Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 399 of 433
Found at i:123957892 original size:31 final size:31
Alignment explanation
Indices: 123957854--123957915 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
123957844 GAACCAAAAT
*
123957854 TTCAAAAAATACAAAAATTAAAATTAATCAA
1 TTCAAAAAATACAAAAACTAAAATTAATCAA
* * *
123957885 TTCAAAAAATATAAGAACTAAAATTGATCAA
1 TTCAAAAAATACAAAAACTAAAATTAATCAA
123957916 AATAAAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.61, C:0.10, G:0.03, T:0.26
Consensus pattern (31 bp):
TTCAAAAAATACAAAAACTAAAATTAATCAA
Found at i:123969996 original size:46 final size:46
Alignment explanation
Indices: 123969731--123970004 Score: 388
Period size: 46 Copynumber: 6.0 Consensus size: 46
123969721 TTATCTTCGA
* * * * * *
123969731 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
** * *
123969777 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
123969823 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
123969869 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACATATTTGATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
123969915 CATGTTGCCATGGTATTTTTCAACAATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
123969961 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACATATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
123970005 TTCAGAAAGC
Statistics
Matches: 206, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 3 0.01
46 203 0.99
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:123972128 original size:11 final size:11
Alignment explanation
Indices: 123972109--123972142 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
123972099 CCTTTTATAC
*
123972109 TAAATAAATAA
1 TAAAAAAATAA
123972120 TAAAAAAATAA
1 TAAAAAAATAA
123972131 T-AAAAAATAA
1 TAAAAAAATAA
123972141 TA
1 TA
123972143 TTTATCTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
TAAAAAAATAA
Found at i:123972137 original size:10 final size:10
Alignment explanation
Indices: 123972109--123972142 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
123972099 CCTTTTATAC
123972109 TAAATAAATAA
1 TAAA-AAATAA
123972120 TAAAAAAATAA
1 T-AAAAAATAA
123972131 TAAAAAATAA
1 TAAAAAATAA
123972141 TA
1 TA
123972143 TTTATCTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 11 0.50
11 8 0.36
12 3 0.14
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (10 bp):
TAAAAAATAA
Found at i:123972436 original size:30 final size:31
Alignment explanation
Indices: 123972368--123972426 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
123972358 CACCCTTAAA
** *
123972368 ATATTTACACTATTAGTCCTTTAAATTTTTC
1 ATATTTACACTATTAACCCCTTAAATTTTTC
123972399 ATATTTACACT-TTAACCCCTTAAATTTT
1 ATATTTACACTATTAACCCCTTAAATTTT
123972427 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.31, C:0.19, G:0.02, T:0.49
Consensus pattern (31 bp):
ATATTTACACTATTAACCCCTTAAATTTTTC
Found at i:123981536 original size:12 final size:11
Alignment explanation
Indices: 123981504--123981545 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
123981494 TCTTTCTAGG
123981504 TTTTCTTTTCT
1 TTTTCTTTTCT
*
123981515 TTTT-TGTTCT
1 TTTTCTTTTCT
123981525 TGTTTCTTTTCTT
1 T-TTTCTTTTC-T
123981538 TTTTCTTT
1 TTTTCTTT
123981546 GAAAACGGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 6 0.23
11 7 0.27
12 11 0.42
13 2 0.08
ACGTcount: A:0.00, C:0.14, G:0.05, T:0.81
Consensus pattern (11 bp):
TTTTCTTTTCT
Found at i:123985665 original size:41 final size:41
Alignment explanation
Indices: 123985619--123985699 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
123985609 AGATACCCCA
*
123985619 AAGTAATTAGATGAAAGTGTAATTATTAGTATAGAAATTAC
1 AAGTAATTAGATGAAAGTGTAAATATTAGTATAGAAATTAC
123985660 AAGTAATTAGATGAAAGTGTAAATATTAGTATAGAAATTA
1 AAGTAATTAGATGAAAGTGTAAATATTAGTATAGAAATTA
123985700 TACCTTTTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.48, C:0.01, G:0.17, T:0.33
Consensus pattern (41 bp):
AAGTAATTAGATGAAAGTGTAAATATTAGTATAGAAATTAC
Found at i:123989419 original size:14 final size:15
Alignment explanation
Indices: 123989400--123989435 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
123989390 AAAACAATAG
123989400 AAAACATTTTCC-TT
1 AAAACATTTTCCTTT
123989414 AAAACATTTTCCTTT
1 AAAACATTTTCCTTT
123989429 AAAACAT
1 AAAACAT
123989436 CCTTATACCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (15 bp):
AAAACATTTTCCTTT
Found at i:123989943 original size:41 final size:41
Alignment explanation
Indices: 123989897--123989979 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
123989887 AGATACTACA
123989897 AAGTAATTAGATGAAAGTGTAATTATTAGTATAGAAATTAC
1 AAGTAATTAGATGAAAGTGTAATTATTAGTATAGAAATTAC
123989938 AAGTAATTAGATGAAAGTGTAATTATTAGTATAGAAATTAC
1 AAGTAATTAGATGAAAGTGTAATTATTAGTATAGAAATTAC
123989979 A
1 A
123989980 CATTTTTATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.47, C:0.02, G:0.17, T:0.34
Consensus pattern (41 bp):
AAGTAATTAGATGAAAGTGTAATTATTAGTATAGAAATTAC
Found at i:123991260 original size:26 final size:26
Alignment explanation
Indices: 123991231--123991283 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
123991221 TCAAACATGC
123991231 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
123991257 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
123991283 A
1 A
123991284 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:123992800 original size:26 final size:26
Alignment explanation
Indices: 123992771--123992900 Score: 224
Period size: 26 Copynumber: 5.0 Consensus size: 26
123992761 ATTCCCATCT
*
123992771 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
123992797 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
*
123992823 TGGAATATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* *
123992849 TGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
123992875 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
123992901 ATTTGTACCA
Statistics
Matches: 99, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 99 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:123992844 original size:52 final size:52
Alignment explanation
Indices: 123992771--123992970 Score: 240
Period size: 52 Copynumber: 4.0 Consensus size: 52
123992761 ATTCCCATCT
*
123992771 TGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCA
* * *
123992823 TGGAATATTTACCTAACCCATTATCATGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCA
* *
123992875 TGGAACATTTACCTAACCCATTATC----AA-TTTGTACCATGA---ATTA--A
1 TGGAACATTTACCTAACCCATTATCATGGAACATT-TACC-TAACCCATTATCA
* *
123992919 TGGAATATTTACCTAACCCATTATCATGGAACATTTACCTAACTCATTATCA
1 TGGAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCA
123992971 ATTTGTACCA
Statistics
Matches: 126, Mismatches: 10, Indels: 24
0.79 0.06 0.15
Matches are distributed among these distances:
44 25 0.20
46 4 0.03
47 4 0.03
48 12 0.10
49 4 0.03
50 4 0.03
52 73 0.58
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.34
Consensus pattern (52 bp):
TGGAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCA
Found at i:123992954 original size:26 final size:26
Alignment explanation
Indices: 123992918--123992970 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
123992908 CCATGAATTA
*
123992918 ATGGAATATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
*
123992944 ATGGAACATTTACCTAACTCATTATC
1 ATGGAACATTTACCTAACCCATTATC
123992970 A
1 A
123992971 ATTTGTACCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.34
Consensus pattern (26 bp):
ATGGAACATTTACCTAACCCATTATC
Found at i:123992961 original size:70 final size:69
Alignment explanation
Indices: 123992771--123992991 Score: 275
Period size: 70 Copynumber: 3.1 Consensus size: 69
123992761 ATTCCCATCT
* *
123992771 TGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCATGGAATATT-TAC
1 TGGAATATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATC----AAT-TTGTAC
*
123992835 C-TAACCCATTATCA
61 CATGA---A-T-T-A
*
123992849 TGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCAATTTGTACCATGA
1 TGGAATATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCAATTTGTACCATGA
123992914 ATTAA
66 ATT-A
*
123992919 TGGAATATTTACCTAACCCATTATCATGGAACATTTACCTAACTCATTATCAATTTGTACCATGA
1 TGGAATATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCAATTTGTACCATGA
123992984 ATTA
66 ATTA
123992988 TGGA
1 TGGA
123992992 TATCAAGTGC
Statistics
Matches: 135, Mismatches: 6, Indels: 13
0.88 0.04 0.08
Matches are distributed among these distances:
69 5 0.04
70 68 0.50
71 1 0.01
72 1 0.01
73 2 0.01
74 7 0.05
75 2 0.01
78 49 0.36
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.34
Consensus pattern (69 bp):
TGGAATATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCAATTTGTACCATGA
ATTA
Found at i:123994319 original size:31 final size:27
Alignment explanation
Indices: 123994265--123994320 Score: 67
Period size: 27 Copynumber: 1.9 Consensus size: 27
123994255 GAATATATAC
*
123994265 TAAATAAAATAATATTCTTAATTAAAA
1 TAAATAAAATAATATTCTAAATTAAAA
123994292 TAAATAAATATATTATATTACTAAATTAA
1 TAAATAAA-ATA--ATATT-CTAAATTAA
