Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 40 of 433
Found at i:10460603 original size:6 final size:6
Alignment explanation
Indices: 10460594--10460625 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
10460584 CACCGTAAGG
10460594 GTAACA GTAACA GTAACA GTAACA GTAACA GT
1 GTAACA GTAACA GTAACA GTAACA GTAACA GT
10460626 CAAGTACGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:10473521 original size:17 final size:16
Alignment explanation
Indices: 10473495--10473526 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
10473485 ATAAATTCTA
10473495 TTAAATTATAATTATT
1 TTAAATTATAATTATT
10473511 TTAAATGTATAATTAT
1 TTAAAT-TATAATTAT
10473527 CATAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TTAAATTATAATTATT
Found at i:10478336 original size:33 final size:31
Alignment explanation
Indices: 10478299--10478368 Score: 95
Period size: 33 Copynumber: 2.2 Consensus size: 31
10478289 AAAAAAAAAT
10478299 AAAAAAAATTCGAAAATTCTTCGAAAAAATCTC
1 AAAAAAAATTCGAAAATTC-TC-AAAAAATCTC
* * *
10478332 AAAAATAATTCGAAAATTCTCAGAAAATCTT
1 AAAAAAAATTCGAAAATTCTCAAAAAATCTC
10478363 AAAAAA
1 AAAAAA
10478369 TACGAAGTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 13 0.39
32 2 0.06
33 18 0.55
ACGTcount: A:0.57, C:0.13, G:0.06, T:0.24
Consensus pattern (31 bp):
AAAAAAAATTCGAAAATTCTCAAAAAATCTC
Found at i:10478352 original size:21 final size:23
Alignment explanation
Indices: 10478301--10478359 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 23
10478291 AAAAAAATAA
**
10478301 AAAAAAT-TC-GAAAATTCTTCG
1 AAAAAATCTCAGAAAATAATTCG
10478322 AAAAAATCTCA-AAAATAATTCG
1 AAAAAATCTCAGAAAATAATTCG
*
10478344 -AAAATTCTCAGAAAAT
1 AAAAAATCTCAGAAAAT
10478360 CTTAAAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 16 0.50
22 16 0.50
ACGTcount: A:0.54, C:0.14, G:0.07, T:0.25
Consensus pattern (23 bp):
AAAAAATCTCAGAAAATAATTCG
Found at i:10478359 original size:22 final size:22
Alignment explanation
Indices: 10478301--10478347 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
10478291 AAAAAAATAA
* **
10478301 AAAAAAT-TCGAAAATTCTTCG
1 AAAAAATCTCAAAAATAATTCG
10478322 AAAAAATCTCAAAAATAATTCG
1 AAAAAATCTCAAAAATAATTCG
10478344 AAAA
1 AAAA
10478348 TTCTCAGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.57, C:0.13, G:0.06, T:0.23
Consensus pattern (22 bp):
AAAAAATCTCAAAAATAATTCG
Found at i:10482752 original size:46 final size:46
Alignment explanation
Indices: 10482702--10482877 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
10482692 TGGTTGAGCA
10482702 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
10482748 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
10482793 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
10482841 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
10482878 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:10482858 original size:93 final size:93
Alignment explanation
Indices: 10482699--10482870 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
10482689 GGATGGTTGA
* *
10482699 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
10482764 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
10482792 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
10482857 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
10482871 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:10492253 original size:29 final size:29
Alignment explanation
Indices: 10492192--10492292 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
10492182 CCTCCGAGCT
** * *
10492192 CGCACACCCAGTGCCGTAT-TTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
