCTTCA
Found at i:122422653 original size:28 final size:28
Alignment explanation
Indices: 122422622--122422700 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
122422612 GACATCAAAT
*
122422622 ATGACACTTAGTGTGTGAAATATTGAGA
1 ATGACACTTAGTGTGCGAAATATTGAGA
* * *
122422650 ATGACACTTAGTATACGAGATATTGAGA
1 ATGACACTTAGTGTGCGAAATATTGAGA
*
122422678 ATGGCACTTAGTGTGCGAAATAT
1 ATGACACTTAGTGTGCGAAATAT
122422701 CGAATGACTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.35, C:0.10, G:0.24, T:0.30
Consensus pattern (28 bp):
ATGACACTTAGTGTGCGAAATATTGAGA
Found at i:122426371 original size:61 final size:58
Alignment explanation
Indices: 122426252--122426409 Score: 169
Period size: 61 Copynumber: 2.7 Consensus size: 58
122426242 AACGTCCTAT
* * * *
122426252 ATAATAATTAATTTAAATATATAAACAATTAATTC--AA-AAGAAGCAGTATTCTAAC
1 ATAATAATTAATTTAAACATATAAACAATTGATTCAAAAGAAGAAGAAGTATTCCAAC
* * *
122426307 ATAATAATCAACTTAAACATATAAACAATTGATTCAAAAGAAGAAGAAGTAGTTTTCCACC
1 ATAATAATTAATTTAAACATATAAACAATTGATTCAAAAGAAGAAGAAGTA---TTCCAAC
* * * *
122426368 ATAACAATTGATTTAAACATATAATCAATCGATTCAAAAGAA
1 ATAATAATTAATTTAAACATATAAACAATTGATTCAAAAGAA
122426410 ACAGTATTTT
Statistics
Matches: 84, Mismatches: 13, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
55 31 0.37
57 2 0.02
58 10 0.12
61 41 0.49
ACGTcount: A:0.51, C:0.12, G:0.08, T:0.29
Consensus pattern (58 bp):
ATAATAATTAATTTAAACATATAAACAATTGATTCAAAAGAAGAAGAAGTATTCCAAC
Found at i:122426430 original size:55 final size:55
Alignment explanation
Indices: 122426252--122426492 Score: 194
Period size: 55 Copynumber: 4.2 Consensus size: 55
122426242 AACGTCCTAT
* * * ** * *
122426252 ATAATAATTAATTTAAATATATAAACAATTAATTCAAAAGAAGCAGTATTCTAAC
1 ATAACAATCAATTTAAACATATAAACAATCGATTCAAAAGAAACAGTATTTTAAC
* * * * *
122426307 ATAATAATCAACTTAAACATATAAACAATTGATTCAAAAGAAGAAGAAGTAGTTTTCCACC
1 ATAACAATCAATTTAAACATATAAACAATCGATTCAAAAG-A-AA-CAGTA-TTTT--AAC
** *
122426368 ATAACAATTGATTTAAACATATAATCAATCGATTCAAAAGAAACAGTATTTTAAC
1 ATAACAATCAATTTAAACATATAAACAATCGATTCAAAAGAAACAGTATTTTAAC
* ** * * * * **
122426423 ATGACAATCGGTTTAAGCATAAAAACAATCGATTCAAAAGAAATAATATTCCAAC
1 ATAACAATCAATTTAAACATATAAACAATCGATTCAAAAGAAACAGTATTTTAAC
122426478 ATATAACAATCAATT
1 --ATAACAATCAATT
122426493 AAGTGCAACC
Statistics
Matches: 149, Mismatches: 29, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
55 83 0.56
56 1 0.01
57 15 0.10
58 8 0.05
59 5 0.03
60 1 0.01
61 36 0.24
ACGTcount: A:0.50, C:0.13, G:0.08, T:0.29
Consensus pattern (55 bp):
ATAACAATCAATTTAAACATATAAACAATCGATTCAAAAGAAACAGTATTTTAAC
Found at i:122427719 original size:2 final size:2
Alignment explanation
Indices: 122427712--122427746 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
122427702 TTGGGAGGGC
122427712 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
122427747 GGGAAATTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:122437827 original size:40 final size:40
Alignment explanation
Indices: 122437764--122437935 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 40
122437754 TAATGACTTA
*
122437764 TCGGCTAAAA-TGGCACTTAGTGTGCAGTTCGAAATAGCT
1 TCGGCTAAAAGTGGCACTTAGTGTGCAATTCGAAATAGCT
* * *
122437803 TCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAAGTGGCACTTAGTGTGCAATTCGAAATAGCT
* ** *
122437843 TCGGCTATATATATAAATGGCACTTAGTGTGCGGTTCGAAATAGTT
1 TCGGC----TA-A-AAGTGGCACTTAGTGTGCAATTCGAAATAGCT
* * *
122437889 TCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAAGTGGCACTTAGTGTGCAATTCGAAATAGCT
122437929 TCGGCTA
1 TCGGCTA
122437936 TATATATATA
Statistics
Matches: 108, Mismatches: 18, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
39 10 0.09
40 62 0.57
41 1 0.01
42 2 0.02
44 2 0.02
45 1 0.01
46 30 0.28
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (40 bp):
TCGGCTAAAAGTGGCACTTAGTGTGCAATTCGAAATAGCT
Found at i:122437916 original size:86 final size:86
Alignment explanation
Indices: 122437771--122437943 Score: 328
Period size: 86 Copynumber: 2.0 Consensus size: 86
122437761 TTATCGGCTA
122437771 AAATGGCACTTAGTGTGCAGTTCGAAATAGCTTCGGCTAAAAGTGGCACTTGGTGTGCAATTTGA
1 AAATGGCACTTAGTGTGCAGTTCGAAATAGCTTCGGCTAAAAGTGGCACTTGGTGTGCAATTTGA
122437836 GATAGCTTCGGCTATATATAT
66 GATAGCTTCGGCTATATATAT
* *
122437857 AAATGGCACTTAGTGTGCGGTTCGAAATAGTTTCGGCTAAAAGTGGCACTTGGTGTGCAATTTGA
1 AAATGGCACTTAGTGTGCAGTTCGAAATAGCTTCGGCTAAAAGTGGCACTTGGTGTGCAATTTGA
122437922 GATAGCTTCGGCTATATATAT
66 GATAGCTTCGGCTATATATAT
122437943 A
1 A
122437944 TATATATAAA
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (86 bp):
AAATGGCACTTAGTGTGCAGTTCGAAATAGCTTCGGCTAAAAGTGGCACTTGGTGTGCAATTTGA
GATAGCTTCGGCTATATATAT
Found at i:122445453 original size:35 final size:35
Alignment explanation
Indices: 122445366--122445732 Score: 427
Period size: 35 Copynumber: 10.5 Consensus size: 35
122445356 TCCTTATTGA
122445366 AATACCATACCTACATTTCACAACTCAGTATGGA-
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
* **
122445400 AATGCCATACCTACATTTCTTAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
* * *
122445435 AATACCATACCTATATTTCACGACTCGGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
* *
122445470 GATACCATACCTACGTTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
* * *
122445505 AATACCATACCTATATTTCTCAACTCGGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
* *
122445540 GATACCATACGTACATTTCACAACTC-GATATGGAT
1 AATACCATACCTACATTTCACAACTCAG-TATGGAT
* * *
122445575 GATACTATACCTACATTTCACAACTCGGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
* * * *
122445610 AATACCATACCTACGTTTCACATCTCGGTATGGTT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
* * * * * *
122445645 AATACCATACCTCCGTATCATAGCTCAGTATGGACG
1 AATACCATACCTACATTTCACAACTCAGTATGGA-T
**
122445681 ACGA-CATACCTACATTTCACAACTCAGTATGG-T
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
122445714 TATACCATACCTACATTTC
1 AATACCATACCTACATTTC
122445733 GCACTTTGCC
Statistics
Matches: 280, Mismatches: 48, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
33 1 0.00
34 46 0.16
35 230 0.82
36 3 0.01
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:122445548 original size:105 final size:105
Alignment explanation
Indices: 122445367--122445732 Score: 477
Period size: 105 Copynumber: 3.5 Consensus size: 105
122445357 CCTTATTGAA
* * *
122445367 ATACCATACCTACATTTCACAACTCAGTATGGA-AATGCCATACCTACATTTCTTAACTCAGTAT
1 ATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCTCAACTCGGTAT
* *
122445431 GGATAATACCATACCTATATTTCACGACTCGGTATGGATG
66 GGATAATACCATACCTACATTTCACAACTCGGTATGGATG
* *
122445471 ATACCATACCTACGTTTCACAACTCAGTATGGATAATACCATACCTATATTTCTCAACTCGGTAT
1 ATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCTCAACTCGGTAT
* * *
122445536 GGATGATACCATACGTACATTTCACAACTCGATATGGATG
66 GGATAATACCATACCTACATTTCACAACTCGGTATGGATG
* * * * *
122445576 ATACTATACCTACATTTCACAACTCGGTATGGATAATACCATACCTACGTTTCACATCTCGGTAT
1 ATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCTCAACTCGGTAT
* * * * * * * *
122445641 GGTTAATACCATACCTCCGTATCATAGCTCAGTATGGACG
66 GGATAATACCATACCTACATTTCACAACTCGGTATGGATG
* *
122445681 ACGA-CATACCTACATTTCACAACTCAGTATGG-TTATACCATACCTACATTTC
1 A-TACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTC
122445733 GCACTTTGCC
Statistics
Matches: 227, Mismatches: 33, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
104 50 0.22
105 176 0.78
106 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.31
Consensus pattern (105 bp):
ATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCTCAACTCGGTAT
GGATAATACCATACCTACATTTCACAACTCGGTATGGATG
Found at i:122460435 original size:55 final size:55
Alignment explanation
Indices: 122460344--122460452 Score: 132
Period size: 55 Copynumber: 2.0 Consensus size: 55
122460334 AATACGAGCG
* *
122460344 TTCGACACACCCGTGTCTAGAACCCGTGGCCAAACCTGTCAAA-TCAACACGGGCA
1 TTCGACACACCCGTGCCAAGAACCCGTGGCCAAACCTGTCAAACT-AACACGGGCA
* * * *
122460399 TTCGACACGCCCGTGCCAAGCAA-CCGTGGTCGAACCTGTTAAACTAACACGGGC
1 TTCGACACACCCGTGCCAAG-AACCCGTGGCCAAACCTGTCAAACTAACACGGGC
122460453 GTGGGCCTAC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
55 43 0.93
56 3 0.07
ACGTcount: A:0.28, C:0.34, G:0.22, T:0.17
Consensus pattern (55 bp):
TTCGACACACCCGTGCCAAGAACCCGTGGCCAAACCTGTCAAACTAACACGGGCA
Found at i:122467195 original size:9 final size:9
Alignment explanation
Indices: 122467181--122467210 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
122467171 AGGTGACCAT
122467181 AAAGGAGCG
1 AAAGGAGCG
122467190 AAAGGAGCG
1 AAAGGAGCG
122467199 AAAGGAGCG
1 AAAGGAGCG
122467208 AAA
1 AAA
122467211 AACGAGCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.50, C:0.10, G:0.40, T:0.00
Consensus pattern (9 bp):
AAAGGAGCG
Found at i:122468392 original size:5 final size:6
Alignment explanation
Indices: 122468376--122468417 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
122468366 TACTTTAGCC
*
122468376 ATTTTT ATTTTT ATTTTT A-TTTT ATTTTT -TGTTTT ACTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT AT-TTTT ATTTTT A
122468418 ATTTACTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
5 6 0.19
6 26 0.81
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (6 bp):
ATTTTT
Found at i:122468398 original size:17 final size:18
Alignment explanation
Indices: 122468378--122468417 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
122468368 CTTTAGCCAT
122468378 TTTTATTTTTAT-TTTTA-
1 TTTTATTTTT-TGTTTTAC
122468395 TTTTATTTTTTGTTTTAC
1 TTTTATTTTTTGTTTTAC
122468413 TTTTA
1 TTTTA
122468418 ATTTACTAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.05
17 15 0.71
18 5 0.24
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.80
Consensus pattern (18 bp):
TTTTATTTTTTGTTTTAC
Found at i:122468402 original size:23 final size:23
Alignment explanation
Indices: 122468376--122468422 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
122468366 TACTTTAGCC
* *
122468376 ATTTTTAT-TTTTATTTTTATTTT
1 ATTTTT-TGTTTTACTTTTAATTT
122468399 ATTTTTTGTTTTACTTTTAATTT
1 ATTTTTTGTTTTACTTTTAATTT
122468422 A
1 A
122468423 CTAACTTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 20 0.95
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (23 bp):
ATTTTTTGTTTTACTTTTAATTT