123994321 TCCAATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 8 0.33
28 3 0.12
30 5 0.21
31 8 0.33
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (27 bp):
TAAATAAAATAATATTCTAAATTAAAA
Found at i:123997743 original size:41 final size:41
Alignment explanation
Indices: 123997693--123997771 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
123997683 ACTACAAAGC
*
123997693 AATTGGATGAAACTGTAATTATTAGTATAGAAATTACAAGT
1 AATTAGATGAAACTGTAATTATTAGTATAGAAATTACAAGT
* *
123997734 AATTAGATGAAAGTGTAATTATTAGTTTAGAAATTACA
1 AATTAGATGAAACTGTAATTATTAGTATAGAAATTACA
123997772 CTTTTTTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.35
Consensus pattern (41 bp):
AATTAGATGAAACTGTAATTATTAGTATAGAAATTACAAGT
Found at i:124001332 original size:20 final size:20
Alignment explanation
Indices: 124001288--124001339 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 20
124001278 TTAATTCTCT
124001288 CATA-ATTATTAT-TTTATA
1 CATATATTATTATATTTATA
* *
124001306 TATATATTATTATATTTTTA
1 CATATATTATTATATTTATA
124001326 CATATATTA-TATAT
1 CATATATTATTATAT
124001340 ACATATTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 3 0.10
19 13 0.45
20 13 0.45
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (20 bp):
CATATATTATTATATTTATA
Found at i:124001516 original size:20 final size:19
Alignment explanation
Indices: 124001491--124001533 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
124001481 ACATATTACC
124001491 AATTATAT-TATTTATGTTTA
1 AATTATATATA-TTAT-TTTA
124001511 AATTATATATATTATTTTA
1 AATTATATATATTATTTTA
124001530 AATT
1 AATT
124001534 TGTAAATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.36
20 12 0.55
21 2 0.09
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
AATTATATATATTATTTTA
Found at i:124001726 original size:7 final size:7
Alignment explanation
Indices: 124001714--124001738 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
124001704 TATTCTTGTC
124001714 ATTATAT
1 ATTATAT
124001721 ATTATAT
1 ATTATAT
124001728 ATTATAT
1 ATTATAT
124001735 ATTA
1 ATTA
124001739 AATACTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
ATTATAT
Found at i:124001971 original size:30 final size:30
Alignment explanation
Indices: 124001935--124001993 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
124001925 CTTCTATTTG
* *
124001935 TATATCATACATTATTTGATTATTATTTTT
1 TATATCATACATCATTTAATTATTATTTTT
*
124001965 TATATCATGCATCATTTAATTATTATTTT
1 TATATCATACATCATTTAATTATTATTTT
124001994 ATATGTTTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.58
Consensus pattern (30 bp):
TATATCATACATCATTTAATTATTATTTTT
Found at i:124005529 original size:15 final size:15
Alignment explanation
Indices: 124005495--124005539 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
124005485 ATATTCTTTA
124005495 TGCAT-TCATGCATT
1 TGCATCTCATGCATT
124005509 TGCATCTCATGGCATT
1 TGCATCTCAT-GCATT
*
124005525 T-CATCACAT-CATT
1 TGCATCTCATGCATT
124005538 TG
1 TG
124005540 TATTCAAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 5 0.19
14 5 0.19
15 11 0.41
16 6 0.22
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.40
Consensus pattern (15 bp):
TGCATCTCATGCATT
Found at i:124013837 original size:116 final size:117
Alignment explanation
Indices: 124013481--124014062 Score: 942
Period size: 116 Copynumber: 4.9 Consensus size: 117
124013471 GCCGCAGTAT
*
124013481 GCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTA
1 GCAGATCTAAC-TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT-GTATTCTTGTGTTTA
* ** *
124013546 CAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACATTCTCA-ATATA
64 CAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGATATG
124013599 GCAGATCTAAACTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTA
1 GCAGATCT-AACTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT-GTATTCTTGTGTTTA
*
124013664 CAA-GAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATAT-
64 CAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGATATG
124013716 GCAGATCTAACTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTG-ATTCTTGTGTTTACA
1 GCAGATCTAACTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGTATTCTTGTGTTTACA
124013780 AGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGATATG
66 AGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGATATG
124013832 GCAGATCTAACCTTCAGATGTTTATACTGAAGCA-ATCCAAGATGATTTG-ATTCTTGTGTTTAC
1 GCAGATCTAA-CTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGTATTCTTGTGTTTAC
* * *
124013895 AAGGAACAAATCGAGGATAGAGCAGATTTGACTCTCAGATGTTCTCAGACACATG
65 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAG--ATATG
*
124013950 GCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGACATTCTTGTGTTTA
1 GCAGATCTAA-CTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTG-TATTCTTGTGTTTA
*
124014015 CAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCA
64 CAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCA
124014063 ACAGACTCAA
Statistics
Matches: 443, Mismatches: 11, Indels: 17
0.94 0.02 0.04
Matches are distributed among these distances:
114 16 0.04
115 49 0.11
116 125 0.28
117 72 0.16
118 106 0.24
119 17 0.04
121 58 0.13
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (117 bp):
GCAGATCTAACTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGTATTCTTGTGTTTACA
AGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGATATG
Found at i:124015854 original size:20 final size:20
Alignment explanation
Indices: 124015827--124015879 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
124015817 TTAATTCTCT
124015827 CATA-ATTATTAT-TTTTATA
1 CATATATTATTATATTTT-TA
*
124015846 TATATATTATTATATTTTTA
1 CATATATTATTATATTTTTA
124015866 CATATATTA-TATAT
1 CATATATTATTATAT
124015880 ACATATTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 8 0.27
20 18 0.60
21 4 0.13
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (20 bp):
CATATATTATTATATTTTTA
Found at i:124023987 original size:83 final size:83
Alignment explanation
Indices: 124023843--124024040 Score: 256
Period size: 83 Copynumber: 2.4 Consensus size: 83
124023833 ATATGTTATG
** * *
124023843 CACTCACAACAAGT-GCAGTAACTATAAATATGTGGCTTATCCAAAAACCCAGTGGCGGTTTGTT
1 CACTCACAACAAGTGGCAGTAACT-GCAA-ATGTGGCTTATCCAAAAACCCAGTGACAGTTTGTT
124023907 TAATTTGCAACCATGTTGTA
64 TAATTTGCAACCATGTTGTA
* *
124023927 CACTTACAACAAGTGGCAGTAACTGCAAATGTGGCTTGT-CAACAAACCCAGTGACAGTTTGTTT
1 CACTCACAACAAGTGGCAGTAACTGCAAATGTGGCTTATCCAA-AAACCCAGTGACAGTTTGTTT
* *
124023991 AATTTGCAACTATGTTGTG
65 AATTTGCAACCATGTTGTA
* * *
124024010 CACTCACAACCAGTGGCAATAACAGCAAATG
1 CACTCACAACAAGTGGCAGTAACTGCAAATG
124024041 ATTTTATCTA
Statistics
Matches: 100, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
82 3 0.03
83 73 0.73
84 15 0.15
85 9 0.09
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (83 bp):
CACTCACAACAAGTGGCAGTAACTGCAAATGTGGCTTATCCAAAAACCCAGTGACAGTTTGTTTA
ATTTGCAACCATGTTGTA
Found at i:124026987 original size:23 final size:20
Alignment explanation
Indices: 124026959--124027018 Score: 66
Period size: 23 Copynumber: 2.8 Consensus size: 20
124026949 CTTATTACTG
124026959 TTATATCTATTTTATACATGTA
1 TTATATCT-TTTTATACA-GTA
*
124026981 TATATATACTTTTTATATAGTA
1 T-TATAT-CTTTTTATACAGTA
124027003 TTATTATCTTTTTATA
1 TTA-TATCTTTTTATA
124027019 TATTATGGTG
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
21 11 0.32
22 8 0.24
23 13 0.38
24 2 0.06
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (20 bp):
TTATATCTTTTTATACAGTA
Found at i:124027015 original size:21 final size:22
Alignment explanation
Indices: 124026960--124027021 Score: 74
Period size: 21 Copynumber: 2.8 Consensus size: 22
124026950 TTATTACTGT
*
124026960 TATATCTATTTTATACATGTATA
1 TATATCT-TTTTATATATGTATA
124026983 TATATACTTTTTATATA-GTAT-
1 TATAT-CTTTTTATATATGTATA
124027004 TATTATCTTTTTATATAT
1 TA-TATCTTTTTATATAT
124027022 TATGGTGCTT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
21 13 0.37
22 7 0.20
23 13 0.37
24 2 0.06
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.58
Consensus pattern (22 bp):
TATATCTTTTTATATATGTATA
Found at i:124027085 original size:18 final size:19
Alignment explanation
Indices: 124027047--124027088 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
124027037 TTTCACCTGC
*
124027047 TTATTACTTTATTTTAATA
1 TTATTACTTTATATTAATA
*
124027066 TTATTA-TTTATATTATTA
1 TTATTACTTTATATTAATA
124027084 TTATT
1 TTATT
124027089 CCTAATACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATTACTTTATATTAATA
Found at i:124028827 original size:27 final size:27
Alignment explanation
Indices: 124028787--124028842 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
124028777 ACGTTCTTCT
*
124028787 TGATCAAATTGTTGGTGGATATATCAG
1 TGATCAAATCGTTGGTGGATATATCAG
124028814 TGATCAAATCGTTGGTGGATATATCAG
1 TGATCAAATCGTTGGTGGATATATCAG
124028841 TG
1 TG
124028843 GTGAATTTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.09, G:0.27, T:0.36
Consensus pattern (27 bp):
TGATCAAATCGTTGGTGGATATATCAG
Found at i:124030950 original size:28 final size:29
Alignment explanation