10492220 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
10492249 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
10492278 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
10492293 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
28 15 0.23
29 51 0.77
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:10500058 original size:29 final size:29
Alignment explanation
Indices: 10500030--10500131 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
10500020 CCTCCGAGCT
** * * *
10500030 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
10500059 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
10500088 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
10500117 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
10500132 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:10503239 original size:28 final size:28
Alignment explanation
Indices: 10503199--10503255 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
10503189 TTCTTTTAAG
10503199 AATAAGAACAAGTAATGGATAGTACATA
1 AATAAGAACAAGTAATGGATAGTACATA
10503227 AATAAGAACAAGTAATGGATAGTACATA
1 AATAAGAACAAGTAATGGATAGTACATA
10503255 A
1 A
10503256 TATTTCAGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.54, C:0.07, G:0.18, T:0.21
Consensus pattern (28 bp):
AATAAGAACAAGTAATGGATAGTACATA
Found at i:10509575 original size:17 final size:17
Alignment explanation
Indices: 10509553--10509586 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10509543 TTCCTGTGGC
10509553 AGCTTCTTTTCAGATTT
1 AGCTTCTTTTCAGATTT
*
10509570 AGCTTCTTTTTAGATTT
1 AGCTTCTTTTCAGATTT
10509587 TGGGTTGGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.15, G:0.12, T:0.56
Consensus pattern (17 bp):
AGCTTCTTTTCAGATTT
Found at i:10516309 original size:5 final size:5
Alignment explanation
Indices: 10516299--10516331 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
10516289 TCTTTGTATT
10516299 TTTTA TTTTA TTTTA -TTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
10516332 CACAAAAGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:10516319 original size:14 final size:14
Alignment explanation
Indices: 10516300--10516330 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
10516290 CTTTGTATTT
10516300 TTTATTTTATTTTA
1 TTTATTTTATTTTA
10516314 TTTATTTTATTTTA
1 TTTATTTTATTTTA
10516328 TTT
1 TTT
10516331 TCACAAAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:10518973 original size:43 final size:43
Alignment explanation
Indices: 10518907--10519022 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 43
10518897 GTTACATCTA
* * **
10518907 TCGCATCCATTATGAACTCGGACCACTCAACGAGCTTGGATGC
1 TCGCATCCATAATGAACTTGGACCACTCAACGAGCTCAGATGC
* *
10518950 TCGCATCCATAATGAAATTGGACCACTCAATGAGCTCAGATGC
1 TCGCATCCATAATGAACTTGGACCACTCAACGAGCTCAGATGC
* ** *
10518993 -CACATATATCATGAACTTGGACCACTCAAC
1 TCGCATCCATAATGAACTTGGACCACTCAAC
10519023 AAGTTCAAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
42 24 0.39
43 37 0.61
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (43 bp):
TCGCATCCATAATGAACTTGGACCACTCAACGAGCTCAGATGC
Found at i:10519049 original size:43 final size:42
Alignment explanation
Indices: 10518961--10519064 Score: 127
Period size: 43 Copynumber: 2.5 Consensus size: 42
10518951 CGCATCCATA
* ** *
10518961 ATGAAATTGGACCACTCAATGAGCTCAGATGCCACATATATC
1 ATGAACTTGGACCACTCAACAAGCTCAAATGCCACATATATC
* *
10519003 ATGAACTTGGACCACTCAACAAGTTCAAATTCTCACATATATC
1 ATGAACTTGGACCACTCAACAAGCTCAAATGC-CACATATATC
* *
10519046 ATGAACTCGGACCGCTCAA
1 ATGAACTTGGACCACTCAA
10519065 TGAGCTCGGA
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 26 0.49
43 27 0.51