Found at i:122470833 original size:5 final size:5
Alignment explanation
Indices: 122470823--122470851 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
122470813 AATCACCCCA
122470823 ATTTT ATTTT ATTTT ATTTT ATTTT ATTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTT
122470852 ATTATTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
ATTTT
Found at i:122470932 original size:13 final size:13
Alignment explanation
Indices: 122470914--122470939 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
122470904 TTATACTTAT
122470914 ATTTTAATTTTTA
1 ATTTTAATTTTTA
122470927 ATTTTAATTTTTA
1 ATTTTAATTTTTA
122470940 TATACTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
ATTTTAATTTTTA
Found at i:122472103 original size:11 final size:11
Alignment explanation
Indices: 122472087--122472112 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
122472077 TATTGTTCTC
122472087 AAAAAAATGAA
1 AAAAAAATGAA
122472098 AAAAAAATGAA
1 AAAAAAATGAA
122472109 AAAA
1 AAAA
122472113 TATATTTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.08, T:0.08
Consensus pattern (11 bp):
AAAAAAATGAA
Found at i:122474549 original size:26 final size:26
Alignment explanation
Indices: 122474520--122474629 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
122474510 TGATACAAAT
122474520 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
122474546 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
122474572 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
122474598 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
122474624 TGATAA
1 TGATAA
122474630 GAATTTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:122477422 original size:2 final size:2
Alignment explanation
Indices: 122477415--122477476 Score: 124
Period size: 2 Copynumber: 31.0 Consensus size: 2
122477405 TTATGTTTGC
122477415 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
122477457 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
122477477 CAAATATTGA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122488982 original size:24 final size:24
Alignment explanation
Indices: 122488907--122488982 Score: 71
Period size: 24 Copynumber: 3.2 Consensus size: 24
122488897 GACGACTCCG
* ** *
122488907 AGGAAACCAAGTGTGGGAAATCCG
1 AGGAGACCAAGTGTGAAAAATCCA
* * * * *
122488931 AGCAGATCAGGTGTGAAATATCCC
1 AGGAGACCAAGTGTGAAAAATCCA
122488955 AGGAGACCAAGTGTGAAAAATCCA
1 AGGAGACCAAGTGTGAAAAATCCA
122488979 AGGA
1 AGGA
122488983 AAGATGAAAA
Statistics
Matches: 39, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.39, C:0.17, G:0.29, T:0.14
Consensus pattern (24 bp):
AGGAGACCAAGTGTGAAAAATCCA
Found at i:122492988 original size:22 final size:22
Alignment explanation
Indices: 122492960--122493001 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
122492950 ATTCCTTTTC
122492960 TCAAAAATTACAAGCAATACTA
1 TCAAAAATTACAAGCAATACTA
122492982 TCAAAAATTACAAGCAATAC
1 TCAAAAATTACAAGCAATAC
122493002 ATTGTTAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.55, C:0.19, G:0.05, T:0.21
Consensus pattern (22 bp):
TCAAAAATTACAAGCAATACTA
Found at i:122493626 original size:16 final size:15
Alignment explanation
Indices: 122493595--122493629 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
122493585 TGGATTAATA
122493595 ATTAATATTAATTAT
1 ATTAATATTAATTAT
*
122493610 ATTAATAATTTATTAT
1 ATTAAT-ATTAATTAT
122493626 ATTA
1 ATTA
122493630 TTAAGTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTAATATTAATTAT
Found at i:122495787 original size:16 final size:14
Alignment explanation
Indices: 122495748--122495774 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
122495738 ACCCTAGCTT
122495748 CCCACTTGCCTCTC
1 CCCACTTGCCTCTC
122495762 CCCACTTGCCTCT
1 CCCACTTGCCTCT
122495775 GCCACCACCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.56, G:0.07, T:0.30
Consensus pattern (14 bp):
CCCACTTGCCTCTC
Found at i:122496170 original size:25 final size:24
Alignment explanation
Indices: 122496142--122496191 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
122496132 TTTCACATAT
*
122496142 ATATAA-ACTAAAAACATATAAAAAA
1 ATATAATAC-AAAAAAAT-TAAAAAA
122496167 ATATAATACAAAAAAATTAAAAAA
1 ATATAATACAAAAAAATTAAAAAA
122496191 A
1 A
122496192 AGGGGAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 8 0.35
25 13 0.57
26 2 0.09
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (24 bp):
ATATAATACAAAAAAATTAAAAAA
Found at i:122497150 original size:26 final size:25
Alignment explanation
Indices: 122497088--122497152 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 25
122497078 TTTTAATATC
122497088 ATAT-TTTTATATATTGTTATGTAT
1 ATATCTTTTATATATTGTTATGTAT
122497112 ATA-C-TTTA-ATATTGTTA-GTTAT
1 ATATCTTTTATATATTGTTATG-TAT
122497134 ATATCTTTTATACTATTGT
1 ATATCTTTTATA-TATTGT
122497153 ACATATATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
21 1 0.03
22 15 0.43
23 5 0.14
24 7 0.20
25 1 0.03
26 6 0.17
ACGTcount: A:0.29, C:0.05, G:0.08, T:0.58
Consensus pattern (25 bp):
ATATCTTTTATATATTGTTATGTAT
Found at i:122509726 original size:75 final size:75
Alignment explanation
Indices: 122509624--122509926 Score: 395
Period size: 76 Copynumber: 4.0 Consensus size: 75
122509614 TGATGTTTTT
* *
122509624 ATTTCTGT-TTTC--AAAAATCAACTCATATTGCGAGAGATGAGTTCAGCCTCAAGACACGTTGA
1 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGA
122509686 GGTATTTTCA
66 GGTATTTTCA
* * *
122509696 ATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGA
1 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGA
122509761 GGTAATTTTCA
66 GGT-ATTTTCA
* *
122509772 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAAGACACGCTGA
1 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGA
*
122509837 GGCAATTTT-A
66 GG-TATTTTCA
* *
122509847 ATTTCTGT-TTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGGTGAGTTGAGCCTCAGGGCA
1 ATTTCTGTCTT-TCAAAAAAATCAACTCATATTGCGAGA---GA--TGAGTTGAGCCTCAAGACA
122509909 CGCTGAGGTATTTTCA
60 CGCTGAGGTATTTTCA
122509925 AT
1 AT
122509927 GTTTGCTTTT
Statistics
Matches: 205, Mismatches: 14, Indels: 18
0.86 0.06 0.08
Matches are distributed among these distances:
72 7 0.03
73 26 0.13
74 2 0.01
75 60 0.29
76 77 0.38
77 5 0.02
78 28 0.14
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (75 bp):
ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGA
GGTATTTTCA
Found at i:122510003 original size:89 final size:87
Alignment explanation
Indices: 122509886--122510078 Score: 257
Period size: 89 Copynumber: 2.2 Consensus size: 87
122509876 TGCGAGAGGT
* * *
122509886 GAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC-AATGTTTGCTTTTCAATTTCT-TCTT
1 GAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAAT-TCTGCTTTTCAATTTATAT-TT
**
122509949 TTCAAAAAAATCAA-CTCGTATTGCGA
64 TTC--AAAAATCAATC-CACATTGCGA
*
122509975 GAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAATTCTGTTTTTCAATTTATATTTTT
1 GAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAATTCTGCTTTTCAATTTATATTTTT
*
122510040 CAAAAATCAATCCACATTGCTA
66 CAAAAATCAATCCACATTGCGA
122510062 GAGGTGAGTTGAGCCTC
1 GAGGTGAGTTGAGCCTC
122510079 GGGTCACATG
Statistics
Matches: 94, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
87 33 0.35
88 1 0.01
89 56 0.60
90 4 0.04
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (87 bp):
GAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAATTCTGCTTTTCAATTTATATTTTT
CAAAAATCAATCCACATTGCGA
Found at i:122510096 original size:89 final size:88
Alignment explanation
Indices: 122509886--122510112 Score: 241
Period size: 89 Copynumber: 2.6 Consensus size: 88
122509876 TGCGAGAGGT
* * *
122509886 GAGGTGAGTTGAGCCTCAGGGCAC-GCTGAGGTATTTTC-AATGTTTGCTTTTCAATTTCTTCTT
1 GAGGTGAGTTGAGCCTC-GGGCACAGCTGAGGTATTTTCAAAT-TATGTTTTTCAATTTATTCTT
**
122509949 TTCAAAAAAATCAACTCGTATTGCGA
64 TTC-AAAAAATCAACTCACATTGCGA
* *
122509975 GAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTATTTTCAAATTCTGTTTTTCAATTTATAT-TT
1 GAGGTGAGTTGAGCCTCGGGCACA-GCTGAGGTATTTTCAAATTATGTTTTTCAATTTAT-TCTT
*
122510038 TTC-AAAAATCAA-TCCACATTGCTA
64 TTCAAAAAATCAACT-CACATTGCGA
** *
122510062 GAGGTGAGTTGAGCCTCGGGTCACATGCCAAGGTATTTTCAATTTATGTTT
1 GAGGTGAGTTGAGCCTCGGG-CACA-GCTGAGGTATTTTCAAATTATGTTT
122510113 CAAAAAAATC
Statistics
Matches: 118, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
86 1 0.01
87 37 0.31
88 2 0.02
89 74 0.63
90 4 0.03
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (88 bp):
GAGGTGAGTTGAGCCTCGGGCACAGCTGAGGTATTTTCAAATTATGTTTTTCAATTTATTCTTTT
CAAAAAATCAACTCACATTGCGA
Found at i:122510145 original size:75 final size:75
Alignment explanation
Indices: 122510022--122510408 Score: 291
Period size: 75 Copynumber: 5.0 Consensus size: 75
122510012 CAAATTCTGT
* *** * * * *
122510022 TTTTCAATTTATATTTTTCAAAAATCAA-TCCACATTGCTAGAGGTGAGTTGAGCCTCGGGTCAC
1 TTTTCAATTTATGTTTCAAAAAAATCAACT-CATATTGCGAGAGATGAGTTGAGCCTCAGGTCAC
* **
122510086 ATGCCAAGGTA
65 ACGCTGAGGTA
*
122510097 TTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCTTCAGGTCACA
1 TTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGTCACA
122510162 CGCTGAGGTA
66 CGCTGAGGTA
* * ** * * *
122510172 TTTTCAATTCTTTTTTTTTTTAAAAAGTCAACTCGTATTGCGAGAG-TCGAGTTGAGCCTTAGG-
1 TTTTCAA---TTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGAT-GAGTTGAGCCTCAGGT
122510235 -ACACGCTGAGGTA
62 CACACGCTGAGGTA
* * * * *
122510248 TTTTCAATTTCTGTTTTTCAATTTATGTATTTCAAAAATCAATTCATGTTGCTAGAGGTGAGTTG
1 TTTTCAATTTATG--TTTC-----A---A----AAAAATCAACTCATATTGCGAGAGATGAGTTG
* *
122510313 AGCCTCGGGTCACATGCTGAGGTA
52 AGCCTCAGGTCACACGCTGAGGTA
* * * *
122510337 TTTTCAATTTATG-TTCAAAAAAATCAACT-ATATTGCAAGAAATGAGTTGAGCATCAGGTCATA
1 TTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGTCACA
122510400 CGCTGAGGT
66 CGCTGAGGT
122510409 GAGTTGAGTC
Statistics
Matches: 248, Mismatches: 42, Indels: 46
0.74 0.12 0.14
Matches are distributed among these distances:
73 39 0.16
74 10 0.04
75 71 0.29
76 21 0.08
77 1 0.00
78 44 0.18
81 1 0.00
83 1 0.00
86 3 0.01
87 32 0.13
88 1 0.00
89 24 0.10
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (75 bp):
TTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGTCACA
CGCTGAGGTA
Found at i:122510225 original size:78 final size:77
Alignment explanation