Indices: 124030900--124030955 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
124030890 TTGAAATATT
124030900 TTTAAAACACTTTTTAAAGTTTT-TAAAG
1 TTTAAAACACTTTTTAAAGTTTTATAAAG
* *
124030928 TTTAAAATATTTTTTATAA-TTTTATAAA
1 TTTAAAACACTTTTTA-AAGTTTTATAAA
124030956 AAATTTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.52
Consensus pattern (29 bp):
TTTAAAACACTTTTTAAAGTTTTATAAAG
Found at i:124040217 original size:27 final size:27
Alignment explanation
Indices: 124040176--124040230 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
124040166 GAAAAATGTG
124040176 AAAGACTACCAAAGTATCGTCATTTGT
1 AAAGACTACCAAAGTATCGTCATTTGT
*
124040203 AAAGACTACCGAAGTATCGTCATTTGT
1 AAAGACTACCAAAGTATCGTCATTTGT
124040230 A
1 A
124040231 TTCCAAGGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (27 bp):
AAAGACTACCAAAGTATCGTCATTTGT
Found at i:124044740 original size:15 final size:15
Alignment explanation
Indices: 124044720--124044750 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
124044710 AGGTTATCAC
124044720 TTGTTTCTTAAACCT
1 TTGTTTCTTAAACCT
124044735 TTGTTTCTTAAACCT
1 TTGTTTCTTAAACCT
124044750 T
1 T
124044751 GCTGCTACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.06, T:0.55
Consensus pattern (15 bp):
TTGTTTCTTAAACCT
Found at i:124050084 original size:24 final size:25
Alignment explanation
Indices: 124050056--124050105 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
124050046 GCCATCAATA
124050056 TTTATATTATTTA-TT-AATTTGGCC
1 TTTAT-TTATTTAGTTAAATTTGGCC
*
124050080 TTTATTTTTTTAGTTAAATTTGGCC
1 TTTATTTATTTAGTTAAATTTGGCC
124050105 T
1 T
124050106 CAACTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 6 0.26
24 7 0.30
25 10 0.43
ACGTcount: A:0.22, C:0.08, G:0.10, T:0.60
Consensus pattern (25 bp):
TTTATTTATTTAGTTAAATTTGGCC
Found at i:124050120 original size:24 final size:24
Alignment explanation
Indices: 124050065--124050122 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
124050055 ATTTATATTA
**
124050065 TTTATT-AATTTGGCCTTTATTTT
1 TTTATTAAATTTGGCCTCAATTTT
124050088 TTTAGTTAAATTTGGCCTCAACTTTT
1 TTTA-TTAAATTTGGCCTCAA-TTTT
124050114 TTT-TTAAAT
1 TTTATTAAAT
124050123 GAATTTGACC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
23 4 0.13
24 8 0.27
25 11 0.37
26 7 0.23
ACGTcount: A:0.22, C:0.10, G:0.09, T:0.59
Consensus pattern (24 bp):
TTTATTAAATTTGGCCTCAATTTT
Found at i:124054307 original size:17 final size:16
Alignment explanation
Indices: 124054264--124054314 Score: 50
Period size: 19 Copynumber: 2.9 Consensus size: 16
124054254 TTTATTTATG
124054264 ATTTTTAATAATTTTT
1 ATTTTTAATAATTTTT
124054280 ATTTTGATAAT-ATTTTT
1 ATTTT--TAATAATTTTT
124054297 GAATTTTTAATTAATTTT
1 --ATTTTTAA-TAATTTT
124054315 CAAATAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
16 5 0.17
17 9 0.31
18 5 0.17
19 10 0.34
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (16 bp):
ATTTTTAATAATTTTT
Found at i:124057676 original size:53 final size:53
Alignment explanation
Indices: 124057596--124057705 Score: 211
Period size: 53 Copynumber: 2.1 Consensus size: 53
124057586 ATTCCTTATT
*
124057596 TTTACAAGGTAATAGGTATTATTTTAAGGACAATTTTATCTTTTCATATAAAA
1 TTTACAAGGTAATAGGTATTATTTTAAGAACAATTTTATCTTTTCATATAAAA
124057649 TTTACAAGGTAATAGGTATTATTTTAAGAACAATTTTATCTTTTCATATAAAA
1 TTTACAAGGTAATAGGTATTATTTTAAGAACAATTTTATCTTTTCATATAAAA
124057702 TTTA
1 TTTA
124057706 AAAATATCTA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (53 bp):
TTTACAAGGTAATAGGTATTATTTTAAGAACAATTTTATCTTTTCATATAAAA
Found at i:124057741 original size:21 final size:22
Alignment explanation
Indices: 124057717--124057768 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
124057707 AAATATCTAT
124057717 TATT-TTTCATAA-AAAAATAAA
1 TATTATTTC-TAATAAAAATAAA
*
124057738 TATTATTTCTAATTAAAAATATA
1 TATTATTTCTAA-TAAAAATAAA
124057761 TATTATTT
1 TATTATTT
124057769 TGAAGGTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 7 0.26
22 4 0.15
23 16 0.59
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (22 bp):
TATTATTTCTAATAAAAATAAA
Found at i:124057763 original size:23 final size:23
Alignment explanation
Indices: 124057703--124057768 Score: 78
Period size: 24 Copynumber: 2.8 Consensus size: 23
124057693 CATATAAAAT
* * *
124057703 TTAAAAATATCTATTATTTTTCA
1 TTAAAAATATATATTATTTCTAA
* *
124057726 TAAAAAAATAAATATTATTTCTAA
1 T-TAAAAATATATATTATTTCTAA
124057750 TTAAAAATATATATTATTT
1 TTAAAAATATATATTATTT
124057769 TGAAGGTAAT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
23 17 0.49
24 18 0.51
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.47
Consensus pattern (23 bp):
TTAAAAATATATATTATTTCTAA
Found at i:124062849 original size:10 final size:10
Alignment explanation
Indices: 124062834--124062918 Score: 61
Period size: 10 Copynumber: 8.4 Consensus size: 10
124062824 ATTATTAAAA
124062834 ATAATTTAAT
1 ATAATTTAAT
124062844 ATAATTTAAT
1 ATAATTTAAT
124062854 ATAA-TT-AT
1 ATAATTTAAT
*
124062862 -T-ATTAAAT
1 ATAATTTAAT
124062870 ATAATTTAAT
1 ATAATTTAAT
* *
124062880 AAAAATAATAATAT
1 -ATAAT--TTA-AT
124062894 ATAATTTAAT
1 ATAATTTAAT
*
124062904 CATATTTTAAT
1 -ATAATTTAAT
124062915 ATAA
1 ATAA
124062919 CTATTTTTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 18
0.69 0.10 0.21
Matches are distributed among these distances:
6 1 0.02
7 2 0.03
8 4 0.07
9 3 0.05
10 25 0.43
11 15 0.26
13 6 0.10
14 2 0.03
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (10 bp):
ATAATTTAAT
Found at i:124062939 original size:30 final size:30
Alignment explanation
Indices: 124062905--124062961 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
124062895 TAATTTAATC
124062905 ATATTTT-AATATAACTATTTTTATATTAAA
1 ATATTTTAAATAT-ACTATTTTTATATTAAA
**
124062935 ATATTTTAAATATTTTATTTTTATATT
1 ATATTTTAAATATACTATTTTTATATT
124062962 TTCTAAGTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.60
Consensus pattern (30 bp):
ATATTTTAAATATACTATTTTTATATTAAA
Found at i:124065768 original size:2 final size:2
Alignment explanation
Indices: 124065761--124065786 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
124065751 AAACTTACAA
124065761 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
124065787 TTAGAATAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:124066357 original size:15 final size:16
Alignment explanation
Indices: 124066337--124066370 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
124066327 TAAAAATAAT
*
124066337 ATAAAAT-ATTTAAAA
1 ATAAAATAAATTAAAA
124066352 ATAAAATAAATTAAAA
1 ATAAAATAAATTAAAA
124066368 ATA
1 ATA
124066371 TTCTCAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
ATAAAATAAATTAAAA
Found at i:124066895 original size:2 final size:2
Alignment explanation
Indices: 124066888--124066917 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
124066878 ATGAAGTATG
124066888 TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
124066918 TATTAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:124067043 original size:17 final size:16
Alignment explanation
Indices: 124066996--124067045 Score: 66
Period size: 15 Copynumber: 3.1 Consensus size: 16
124066986 GTCACGCCTA
*
124066996 TTAATTATAAATTA-T
1 TTAATTAAAAATTATT
*
124067011 TTAAATAAAAATTATT
1 TTAATTAAAAATTATT
124067027 TTAATTAAAATATTATT
1 TTAATTAAAA-ATTATT
124067044 TT
1 TT
124067046 TAATAAAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
15 12 0.40
16 10 0.33
17 8 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTAATTAAAAATTATT
Found at i:124067052 original size:17 final size:16
Alignment explanation
Indices: 124067006--124067057 Score: 70
Period size: 17 Copynumber: 3.2 Consensus size: 16
124066996 TTAATTATAA
*
124067006 ATTATTTAAATAAAA-
1 ATTATTTTAATAAAAT
124067021 ATTATTTTAATTAAAAT
1 ATTATTTTAA-TAAAAT
124067038 ATTATTTTTAATAAAAT
1 ATTA-TTTTAATAAAAT
124067055 ATT
1 ATT
124067058 TAAATTTCAC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
15 9 0.27
16 5 0.15
17 13 0.39
18 6 0.18
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTATTTTAATAAAAT
Found at i:124067525 original size:16 final size:15
Alignment explanation
Indices: 124067504--124067556 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 15
124067494 ATTATCTTTC
124067504 TATAACAATATGCTAT
1 TATAACAATAT-CTAT
* *
124067520 TATAACAATTATTTTT
1 TATAACAA-TATCTAT
124067536 CTATAACAATATACTAT
1 -TATAACAATAT-CTAT
124067553 TATA
1 TATA
124067557 CGAGACTTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
16 17 0.57
17 13 0.43
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.43
Consensus pattern (15 bp):
TATAACAATATCTAT
Found at i:124067531 original size:33 final size:33
Alignment explanation
Indices: 124067486--124067556 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
124067476 TATTATGGGT
* *
124067486 TTATAACGATTATCTTTCTATAACAATATGCTA
1 TTATAACAATTATCTTTCTATAACAATATACTA
*
124067519 TTATAACAATTATTTTTCTATAACAATATACTA
1 TTATAACAATTATCTTTCTATAACAATATACTA
124067552 TTATA
1 TTATA
124067557 CGAGACTTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.39, C:0.13, G:0.03, T:0.45
Consensus pattern (33 bp):