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24
Consensus pattern (42 bp):
ATGAACTTGGACCACTCAACAAGCTCAAATGCCACATATATC
Found at i:10529964 original size:20 final size:20
Alignment explanation
Indices: 10529901--10529967 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
10529891 TTATGAATAC
10529901 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
10529921 AACATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
10529941 ATCATGTGCATGTCATATCA-
1 ATCATGTGCATATCATA-CAT
10529961 ATCATGT
1 ATCATGT
10529968 ATATCAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:10536590 original size:17 final size:18
Alignment explanation
Indices: 10536548--10536596 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
10536538 AGTTGAAAAG
10536548 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
10536567 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
10536584 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
10536597 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:10537484 original size:40 final size:40
Alignment explanation
Indices: 10537418--10537584 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
10537408 AAATTGAATG
* * *
10537418 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
10537457 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
10537497 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
10537537 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
10537577 ATATCCGG
1 ATATCCGG
10537585 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:10544590 original size:17 final size:18
Alignment explanation
Indices: 10544548--10544596 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
10544538 AGTTGAAAAG
10544548 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
10544567 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
10544584 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
10544597 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:10545484 original size:40 final size:40
Alignment explanation
Indices: 10545418--10545584 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
10545408 AAATTGAATG
* * *
10545418 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
10545457 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
10545497 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
10545537 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
10545577 ATATCCGG
1 ATATCCGG
10545585 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:10558000 original size:19 final size:19
Alignment explanation
Indices: 10557976--10558013 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
10557966 GCAGGAACCA
10557976 AAGAGAAATAAGGCGAAGC
1 AAGAGAAATAAGGCGAAGC
*
10557995 AAGAGAAATAAGGTGAAGC
1 AAGAGAAATAAGGCGAAGC
10558014 TTAAGATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.53, C:0.08, G:0.32, T:0.08
Consensus pattern (19 bp):
AAGAGAAATAAGGCGAAGC
Found at i:10564196 original size:17 final size:17
Alignment explanation
Indices: 10564174--10564218 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
10564164 ATGACTAGCT
*
10564174 ATTTTTCTAGTTAGGTA
1 ATTTTTCAAGTTAGGTA
10564191 ATTTTTCAAGTTAGGTA
1 ATTTTTCAAGTTAGGTA
10564208 ATTTTTCAAGT
1 ATTTTTCAAGT
10564219 CAATCTCGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.27, C:0.07, G:0.16, T:0.51
Consensus pattern (17 bp):
ATTTTTCAAGTTAGGTA
Found at i:10573223 original size:27 final size:27
Alignment explanation
Indices: 10573193--10573365 Score: 211
Period size: 27 Copynumber: 6.4 Consensus size: 27
10573183 TGGATAAGTT
*
10573193 GTAGAATTACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