Indices: 122510115--122510265 Score: 218
Period size: 78 Copynumber: 1.9 Consensus size: 77
122510105 TTATGTTTCA
122510115 AAAAAATCAACTCATATTGCGAGAGATGAGTTGAG-CTTCAGGTCACACGCTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTT-AGG--ACACGCTGAGGTATTTTCAA
*
122510179 -TTCTTTTTTTTTTT
63 TTTCTGTTTTTTTTT
* *
122510193 AAAAAGTCAACTCGTATTGCGAGAG-TCGAGTTGAGCCTTAGGACACGCTGAGGTATTTTCAATT
1 AAAAAATCAACTCATATTGCGAGAGAT-GAGTTGAGCCTTAGGACACGCTGAGGTATTTTCAATT
122510257 TCTGTTTTT
65 TCTGTTTTT
122510266 CAATTTATGT
Statistics
Matches: 67, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
76 20 0.30
77 10 0.15
78 34 0.51
79 3 0.04
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (77 bp):
AAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTAGGACACGCTGAGGTATTTTCAATTT
CTGTTTTTTTTT
Found at i:122510226 original size:329 final size:326
Alignment explanation
Indices: 122509690--122510343 Score: 788
Period size: 329 Copynumber: 2.0 Consensus size: 326
122509680 CGTTGAGGTA
* *
122509690 TTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTATATCTTTC-AAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACA
** * *
122509755 TGCTGAGGTAATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGA
65 TGCCAAGGTAATTTTCAATTTATG-CTTTCAAAAAAATCAACTCATATTGCGAAAGATGAGTTGA
122509820 GCCTCAAGACACGCTGAGGCAATTTTAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGG
129 GCCTCAAGACACGCTGAGGCAATTTTAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGG
* * * *
122509885 TGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATGTT-TGCTTTTCAATTTCT-TCT
194 T---GCGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAT-TTCTGCTTTTCAATTTATGT-A
*
122509948 TTTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTATTTT
254 TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGGTATTTT
122510012 CAAATTCTGT
317 CAAATTCTGT
* * **
122510022 TTTTCAATTTATATTTTTC-AAAAATCAA-TCCACATTGCTAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTCAATTTATATCTTTCAAAAAATCAACT-CACATTGCGAGAGGTGAGTTGAGCCTCAAG--A
*
122510085 CATGCCAAGGT-ATTTTCAATTTATG-TTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTG
63 CATGCCAAGGTAATTTTCAATTTATGCTTTCAAAAAAATCAACTCATATTGCGAAAGATGAGTTG
* * * * * * * *
122510148 AGCTTCAGGTCACACGCTGAGG-TATTTTCAATTCTTTTTTTTTTTAAAAAGTCAACTCGTATTG
128 AGCCTCAAG--ACACGCTGAGGCAATTTT-AA-T-TTCTGTTTGTCAAAAA-TCAACTCATATTG
* *
122510212 CGAGA-GT-CGAGTTGAGCCTTAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTATG
187 CGAGAGGTGCGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGCTTTTCAATTTATG
* * * * *
122510275 TATTTCAAAAATCAATTCATGTTGCTAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTT
252 TATTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACGCTGAGGTATTT
122510340 TCAA
316 TCAA
122510344 TTTATGTTCA
Statistics
Matches: 278, Mismatches: 31, Indels: 29
0.82 0.09 0.09
Matches are distributed among these distances:
327 36 0.13
328 2 0.01
329 114 0.41
330 41 0.15
331 26 0.09
332 28 0.10
333 14 0.05
334 17 0.06
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (326 bp):
TTTTCAATTTATATCTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACAT
GCCAAGGTAATTTTCAATTTATGCTTTCAAAAAAATCAACTCATATTGCGAAAGATGAGTTGAGC
CTCAAGACACGCTGAGGCAATTTTAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTG
CGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGCTTTTCAATTTATGTATTTCAAA
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGGTATTTTCAAATTCTG
T
Found at i:122510267 original size:14 final size:14
Alignment explanation
Indices: 122510248--122510282 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
122510238 CGCTGAGGTA
*
122510248 TTTTCAATTTCTGT
1 TTTTCAATTTATGT
122510262 TTTTCAATTTATGT
1 TTTTCAATTTATGT
*
122510276 ATTTCAA
1 TTTTCAA
122510283 AAATCAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.23, C:0.11, G:0.06, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTATGT
Found at i:122511175 original size:16 final size:14
Alignment explanation
Indices: 122511136--122511162 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
122511126 ACCCTAGCTT
122511136 CCCACTTGCCTCTC
1 CCCACTTGCCTCTC
122511150 CCCACTTGCCTCT
1 CCCACTTGCCTCT
122511163 GCCACCACCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.56, G:0.07, T:0.30
Consensus pattern (14 bp):
CCCACTTGCCTCTC
Found at i:122512397 original size:2 final size:2
Alignment explanation
Indices: 122512385--122512416 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
122512375 ATTCTAATAC
122512385 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
122512417 TTTCTCATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:122512507 original size:24 final size:24
Alignment explanation
Indices: 122512456--122512524 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 24
122512446 TAATATCATA
122512456 TTTTATATATTGTTATGTATATAC
1 TTTTATATATTGTTATGTATATAC
122512480 -TTTA-ATATTGTTA-GTTATATATC
1 TTTTATATATTGTTATG-TATATA-C
*
122512503 TTTTATACTATT-TTACGTATAT
1 TTTTATA-TATTGTTATGTATAT
122512525 TTCTGATACT
Statistics
Matches: 39, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
21 1 0.03
22 15 0.38
23 5 0.13
24 4 0.10
25 9 0.23
26 5 0.13
ACGTcount: A:0.29, C:0.06, G:0.07, T:0.58
Consensus pattern (24 bp):
TTTTATATATTGTTATGTATATAC
Found at i:122512572 original size:2 final size:2
Alignment explanation
Indices: 122512565--122512614 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
122512555 TATTATTATT
122512565 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
122512607 TA TA TA TA
1 TA TA TA TA
122512615 CGTACTTATG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:122518936 original size:25 final size:25
Alignment explanation
Indices: 122518882--122518929 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 25
122518872 CTTAAGTTAA
122518882 TAATTT-T-TTTTAAAAAATGTAGT
1 TAATTTGTATTTTAAAAAATGTAGT
122518905 TAATTTGTATTTT-AAAAATG-AGT
1 TAATTTGTATTTTAAAAAATGTAGT
122518928 TA
1 TA
122518930 GTATTTGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 11 0.48
24 8 0.35
25 4 0.17
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (25 bp):
TAATTTGTATTTTAAAAAATGTAGT
Found at i:122525015 original size:6 final size:6
Alignment explanation
Indices: 122525004--122525030 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
122524994 AAAAATAATT
122525004 AAAAGA AAAAGA AAAAGA AAAAGA AAA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAA
122525031 TGAGAAAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:122526882 original size:17 final size:17
Alignment explanation
Indices: 122526860--122526893 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
122526850 AAATTATAAT
*
122526860 AAAAATATAAATCATTA
1 AAAAATATAAATAATTA
122526877 AAAAATATAAATAATTA
1 AAAAATATAAATAATTA
122526894 TTTAAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAATATAAATAATTA
Found at i:122526917 original size:16 final size:16
Alignment explanation
Indices: 122526896--122526926 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
122526886 AATAATTATT
*
122526896 TAAAAATTTTAAAAAA
1 TAAAAATATTAAAAAA
122526912 TAAAAATATTAAAAA
1 TAAAAATATTAAAAA
122526927 GTATAATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
TAAAAATATTAAAAAA
Found at i:122527118 original size:18 final size:19
Alignment explanation
Indices: 122527079--122527129 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
122527069 TCCATGTTAG
122527079 ATTTTTAT-ATTTTATGAT
1 ATTTTTATAATTTTATGAT
122527097 ATTTTTATAATTATT-TGA-
1 ATTTTTATAATT-TTATGAT
*
122527115 ATTTATATAATTTTA
1 ATTTTTATAATTTTA
122527130 AAAATATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
17 2 0.07
18 19 0.66
19 6 0.21
20 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (19 bp):
ATTTTTATAATTTTATGAT
Found at i:122527837 original size:2 final size:2
Alignment explanation
Indices: 122527830--122527857 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
122527820 GCTTTACATA
122527830 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
122527858 TTGCAAGTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122530911 original size:19 final size:19
Alignment explanation
Indices: 122530870--122530909 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
122530860 GATAAAACAT
122530870 AAAGTCTAAATACAAAAAA
1 AAAGTCTAAATACAAAAAA
*
122530889 AAAG-CTAATTACAAAAAA
1 AAAGTCTAAATACAAAAAA
122530907 AAA
1 AAA
122530910 AGTAAGAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.70, C:0.10, G:0.05, T:0.15
Consensus pattern (19 bp):
AAAGTCTAAATACAAAAAA
Found at i:122531004 original size:36 final size:36
Alignment explanation
Indices: 122530958--122531029 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
122530948 AAATTCATTA
122530958 AAAAGAGAAAGAAAGAATCATAGGGAGAGAGTGTGT
1 AAAAGAGAAAGAAAGAATCATAGGGAGAGAGTGTGT
*
122530994 AAAAGAGAAAGAAAGTATCATAGGGAGAGAGTGTGT
1 AAAAGAGAAAGAAAGAATCATAGGGAGAGAGTGTGT
122531030 GTGAAACAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.49, C:0.03, G:0.33, T:0.15
Consensus pattern (36 bp):
AAAAGAGAAAGAAAGAATCATAGGGAGAGAGTGTGT
Found at i:122534780 original size:2 final size:2
Alignment explanation
Indices: 122534773--122534798 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
122534763 ATATTTAAAC
122534773 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
122534799 GTCATGTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122536571 original size:13 final size:13
Alignment explanation
Indices: 122536553--122536577 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
122536543 TGCTTTCATT
122536553 TTTTTATTTTTTA
1 TTTTTATTTTTTA
122536566 TTTTTATTTTTT
1 TTTTTATTTTTT
122536578 TAATCATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:122537596 original size:18 final size:18
Alignment explanation
Indices: 122537573--122537608 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
122537563 ATATACATAT
*
122537573 TTTATTTTTATCATTTTA
1 TTTATTTATATCATTTTA
*
122537591 TTTATTTATATCCTTTTA
1 TTTATTTATATCATTTTA
122537609 CATAGTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTATTTATATCATTTTA
Found at i:122537934 original size:25 final size:27
Alignment explanation
Indices: 122537888--122537937 Score: 77