TTATAACAATTATCTTTCTATAACAATATACTA
Found at i:124067544 original size:17 final size:17
Alignment explanation
Indices: 124067487--124067545 Score: 68
Period size: 17 Copynumber: 3.5 Consensus size: 17
124067477 ATTATGGGTT
*
124067487 TATAACGATTATCTTTC
1 TATAACAATTATCTTTC
*
124067504 TATAACAA-TATGCTAT-
1 TATAACAATTAT-CTTTC
*
124067520 TATAACAATTATTTTTC
1 TATAACAATTATCTTTC
124067537 TATAACAAT
1 TATAACAAT
124067546 ATACTATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
16 13 0.37
17 22 0.63
ACGTcount: A:0.39, C:0.14, G:0.03, T:0.44
Consensus pattern (17 bp):
TATAACAATTATCTTTC
Found at i:124072281 original size:21 final size:21
Alignment explanation
Indices: 124072255--124072297 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
124072245 CCTCACGTGA
124072255 TGGTTTGATGGTTAAGAGTGT
1 TGGTTTGATGGTTAAGAGTGT
124072276 TGGTTTGATGGTTAAGAGTGT
1 TGGTTTGATGGTTAAGAGTGT
124072297 T
1 T
124072298 CATCATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.37, T:0.44
Consensus pattern (21 bp):
TGGTTTGATGGTTAAGAGTGT
Found at i:124075319 original size:17 final size:18
Alignment explanation
Indices: 124075291--124075325 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
124075281 TATTTCTATA
124075291 TTTTTTACTAAAATTTAT
1 TTTTTTACTAAAATTTAT
*
124075309 TTTTTTA-TAAATTTTAT
1 TTTTTTACTAAAATTTAT
124075326 AAATTTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTTTACTAAAATTTAT
Found at i:124075597 original size:97 final size:94
Alignment explanation
Indices: 124075432--124075676 Score: 316
Period size: 97 Copynumber: 2.5 Consensus size: 94
124075422 TAATTGAGTG
* * *
124075432 AAAAAAAGGCAGGGACTTAATTGCTTTTTTTCGAAAATGTTTGAGGGCCTTTTTTATGCACTTTG
1 AAAAAAAGGCAGGG-CTTAATTGCTTTTTTT-GAAAAAGTTTAAGGG-CTTTTTGATGCACTTTG
*
124075497 AAAGTTCAAGTGTCCAA-TTGAGTGCAAAAAAA
63 AAAGTTCAAGTGCCCAAGTT-AGTGCAAAAAAA
*
124075529 AAAAAAAGAGCAAGGGCTTAATTGCTTTTTTTGAAAAAGCTTAAGGGTCTTTTTGATGCA-TTGT
1 AAAAAAAG-GC-AGGGCTTAATTGCTTTTTTTGAAAAAGTTTAAGGG-CTTTTTGATGCACTT-T
*
124075593 GAAAGTTCAAGTGCCCAAGTTTGTGCAAAAAAA
62 GAAAGTTCAAGTGCCCAAGTTAGTGCAAAAAAA
* *
124075626 AAAAAAAGGTAGGAG-TTAATTGCTTTTTTTCAAAAAGTTTAAGGGCTTTTT
1 AAAAAAAGGCAGG-GCTTAATTGCTTTTTTTGAAAAAGTTTAAGGGCTTTTT
124075677 ACACCCTTAA
Statistics
Matches: 133, Mismatches: 10, Indels: 13
0.85 0.06 0.08
Matches are distributed among these distances:
94 6 0.05
95 31 0.23
96 4 0.03
97 68 0.51
98 20 0.15
99 4 0.03
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (94 bp):
AAAAAAAGGCAGGGCTTAATTGCTTTTTTTGAAAAAGTTTAAGGGCTTTTTGATGCACTTTGAAA
GTTCAAGTGCCCAAGTTAGTGCAAAAAAA
Found at i:124086858 original size:47 final size:47
Alignment explanation
Indices: 124086804--124086899 Score: 122
Period size: 47 Copynumber: 2.0 Consensus size: 47
124086794 CACCTAGCAC
* *
124086804 ACAATTTTAAATAGGGCTGATCCTGCTC-CTAATACTGCTATTTATTT
1 ACAATTTTAAATAGGGCTAATCCTACTCTC-AATACTGCTATTTATTT
* * * *
124086851 ACAATTTTAAATGGGGTTAATCCTACTCTCAATAGTGTTATTTATTT
1 ACAATTTTAAATAGGGCTAATCCTACTCTCAATACTGCTATTTATTT
124086898 AC
1 AC
124086900 TGTTTAGGTG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
47 41 0.98
48 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (47 bp):
ACAATTTTAAATAGGGCTAATCCTACTCTCAATACTGCTATTTATTT
Found at i:124090823 original size:28 final size:28
Alignment explanation
Indices: 124090783--124090840 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
124090773 TATTGTTAAG
124090783 AAAAATTTTAAAAGTATCAAATCAATTC
1 AAAAATTTTAAAAGTATCAAATCAATTC
124090811 AAAAATTTTAAAAGTATCAAATCAATTC
1 AAAAATTTTAAAAGTATCAAATCAATTC
124090839 AA
1 AA
124090841 GAGCTTAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.55, C:0.10, G:0.03, T:0.31
Consensus pattern (28 bp):
AAAAATTTTAAAAGTATCAAATCAATTC
Found at i:124092068 original size:9 final size:9
Alignment explanation
Indices: 124092054--124092114 Score: 77
Period size: 9 Copynumber: 6.8 Consensus size: 9
124092044 TAAGTATAAA
124092054 AATTAACCG
1 AATTAACCG
124092063 AATTAACCG
1 AATTAACCG
*
124092072 ATTTAACCG
1 AATTAACCG
* *
124092081 ATTTAAACG
1 AATTAACCG
* *
124092090 ATTTAACTG
1 AATTAACCG
124092099 AATTAACCG
1 AATTAACCG
124092108 AATTAAC
1 AATTAAC
124092115 AAAAAAAAAG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 46 1.00
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.30
Consensus pattern (9 bp):
AATTAACCG
Found at i:124096446 original size:17 final size:18
Alignment explanation
Indices: 124096422--124096457 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
124096412 TTTATATATT
*
124096422 ATTTTTTTGGTTAACCGA
1 ATTTTTTCGGTTAACCGA
124096440 ATTTTTTCGGTTAACCGA
1 ATTTTTTCGGTTAACCGA
124096458 CCTGTTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.14, G:0.17, T:0.47
Consensus pattern (18 bp):
ATTTTTTCGGTTAACCGA
Found at i:124106128 original size:3 final size:3
Alignment explanation
Indices: 124106120--124106165 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
124106110 ACATGAAGAC
124106120 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
124106166 GGAGATTAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:124106375 original size:5 final size:5
Alignment explanation
Indices: 124106365--124106409 Score: 54
Period size: 5 Copynumber: 9.0 Consensus size: 5
124106355 TGAAGGTGTA
* * * *
124106365 AAAAT AAAAT AAAAT AAAAT AAAAC AAAAT ATAGT TAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
124106410 TTCTAAAAGA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (5 bp):
AAAAT
Found at i:124106461 original size:2 final size:2
Alignment explanation
Indices: 124106454--124106493 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
124106444 TAAAAAGAAA
124106454 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
124106494 CGCGAATAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:124106644 original size:2 final size:2
Alignment explanation
Indices: 124106637--124106672 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
124106627 AGAAATTTTA
124106637 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
124106673 GAATAAAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:124108494 original size:45 final size:45
Alignment explanation
Indices: 124108429--124108639 Score: 169
Period size: 45 Copynumber: 4.7 Consensus size: 45
124108419 GGTGGCTTAA
* *
124108429 ATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCGCTGTCTTTG
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGATTCACTGTCTTTG
* * **
124108474 ATCTGCTCCACTGCATCTTCAGGGAGACAAGA-TCTACAATCTTT-
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGATTC-ACTGTCTTTG
* * * * * * * * **
124108518 AGCCTACTCCGCTACAACTTTAGGAAGATAAGA-TGA-TGGCTTAA
1 A-TCTGCTCCACTGCAACTTCAGGAAGACAAGATTCACTGTCTTTG
* * * * * *
124108562 ATCTACTTCACTGCAACTTCAGGAATACACGATTCACCGTCTTCG
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGATTCACTGTCTTTG
*
124108607 ATCTGCTCCACTGCAACTTCAGGGAGACAAGAT
1 ATCTGCTCCACTGCAACTTCAGGAAGACAAGAT
124108640 CTGTAATCTT
Statistics
Matches: 124, Mismatches: 37, Indels: 10
0.73 0.22 0.06
Matches are distributed among these distances:
43 26 0.21
44 7 0.06
45 91 0.73
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (45 bp):
ATCTGCTCCACTGCAACTTCAGGAAGACAAGATTCACTGTCTTTG
Found at i:124108650 original size:45 final size:44
Alignment explanation
Indices: 124108428--124108777 Score: 163
Period size: 45 Copynumber: 7.9 Consensus size: 44
124108418 TGGTGGCTTA
* * *
124108428 AATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCGCT-GTCTTT
1 AATCTGCTCCACTGCAACTTCAGGAAGACAAGATT-G-TAATCTTC
* * * ** *
124108473 GATCTGCTCCACTGCATCTTCAGGGAGACAAGATCTACAATCTTT
1 AATCTGCTCCACTGCAACTTCAGGAAGACAAGAT-TGTAATCTTC
** * * * * * *
124108518 AGCCTACTCCGCTACAACTTTAGGAAGATAAGA-TG--ATGGCTTA
1 AATCTGCTCCACTGCAACTTCAGGAAGACAAGATTGTAAT--CTTC
* * * * * *
124108561 AATCTACTTCACTGCAACTTCAGGAATACACGATT-CACCGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGAAGACAAGATTGTA--ATCTTC
* *
124108606 GATCTGCTCCACTGCAACTTCAGGGAGACAAGATCTGTAATCTTC
1 AATCTGCTCCACTGCAACTTCAGGAAGACAAGAT-TGTAATCTTC
* * * * * * * * * ** *
124108651 AACCTACTCTACTACAACTTTAGGGAGATAGGATGGT-GGCTTA
1 AATCTGCTCCACTGCAACTTCAGGAAGACAAGATTGTAATCTTC
* * * ** *
124108694 AATCTGCTTCACTGTAACTTCAGGAAGACACGATTTGCCATTTTC
1 AATCTGCTCCACTGCAACTTCAGGAAGACAAGA-TTGTAATCTTC
* *
124108739 GATCTGCTCCACTGCAACTTCAGGGAGACAAGATCTGTA
1 AATCTGCTCCACTGCAACTTCAGGAAGACAAGAT-TGTA
124108778 GAATTGGTTT
Statistics
Matches: 218, Mismatches: 73, Indels: 28
0.68 0.23 0.09
Matches are distributed among these distances:
41 2 0.01
43 54 0.25
44 6 0.03
45 152 0.70
46 2 0.01
47 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGAAGACAAGATTGTAATCTTC
Found at i:124108777 original size:133 final size:133
Alignment explanation
Indices: 124108348--124108774 Score: 597
Period size: 133 Copynumber: 3.2 Consensus size: 133
124108338 TTCAATCTAT
* * * * * * *
124108348 TCCACTGCAACTTCAAGGAGGCCAGACCTATAGTTTTTAACCTATTCCACTACAA-TTTAGGGAG
1 TCCACTGCAACTTCAGGGAGACAAGATCTATAATCTTTAACCTACTCCACTACAACTTTAGGGAG
* *