** * *
10573220 GTAGAATTATTGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
10573247 GTAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
10573274 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
10573301 GTAAAAATATCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
10573328 GTAGAATTACCGAGATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
10573355 GTAAAATTACC
1 GTAGAATTACC
10573366 ATTTTTCCCC
Statistics
Matches: 122, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 122 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:10580674 original size:22 final size:23
Alignment explanation
Indices: 10580643--10580685 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
10580633 GAGTGAACTT
*
10580643 GATAGGAAAAACACGGGCGTGGG
1 GATAGGAAAAACACGAGCGTGGG
*
10580666 GATA-GAAAACCACGAGCGTG
1 GATAGGAAAAACACGAGCGTG
10580686 CTAGGGACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.37, C:0.16, G:0.37, T:0.09
Consensus pattern (23 bp):
GATAGGAAAAACACGAGCGTGGG
Found at i:10594025 original size:21 final size:22
Alignment explanation
Indices: 10594001--10594050 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
10593991 CGGACTACAG
*
10594001 CACAGGCGTG-CCCCAGGGTCA
1 CACAGGCGTGTCCCCAGGGCCA
**
10594022 CACAGGCGTGTCCCTTGGGCCA
1 CACAGGCGTGTCCCCAGGGCCA
10594044 CACAGGC
1 CACAGGC
10594051 ATGTGAGCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.18, C:0.38, G:0.32, T:0.12
Consensus pattern (22 bp):
CACAGGCGTGTCCCCAGGGCCA
Found at i:10598690 original size:46 final size:46
Alignment explanation
Indices: 10598637--10598729 Score: 150
Period size: 46 Copynumber: 2.0 Consensus size: 46
10598627 AAATTGGGAA
* *
10598637 ATTTGCCTAATGGTCACTCCCACTCCCACATTTCCCTTACTTTAGC
1 ATTTGCCTAATGGCCACTCCCACTCCCACATTCCCCTTACTTTAGC
* *
10598683 ATTTGCCTAGTGGCCACTCCCACTCTCACATTCCCCTTACTTTAGC
1 ATTTGCCTAATGGCCACTCCCACTCCCACATTCCCCTTACTTTAGC
10598729 A
1 A
10598730 ATTGATCATT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.19, C:0.38, G:0.10, T:0.33
Consensus pattern (46 bp):
ATTTGCCTAATGGCCACTCCCACTCCCACATTCCCCTTACTTTAGC
Found at i:10603092 original size:41 final size:41
Alignment explanation
Indices: 10603066--10603149 Score: 150
Period size: 41 Copynumber: 2.0 Consensus size: 41
10603056 TAGTTGCATG
*
10603066 TTAGGCTAAATCACATTAGGGATCATTGCATGTAGATTAAT
1 TTAGGCTAAATCACATTAGGGATCATTGCATATAGATTAAT
*
10603107 TTAGGCTAAATCACATTAGGGATCATTGCATCTAGATTAAT
1 TTAGGCTAAATCACATTAGGGATCATTGCATATAGATTAAT
10603148 TT
1 TT
10603150 TACATAATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (41 bp):
TTAGGCTAAATCACATTAGGGATCATTGCATATAGATTAAT
Found at i:10607685 original size:2 final size:2
Alignment explanation
Indices: 10607678--10607715 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
10607668 TAAAGGGATA
* *
10607678 AG AG AG AG AG AG AG AG AG AG AG AA AG AG AG AG AA AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
10607716 TTACAAGAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (2 bp):
AG
Found at i:10608903 original size:10 final size:10
Alignment explanation
Indices: 10608888--10608912 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
10608878 AGGTTTTAAT
10608888 TTTTAAAATA
1 TTTTAAAATA
10608898 TTTTAAAATA
1 TTTTAAAATA
10608908 TTTTA
1 TTTTA
10608913 TTTTGTCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTTAAAATA
Found at i:10610574 original size:12 final size:12
Alignment explanation
Indices: 10610558--10610596 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
10610548 CTAATGTCAT
10610558 CATCAATGCCAA
1 CATCAATGCCAA
* **
10610570 TATCAATGCCCG
1 CATCAATGCCAA