Period size: 25 Copynumber: 1.9 Consensus size: 27
122537878 TGCGCATTAC
*
122537888 TTATTTTAAAATATTTTTTATATATTT
1 TTATTTTAAAATATTTTATATATATTT
122537915 TTATTTT-AAA-ATTTTATATATAT
1 TTATTTTAAAATATTTTATATATAT
122537938 GTGTATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 12 0.55
26 3 0.14
27 7 0.32
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (27 bp):
TTATTTTAAAATATTTTATATATATTT
Found at i:122538128 original size:28 final size:25
Alignment explanation
Indices: 122538095--122538154 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 25
122538085 TTTAACATAC
122538095 TATTTATTTAAAATTTGCTTTATATAT
1 TATTTATTTAAAA-TTG-TTTATATAT
* *
122538122 TACTTTATTTCAAATTGTTTATATTT
1 TA-TTTATTTAAAATTGTTTATATAT
122538148 TATTTAT
1 TATTTAT
122538155 GTTGAATCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 5 0.17
26 10 0.33
27 5 0.17
28 10 0.33
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (25 bp):
TATTTATTTAAAATTGTTTATATAT
Found at i:122540682 original size:36 final size:36
Alignment explanation
Indices: 122540635--122540706 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
122540625 CCCCGTCGAC
122540635 TTGTAAGGCTGCCAAATCCCTAGGGATTTGTCTAAG
1 TTGTAAGGCTGCCAAATCCCTAGGGATTTGTCTAAG
*
122540671 TTGTAAGGCTGCCAAATCCCTAGGGATTTGTTTAAG
1 TTGTAAGGCTGCCAAATCCCTAGGGATTTGTCTAAG
122540707 GCCACGTCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (36 bp):
TTGTAAGGCTGCCAAATCCCTAGGGATTTGTCTAAG
Found at i:122542801 original size:26 final size:25
Alignment explanation
Indices: 122542707--122542839 Score: 205
Period size: 26 Copynumber: 5.2 Consensus size: 25
122542697 TGATACAAAT
122542707 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
122542733 TGATAATGGTTAGGTAAATGTT-CA
1 TGATAATGGTTAGGTAAATGTTCCA
*
122542757 TGATAATAGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
*
122542782 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
*
122542808 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
122542834 TGATAA
1 TGATAA
122542840 GAATTCATGT
Statistics
Matches: 102, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
24 23 0.23
25 24 0.24
26 55 0.54
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:122548561 original size:26 final size:26
Alignment explanation
Indices: 122548492--122548626 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
122548482 TGATACAAAT
*
122548492 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
122548518 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
122548543 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
122548569 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
122548595 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
122548621 TGATAA
1 TGATAA
122548627 GAATTCATGT
Statistics
Matches: 104, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
25 24 0.23
26 80 0.77
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:122552196 original size:3 final size:3
Alignment explanation
Indices: 122552182--122552250 Score: 122
Period size: 3 Copynumber: 23.3 Consensus size: 3
122552172 TCGATTTTAC
*
122552182 TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
122552230 TAT TAT TAT TAT TA- TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT T
122552251 CATGTATACA
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
2 2 0.03
3 61 0.97
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:122552878 original size:3 final size:3
Alignment explanation
Indices: 122552870--122552959 Score: 153
Period size: 3 Copynumber: 29.7 Consensus size: 3
122552860 CTATCATTGC
* *
122552870 ATT ATT ATT ATT ATT ATT CTT ATT ATTT ATT ATT CTT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT
122552916 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
122552960 CATTGTTTGT
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
3 79 0.96
4 3 0.04
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:122553481 original size:129 final size:129
Alignment explanation
Indices: 122553260--122553495 Score: 339
Period size: 129 Copynumber: 1.8 Consensus size: 129
122553250 AACGGAGACG
* * *
122553260 ATGTTCGATGTTTAGCAATTCGGGGAATCGTGCCCTATGTGCTGGGTTGCAATTTCTTGTTTGCC
1 ATGTTCGACGTTCAGCAATTCGGGGAATCGTGCCCTATGTGCTGGGTTGCAATTTCTCGTTTGCC
* * * * *
122553325 CAAAATAATCGGATGTCTCTTTAGAATTTCGTTCATGTTTTCTAAAAAATTTAAAACGAAGGAA
66 CAAAATAATCGAATATCCCTTTAGAATTTCATTCACGTTTTCTAAAAAATTTAAAACGAAGGAA
* * *
122553389 ATGTTCGACGTTCGGCAATTC-GGGAATCGTGTCCTATTGTGCTGGGTTGCAATTTCTCGTTTGT
1 ATGTTCGACGTTCAGCAATTCGGGGAATCGTGCCCTA-TGTGCTGGGTTGCAATTTCTCGTTTGC
* *
122553453 GCAAAATAATCGAATATCCCTTTGGAATTTCATTCACGTTTTC
65 CCAAAATAATCGAATATCCCTTTAGAATTTCATTCACGTTTTC
122553496 CAAAGCGAGA
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
128 14 0.15
129 79 0.85
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.37
Consensus pattern (129 bp):
ATGTTCGACGTTCAGCAATTCGGGGAATCGTGCCCTATGTGCTGGGTTGCAATTTCTCGTTTGCC
CAAAATAATCGAATATCCCTTTAGAATTTCATTCACGTTTTCTAAAAAATTTAAAACGAAGGAA
Found at i:122561522 original size:19 final size:19
Alignment explanation
Indices: 122561498--122561536 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
122561488 GCATAAAGAA
122561498 ATCGAGGTCTATGTTGATG
1 ATCGAGGTCTATGTTGATG
122561517 ATCGAGGTCTATGTTGATG
1 ATCGAGGTCTATGTTGATG
122561536 A
1 A
122561537 CATGATAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.10, G:0.31, T:0.36
Consensus pattern (19 bp):
ATCGAGGTCTATGTTGATG
Found at i:122565238 original size:49 final size:46
Alignment explanation
Indices: 122565166--122565293 Score: 131
Period size: 41 Copynumber: 2.8 Consensus size: 46
122565156 AATATAGCAA
*
122565166 ATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTGAAGCTAAATTACAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAGC-AAA--ACAG
* * *
122565215 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-T----CAAAACAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAGCAAAACAG
* * *
122565256 ATCTTGTCTCCCTAAAGTTGCAGTGGAACAGATTGAAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAG
122565294 ACGGTAAACA
Statistics
Matches: 64, Mismatches: 10, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
41 30 0.47
42 1 0.02
43 3 0.05
44 1 0.02
48 1 0.02
49 28 0.44
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.30
Consensus pattern (46 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAGCAAAACAG
Found at i:122565274 original size:90 final size:88
Alignment explanation
Indices: 122565119--122565556 Score: 309
Period size: 90 Copynumber: 4.9 Consensus size: 88
122565109 TGAAGATTGT
* * * * *
122565119 AGATCTTGTTTCTCTG-AGATTACAGTAGAGCAGATCAAATATAGCAAATCTTATTTCCCTGAAG
1 AGATCTTATCTCTCTGAAG-TTGCAGTAGAGCAGATC-AA-A-A-CAGATCTTATCTCCCTGAAG
*
122565183 TTGCAGTGGAATAGATTGAAGCTAAATTAC
61 TTGCAGTGGAACAGATTGAAG--AAATTAC
* * *
122565213 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCAAAACAGATCTTGTCTCCCTAAAGTTGCA
1 AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAGATCTTATCTCCCTGAAGTTGCA
***
122565278 GTGGAACAGATTGAAGACGGTA-
66 GTGGAACAGATTGAAGAAATTAC
** * ** * * * *
122565300 A-A-CATTGCCT-TCCTGAAGTTGCAGT-GAAGCAGATTTAAGCCACCATCCTAACTCCCTAAAG
1 AGATC-TTATCTCT-CTGAAGTTGCAGTAG-AGCAGA-TCAAAACA-GATCTTATCTCCCTGAAG
* ** ** **
122565361 TTGTAGTGGAGTAGGCTGAAG--ATTGT
61 TTGCAGTGGAACAGATTGAAGAAATTAC
* * * * * * *
122565387 AGATCTTGTTTCCCT-AAGATTGCAGTGGAGCAGATCAAATTTAGCAAATCTTATTTTCCTGAAG
1 AGATCTTATCTCTCTGAAG-TTGCAGTAGAGCAGATCAAA---A-CAGATCTTATCTCCCTGAAG
*
122565451 TTACAGTGGAACAGATTGAAGCTAAATTAC
61 TTGCAGTGGAACAGATTGAAG--AAATTAC
*
122565481 AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAGATCTTGTCTCCCTGAAGTTGCA
1 AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAGATCTTATCTCCCTGAAGTTGCA
122565546 GTGGAACAGAT
66 GTGGAACAGAT
122565557 CGACGATGGT
Statistics
Matches: 264, Mismatches: 59, Indels: 46
0.72 0.16 0.12
Matches are distributed among these distances:
85 3 0.01
86 24 0.09
87 13 0.05
88 53 0.20
89 2 0.01
90 94 0.36
91 4 0.02
92 1 0.00
93 2 0.01
94 63 0.24
95 5 0.02
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (88 bp):
AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAGATCTTATCTCCCTGAAGTTGCA
GTGGAACAGATTGAAGAAATTAC
Found at i:122565321 original size:135 final size:134
Alignment explanation
Indices: 122565176--122565607 Score: 448
Period size: 135 Copynumber: 3.2 Consensus size: 134
122565166 ATCTTATTTC
*
122565176 CCTGAAGTTGCAGTGGAATAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAG
1 CCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAG
* *
122565241 AGTAGATCAAAACAGATCTTGTCTCCCTAAAGTTGCAGTGGAACAGATTGAAGACGGTAAA-CAT
66 AGTAGATCAAAACAGATCTTGTCTCCCT-AAGTTGCAGTGGAACAGATCGAAGATGGTAAATC-T
122565305 TGCCTT
129 TGCCTT
* * * * * * * * *
122565311 CCTGAAGTTGCAGT-GAAGCAGATTTAAGC-----CAC-CATCCTAACTCCCTAAAGTTGTAGTG
1 CCTGAAGTTGCAGTGGAA-CAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTA
* * ** * * * ** * *
122565369 GAGTAGGCTGAAGATTGTAGATCTTGTTTCCCTAAGATTGCAGTGGAGCAGATCAAATTTAGCAA
65 GAGTA-GATCAA-A--ACAGATCTTGTCTCCCTAAG-TTGCAGTGGAACAGATCGAAGATGGTAA
***
122565434 ATCTTATTTT
125 ATCTTGCCTT
*
122565444 CCTGAAGTTACAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAG
1 CCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAG
* *
122565509 AGCAGATCAAAACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGACGATGGTAAATCTT
66 AGTAGATCAAAACAGATCTTGTCTCCCT-AAGTTGCAGTGGAACAGATCGAAGATGGTAAATCTT
122565574 GCCTT
130 GCCTT
* *
122565579 CCTGAAGTTGCAGTGAAACAGATTCAAGC
1 CCTGAAGTTGCAGTGGAACAGATTGAAGC
122565608 CACCAAGCCT
Statistics
Matches: 227, Mismatches: 55, Indels: 30
0.73 0.18 0.10
Matches are distributed among these distances:
129 24 0.11
130 6 0.03
131 1 0.00
132 3 0.01
133 62 0.27
134 7 0.03
135 91 0.40
136 3 0.01
137 1 0.00
138 6 0.03
139 23 0.10
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (134 bp):
CCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAG
AGTAGATCAAAACAGATCTTGTCTCCCTAAGTTGCAGTGGAACAGATCGAAGATGGTAAATCTTG
CCTT
Found at i:122565413 original size:88 final size:87
Alignment explanation
Indices: 122565043--122565421 Score: 234
Period size: 88 Copynumber: 4.3 Consensus size: 87
122565033 ACCTAGGCTT
* * * * *