124108412 ATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCGCTGTCTTT-GAT
66 ATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACACGATTCGCCGT-TTTCGAT
124108476 CTGC
130 CTGC
* * * * *
124108480 TCCACTGCATCTTCAGGGAGACAAGATCTACAATCTTTAGCCTACTCCGCTACAACTTTAGGAAG
1 TCCACTGCAACTTCAGGGAGACAAGATCTATAATCTTTAACCTACTCCACTACAACTTTAGGGAG
* * * * * *
124108545 ATAAGATGATGGCTTAAATCTACTTCACTGCAACTTCAGGAATACACGATTCACCGTCTTCGATC
66 ATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACACGATTCGCCGTTTTCGATC
124108610 TGC
131 TGC
* * *
124108613 TCCACTGCAACTTCAGGGAGACAAGATCTGTAATCTTCAACCTACTCTACTACAACTTTAGGGAG
1 TCCACTGCAACTTCAGGGAGACAAGATCTATAATCTTTAACCTACTCCACTACAACTTTAGGGAG
* * *
124108678 ATAGGATGGTGGCTTAAATCTGCTTCACTGTAACTTCAGGAAGACACGATTTGCCATTTTCGATC
66 ATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACACGATTCGCCGTTTTCGATC
124108743 TGC
131 TGC
124108746 TCCACTGCAACTTCAGGGAGACAAGATCT
1 TCCACTGCAACTTCAGGGAGACAAGATCT
124108775 GTAGAATTGG
Statistics
Matches: 256, Mismatches: 37, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
132 46 0.18
133 210 0.82
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (133 bp):
TCCACTGCAACTTCAGGGAGACAAGATCTATAATCTTTAACCTACTCCACTACAACTTTAGGGAG
ATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACACGATTCGCCGTTTTCGATC
TGC
Found at i:124108859 original size:48 final size:48
Alignment explanation
Indices: 124108800--124108893 Score: 152
Period size: 48 Copynumber: 2.0 Consensus size: 48
124108790 TGTATCTATG
*
124108800 ATTAGGATGCTATGATCAAAATGAATCAAATACTCCTATCTAGATATA
1 ATTAGGATGCTATGATCAAAATGAATCAAATACTCCTAACTAGATATA
* * *
124108848 ATTAGGATGCTATTATCGAAATGAATCAAATGCTCCTAACTAGATA
1 ATTAGGATGCTATGATCAAAATGAATCAAATACTCCTAACTAGATA
124108894 CATTATGAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.31
Consensus pattern (48 bp):
ATTAGGATGCTATGATCAAAATGAATCAAATACTCCTAACTAGATATA
Found at i:124120215 original size:3 final size:3
Alignment explanation
Indices: 124120202--124120243 Score: 75
Period size: 3 Copynumber: 13.7 Consensus size: 3
124120192 AGACATAAAA
124120202 AAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
124120244 GGAGATTAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:124120453 original size:5 final size:5
Alignment explanation
Indices: 124120443--124120487 Score: 54
Period size: 5 Copynumber: 9.0 Consensus size: 5
124120433 TGAAGGTGTA
* * * *
124120443 AAAAT AAAAT AAAAT AAAAC AAAAC AAAAT ATAGT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
124120488 TTCTAAAAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:124122370 original size:23 final size:23
Alignment explanation
Indices: 124122344--124122396 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
124122334 TTGGTGGAAG
*
124122344 CATTCTGACACTACGGTGTAATT
1 CATTCTGACACTACGGTGCAATT
* ** *
124122367 CATTTTGGTATTACGGTGCAATT
1 CATTCTGACACTACGGTGCAATT
124122390 CATTCTG
1 CATTCTG
124122397 TAACACCTAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.40
Consensus pattern (23 bp):
CATTCTGACACTACGGTGCAATT
Found at i:124124146 original size:68 final size:68
Alignment explanation
Indices: 124124040--124124224 Score: 221
Period size: 68 Copynumber: 2.7 Consensus size: 68
124124030 CTTGGCAGAT
** *
124124040 TTCATATGCTGCCATA-CCCAACTATGGTCTTACACATTATGATCTCATGTTTACTGTCCTGA-C
1 TTCATATATTGCCATAGCCTAACTATGGTCTTACACATTATGATCTCATGTTTACTGTCC-GAGC
124124103 AAAC
65 AAAC
* * **
124124107 TTCATATATTTCCATAGCCTAACTATGGTCTTACACATTATGATCTCATGTTTACTGTGCGAGTG
1 TTCATATATTGCCATAGCCTAACTATGGTCTTACACATTATGATCTCATGTTTACTGTCCGAGCA
*
124124172 GAC
66 AAC
* * * * * *
124124175 TTTATATGTTGACATAGTCTAGCTATGGTCTTACACATTATGATGTCATG
1 TTCATATATTGCCATAGCCTAACTATGGTCTTACACATTATGATCTCATG
124124225 CACCTAAGAT
Statistics
Matches: 101, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
67 15 0.15
68 86 0.85
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (68 bp):
TTCATATATTGCCATAGCCTAACTATGGTCTTACACATTATGATCTCATGTTTACTGTCCGAGCA
AAC
Found at i:124127972 original size:14 final size:14
Alignment explanation
Indices: 124127953--124127986 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
124127943 CTAAACCTGA
124127953 AGCCCAACTACCCC
1 AGCCCAACTACCCC
124127967 AGCCCAACTACCCC
1 AGCCCAACTACCCC
124127981 AGCCCA
1 AGCCCA
124127987 TCTGCAACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.29, C:0.56, G:0.09, T:0.06
Consensus pattern (14 bp):
AGCCCAACTACCCC
Found at i:124128579 original size:22 final size:23
Alignment explanation
Indices: 124128554--124128596 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
124128544 CCGGAGCTCC
124128554 CTCCCTCTC-CCCTTTCTTTTCT
1 CTCCCTCTCTCCCTTTCTTTTCT
* *
124128576 CTCCCTTTCTCTCTTTCTTTT
1 CTCCCTCTCTCCCTTTCTTTT
124128597 TTTTCTTTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (23 bp):
CTCCCTCTCTCCCTTTCTTTTCT
Found at i:124129033 original size:3 final size:3
Alignment explanation
Indices: 124129027--124129087 Score: 86
Period size: 3 Copynumber: 20.0 Consensus size: 3
124129017 TTTTTCTTAT
* *
124129027 TTA TTA TTA TTA TTA TTA TTA GTA TTA TTA TTA TTA TTG TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
124129075 TTA CTA TGTA TTA
1 TTA TTA T-TA TTA
124129088 GTATACGTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
3 48 0.94
4 3 0.06
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:124129301 original size:26 final size:29
Alignment explanation
Indices: 124129270--124129328 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
124129260 TTTAATATAG
124129270 TATTAT-CT-TTTT-ACTATTA-TATTTAT
1 TATTATCCTATTTTCACTATTATTA-TTAT
*
124129296 TATTATCCTATTTTCACTGTTATTATTAT
1 TATTATCCTATTTTCACTATTATTATTAT
124129325 TATT
1 TATT
124129329 TTCATCATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 6 0.21
27 2 0.07
28 4 0.14
29 14 0.50
30 2 0.07
ACGTcount: A:0.25, C:0.10, G:0.02, T:0.63
Consensus pattern (29 bp):
TATTATCCTATTTTCACTATTATTATTAT
Found at i:124129339 original size:21 final size:22
Alignment explanation
Indices: 124129292--124129342 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 22
124129282 ACTATTATAT
*
124129292 TTATTATTATCCTATTTTCACTG
1 TTATTATTAT-CTATTTTCACTA
124129315 TTATTATTAT-TATTTTCA-TCA
1 TTATTATTATCTATTTTCACT-A
124129336 TTATTAT
1 TTATTAT
124129343 ACATATATGC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 1 0.04
21 15 0.58
23 10 0.38
ACGTcount: A:0.25, C:0.12, G:0.02, T:0.61
Consensus pattern (22 bp):
TTATTATTATCTATTTTCACTA
Found at i:124142158 original size:70 final size:71
Alignment explanation
Indices: 124141908--124142237 Score: 303
Period size: 70 Copynumber: 4.5 Consensus size: 71
124141898 GTTTTCCAAG
* * *
124141908 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTCAT
124141973 GTTTCA
66 GTTTCA
* * * * *
124141979 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTC-GGGCACGCTGAGGTATTTTCAATTTC-
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA-TTCA
124142042 TGCTTTTTAATTCA
65 TG-----T--TTCA
*
124142056 TGAAAATCAGCTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTG-GGTAATTTCAATT
1 --AAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
124142119 CATGTTTCA
63 CATGTTTCA
* ** ** *
124142128 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACC-CTGGGGTACGCTGAGGTAATTTCAATTCC
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-AAGACACGTTGAGGTAATTTCAATT--
* *
124142192 CAT-TAAATCT
63 CATGT--TTCA
* *
124142202 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
124142238 TGCGGCACGC
Statistics
Matches: 212, Mismatches: 26, Indels: 38
0.77 0.09 0.14
Matches are distributed among these distances:
69 1 0.00
70 56 0.26
71 51 0.24
72 5 0.02
73 3 0.01
74 35 0.17
75 1 0.00
77 4 0.02
78 5 0.02
79 44 0.21
80 7 0.03
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTCAT
GTTTCA
Found at i:124142178 original size:150 final size:145
Alignment explanation
Indices: 124141907--124142237 Score: 506
Period size: 150 Copynumber: 2.3 Consensus size: 145
124141897 TGTTTTCCAA
*
124141907 GAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTA
1 GAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTCA
*
124141972 TGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGCACGCTGAGGTATTTTCA
66 TGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGCACGCTGAGGTAATTTCA
** *
124142037 ATTTCTGCTTTTTAATTCAT
131 A-TTC--C-CATTAAATC-T
*
124142057 GAAAATCAGCTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTG-GGTAATTTCAATTCA
1 GAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTCA
* *
124142121 TGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCCTGGGGTACGCTGAGGTAATTTC
66 TGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAA-CCTCGGGCACGCTGAGGTAATTTC
124142186 AATTCCCATTAAATCT
130 AATTCCCATTAAATCT
124142202 -AAAATC-GACTCATATTGCGAGAGGTGAGTTGAGCCT
1 GAAAATCAG-CTCATATTGCGAGAGGTGAGTTGAGCCT
124142238 TGCGGCACGC
Statistics
Matches: 170, Mismatches: 9, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
143 1 0.01
144 33 0.19
145 1 0.01
146 6 0.04
147 1 0.01
149 57 0.34
150 71 0.42