10610582 CATCAATGCCAA
1 CATCAATGCCAA
10610594 CAT
1 CAT
10610597 ATCAGGGTTT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.36, C:0.33, G:0.10, T:0.21
Consensus pattern (12 bp):
CATCAATGCCAA
Found at i:10612743 original size:18 final size:18
Alignment explanation
Indices: 10612720--10612758 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
10612710 TTCGCTACCC
10612720 CTTCTTCCTC-ATCTGCAT
1 CTTCTTCCTCAAT-TGCAT
10612738 CTTCTTCCTCAATTGCAT
1 CTTCTTCCTCAATTGCAT
10612756 CTT
1 CTT
10612759 TCTTGTCATC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.13, C:0.36, G:0.05, T:0.46
Consensus pattern (18 bp):
CTTCTTCCTCAATTGCAT
Found at i:10615384 original size:21 final size:22
Alignment explanation
Indices: 10615360--10615405 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
10615350 AATGAATTTT
10615360 TATTTTTAAA-TATTAAAAATA
1 TATTTTTAAATTATTAAAAATA
*
10615381 TATTTTTAAATTTTTAAAAATA
1 TATTTTTAAATTATTAAAAATA
10615403 TAT
1 TAT
10615406 AAAACTGGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TATTTTTAAATTATTAAAAATA
Found at i:10616591 original size:12 final size:10
Alignment explanation
Indices: 10616555--10616586 Score: 50
Period size: 9 Copynumber: 3.4 Consensus size: 10
10616545 AAATTTATAA
10616555 AATATTTTTT
1 AATATTTTTT
10616565 -ATATTTTTT
1 AATATTTTTT
10616574 AATA-TTTTT
1 AATATTTTTT
10616583 AATA
1 AATA
10616587 ATATTATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 18 0.86
10 3 0.14
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (10 bp):
AATATTTTTT
Found at i:10616600 original size:19 final size:19
Alignment explanation
Indices: 10616535--10616601 Score: 59
Period size: 19 Copynumber: 3.5 Consensus size: 19
10616525 AACATTTAAT
10616535 TAAT-TTTTTAA-AATTTA
1 TAATATTTTTAATAATTTA
* * *
10616552 TAAAATATTTTTTATATTTTT
1 T--AATATTTTTAATAATTTA
10616573 TAATATTTTTAATAATATTA
1 TAATATTTTTAATAAT-TTA
10616593 TAAT-TTTTT
1 TAATATTTTT
10616602 GAATTTTAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
17 1 0.03
19 21 0.54
20 12 0.31
21 5 0.13
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TAATATTTTTAATAATTTA
Found at i:10616731 original size:21 final size:21
Alignment explanation
Indices: 10616707--10616746 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
10616697 AGCTAAAAAG
10616707 ATAAAAAGATAAAAAAATTAA
1 ATAAAAAGATAAAAAAATTAA
* * *
10616728 ATAAAGAGTTAAAATAATT
1 ATAAAAAGATAAAAAAATT
10616747 TTTTTTATAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.25
Consensus pattern (21 bp):
ATAAAAAGATAAAAAAATTAA
Found at i:10617376 original size:21 final size:21
Alignment explanation
Indices: 10617342--10617385 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
10617332 AAATCTCTAC
*
10617342 AATTTCTCCCTAAAGCTCTCA
1 AATTTCTCACTAAAGCTCTCA
* **
10617363 AATTTCTCATTAAATTTCTCA
1 AATTTCTCACTAAAGCTCTCA
10617384 AA
1 AA
10617386 GCTCTTTATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.25, G:0.02, T:0.39
Consensus pattern (21 bp):
AATTTCTCACTAAAGCTCTCA
Found at i:10620188 original size:40 final size:40
Alignment explanation
Indices: 10619956--10620181 Score: 237
Period size: 40 Copynumber: 5.7 Consensus size: 40
10619946 TCGAATGATG
* * *
10619956 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
10619996 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * **
10620036 TCCGGACTAAGAT-CCAAAGGCATTCATGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
10620076 TCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
10620116 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
10620157 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