122565043 CCTGATGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
1 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCA-CATCCTATCTCCCTAAAGTTGCAGTGGAATAGA
122565108 CTGAAGATTGTAGATCTTGTTTC
65 CTGAAGATTGTAGATCTTGTTTC
* * * * * * *
122565131 TCTG-AGATTACAGT-AGAGCAGATCAAATATAG-CAAATCTTATTTCCCTGAAGTTGCAGTGGA
1 CCTGAAG-TTGCAGTGA-AGCAGAT---TTA-AGCCACATCCTATCTCCCTAAAGTTGCAGTGGA
* ** * *
122565193 ATAGATTGAAGCTAAATTACAGATCTTATCTC
60 ATAGACTGAAG----ATTGTAGATCTTGTTTC
* * * ** * * * *
122565225 TCTGAAGTTGCAGT-AGAGTAGA-TCAAAACAGATCTTGTCTCCCTAAAGTTGCAGTGGAACAGA
1 CCTGAAGTTGCAGTGA-AGCAGATTTAAGCCACATCCTATCTCCCTAAAGTTGCAGTGGAATAGA
* ** * *
122565288 TTGAAGACGGTA-AACATTGCCTT-
65 CTGAAGATTGTAGATC-TTG-TTTC
* * * *
122565311 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAACTCCCTAAAGTTGTAGTGGAGTAGG
1 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCA-CATCCTATCTCCCTAAAGTTGCAGTGGAATAGA
122565376 CTGAAGATTGTAGATCTTGTTTC
65 CTGAAGATTGTAGATCTTGTTTC
*
122565399 CCT-AAGATTGCAGTGGAGCAGAT
1 CCTGAAG-TTGCAGTGAAGCAGAT
122565422 CAAATTTAGC
Statistics
Matches: 217, Mismatches: 54, Indels: 40
0.70 0.17 0.13
Matches are distributed among these distances:
85 2 0.01
86 22 0.10
87 14 0.06
88 71 0.33
89 3 0.01
90 67 0.31
91 4 0.02
92 2 0.01
94 30 0.14
95 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (87 bp):
CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACATCCTATCTCCCTAAAGTTGCAGTGGAATAGAC
TGAAGATTGTAGATCTTGTTTC
Found at i:122565461 original size:268 final size:267
Alignment explanation
Indices: 122565005--122565612 Score: 991
Period size: 268 Copynumber: 2.3 Consensus size: 267
122564995 TTCCTTGAGA
* * * * * *
122565005 TTGCAGTGGAGCAGATCGAAGACGGCGAACCTAGGCTTCCTGATGTTGCAGTGAAGCAGATTTAA
1 TTGCAGTGGAACAGATCGAAGACGG-TAAACTTGCCTTCCTGAAGTTGCAGTGAAGCAGATTTAA
* * *
122565070 GCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGTTTCTCTG
65 GCCACCATCCTAACTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGTTTCCCTA
* *
122565135 AGATTACAGTAGAGCAGATCAAATATAGCAAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATT
130 AGATTACAGTAGAGCAGATCAAATATAGCAAATCTTATTTCCCTGAAGTTACAGTGGAACAGATT
*
122565200 GAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCAAAACAGATCTTGTCT
195 GAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAGATCTTGTCT
122565265 CCCTAAAG
260 CCCTAAAG
*
122565273 TTGCAGTGGAACAGATTGAAGACGGTAAACATTGCCTTCCTGAAGTTGCAGTGAAGCAGATTTAA
1 TTGCAGTGGAACAGATCGAAGACGGTAAAC-TTGCCTTCCTGAAGTTGCAGTGAAGCAGATTTAA
122565338 GCCACCATCCTAACTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGTTTCCCTA
65 GCCACCATCCTAACTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGTTTCCCTA
* * * *
122565403 AGATTGCAGTGGAGCAGATCAAATTTAGCAAATCTTATTTTCCTGAAGTTACAGTGGAACAGATT
130 AGATTACAGTAGAGCAGATCAAATATAGCAAATCTTATTTCCCTGAAGTTACAGTGGAACAGATT
122565468 GAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAGATCTTGTCT
195 GAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAGATCTTGTCT
*
122565533 CCCTGAAG
260 CCCTAAAG
* * * *
122565541 TTGCAGTGGAACAGATCGACGATGGTAAATCTTGCCTTCCTGAAGTTGCAGTGAAACAGATTCAA
1 TTGCAGTGGAACAGATCGAAGACGGTAAA-CTTGCCTTCCTGAAGTTGCAGTGAAGCAGATTTAA
122565606 GCCACCA
65 GCCACCA
122565613 AGCCTTAATC
Statistics
Matches: 315, Mismatches: 23, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
267 3 0.01
268 311 0.99
269 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (267 bp):
TTGCAGTGGAACAGATCGAAGACGGTAAACTTGCCTTCCTGAAGTTGCAGTGAAGCAGATTTAAG
CCACCATCCTAACTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGTTTCCCTAA
GATTACAGTAGAGCAGATCAAATATAGCAAATCTTATTTCCCTGAAGTTACAGTGGAACAGATTG
AAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAGATCTTGTCTC
CCTAAAG
Found at i:122565539 original size:41 final size:41
Alignment explanation
Indices: 122565479--122565557 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
122565469 AAGCTAAATT
* *
122565479 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAA
1 ACAGATCTTATCTCCCTGAAGTTGCAGTAGAACAGATCAAA
* *
122565520 ACAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATC
1 ACAGATCTTATCTCCCTGAAGTTGCAGTAGAACAGATC
122565558 GACGATGGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (41 bp):
ACAGATCTTATCTCCCTGAAGTTGCAGTAGAACAGATCAAA
Found at i:122565678 original size:89 final size:89
Alignment explanation
Indices: 122565567--122565741 Score: 309
Period size: 89 Copynumber: 2.0 Consensus size: 89
122565557 CGACGATGGT
*
122565567 AAATCTTGCCTTCCTGAAGTTGCAGTGAAA-CAGATTCAAGCCACCAAGCCTTAATCCCCTAAGC
1 AAATCTTGCCTTCCTGAAGTTGCAGT-AAAGCAGATTCAAGCCACCAAGCCTTAACCCCCTAAGC
122565631 -AGTAGGGTAATAGGCTGAAAATTAC
65 GA-TAGGGTAATAGGCTGAAAATTAC
122565656 AAATCTTGCCTTCCTGAAGTTGCAGTAAAGCAGATTCAAGCCACCAAGCCTTAACCCCCTAAGCG
1 AAATCTTGCCTTCCTGAAGTTGCAGTAAAGCAGATTCAAGCCACCAAGCCTTAACCCCCTAAGCG
122565721 ATAGGGTAATAGGCTGAAAAT
66 ATAGGGTAATAGGCTGAAAAT
122565742 CACTAGTCTT
Statistics
Matches: 83, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
88 3 0.04
89 79 0.95
90 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (89 bp):
AAATCTTGCCTTCCTGAAGTTGCAGTAAAGCAGATTCAAGCCACCAAGCCTTAACCCCCTAAGCG
ATAGGGTAATAGGCTGAAAATTAC
Found at i:122565777 original size:89 final size:89
Alignment explanation
Indices: 122565567--122565778 Score: 282
Period size: 89 Copynumber: 2.4 Consensus size: 89
122565557 CGACGATGGT
* * * *
122565567 AAATCTTGCCTTCCTGAAGTTGCAGTGAAACAGATTCAAGCCACCAAGCCTTAATCCCCTAAGCA
1 AAATCTTACCTCCCTGAAGTTGCAGTGAAGCAGATTCAAGCCACCAAGCCTTAACCCCCTAAGCA
*
122565632 GTAGGGTAATAGGCTGAAAATTAC
66 GTAGGGTAATAGGCTGAAAATCAC
* * *
122565656 AAATCTTGCCTTCCTGAAGTTGCAGTAAAGCAGATTCAAGCCACCAAGCCTTAACCCCCTAAGC-
1 AAATCTTACCTCCCTGAAGTTGCAGTGAAGCAGATTCAAGCCACCAAGCCTTAACCCCCTAAGCA
122565720 GATAGGGTAATAGGCTGAAAATCAC
66 G-TAGGGTAATAGGCTGAAAATCAC
* * * * * *
122565745 TAGTCTTATCTCCCTGAAATTACAGTGGAGCAGA
1 AAATCTTACCTCCCTGAAGTTGCAGTGAAGCAGA
122565779 CTGAAGACAA
Statistics
Matches: 109, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
88 1 0.01
89 108 0.99
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (89 bp):
AAATCTTACCTCCCTGAAGTTGCAGTGAAGCAGATTCAAGCCACCAAGCCTTAACCCCCTAAGCA
GTAGGGTAATAGGCTGAAAATCAC
Found at i:122567023 original size:26 final size:26
Alignment explanation
Indices: 122566983--122567054 Score: 117
Period size: 27 Copynumber: 2.7 Consensus size: 26
122566973 TAAAATAAAA
122566983 AATAAAAAAGGGGAAAGTTGGTAATGG
1 AATAAAAAA-GGGAAAGTTGGTAATGG
122567010 AATAAAAAAGGGAAAGTTGGTAATGG
1 AATAAAAAAGGGAAAGTTGGTAATGG
*
122567036 AATAAAAAAAAGGAAAGTT
1 AAT-AAAAAAGGGAAAGTT
122567055 TTTTTTTTGG
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
26 20 0.47
27 23 0.53
ACGTcount: A:0.54, C:0.00, G:0.28, T:0.18
Consensus pattern (26 bp):
AATAAAAAAGGGAAAGTTGGTAATGG
Found at i:122567969 original size:3 final size:3
Alignment explanation
Indices: 122567963--122568027 Score: 121
Period size: 3 Copynumber: 21.3 Consensus size: 3
122567953 ATTTTACTAC
122567963 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
122568011 TAT TAT TAT TAT ATAT T
1 TAT TAT TAT TAT -TAT T
122568028 TCATGTATAC
Statistics
Matches: 61, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 58 0.95
4 3 0.05
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:122568660 original size:3 final size:3
Alignment explanation
Indices: 122568652--122568735 Score: 141
Period size: 3 Copynumber: 27.7 Consensus size: 3
122568642 CTATCATTGC
* *
122568652 ATT ATT ATT ATT ATT AATT ATT ATT ATT ATT ATT CTT GTT ATT ATT
1 ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
122568698 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
122568736 CATTGTTTGT
Statistics
Matches: 77, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
3 74 0.96
4 3 0.04
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:122569263 original size:132 final size:132
Alignment explanation
Indices: 122569037--122569276 Score: 356
Period size: 132 Copynumber: 1.8 Consensus size: 132
122569027 AATGGAGACG
* * *
122569037 ATGTTCGATGTTTAGTAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTTGTTTGC
1 ATGTTCGACGTTTAGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGC
* * * * *
122569102 CCAAAATAATCGGATGTCTCTTTAGAATTTCGTTCATGTTTTCTAAAAAATTTTTAAAACGAAGG
66 CCAAAATAATCGAATATCCCTTTAGAATTTCATTCACGTTTTCTAAAAAATTTTTAAAACGAAGG
122569167 AA
131 AA
* * *
122569169 ATGTTCGACGTTTGGCAATTCGGGGAATCGTGCCCTATTGTGCTGGGTTGCAATTTCTCGTTTGT
1 ATGTTCGACGTTTAGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGC
*
122569234 GCAAAATAATCGAATATCCCTTT-GAAATTTCATTCACGTTTTC
66 CCAAAATAATCGAATATCCCTTTAG-AATTTCATTCACGTTTTC
122569277 CAAAGTGAGA
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
131 1 0.01
132 94 0.99
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (132 bp):
ATGTTCGACGTTTAGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGC
CCAAAATAATCGAATATCCCTTTAGAATTTCATTCACGTTTTCTAAAAAATTTTTAAAACGAAGG
AA
Found at i:122578792 original size:169 final size:171
Alignment explanation
Indices: 122578504--122578965 Score: 646
Period size: 174 Copynumber: 2.7 Consensus size: 171
122578494 TATCACATCC
* * *
122578504 TTCTTCAGTTTCCCCTATCGCGAATGGCAGCTTT-GACGTCGATTTCGCCTCCTTTTTCTTCCCT
1 TTCTTCAGGTTCCCCTATCGCAAATGGCAG-TTTCGACGTCGATTTCGTCT-CTTTTTCTTCCCT
* *
122578568 ACAATCCCACAACCAAAACCCCACCAAGAAAACAGCATTATATATGCTTGTCAAACCCTAAAAAA
64 ACAATCCCATAACCAAAACCCCACCAAGAAAACAGCATTATATATGCTAGTCAAACCCTAAAAAA
* * *
122578633 AA-GT-AAAAAA-GGTAACCGAGTTAAGAACTGAGTCACCTGT
129 AATATAAAAAAACGATAACCGAGTTAAGAACTGACTCACCTGT
* *
122578673 TTCTTCAGGTTCCCCTATCGCAAATGGCAGTTTCGACTTCGATTCCGTCTCTTCTTTCTTCCCTA
1 TTCTTCAGGTTCCCCTATCGCAAATGGCAGTTTCGACGTCGATTTCGTCTCTT-TTTCTTCCCTA
* * *
122578738 TAATCCCATAACCAAAACCCCACCAAGAAAACAACATTATATATG-TCAGTCAAACTCTAAAAAA
65 CAATCCCATAACCAAAACCCCACCAAGAAAACAGCATTATATATGCT-AGTCAAACCCTAAAAAA
*
122578802 AATTTATAAAAAAACGATGACCGAGTTAAGAACTGACTCACCTGT
129 AA--TATAAAAAAACGATAACCGAGTTAAGAACTGACTCACCTGT
** * * *
122578847 TTCTTCAGGTTCCCCTATAACAAATGGCAATTGCGACGTCGATTTTGTCTCTTTTTCCTTCCCTA
1 TTCTTCAGGTTCCCCTATCGCAAATGGCAGTTTCGACGTCGATTTCGTCTCTTTTT-CTTCCCTA
*
122578912 CAATCCCATAACCAAAACCCCACCAAGAAAACAGCATTATATATGCTTGTCAAA