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (145 bp):
GAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTCA
TGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGCACGCTGAGGTAATTTCA
ATTCCCATTAAATCT
Found at i:124142219 original size:74 final size:74
Alignment explanation
Indices: 124141908--124142261 Score: 257
Period size: 74 Copynumber: 4.8 Consensus size: 74
124141898 GTTTTCCAAG
* * * ** * *
124141908 AAAATCAGCTCATATTGCGAGAGGTGAGTTG-AGCCTCAAGACACGTTGAGGTAATTTCAATT--
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCCT-GGGGCACGCTGAGGTAATTTCAATTCC
* *
124141970 TATGT--TTCA
65 CAT-TAATTCT
* *
124141979 AAAATCAACTCATATTGCGAGAAGTGAGTTGAA-CCTCGGGCACGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCCTGGGGCACGCTGAGGTAATTTCAA-TTC-
**
124142043 GCTTTTTAATTCAT
64 -C-CATTAATTC-T
* * ** * *
124142057 GAAAATCAGCTCATATTGCGAG-AGATGAGTTG-AGCCTCAAGACACGTTG-GGTAATTTCAATT
1 -AAAATCAACTCATATTGCGAGAAG-TGAGTTGAACCCT-GGGGCACGCTGAGGTAATTTCAATT
*
124142119 --CATGT--TTCA
63 CCCAT-TAATTCT
*
124142128 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCCTGGGGTACGCTGAGGTAATTTCAATTCCC
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCCTGGGGCACGCTGAGGTAATTTCAATTCCC
*
124142193 ATTAAATCT
66 ATTAATTCT
* * * * * * *
124142202 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGCGGCACGCTAAGGTATTTTCAA
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCCTGGGGCACGCTGAGGTAATTTCAA
124142262 ATTCTATCTT
Statistics
Matches: 226, Mismatches: 35, Indels: 41
0.75 0.12 0.14
Matches are distributed among these distances:
70 51 0.23
71 53 0.23
72 5 0.02
73 4 0.02
74 55 0.24
75 1 0.00
76 2 0.01
77 3 0.01
78 5 0.02
79 40 0.18
80 7 0.03
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCCTGGGGCACGCTGAGGTAATTTCAATTCCC
ATTAATTCT
Found at i:124143398 original size:14 final size:14
Alignment explanation
Indices: 124143379--124143412 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
124143369 CTAAACCCGA
124143379 AGCCCAACTACCCC
1 AGCCCAACTACCCC
124143393 AGCCCAACTACCCC
1 AGCCCAACTACCCC
124143407 AGCCCA
1 AGCCCA
124143413 TCTGCAACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.29, C:0.56, G:0.09, T:0.06
Consensus pattern (14 bp):
AGCCCAACTACCCC
Found at i:124144002 original size:22 final size:23
Alignment explanation
Indices: 124143977--124144019 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
124143967 CCGGAGCTCC
124143977 CTCCCTCTC-CCCTTTCTTTTCT
1 CTCCCTCTCTCCCTTTCTTTTCT
* *
124143999 CTCCCTTTCTCTCTTTCTTTT
1 CTCCCTCTCTCCCTTTCTTTT
124144020 TTTTCTTTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (23 bp):
CTCCCTCTCTCCCTTTCTTTTCT
Found at i:124144457 original size:3 final size:3
Alignment explanation
Indices: 124144451--124144508 Score: 80
Period size: 3 Copynumber: 19.0 Consensus size: 3
124144441 TTTTTCTTGT
* *
124144451 TTA TTA TTA TTA TTA TTA GTA TTA TTA TTA TTA TTG TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
124144499 CTA TGTA TTA
1 TTA T-TA TTA
124144509 GTATACGTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
3 45 0.94
4 3 0.06
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:124144723 original size:26 final size:29
Alignment explanation
Indices: 124144692--124144750 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
124144682 TTTAATATAG
124144692 TATTAT-CT-TTTT-ACTATTA-TATTTAT
1 TATTATCCTATTTTCACTATTATTA-TTAT
*
124144718 TATTATCCTATTTTCACTGTTATTATTAT
1 TATTATCCTATTTTCACTATTATTATTAT
124144747 TATT
1 TATT
124144751 TTCATCATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 6 0.21
27 2 0.07
28 4 0.14
29 14 0.50
30 2 0.07
ACGTcount: A:0.25, C:0.10, G:0.02, T:0.63
Consensus pattern (29 bp):
TATTATCCTATTTTCACTATTATTATTAT
Found at i:124144761 original size:21 final size:22
Alignment explanation
Indices: 124144714--124144764 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 22
124144704 ACTATTATAT
*
124144714 TTATTATTATCCTATTTTCACTG
1 TTATTATTAT-CTATTTTCACTA
124144737 TTATTATTAT-TATTTTCA-TCA
1 TTATTATTATCTATTTTCACT-A
124144758 TTATTAT
1 TTATTAT
124144765 ACATATATGC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 1 0.04
21 15 0.58
23 10 0.38
ACGTcount: A:0.25, C:0.12, G:0.02, T:0.61
Consensus pattern (22 bp):
TTATTATTATCTATTTTCACTA
Found at i:124146814 original size:27 final size:27
Alignment explanation
Indices: 124146774--124146914 Score: 164
Period size: 27 Copynumber: 5.2 Consensus size: 27
124146764 AGGAAGCGTC
*
124146774 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
124146801 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
124146827 CTTGGTGGCTATGCCACAATTATCTGAT
1 C-TGGTGGCTCTGCCACAATTATCTGAT
* * * *
124146855 CTGGTGGTTCTGCTAC-ATATATTTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
124146882 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
124146909 CTGGTG
1 CTGGTG
124146915 ACTTCATCAC
Statistics
Matches: 96, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
26 11 0.11
27 80 0.83
28 5 0.05
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:124146857 original size:54 final size:54
Alignment explanation
Indices: 124146774--124146914 Score: 214
Period size: 54 Copynumber: 2.6 Consensus size: 54
124146764 AGGAAGCGTC
124146774 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
124146827 CTTGGTGGCTATGCCACAATTATCTGATCTGGTGGTTCTGCTACATATATTTGTT
1 C-TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
124146882 CTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
124146915 ACTTCATCAC
Statistics
Matches: 81, Mismatches: 4, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
53 7 0.09
54 72 0.89
55 2 0.02
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:124148841 original size:32 final size:31
Alignment explanation
Indices: 124148795--124148866 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
124148785 ACGAAGCAAC
* *
124148795 AATTTAACTCTTTTTAAAAATGTTGATGGCCA
1 AATTTAACTCTTTTTAAAAA-GTTGAAGACCA
* * **
124148827 AATTTAATTTTTTTTTTAAAGTTGAAGACCA
1 AATTTAACTCTTTTTAAAAAGTTGAAGACCA
124148858 AATTTAACT
1 AATTTAACT
124148867 TTAAAAAAGA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
31 17 0.52
32 16 0.48
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (31 bp):
AATTTAACTCTTTTTAAAAAGTTGAAGACCA
Found at i:124151566 original size:19 final size:20
Alignment explanation
Indices: 124151521--124151566 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
124151511 TTAACAAATC
124151521 CCAAAAACCAGATCTAAAGT
1 CCAAAAACCAGATCTAAAGT
*
124151541 CCGAAAA-CAG-TCTAATAGT
1 CCAAAAACCAGATCTAA-AGT
124151560 CCAAAAA
1 CCAAAAA
124151567 TCCATAAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 12 0.52
20 6 0.26
ACGTcount: A:0.50, C:0.24, G:0.11, T:0.15
Consensus pattern (20 bp):
CCAAAAACCAGATCTAAAGT
Found at i:124153719 original size:20 final size:21
Alignment explanation
Indices: 124153694--124153741 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
124153684 TGCATAATAG
*
124153694 GGGCACCGAA-GTGCAAACAA
1 GGGCACCGAATATGCAAACAA
* *
124153714 GGGCA-CAAATATGCAGACAA
1 GGGCACCGAATATGCAAACAA
124153734 GGGCACCG
1 GGGCACCG
124153742 TTGTATGAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 3 0.14
20 18 0.82
21 1 0.05
ACGTcount: A:0.38, C:0.25, G:0.31, T:0.06
Consensus pattern (21 bp):
GGGCACCGAATATGCAAACAA
Found at i:124156553 original size:22 final size:22
Alignment explanation
Indices: 124156528--124156569 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
124156518 AATGTATGTG
*
124156528 AAAAATTGAGATAATAAATATA
1 AAAAAATGAGATAATAAATATA
* *
124156550 AAAAAATGATATTATAAATA
1 AAAAAATGAGATAATAAATA
124156570 ATTAAAGTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (22 bp):
AAAAAATGAGATAATAAATATA
Found at i:124162802 original size:25 final size:25
Alignment explanation
Indices: 124162774--124162824 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
124162764 ATTGAAAATG
*
124162774 AGAAATCAAAAAGTAAAAAG-AAGAA
1 AGAAAGCAAAAA-TAAAAAGAAAGAA
*
124162799 AGAAAGGAAAAATAAAAAGAAAGAA
1 AGAAAGCAAAAATAAAAAGAAAGAA
124162824 A
1 A
124162825 AAGAAGAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.06
Consensus pattern (25 bp):
AGAAAGCAAAAATAAAAAGAAAGAA
Found at i:124162817 original size:17 final size:18
Alignment explanation
Indices: 124162783--124162832 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
124162773 GAGAAATCAA
*
124162783 AAAGTAAAAAGAAGAAAG
1 AAAGGAAAAAGAAGAAAG
*
124162801 AAAGGAAAAATAA-AAAG
1 AAAGGAAAAAGAAGAAAG
124162818 AAA-GAAAAAGAAGAA
1 AAAGGAAAAAGAAGAA
124162833 GAAGAAGAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 8 0.29
17 9 0.32
18 11 0.39
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.04
Consensus pattern (18 bp):
AAAGGAAAAAGAAGAAAG
Found at i:124165355 original size:244 final size:244
Alignment explanation
Indices: 124164905--124165344 Score: 607
Period size: 244 Copynumber: 1.8 Consensus size: 244
124164895 ACATACAAGC
* *
124164905 ATGCTAGTGATCAAAAGTATTTCATTACCTTTATTAATGATCATTTACAATACATGTATCTCTAA
1 ATGCTAGTGATAAAAAATATTTCATTACCTTTATTAATGATCATTTACAATACATGTATCTCTAA