10620182 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 155 0.94
41 9 0.05
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:10621705 original size:6 final size:6
Alignment explanation
Indices: 10621694--10621719 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
10621684 TATAGTAATG
10621694 GATCCC GATCCC GATCCC GATCCC GA
1 GATCCC GATCCC GATCCC GATCCC GA
10621720 CCGAGCGGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.46, G:0.19, T:0.15
Consensus pattern (6 bp):
GATCCC
Found at i:10626779 original size:27 final size:28
Alignment explanation
Indices: 10626749--10626818 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
10626739 ATAGTGAGTC
*
10626749 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
10626776 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
10626804 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
10626819 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:10631359 original size:40 final size:40
Alignment explanation
Indices: 10631167--10631352 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
10631157 TCGAATGATG
* * *
10631167 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
10631207 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
10631247 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
10631287 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
10631328 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
10631353 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:10637310 original size:126 final size:126
Alignment explanation
Indices: 10637083--10637835 Score: 1041
Period size: 126 Copynumber: 6.0 Consensus size: 126
10637073 GGTCAATCAT
** * * * *
10637083 GAACTACTGTAGATTAAGAGCGTCTACCTGGGAGCTTTTTTCAGAAATTTTGCTGACA-TGCATC
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTAGAAATTTTGCTGACATTGCATC
* * *
10637147 CTACTTGAAGCGATTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
* *
10637208 GAACTACTATAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTAGAAATTTTGTTGACATTGCATC
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTAGAAATTTTGCTGACATTGCATC
*
10637273 TTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
* * * *
10637334 GAACTACTATAGAAAAAGAGCATCCATGTAGGAGCTTTTTTCAGAAATTTTGCTGACATTGCATC
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTAGAAATTTTGCTGACATTGCATC
*
10637399 CTGCTTAAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTTCAG
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA-TTTTTTCAG
*
10637461 GAACTACTGTAGAAAAAGAG-AGTCCACATGGGAGCTTTTTTCT-GAAATTTTGCTGACATTGCA
1 GAACTACTGTAGAAAAAGAGCA-TCCACGTGGGAGCTTTTTT-TAGAAATTTTGCTGACATTGCA
* * * * * * *
10637524 TCCTACTAGAAACATTTTTGACATTATTTGTTCAAAAACCTCTTCTCAAAATTATTTTTTCAG
64 TCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
* * * * * *
10637587 GAACTACTGTAGAAAAAGAGCGTTCACGTGGGAGC-TTTTTTATGTAATTTTGCAGATAGTGCAT
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTA-GAAATTTTGCTGACATTGCAT
* *
10637651 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAATATCTTCTCAAAATTATTTTTTCAT
65 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
* * * * *
10637713 GAAGTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCT-GTAATTTTGCTGACAGTGCAT
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTT-TAGAAATTTTGCTGACATTGCAT
* * *
10637777 TCTGCTTGAAGCGTTCTTGACACTATTTGTTCAGAAACATTTTCAT-AAAATTATTTTTT
65 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTC-TCAAAATTATTTTTT
10637836 TAGGGTACAA
Statistics
Matches: 562, Mismatches: 56, Indels: 19
0.88 0.09 0.03
Matches are distributed among these distances:
124 1 0.00
125 55 0.10
126 389 0.69