65 CAATCCCATAACCAAAACCCCACCAAGAAAACAGCATTATATATGCTAGTCAAA
122578966 TCAAAACCAA
Statistics
Matches: 259, Mismatches: 24, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
168 7 0.03
169 111 0.43
172 1 0.00
173 9 0.03
174 130 0.50
175 1 0.00
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (171 bp):
TTCTTCAGGTTCCCCTATCGCAAATGGCAGTTTCGACGTCGATTTCGTCTCTTTTTCTTCCCTAC
AATCCCATAACCAAAACCCCACCAAGAAAACAGCATTATATATGCTAGTCAAACCCTAAAAAAAA
TATAAAAAAACGATAACCGAGTTAAGAACTGACTCACCTGT
Found at i:122582385 original size:27 final size:27
Alignment explanation
Indices: 122582355--122582410 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
122582345 TAATTGGTAT
122582355 CACATTTTTTGAAAACAAGGATGAGAG
1 CACATTTTTTGAAAACAAGGATGAGAG
122582382 CACATTTTTTGAAAACAAGGATGAGAG
1 CACATTTTTTGAAAACAAGGATGAGAG
122582409 CA
1 CA
122582411 TTTTGCAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.25
Consensus pattern (27 bp):
CACATTTTTTGAAAACAAGGATGAGAG
Found at i:122582611 original size:53 final size:53
Alignment explanation
Indices: 122582531--122582637 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
122582521 TCTCATTGCA
122582531 ACTCTTTCGGTGCAGGAATTTGACCAAACAGTTTGAGTGCATGGTCCAGTGCC
1 ACTCTTTCGGTGCAGGAATTTGACCAAACAGTTTGAGTGCATGGTCCAGTGCC
122582584 ACTCTTTCGGTGCAGGAATTTGACCAAACAGTTTGAGTGCATGGTCCAGTGCC
1 ACTCTTTCGGTGCAGGAATTTGACCAAACAGTTTGAGTGCATGGTCCAGTGCC
122582637 A
1 A
122582638 AAAAAGAGTA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.28
Consensus pattern (53 bp):
ACTCTTTCGGTGCAGGAATTTGACCAAACAGTTTGAGTGCATGGTCCAGTGCC
Found at i:122583086 original size:25 final size:25
Alignment explanation
Indices: 122583032--122583087 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
122583022 TTAGAAATTG
* *
122583032 AAAATAATTTAATTTAAATAATATT
1 AAAATAATTTAATATAAATAATAAT
* *
122583057 TAAATAATTTAATATAAGT-ATACAT
1 AAAATAATTTAATATAAATAATA-AT
122583082 AAAATA
1 AAAATA
122583088 TACATTTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 3 0.12
25 22 0.88
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (25 bp):
AAAATAATTTAATATAAATAATAAT
Found at i:122585822 original size:31 final size:31
Alignment explanation
Indices: 122585749--122585822 Score: 96
Period size: 33 Copynumber: 2.4 Consensus size: 31
122585739 TGTGGTACTA
*
122585749 AGAAATATATATATATATAAATAATAGTATT
1 AGAAATATATATATATATAAATAATAATATT
* *
122585780 AGAAATCATATAGTATATATAACTGATAATATT
1 AGAAAT-ATATA-TATATATAAATAATAATATT
122585813 A-AAATATATA
1 AGAAATATATA
122585823 CATAATATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
31 11 0.29
32 9 0.24
33 18 0.47
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (31 bp):
AGAAATATATATATATATAAATAATAATATT
Found at i:122585859 original size:22 final size:24
Alignment explanation
Indices: 122585805--122585859 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 24
122585795 TATATAACTG
122585805 ATAATAT-TA-AAATATATACATA
1 ATAATATATATAAATATATACATA
* *
122585827 ATATTATATATAAAT-TATTCAT-
1 ATAATATATATAAATATATACATA
122585849 ATAATATATAT
1 ATAATATATAT
122585860 TAAAAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
22 16 0.57
23 8 0.29
24 4 0.14
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (24 bp):
ATAATATATATAAATATATACATA
Found at i:122586046 original size:3 final size:3
Alignment explanation
Indices: 122586038--122586064 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
122586028 ACAAGGATAT
122586038 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
122586065 TTATTGAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:122586187 original size:3 final size:3
Alignment explanation
Indices: 122586173--122586212 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
122586163 AATGTATTTC
*
122586173 AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
122586213 TTGAAACACA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:122586220 original size:145 final size:146
Alignment explanation
Indices: 122586038--122586359 Score: 619
Period size: 145 Copynumber: 2.2 Consensus size: 146
122586028 ACAAGGATAT
*
122586038 ATAATAATAATAATAATAATAATAATATTATTGAAACACAAAAGCCATTATAATAAAAATATTAA
1 ATAATAATAATAATAATAATAATAATAATATTGAAACACAAAAGCCATTATAATAAAAATATTAA
122586103 AATAAAGTAATAGAAACATTACTAC-ATATATATATATATACATACATGAAGATATACACTAATG
66 AATAAAGTAATAGAAACATTACTACAATATATATATATATACATACATGAAGATATACACTAATG
122586167 TATTTCAATAACAATA
131 TATTTCAATAACAATA
122586183 ATAATAATAATAATAATAATAATAATAATATTGAAACACAAAAGCCATTATAATAAAAATATTAA
1 ATAATAATAATAATAATAATAATAATAATATTGAAACACAAAAGCCATTATAATAAAAATATTAA
122586248 AATAAAGTAATAGAAACATTACTACATATATATATATATATACATACATGAAGATATACACTAAT
66 AATAAAGTAATAGAAACATTACTACA-ATATATATATATATACATACATGAAGATATACACTAAT
122586313 GTATTTCAATAACAATA
130 GTATTTCAATAACAATA
122586330 ATAATAATAATAATAATAATAATAATAATA
1 ATAATAATAATAATAATAATAATAATAATA
122586360 ATAATAATAA
Statistics
Matches: 174, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
145 89 0.51
147 85 0.49
ACGTcount: A:0.57, C:0.08, G:0.04, T:0.31
Consensus pattern (146 bp):
ATAATAATAATAATAATAATAATAATAATATTGAAACACAAAAGCCATTATAATAAAAATATTAA
AATAAAGTAATAGAAACATTACTACAATATATATATATATACATACATGAAGATATACACTAATG
TATTTCAATAACAATA
Found at i:122586334 original size:3 final size:3
Alignment explanation
Indices: 122586320--122586371 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
122586310 AATGTATTTC
*
122586320 AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
122586368 AAT A
1 AAT A
122586372 TTGAAATGCA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:122587437 original size:35 final size:34
Alignment explanation
Indices: 122587384--122587465 Score: 128
Period size: 35 Copynumber: 2.4 Consensus size: 34
122587374 GCAGGTGCGG
* *
122587384 TGGGAGTGTGTGATGGTGCTGGTGGCAGACAGCA
1 TGGGAGAGTGGGATGGTGCTGGTGGCAGACAGCA
*
122587418 TGGGAGAGTGGGAGTGGTGCTGGTGGCAGATAGCA
1 TGGGAGAGTGGGA-TGGTGCTGGTGGCAGACAGCA
122587453 TGGGAGAGTGGGA
1 TGGGAGAGTGGGA
122587466 AGAGGCAAGT
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
34 11 0.25
35 33 0.75
ACGTcount: A:0.20, C:0.09, G:0.51, T:0.21
Consensus pattern (34 bp):
TGGGAGAGTGGGATGGTGCTGGTGGCAGACAGCA
Found at i:122587862 original size:31 final size:31
Alignment explanation
Indices: 122587824--122587886 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
122587814 CGAACTAACT
122587824 TTAAGGGACAGACTTGTACTATCCTATATTC
1 TTAAGGGACAGACTTGTACTATCCTATATTC
122587855 TTAAGGGACAGACTTGTACTATCCTATATTC
1 TTAAGGGACAGACTTGTACTATCCTATATTC
122587886 T
1 T
122587887 GAAGAGATGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.37
Consensus pattern (31 bp):
TTAAGGGACAGACTTGTACTATCCTATATTC
Found at i:122592621 original size:2 final size:2
Alignment explanation
Indices: 122592614--122592648 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
122592604 AATTAAAATG
122592614 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
122592649 ACATTATTCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:122602548 original size:74 final size:74
Alignment explanation
Indices: 122602427--122602565 Score: 269
Period size: 74 Copynumber: 1.9 Consensus size: 74
122602417 TTTCTTTCGG
*
122602427 GGATAAGGAACTTAAATCAAGGAAATCGTTAAATGGGTGTGTTTGTTATTTTTTTATATATAATT
1 GGATAAGGAACTTAAATCAAAGAAATCGTTAAATGGGTGTGTTTGTTATTTTTTTATATATAATT
122602492 TTAAGCATT
66 TTAAGCATT
122602501 GGATAAGGAACTTAAATCAAAGAAATCGTTAAATGGGTGTGTTTGTTATTTTTTTATATATAATT
1 GGATAAGGAACTTAAATCAAAGAAATCGTTAAATGGGTGTGTTTGTTATTTTTTTATATATAATT
122602566 ACATGCATTC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
74 64 1.00
ACGTcount: A:0.35, C:0.05, G:0.19, T:0.42
Consensus pattern (74 bp):
GGATAAGGAACTTAAATCAAAGAAATCGTTAAATGGGTGTGTTTGTTATTTTTTTATATATAATT
TTAAGCATT
Found at i:122615212 original size:18 final size:18
Alignment explanation
Indices: 122615184--122615218 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
122615174 CATTTTATAT
122615184 TTTTTTATT-AATTTAAA
1 TTTTTTATTAAATTTAAA
122615201 TTTTTTAGTTAAATTTAA
1 TTTTTTA-TTAAATTTAA
122615219 TCATTAATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 2 0.12
19 7 0.44
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (18 bp):
TTTTTTATTAAATTTAAA
Found at i:122616709 original size:40 final size:40
Alignment explanation
Indices: 122616664--122616743 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
122616654 GCTTGAGTGT
*
122616664 AAGCTATAGAGTTGATCATGGGTCTTGTTCTCTTATTGCC
1 AAGCTATAGAGTTGATCATAGGTCTTGTTCTCTTATTGCC
* *
122616704 AAGCTATGGAGTTGATCGTAGGTCTTGTTCTCTTATTGCC
1 AAGCTATAGAGTTGATCATAGGTCTTGTTCTCTTATTGCC
122616744 CATTGCCTTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.19, C:0.17, G:0.24, T:0.40
Consensus pattern (40 bp):
AAGCTATAGAGTTGATCATAGGTCTTGTTCTCTTATTGCC
Found at i:122630494 original size:8 final size:8
Alignment explanation
Indices: 122630458--122630534 Score: 57
Period size: 8 Copynumber: 9.1 Consensus size: 8
122630448 ATTGTTTTGA
122630458 AAATATAT
1 AAATATAT
122630466 AAA-ATAT
1 AAATATAT
*
122630473 AAACTTATAA
1 AAA--TATAT
*
122630483 AAATATTT
1 AAATATAT
122630491 AAATATAT
1 AAATATAT
*
122630499 AAAAACCTAT
1 AAATA--TAT
122630509 AATATATAT
1 AA-ATATAT
*
122630518 AAATTTAT
1 AAATATAT
*
122630526 AAAAATAT
1 AAATATAT
122630534 A
1 A
122630535 TTTGTATAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
7 7 0.13
8 29 0.54
9 5 0.09
10 11 0.20
11 2 0.04
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (8 bp):
AAATATAT
Found at i:122630526 original size:17 final size:17
Alignment explanation
Indices: 122630478--122630527 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
122630468 AATATAAACT
122630478 TATA-AAAATATTTA-AA
1 TATATAAAA-ATTTATAA
**
122630494 TATATAAAAACCTATAA
1 TATATAAAAATTTATAA
*
122630511 TATATATAAATTTATAA
1 TATATAAAAATTTATAA
122630528 AAATATATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
16 7 0.26
17 20 0.74
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (17 bp):
TATATAAAAATTTATAA
Found at i:122631967 original size:17 final size:17
Alignment explanation
Indices: 122631947--122631980 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
122631937 AAATAGATTT
122631947 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