* * * * * * *
124164970 TTTCTCCATCACAAAAGTGAGGCATTAGTTGCCTTTAAGGTATGCAAAACATTAGTAGAGAAATA
66 TTGCTCCATCACAAAACTAAGGCATTAGATGCCTTTAAGGTATACAAAACATAAGTAGAGAAACA
* * *
124165035 GTGTAAAAAGTAAACTAAAATTATGATATCAAACTAACAAGAATAAGAAATATGCTAAAAGGAGT
131 ATGCAAAAAGCAAACTAAAATTATGATATCAAACTAACAAGAATAAGAAATATGCTAAAAGGAGT
124165100 TCTAGAATTTTATACATCTTACACACAGACATTTGTTGCCTTAATATGT
196 TCTAGAATTTTATACATCTTACACACAGACATTTGTTGCCTTAATATGT
* *
124165149 ATGCTAGTGGTAAAAAATATTTCATTACCTTTATTGATGATC-TTT-CATGATACATGTATCT-T
1 ATGCTAGTGATAAAAAATATTTCATTACCTTTATTAATGATCATTTACA--ATACATGTATCTCT
* * * ** * *
124165211 CACTTGCTTCATCATAAAACTAATTCATTAGATGCTTTTAAGGTATACAAAGCATAAGTAGAGAA
64 -AATTGCTCCATCACAAAACTAAGGCATTAGATGCCTTTAAGGTATACAAAACATAAGTAGAGAA
* * * *
124165276 ACAATGCAAAAAGCAAACTAAGATTGTGATATTAGACTAACAAGAATAAGAAATATGCTAAAAGG
128 ACAATGCAAAAAGCAAACTAAAATTATGATATCAAACTAACAAGAATAAGAAATATGCTAAAAGG
124165341 AGTT
193 AGTT
124165345 TTGTAATTTT
Statistics
Matches: 168, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
242 2 0.01
243 4 0.02
244 162 0.96
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.32
Consensus pattern (244 bp):
ATGCTAGTGATAAAAAATATTTCATTACCTTTATTAATGATCATTTACAATACATGTATCTCTAA
TTGCTCCATCACAAAACTAAGGCATTAGATGCCTTTAAGGTATACAAAACATAAGTAGAGAAACA
ATGCAAAAAGCAAACTAAAATTATGATATCAAACTAACAAGAATAAGAAATATGCTAAAAGGAGT
TCTAGAATTTTATACATCTTACACACAGACATTTGTTGCCTTAATATGT
Found at i:124165941 original size:30 final size:30
Alignment explanation
Indices: 124165905--124165961 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
124165895 TTTCAGGATT
*
124165905 CACACGGGCAAGCCACACGCCCATGTGATC
1 CACACGGGCAAGCCACACACCCATGTGATC
124165935 CACACGGGCAAGCCACACACCCATGTG
1 CACACGGGCAAGCCACACACCCATGTG
124165962 CCAGCCTGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.40, G:0.23, T:0.09
Consensus pattern (30 bp):
CACACGGGCAAGCCACACACCCATGTGATC
Found at i:124170771 original size:30 final size:30
Alignment explanation
Indices: 124170736--124170795 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
124170726 TATTTTATTA
*
124170736 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
* *
124170766 TTAATTTTATTATTATTTTAGAGGTATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
124170796 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAAAGGCATTTG
Found at i:124171439 original size:21 final size:20
Alignment explanation
Indices: 124171399--124171438 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
124171389 AATTTGATTT
124171399 GACTCAAAAAATTTAAAAAA
1 GACTCAAAAAATTTAAAAAA
124171419 GACTCAAAAAATTTAAAAAA
1 GACTCAAAAAATTTAAAAAA
124171439 AATATTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.65, C:0.10, G:0.05, T:0.20
Consensus pattern (20 bp):
GACTCAAAAAATTTAAAAAA
Found at i:124171526 original size:35 final size:35
Alignment explanation
Indices: 124171481--124171550 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
124171471 CGAGTTGAAT
*
124171481 TTTTAAATTCAAATAACTCAAATGATTCAAATAAA
1 TTTTAAATTCAAATAACTCAAATAATTCAAATAAA
* *
124171516 TTTTGAATTCAAATAACTCGAATAATTCAAATAAA
1 TTTTAAATTCAAATAACTCAAATAATTCAAATAAA
124171551 CTAAATATCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.50, C:0.11, G:0.04, T:0.34
Consensus pattern (35 bp):
TTTTAAATTCAAATAACTCAAATAATTCAAATAAA
Found at i:124171557 original size:18 final size:18
Alignment explanation
Indices: 124171486--124171549 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 18
124171476 TGAATTTTTA
124171486 AATTCAAATAACTCAAAT
1 AATTCAAATAACTCAAAT
* * **
124171504 GATTCAAATAAAT--TTT
1 AATTCAAATAACTCAAAT
*
124171520 GAATTCAAATAACTCGAAT
1 -AATTCAAATAACTCAAAT
124171539 AATTCAAATAA
1 AATTCAAATAA
124171550 ACTAAATATC
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
16 1 0.03
17 11 0.31
18 22 0.63
19 1 0.03
ACGTcount: A:0.52, C:0.12, G:0.05, T:0.31
Consensus pattern (18 bp):
AATTCAAATAACTCAAAT
Found at i:124173216 original size:28 final size:28
Alignment explanation
Indices: 124173185--124173253 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
124173175 ATTTAGTCGA
*
124173185 ATATCATAAT-CAGAAACAGATACAGAAC
1 ATATCA-AATACAGAAACAAATACAGAAC
* **
124173213 ATATCAGATACAGTTACAAATACAGAAC
1 ATATCAAATACAGAAACAAATACAGAAC
*
124173241 ATATTAAATACAG
1 ATATCAAATACAG
124173254 TTACAAATTC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 2 0.06
28 32 0.94
ACGTcount: A:0.52, C:0.16, G:0.10, T:0.22
Consensus pattern (28 bp):
ATATCAAATACAGAAACAAATACAGAAC
Found at i:124173254 original size:28 final size:28
Alignment explanation
Indices: 124173204--124173266 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
124173194 TCAGAAACAG
*
124173204 ATACAGAACATATCAGATACAGTTACAA
1 ATACAGAACATATCAAATACAGTTACAA
*
124173232 ATACAGAACATATTAAATACAGTTACAA
1 ATACAGAACATATCAAATACAGTTACAA
*
124173260 ATTCAGA
1 ATACAGA
124173267 TACAAATGCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.51, C:0.16, G:0.10, T:0.24
Consensus pattern (28 bp):
ATACAGAACATATCAAATACAGTTACAA
Found at i:124173952 original size:63 final size:63
Alignment explanation
Indices: 124173854--124174013 Score: 191
Period size: 63 Copynumber: 2.5 Consensus size: 63
124173844 TACACACGGT
* * * * *
124173854 CGTGTGA-CTCAAATTCCAAAAACAGTGAGTTACACGACCTGGACACATGC-CTGTGTCTCTGGC
1 CGTGTGACCTTAAATT-C-AAAATAGTGAGTTACACGACCTAGACACACGCTC-GTGTCTCTAGC
124173917 C
63 C
*
124173918 CGTGTGACCTT-AATTCACAAATAGTGAGTTACACGGCCTAGACACACGCTCGTGTCTCTAGCC
1 CGTGTGACCTTAAATTCA-AAATAGTGAGTTACACGACCTAGACACACGCTCGTGTCTCTAGCC
* *
124173981 CGTGTGACTTTAAATTGAAAATAGTGAGTTACA
1 CGTGTGACCTTAAATTCAAAATAGTGAGTTACA
124174014 AGGCTTGCCA
Statistics
Matches: 84, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
62 1 0.01
63 64 0.76
64 17 0.20
65 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (63 bp):
CGTGTGACCTTAAATTCAAAATAGTGAGTTACACGACCTAGACACACGCTCGTGTCTCTAGCC
Found at i:124176559 original size:22 final size:22
Alignment explanation
Indices: 124176515--124176559 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
124176505 TGTCTTCAGG
* * * *
124176515 AATTATCAGCATTCTTTGGAAT
1 AATTACCACCATTCTTCGAAAT
124176537 AATTACCACCATTCTTCGAAAT
1 AATTACCACCATTCTTCGAAAT
124176559 A
1 A
124176560 TATTCACTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.36
Consensus pattern (22 bp):
AATTACCACCATTCTTCGAAAT
Found at i:124178747 original size:24 final size:24
Alignment explanation
Indices: 124178686--124178774 Score: 135
Period size: 24 Copynumber: 3.8 Consensus size: 24
124178676 TCTTACTTAT
124178686 TCGCACACATAGTGCCACGTTTTC
1 TCGCACACATAGTGCCACGTTTTC
124178710 TCGCA-ACATAGTGCCACGTTTTC
1 TCGCACACATAGTGCCACGTTTTC
* **
124178733 TCGCACACATAGTGCCATGTAATC
1 TCGCACACATAGTGCCACGTTTTC
*
124178757 TTGCACACATAGTGCCAC
1 TCGCACACATAGTGCCAC
124178775 ATAGCCTTGC
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
23 23 0.39
24 36 0.61
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (24 bp):
TCGCACACATAGTGCCACGTTTTC
Found at i:124178783 original size:24 final size:24
Alignment explanation
Indices: 124178735--124178795 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
124178725 ACGTTTTCTC
** *
124178735 GCACACATAGTGCCATGTAATCTT
1 GCACACATAGTGCCACATAACCTT
*
124178759 GCACACATAGTGCCACATAGCCTT
1 GCACACATAGTGCCACATAACCTT
124178783 GCACACATAGTGC
1 GCACACATAGTGC
124178796 TGTATTTTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (24 bp):
GCACACATAGTGCCACATAACCTT
Found at i:124178787 original size:48 final size:47
Alignment explanation
Indices: 124178686--124178795 Score: 130
Period size: 48 Copynumber: 2.3 Consensus size: 47
124178676 TCTTACTTAT
** * ***
124178686 TCGCACACATAGTGCCACGTTTTCTCGCAACATAGTGCCACGTTTTC
1 TCGCACACATAGTGCCACGTAATCTCGCAACATAGTGCCACATAGCC
* *
124178733 TCGCACACATAGTGCCATGTAATCTTGCACACATAGTGCCACATAGCC
1 TCGCACACATAGTGCCACGTAATCTCGCA-ACATAGTGCCACATAGCC
*
124178781 TTGCACACATAGTGC
1 TCGCACACATAGTGC
124178796 TGTATTTTCT
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
47 25 0.47
48 28 0.53
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.26
Consensus pattern (47 bp):
TCGCACACATAGTGCCACGTAATCTCGCAACATAGTGCCACATAGCC
Found at i:124182549 original size:46 final size:43
Alignment explanation
Indices: 124182447--124182553 Score: 133
Period size: 43 Copynumber: 2.4 Consensus size: 43
124182437 TGTCTTTGAC
** * * *
124182447 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATAATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATAATAAT
*
124182490 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA---ATAAT
124182536 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
124182554 TTTCTGTTCT
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
43 33 0.60
46 22 0.40
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (43 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATAATAAT
Found at i:124184110 original size:14 final size:14
Alignment explanation
Indices: 124184078--124184125 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
124184068 AAAAATAAAT
124184078 AAAT-AACAAA-AA