*
122631964 TTAATTAAAATTTTTAA
1 TTAATTAAAAATTTTAA
122631981 ACCTAAACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:122632140 original size:17 final size:17
Alignment explanation
Indices: 122632120--122632153 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
122632110 AGGTTTAGGT
122632120 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
*
122632137 TTAAAATTTTTAATTAA
1 TTAAAAATTTTAATTAA
122632154 AAATCTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:122638025 original size:13 final size:14
Alignment explanation
Indices: 122638007--122638036 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
122637997 TCTAGTTAGG
122638007 AAAAAAAAAGAA-A
1 AAAAAAAAAGAAGA
122638020 AAAAAAAAAGAAGA
1 AAAAAAAAAGAAGA
122638034 AAA
1 AAA
122638037 GTGCAAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAGAAGA
Found at i:122641907 original size:20 final size:22
Alignment explanation
Indices: 122641871--122641915 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
122641861 TTACCCCAAA
*
122641871 CTCTCAAACCATTTTACT-TTT
1 CTCTCAAAACATTTTACTCTTT
122641892 CTCTCAAAAC-TTTTACTCTTT
1 CTCTCAAAACATTTTACTCTTT
122641913 CTC
1 CTC
122641916 ACTTTCCCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (22 bp):
CTCTCAAAACATTTTACTCTTT
Found at i:122643623 original size:40 final size:40
Alignment explanation
Indices: 122643578--122643744 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
122643568 CGGAATATAA
122643578 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
122643618 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
122643658 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
122643698 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
122643737 CCGGATAT
1 CCGGATAT
122643745 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:122643728 original size:80 final size:79
Alignment explanation
Indices: 122643594--122643744 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
122643584 ATAATCACGT
*
122643594 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
122643659 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
122643674 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
122643737 CCGGATAT
64 CCGGATAT
122643745 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:122651640 original size:40 final size:40
Alignment explanation
Indices: 122651595--122651761 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
122651585 CGGAATATAA
122651595 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
122651635 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
122651675 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
122651715 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
122651754 CCGGATAT
1 CCGGATAT
122651762 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:122651745 original size:80 final size:79
Alignment explanation
Indices: 122651611--122651761 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
122651601 ATAATCACGT
*
122651611 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
122651676 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
122651691 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
122651754 CCGGATAT
64 CCGGATAT
122651762 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:122654078 original size:3 final size:3
Alignment explanation
Indices: 122654070--122654114 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
122654060 ACATGAAAGG
122654070 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
122654115 TAAAACACTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:122656196 original size:14 final size:15
Alignment explanation
Indices: 122656163--122656198 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
122656153 AAATTTTAAG
122656163 AAAAATAAATATTGT
1 AAAAATAAATATTGT
* *
122656178 AAAAATAGATATTTT
1 AAAAATAAATATTGT
122656193 AAAAAT
1 AAAAAT
122656199 CTTACTTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (15 bp):
AAAAATAAATATTGT
Found at i:122661390 original size:20 final size:20
Alignment explanation
Indices: 122661367--122661405 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
122661357 AAATTTATTT
122661367 TTCAAAAAATATTTTTTTGG
1 TTCAAAAAATATTTTTTTGG
* *
122661387 TTCAAATAATTTTTTTTTG
1 TTCAAAAAATATTTTTTTG
122661406 TAAAATTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.05, G:0.08, T:0.56
Consensus pattern (20 bp):
TTCAAAAAATATTTTTTTGG
Found at i:122662404 original size:25 final size:22
Alignment explanation
Indices: 122662358--122662418 Score: 86
Period size: 25 Copynumber: 2.6 Consensus size: 22
122662348 ATTTCTGAAA
122662358 TTTTTGTTACATGTTTTTCATG
1 TTTTTGTTACATGTTTTTCATG
122662380 TTTTTGTTACAGGTGGTTTTTCATG
1 TTTTTGTTACA--T-GTTTTTCATG
*
122662405 TTTATGTTACATGT
1 TTTTTGTTACATGT
122662419 AAGTTTAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
22 13 0.37
23 1 0.03
24 1 0.03
25 20 0.57
ACGTcount: A:0.15, C:0.08, G:0.18, T:0.59
Consensus pattern (22 bp):
TTTTTGTTACATGTTTTTCATG
Found at i:122666374 original size:17 final size:17
Alignment explanation
Indices: 122666352--122666386 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
122666342 GTTTAACGAA
122666352 ACATGATAGAGAATTTG
1 ACATGATAGAGAATTTG
*
122666369 ACATGATAGGGAATTTG
1 ACATGATAGAGAATTTG
122666386 A
1 A
122666387 TGTTGTAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.40, C:0.06, G:0.26, T:0.29
Consensus pattern (17 bp):
ACATGATAGAGAATTTG
Found at i:122672632 original size:34 final size:34
Alignment explanation
Indices: 122672588--122672662 Score: 84
Period size: 34 Copynumber: 2.2 Consensus size: 34
122672578 TTAAGATGAC
*
122672588 TATATATAAAAT-TTTAA-TAAATAATAATATATAAAA
1 TATAT-TAAAATATTAAATTAAA-AA-AATATA-AAAA
122672624 T-TATTAAAATATTAAATTAAAAAAATATAAAAA
1 TATATTAAAATATTAAATTAAAAAAATATAAAAA
122672657 TATATT
1 TATATT
122672663 TTTAATTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
33 5 0.14
34 16 0.46
35 9 0.26
36 5 0.14
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (34 bp):
TATATTAAAATATTAAATTAAAAAAATATAAAAA
Found at i:122674443 original size:56 final size:56
Alignment explanation
Indices: 122674356--122674499 Score: 189
Period size: 56 Copynumber: 2.6 Consensus size: 56
122674346 AGGCATCGAC
* * * * *
122674356 ATGTGAATCCGATATATGTATGCGAGAAAGACCATGTTTTATACGTCGACATAGAT
1 ATGTGAATCTGATATATGTGTGCGAGTAAGACCACGTTTTATACATCGACATAGAT
* * *
122674412 ATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTTTTATACATTGACATCGAT
1 ATGTGAATCTGATATATGTGTGCGAGTAAGACCACGTTTTATACATCGACATAGAT
* * *
122674468 ATGTGACTCTAATATATGTGTTCGAGTAAGAC
1 ATGTGAATCTGATATATGTGTGCGAGTAAGAC
122674500 TTTGTCTGGG
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 77 1.00
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (56 bp):
ATGTGAATCTGATATATGTGTGCGAGTAAGACCACGTTTTATACATCGACATAGAT
Found at i:122680138 original size:15 final size:15
Alignment explanation
Indices: 122680112--122680150 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
122680102 AATAAGAATA
*
122680112 AAAATAAATAATATGT
1 AAAAT-AATAATATAT
122680128 AAAATAATAATATAT
1 AAAATAATAATATAT
*
122680143 AAATTAAT
1 AAAATAAT
122680151 TTTAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
AAAATAATAATATAT
Found at i:122681915 original size:46 final size:44
Alignment explanation
Indices: 122681811--122681918 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
122681801 TGTCTTTGAC
** * * *
122681811 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
122681855 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
122681901 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
122681919 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:122688060 original size:46 final size:44
Alignment explanation
Indices: 122687956--122688063 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
122687946 TGTCTTTGAC
** * * *
122687956 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
122688000 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
122688046 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
122688064 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:122691141 original size:19 final size:18
Alignment explanation
Indices: 122691077--122691154 Score: 70
Period size: 19 Copynumber: 4.3 Consensus size: 18
122691067 ATGTATAATA
*
122691077 TAAAAATTTATAAAAAAT
1 TAAAAATTTATAAAAAAC
* * *
122691095 TTAAAACTCAT-AAAAA-
1 TAAAAATTTATAAAAAAC
* *
122691111 TATAAATATATAAAATAAC
1 TAAAAATTTATAAAA-AAC
122691130 TAAAAATTTATAAAATAAC
1 TAAAAATTTATAAAA-AAC
122691149 TAAAAA
1 TAAAAA
122691155 GCACCTTTAG
Statistics
Matches: 47, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
16 6 0.13
17 8 0.17
18 10 0.21
19 23 0.49
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAAAATTTATAAAAAAC
Found at i:122692595 original size:3 final size:3
Alignment explanation
Indices: 122692571--122692724 Score: 89
Period size: 3 Copynumber: 50.7 Consensus size: 3
122692561 TGGATTGCTA
* * * * *
122692571 ATT AAT ATT ATC ATT GTT ATT ATT ATT CTT ACT ATT ATAT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT
* * * * * * *
122692617 GTT ATT ATT CTT ACT ATT ATAT GTT ATT ATT ATT ATC GTT ACT ATT
1 ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT
* * *
122692663 ATT -TAT ATAC ATT ATT ATT ATT ACT ATT ATT -TT CACT ATT ATT ATT
1 ATT AT-T AT-T ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT
* *
122692709 -TT ACT ATT ATT TTT AT
1 ATT ATT ATT ATT ATT AT
122692725 ATACTATAGT
Statistics
Matches: 110, Mismatches: 34, Indels: 14
0.70 0.22 0.09
Matches are distributed among these distances:
2 5 0.05
3 95 0.86
4 10 0.09
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:122692629 original size:28 final size:28
Alignment explanation
Indices: 122692587--122692718 Score: 148
Period size: 28 Copynumber: 4.8 Consensus size: 28
122692577 ATTATCATTG
122692587 TTATTATTATTCTTACTATTATATATTA
1 TTATTATTATTCTTACTATTATATATTA
* *
122692615 TTGTTATTATTCTTACTATTATATGTTA
1 TTATTATTATTCTTACTATTATATATTA
*
122692643 TTATTATTA-TCGTTACTATTATTTA-TA
1 TTATTATTATTC-TTACTATTATATATTA
* *
122692670 TACATTATTATTATTACTATTAT-T-TTCA
1 T-TATTATTATTCTTACTATTATATATT-A
*
122692698 CTATTATTATT-TTACTATTAT
1 TTATTATTATTCTTACTATTAT
122692719 TTTTATATAC
Statistics
Matches: 90, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
26 10 0.11
27 16 0.18
28 63 0.70
29 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (28 bp):
TTATTATTATTCTTACTATTATATATTA
Found at i:122696561 original size:19 final size:19
Alignment explanation
Indices: 122696537--122696582 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
122696527 CTCTTTAGTC
*
122696537 TTGCATT-CATCTCATGCAT
1 TTGCATTACATCGCAT-CAT
122696556 TTGCATTACATCGCATCAT
1 TTGCATTACATCGCATCAT
*
122696575 GTGCATTA
1 TTGCATTA
122696583 AACTTCATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (19 bp):
TTGCATTACATCGCATCAT
Found at i:122699034 original size:46 final size:46
Alignment explanation
Indices: 122698984--122699257 Score: 343
Period size: 46 Copynumber: 6.0 Consensus size: 46
122698974 GCTCTCTGAT
** * * * *
122698984 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTAAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
122699030 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
122699076 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATAAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * *
122699122 GGGAAATGAATAAGACCATGGTTGAAAGATACTATGGTAGCATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
122699168 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
122699214 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
122699258 TCAAAGATAA
Statistics
Matches: 203, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.00
46 202 1.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:122699137 original size:92 final size:92
Alignment explanation
Indices: 122698980--122699257 Score: 385
Period size: 92 Copynumber: 3.0 Consensus size: 92
122698970 GAGTGCTCTC
** * * * * *
122698980 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTAATATGAAATGTGTAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATAACAGGAAATGAGTAAGA
* *
122699045 CCATGGTTGAAAGATACCATGGCAACG
66 CCATGGTTGAAAGATACTATGGCAACA
* *
122699072 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATAACGGGAAATGAATAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATAACAGGAAATGAGTAAGA
* *
122699137 CCATGGTTGAAAGATACTATGGTAGCA
66 CCATGGTTGAAAGATACTATGGCAACA
* * *
122699164 TGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATAACAGGAAATGAGTAAGA
* * *
122699229 CCATAGTTGAAAGACACTATGGCATCA
66 CCATGGTTGAAAGATACTATGGCAACA
122699256 TG
1 TG
122699258 TCAAAGATAA
Statistics
Matches: 164, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
92 164 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (92 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATAACAGGAAATGAGTAAGA
CCATGGTTGAAAGATACTATGGCAACA
Found at i:122704258 original size:26 final size:26
Alignment explanation
Indices: 122704222--122704305 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
122704212 CATGAAATTC
122704222 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
122704248 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
122704274 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
122704300 TTATCA
1 TTATCA
122704306 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:122711003 original size:44 final size:43
Alignment explanation
Indices: 122710954--122711186 Score: 122
Period size: 44 Copynumber: 5.3 Consensus size: 43
122710944 AGCCTTAATC
122710954 CCCTAAGCAGTAGGGCAACAGGCTGAGAATTACAGATCTTATCT
1 CCCTAAGCAGTAGGG-AACAGGCTGAGAATTACAGATCTTATCT
** * * * * * * *
122710998 CCCTAAGCAGTAGTGGAGTA-GAT-CGAA-GACGGTGAGCTTTAACC
1 CCCTAAGCAGTAG-GGAACAGGCTGAGAATTAC--AGATC-TTATCT
*
122711042 CCCTAAGCAGTAGGGTAATAGGCTGA-AGATTACAGATCTTATCT
1 CCCTAAGCAGTAGGG-AACAGGCTGAGA-ATTACAGATCTTATCT
* * * * * * * *
122711086 CCCTAAGCAGTAATGGAGCA-GAT-CGAA-GACGATGAGCCTTAACC
1 CCCTAAGCAGT-AGGGAACAGGCTGAGAATTAC-A-GA-TCTTATCT
*
122711130 CCCTAAGCAGTAGGGCAACAGGCTGA-AGATTACAGATATTATCT
1 CCCTAAGCAGTAGGG-AACAGGCTGAGA-ATTACAGATCTTATCT
122711174 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
122711187 TAGAGCAGAT
Statistics
Matches: 135, Mismatches: 35, Indels: 38
0.65 0.17 0.18
Matches are distributed among these distances:
41 4 0.03
42 5 0.04
43 15 0.11
44 88 0.65
45 16 0.12
46 3 0.02
47 4 0.03
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.21
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGAACAGGCTGAGAATTACAGATCTTATCT
Found at i:122711103 original size:88 final size:88
Alignment explanation
Indices: 122710944--122711899 Score: 1179
Period size: 88 Copynumber: 10.8 Consensus size: 88
122710934 AATCTCCACT
*
122710944 AGCCTTAATCCCCTAAGCAGTAGGGCAACAGGCTG-AGAATTACAGATCTTATCTCCCTAAGCAG
1 AGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCTGAAG-ATTACAGATCTTATCTCCCTAAGCAG
* *
122711008 TAGTGGAGTAGATCGAAGACGGTG
65 TAGTGGAGCAGATCGAAGACAGTG
* * *
122711032 AGCTTTAACCCCCTAAGCAGTAGGGTAATAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGT
*
122711097 AATGGAGCAGATCGAAGAC-GATG
66 AGTGGAGCAGATCGAAGACAG-TG
*
122711120 AGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCTGAAGATTACAGATATTATCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGT
*
122711185 AGTAGAGCAGATCGAAGACAGTG
66 AGTGGAGCAGATCGAAGACAGTG
* * * *
122711208 AGCCTTAACCCCCTAAGTAGTAGGGAAACAGGTTGAAGATTACAGATCTTATCTCCCTAAGTAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGT
* *
122711273 AGTGAAGCAGATCGAAGACGGTG
66 AGTGGAGCAGATCGAAGACAGTG
* * * *
122711296 AGCCTTAA-CCCCTAAGTAGTAGGGCAACAGGCTGGAA-ATTATAGATCTTATCTCCCTAAGTAA
1 AGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCT-GAAGATTACAGATCTTATCTCCCTAAGCAG
** *
122711359 TAGTGGAATAGATCGAAGACGGTG
65 TAGTGGAGCAGATCGAAGACAGTG
** * * * *
122711383 AGCCTTAACCCCCTAAATAGTGGGGCAACAGGCTGGAA-ATTATAGATCTTATCCCCCTAAGTAG
1 AGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCT-GAAGATTACAGATCTTATCTCCCTAAGCAG
122711447 TAGTGGAGCAGATCGAAGACAGTG
65 TAGTGGAGCAGATCGAAGACAGTG
* * * *
122711471 AGCCTTAACCCCCTAAGTAGTAGGGCAACAGACTGAATATTATAGATCTTATCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGT
*
122711536 AGTGGAGTAGATCGAAGACAGTG
66 AGTGGAGCAGATCGAAGACAGTG
* * * * *
122711559 AGCCTTAACCCCCCAACCAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCTCTAATCAAT
1 AGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGT
*
122711624 AATGGAGCAGATCGAAGACAGTG
66 AGTGGAGCAGATCGAAGACAGTG
* ** * *
122711647 AGCTTTGGCCCCCTAAGCAATAGAGCAACAGGCTGGAA-ATTACAGATCTTATCTCCCTAAGCAG
1 AGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCT-GAAGATTACAGATCTTATCTCCCTAAGCAG
* *
122711711 TAGTGGAGCAGATCGAAGACAATA
65 TAGTGGAGCAGATCGAAGACAGTG
* * * * * * * * * *
122711735 AGCTTTATCCCCCTAAGTAGTAGGGAAACAAGCTGAAAATGACAAACCACCTTATCTCCTTAAGC
1 AGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCTGAAGATTAC--A-GATCTTATCTCCCTAAGC
*
122711800 AGTAGTGGAGCAGATC-ACAGACGGTG
63 AGTAGTGGAGCAGATCGA-AGACAGTG
* * * * * * * * *
122711826 AGCCTTATCCTCCTAAGCAATAGGGAAACAGGCTGAAGAATACAAATCATGTCTCCCTAAGTAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGT
*
122711891 AGCGGAGCA
66 AGTGGAGCA
122711900 AATTGAAACA
Statistics
Matches: 763, Mismatches: 93, Indels: 24
0.87 0.11 0.03
Matches are distributed among these distances:
87 83 0.11
88 600 0.79
89 7 0.01
90 2 0.00
91 71 0.09
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (88 bp):
AGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCGAAGACAGTG
Found at i:122711202 original size:44 final size:45
Alignment explanation
Indices: 122710982--122711729 Score: 196
Period size: 44 Copynumber: 17.0 Consensus size: 45
122710972 CAGGCTGAGA
*
122710982 ATTACAGATCTTATCTCCCTAAGCAGTAGTGG-AGTAGATCGAAG
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAAGCAGATCGAAG
* * * * * * *
122711026 ACGGT-GAGCT-TTAACCCCCTAAGCAGTAG-GGTAA-TAG-GCTGAAG
1 A--TTACAGATCTTATCTCCCTAAGCAGTAGTGG-AAGCAGATC-GAAG
*
122711070 ATTACAGATCTTATCTCCCTAAGCAGTAATGG-AGCAGATCGAAG
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAAGCAGATCGAAG
** * * * * *
122711114 ACGA-TGAGCCTTAACCCCCTAAGCAGTAG-GGCAA-CAG-GCTGAAG
1 ATTACAGA-TCTTATCTCCCTAAGCAGTAGTGG-AAGCAGATC-GAAG
* *
122711158 ATTACAGATATTATCTCCCTAAGCAGTAGTAG-AGCAGATCGAAG
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAAGCAGATCGAAG
* ** * * * * * * *
122711202 A-CAGTGAGCCTTAACCCCCTAAGTAGTAG-GGAAACAGGTTGAAG
1 ATTACAGA-TCTTATCTCCCTAAGCAGTAGTGGAAGCAGATCGAAG
*
122711246 ATTACAGATCTTATCTCCCTAAGTAGTAGT-GAAGCAGATCGAAG
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAAGCAGATCGAAG
* * * * * * *
122711290 ACGGT-GAG-CCTTAAC-CCCTAAGTAGTAG-GGCAA-CAGGCTGGAA-
1 A--TTACAGATCTTATCTCCCTAAGCAGTAGTGG-AAGCA-GATCGAAG
* * * *
122711333 ATTATAGATCTTATCTCCCTAAGTAATAGTGGAA-TAGATCGAAG
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAAGCAGATCGAAG
* * * * * ** * * *
122711377 ACGGT-GAG-CCTTAACCCCCTAAATAGT-GGGGCAA-CAGGCTGGAA-
1 A--TTACAGATCTTATCTCCCTAAGCAGTAGTGG-AAGCA-GATCGAAG
* * *
122711421 ATTATAGATCTTATCCCCCTAAGTAGTAGTGG-AGCAGATCGAAG
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAAGCAGATCGAAG
* ** * * * * *
122711465 A-CAGTGAGCCTTAACCCCCTAAGTAGTAG-GGCAA-CAGA-CTGAAT
1 ATTACAGA-TCTTATCTCCCTAAGCAGTAGTGG-AAGCAGATC-GAAG
* *
122711509 ATTATAGATCTTATCTCCCTAAGCAGTAGTGG-AGTAGATCGAAG
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAAGCAGATCGAAG
* ** * * * * * *
122711553 A-CAGTGAGCCTTAACCCCCCAACCAGTAG-GGCAA-CAG-GCTGAAG
1 ATTACAGA-TCTTATCTCCCTAAGCAGTAGTGG-AAGCAGATC-GAAG
* * * *
122711597 ATTACAGATCTTATCTCTCTAATCAATAATGG-AGCAGATCGAAG
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAAGCAGATCGAAG
* ** * * * * * * *
122711641 A-CAGTGAGCTT-TGGCCCCCTAAGCAATAGAGCAA-CAGGCTGGAA-
1 ATTACAGATCTTAT--CTCCCTAAGCAGTAGTGGAAGCA-GATCGAAG
122711685 ATTACAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAG
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAAGCAGATCGAAG
122711729 A
1 A
122711730 CAATAAGCTT
Statistics
Matches: 495, Mismatches: 144, Indels: 130
0.64 0.19 0.17
Matches are distributed among these distances:
41 1 0.00
42 5 0.01
43 81 0.16
44 349 0.71
45 55 0.11
46 4 0.01
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (45 bp):
ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAAGCAGATCGAAG
Done.