1 AAATAAACAAACAA
* *
124184090 GAAATAAAGAAATAA
1 -AAATAAACAAACAA
124184105 AAATAAACAAACAA
1 AAATAAACAAACAA
124184119 AAATAAA
1 AAATAAA
124184126 TCAATAAACC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
13 4 0.13
14 24 0.80
15 2 0.07
ACGTcount: A:0.79, C:0.06, G:0.04, T:0.10
Consensus pattern (14 bp):
AAATAAACAAACAA
Found at i:124186395 original size:21 final size:21
Alignment explanation
Indices: 124186369--124186416 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
124186359 GAGATTAAAG
*
124186369 AAAGAAAGTCCAGAAAACTTT
1 AAAGAAAGTACAGAAAACTTT
*
124186390 AAAG-AAGTACAGAAAATTTT
1 AAAGAAAGTACAGAAAACTTT
124186410 AAAGAAA
1 AAAGAAA
124186417 ATCAATAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.58, C:0.08, G:0.15, T:0.19
Consensus pattern (21 bp):
AAAGAAAGTACAGAAAACTTT
Found at i:124187065 original size:11 final size:11
Alignment explanation
Indices: 124187049--124187077 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
124187039 ATTTTATCAT
124187049 TTCCTAACATG
1 TTCCTAACATG
124187060 TTCCTAACATG
1 TTCCTAACATG
124187071 TTCCTAA
1 TTCCTAA
124187078 AGTCTAACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.07, T:0.38
Consensus pattern (11 bp):
TTCCTAACATG
Found at i:124189783 original size:21 final size:21
Alignment explanation
Indices: 124189757--124189801 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
124189747 CTGAGACATG
*
124189757 GGCGTGTCTGGAGCCGTGTGA
1 GGCGTGTCTGGAGCCATGTGA
* *
124189778 GGCGTGTTTGGGGCCATGTGA
1 GGCGTGTCTGGAGCCATGTGA
124189799 GGC
1 GGC
124189802 ACACGGCCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.09, C:0.18, G:0.49, T:0.24
Consensus pattern (21 bp):
GGCGTGTCTGGAGCCATGTGA
Found at i:124190909 original size:27 final size:26
Alignment explanation
Indices: 124190865--124190928 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 26
124190855 CTACCATGTG
124190865 ACATTTTTTTAAAAGAATACTAAGAA
1 ACATTTTTTTAAAAGAATACTAAGAA
** *
124190891 ACATTGTTTTTAATCGAATACTAAGAG
1 ACATT-TTTTTAAAAGAATACTAAGAA
124190918 ACAATTTTTTT
1 AC-ATTTTTTT
124190929 GAGCCAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.15
27 25 0.76
28 3 0.09
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (26 bp):
ACATTTTTTTAAAAGAATACTAAGAA
Found at i:124196072 original size:29 final size:29
Alignment explanation
Indices: 124196031--124196086 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
124196021 AACTTTCATA
124196031 AAAAACTAGTCCATGTATGTCAGAATGTT
1 AAAAACTAGTCCATGTATGTCAGAATGTT
*
124196060 AAAAACTAGTCCATGTATGTTAGAATG
1 AAAAACTAGTCCATGTATGTCAGAATG
124196087 AGATATGCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (29 bp):
AAAAACTAGTCCATGTATGTCAGAATGTT
Found at i:124202212 original size:18 final size:18
Alignment explanation
Indices: 124202164--124202204 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
124202154 AGTTCATTTA
124202164 CATAACATGAACTTATAG
1 CATAACATGAACTTATAG
124202182 CATAACATGAACTTATAG
1 CATAACATGAACTTATAG
124202200 CATAA
1 CATAA
124202205 TCATAACTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.46, C:0.17, G:0.10, T:0.27
Consensus pattern (18 bp):
CATAACATGAACTTATAG
Found at i:124203432 original size:15 final size:17
Alignment explanation
Indices: 124203386--124203436 Score: 61
Period size: 18 Copynumber: 3.0 Consensus size: 17
124203376 GGAAGTATAT
124203386 GAAGTTTTGGTTATTAGG
1 GAAG-TTTGGTTATTAGG
*
124203404 GAAGTTTGGATTATTGGG
1 GAAGTTTGG-TTATTAGG
124203422 GAAG-TT-GTTATTAGG
1 GAAGTTTGGTTATTAGG
124203437 ATAATTCATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
15 7 0.23
16 1 0.03
17 7 0.23
18 15 0.50
ACGTcount: A:0.24, C:0.00, G:0.35, T:0.41
Consensus pattern (17 bp):
GAAGTTTGGTTATTAGG
Found at i:124204379 original size:28 final size:28
Alignment explanation
Indices: 124204339--124204392 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
124204329 TTTATTGAGT
124204339 TAGTATCACCCTCAACCGAGTCACCAAC
1 TAGTATCACCCTCAACCGAGTCACCAAC
124204367 TAGTATCACCCTCAACCGAGTCACCA
1 TAGTATCACCCTCAACCGAGTCACCA
124204393 CCTCAAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.31, C:0.39, G:0.11, T:0.19
Consensus pattern (28 bp):
TAGTATCACCCTCAACCGAGTCACCAAC
Found at i:124204875 original size:23 final size:23
Alignment explanation
Indices: 124204843--124204889 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
124204833 ACCCAAATAG
* *
124204843 GTTCATGGAGTTTTAATGGGAGT
1 GTTCACGGAGTTTCAATGGGAGT
124204866 GTTCACGGAGTTTCAATGGGAGT
1 GTTCACGGAGTTTCAATGGGAGT
124204889 G
1 G
124204890 CCTAAGCCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.21, C:0.09, G:0.36, T:0.34
Consensus pattern (23 bp):
GTTCACGGAGTTTCAATGGGAGT
Found at i:124207833 original size:2 final size:2
Alignment explanation
Indices: 124207828--124207862 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
124207818 GCTATATAAC
*
124207828 AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
124207863 ATGAAAATAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:124208076 original size:28 final size:28
Alignment explanation
Indices: 124208017--124208079 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
124208007 TAGTGATAGT
* *
124208017 AATAATAATGTTAAAAAAGATATAATAT
1 AATAATAATATTAAAAAAGATATAATAA
* *
124208045 AATAGTAATATTAAAATAAGATA-ATTAA
1 AATAATAATATTAAAA-AAGATATAATAA
124208073 AATAATA
1 AATAATA
124208080 CTATACCTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
28 23 0.79
29 6 0.21
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (28 bp):
AATAATAATATTAAAAAAGATATAATAA
Found at i:124209789 original size:16 final size:16
Alignment explanation
Indices: 124209731--124209791 Score: 50
Period size: 16 Copynumber: 3.5 Consensus size: 16
124209721 ATTAATAAAT
*
124209731 AATTTAGAATATATAAA
1 AATTTA-AATATATTAA
* *
124209748 AATTAAAAAATATATAA
1 AATTTAAATATAT-TAA
124209765 AACTTTTTAAATATATTAA
1 AA---TTTAAATATATTAA
124209784 AATTTAAA
1 AATTTAAA
124209792 ATTTTATTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 9
0.71 0.10 0.18
Matches are distributed among these distances:
16 12 0.34
17 9 0.26
19 5 0.14
20 9 0.26
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (16 bp):
AATTTAAATATATTAA
Found at i:124212611 original size:3 final size:3
Alignment explanation
Indices: 124212605--124212630 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
124212595 TAAAAGTATT
124212605 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
124212631 TCTACAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:124212734 original size:18 final size:21
Alignment explanation
Indices: 124212700--124212748 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 21
124212690 CAACAATAAT
124212700 ATAAAATA-ATGATATA-TAC
1 ATAAAATATATGATATAGTAC
124212719 A-AAAATATAT-ATATATGTAC
1 ATAAAATATATGATATA-GTAC
124212739 ATAAAATATA
1 ATAAAATATA
124212749 CACTAATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 11 0.42
19 3 0.12
20 4 0.15
21 8 0.31
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (21 bp):
ATAAAATATATGATATAGTAC
Found at i:124212757 original size:21 final size:21
Alignment explanation
Indices: 124212711--124212762 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
124212701 TAAAATAATG
* *
124212711 ATATATACA-AAAATATATAT
1 ATATGTACATAAAATATACAT
124212731 ATATGTACATAAAATATACACT
1 ATATGTACATAAAATATACA-T
124212753 A-ATGTA-ATAA
1 ATATGTACATAA
124212763 TAATTATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 12 0.43
21 14 0.50
22 2 0.07
ACGTcount: A:0.56, C:0.08, G:0.04, T:0.33
Consensus pattern (21 bp):
ATATGTACATAAAATATACAT
Found at i:124212888 original size:36 final size:37
Alignment explanation
Indices: 124212822--124212893 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 37
124212812 CACCATATGG
* * *
124212822 TATTTAAAATATATATATATATATGTATATATAATAA
1 TATTTAAAATATATACATATAGATGTATATAAAATAA
124212859 TATTTAAGAATATATACATA-AGATG-ATATAAAATA
1 TATTTAA-AATATATACATATAGATGTATATAAAATA
124212894 CATACATGGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 9 0.29
37 11 0.35
38 11 0.35
ACGTcount: A:0.53, C:0.01, G:0.06, T:0.40
Consensus pattern (37 bp):
TATTTAAAATATATACATATAGATGTATATAAAATAA
Found at i:124212965 original size:11 final size:11
Alignment explanation
Indices: 124212938--124212982 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
124212928 TTGCATTAAA
*
124212938 AAAATATATAC
1 AAAATATATAT
*
124212949 ATAATATATAT
1 AAAATATATAT
*
124212960 AAAATACATAT
1 AAAATATATAT
*
124212971 AATATATATAT
1 AAAATATATAT
124212982 A
1 A
124212983 CGTATTAGAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (11 bp):
AAAATATATAT
Found at i:124214638 original size:13 final size:13
Alignment explanation
Indices: 124214610--124214644 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
124214600 TGAGTTGATT
124214610 TTTGAAAACAGAA
1 TTTGAAAACAGAA
*
124214623 TTTGCAAAACAGAT
1 TTTG-AAAACAGAA
124214637 TTTGAAAA
1 TTTGAAAA
124214645 TACCTCGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.29
Consensus pattern (13 bp):
TTTGAAAACAGAA
Done.