127 116 0.21
128 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTAGAAATTTTGCTGACATTGCATC
CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
Found at i:10637544 original size:253 final size:251
Alignment explanation
Indices: 10637113--10637835 Score: 1058
Period size: 253 Copynumber: 2.9 Consensus size: 251
10637103 CGTCTACCTG
* *
10637113 GGAGCTTTTTTCAGAAATTTTGCTGACATGCATCCTACTTGAAGCGATTTTGACACTATTTGTTC
1 GGAGCTTTTTTCAGAAATTTTGCTGACATGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTC
* *
10637178 AAAAACATCTTCTCAAAATTATTTTTTCAGGAACTACTATAGAAAAAGAGCA-TCCACGTGGGAG
66 AGAAACATCTTCTCAAAATTATTTTTTCAGGAACTACTGTAGAAAAAGAG-AGTCCACGTGGGAG
* *
10637242 CTTTTTT-TAGAAATTTTGTTGACATTGCATCTTGCTTGAAGCGTTTTTGACACTATTTGTTCAG
130 CTTTTTTCT-GAAATTTTGCTGACATTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAG
*
10637306 AAACATCTTCTCAAAATTATTTTTTCAGGAACTACTATAGAAAAAGAGCATCCATGTA
194 AAACATCTTCTCAAAATTATTTTTTCAGGAACTACTATAGAAAAAGAGCATCCACGTA
*
10637364 GGAGCTTTTTTCAGAAATTTTGCTGACATTGCATCCTGCTTAAAGCGTTTTTGACACTATTTGTT
1 GGAGCTTTTTTCAGAAATTTTGCTGACA-TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTT
*
10637429 CAGAAACATCTTCTCAAAATTATTTTTTTCAGGAACTACTGTAGAAAAAGAGAGTCCACATGGGA
65 CAGAAACATCTTCTCAAAATTA-TTTTTTCAGGAACTACTGTAGAAAAAGAGAGTCCACGTGGGA
* * * * * *
10637494 GCTTTTTTCTGAAATTTTGCTGACATTGCATCCTACTAGAAACATTTTTGACATTATTTGTTCAA
129 GCTTTTTTCTGAAATTTTGCTGACATTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAG
* * * * *
10637559 AAACCTCTTCTCAAAATTATTTTTTCAGGAACTACTGTAGAAAAAGAGCGTTCACGTG
194 AAACATCTTCTCAAAATTATTTTTTCAGGAACTACTATAGAAAAAGAGCATCCACGTA
* * *
10637617 GGAGCTTTTTT-ATGTAATTTTGCAGATAGTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGT
1 GGAGCTTTTTTCA-GAAATTTTGCTGACA-TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGT
* * * * *
10637681 TCAGAAATATCTTCTCAAAATTATTTTTTCATGAAGTACTGTAGAAAAAGAGCGTCCACGTGAGA
64 TCAGAAACATCTTCTCAAAATTATTTTTTCAGGAACTACTGTAGAAAAAGAGAGTCCACGTGGGA
* * * *
10637746 GCTTTTTTCTGTAATTTTGCTGACAGTGCATTCTGCTTGAAGCGTTCTTGACACTATTTGTTCAG
129 GCTTTTTTCTGAAATTTTGCTGACATTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAG
*
10637811 AAACATTTTCAT-AAAATTATTTTTT
194 AAACATCTTC-TCAAAATTATTTTTT
10637836 TAGGGTACAA
Statistics
Matches: 423, Mismatches: 43, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
251 28 0.07
252 169 0.40
253 225 0.53
254 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.38
Consensus pattern (251 bp):
GGAGCTTTTTTCAGAAATTTTGCTGACATGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTC
AGAAACATCTTCTCAAAATTATTTTTTCAGGAACTACTGTAGAAAAAGAGAGTCCACGTGGGAGC
TTTTTTCTGAAATTTTGCTGACATTGCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAA
ACATCTTCTCAAAATTATTTTTTCAGGAACTACTATAGAAAAAGAGCATCCACGTA
Found at i:10637791 original size:379 final size:378
Alignment explanation
Indices: 10637083--10637836 Score: 1147
Period size: 379 Copynumber: 2.0 Consensus size: 378
10637073 GGTCAATCAT
** * * *
10637083 GAACTACTGTAGATTAAGAGCGTCTACCTGGGAGCTTTTTTCAGAAATTTTGCTGACATGCATCC
1 GAACTACTGTAGAAAAAGAGAGTCCACATGGGAGCTTTTTTCAGAAATTTTGCTGACATGCATCC
* *
10637148 TACTTGAAGCGATTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTATTTTTTCAGGAACT
66 TACTAGAAACGATTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTATTTTTTCAGGAACT
** * *
10637213 ACTATAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTAGAAATTTTGTTGACATTGCATCTTGCT
131 ACTATAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTAGAAATTTTGCAGACAGTGCATCCTGCT
10637278 TGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGGAACTACTA
196 TGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGGAACTACTA
* *
10637343 TAGAAAAAGAGCATCCATGTAGGAGCTTTTTTCAGAAATTTTGCTGACATTGCATCCTGCTTAAA
261 TAGAAAAAGAGCATCCACGTAGGAGCTTTTTTCAGAAATTTTGCTGACAGTGCATCCTGCTTAAA
*
10637408 GCGTTTTTGACACTATTTGTTCAGAAACATCTTC-TCAAAATTATTTTTTTCAG
326 GCGTTCTTGACACTATTTGTTCAGAAACATCTTCAT-AAAATTATTTTTTTCAG
*
10637461 GAACTACTGTAGAAAAAGAGAGTCCACATGGGAGCTTTTTTCTGAAATTTTGCTGACATTGCATC
1 GAACTACTGTAGAAAAAGAGAGTCCACATGGGAGCTTTTTTCAGAAATTTTGCTGACA-TGCATC
* *
10637526 CTACTAGAAAC-ATTTTTGACATTATTTGTTCAAAAACCTCTTCTCAAAATTATTTTTTCAGGAA
65 CTACTAGAAACGA-TTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTATTTTTTCAGGAA
* * * * *
10637590 CTACTGTAGAAAAAGAGCGTTCACGTGGGAGC-TTTTTTATGTAATTTTGCAGATAGTGCATCCT
129 CTACTATAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTA-GAAATTTTGCAGACAGTGCATCCT
* * *
10637654 GCTTGAAGCGTTTTTGACACTATTTGTTCAGAAATATCTTCTCAAAATTATTTTTTCATGAAGTA
193 GCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGGAACTA
* * * * *
10637719 CTGTAGAAAAAGAGCGTCCACGT-GAGAGCTTTTTTCTGTAATTTTGCTGACAGTGCATTCTGCT
258 CTATAGAAAAAGAGCATCCACGTAG-GAGCTTTTTTCAGAAATTTTGCTGACAGTGCATCCTGCT
* *
10637783 TGAAGCGTTCTTGACACTATTTGTTCAGAAACATTTTCATAAAATTATTTTTTT
322 TAAAGCGTTCTTGACACTATTTGTTCAGAAACATCTTCATAAAATTATTTTTTT
10637837 AGGGTACAAA
Statistics
Matches: 339, Mismatches: 32, Indels: 9
0.89 0.08 0.02
Matches are distributed among these distances:
378 61 0.18
379 277 0.82
380 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (378 bp):
GAACTACTGTAGAAAAAGAGAGTCCACATGGGAGCTTTTTTCAGAAATTTTGCTGACATGCATCC
TACTAGAAACGATTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTATTTTTTCAGGAACT
ACTATAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTAGAAATTTTGCAGACAGTGCATCCTGCT
TGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGGAACTACTA
TAGAAAAAGAGCATCCACGTAGGAGCTTTTTTCAGAAATTTTGCTGACAGTGCATCCTGCTTAAA
GCGTTCTTGACACTATTTGTTCAGAAACATCTTCATAAAATTATTTTTTTCAG
Found at i:10638030 original size:17 final size:17
Alignment explanation
Indices: 10638008--10638072 Score: 64
Period size: 17 Copynumber: 3.9 Consensus size: 17
10637998 CTAATTTAAC
*
10638008 TTATTTAAAACACTAAT
1 TTATTTAAAACCCTAAT
10638025 TTATTTAAAAACCCTAA-
1 TTATTT-AAAACCCTAAT
** *
10638042 --ACCTAAAACTCTAAT
1 TTATTTAAAACCCTAAT
10638057 TTATTTAAAACCCTAA
1 TTATTTAAAACCCTAA
10638073 CTTAATTTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
14 9 0.24
15 2 0.05
17 17 0.46
18 9 0.24
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.35
Consensus pattern (17 bp):
TTATTTAAAACCCTAAT
Found at i:10638070 original size:31 final size:32
Alignment explanation
Indices: 10638013--10638072 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
10638003 TTAACTTATT
10638013 TAAAACACTAATTTATTTAAAAACCCTAAACC
1 TAAAACACTAATTTATTTAAAAACCCTAAACC
*
10638045 TAAAACTCTAATTTATTT-AAAACCCTAA
1 TAAAACACTAATTTATTTAAAAACCCTAA
10638073 CTTAATTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
31 10 0.37
32 17 0.63
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (32 bp):
TAAAACACTAATTTATTTAAAAACCCTAAACC
Found at i:10638081 original size:22 final size:23
Alignment explanation
Indices: 10638048--10638094 Score: 87
Period size: 22 Copynumber: 2.1 Consensus size: 23
10638038 CTAAACCTAA
10638048 AACTCTAATTTATTTAAAACCCT
1 AACTCTAATTTATTTAAAACCCT
10638071 AACT-TAATTTATTTAAAACCCT
1 AACTCTAATTTATTTAAAACCCT
10638093 AA
1 AA
10638095 AAACCCTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.43, C:0.19, G:0.00, T:0.38
Consensus pattern (23 bp):
AACTCTAATTTATTTAAAACCCT
Found at i:10638098 original size:31 final size:34
Alignment explanation
Indices: 10638063--10638138 Score: 90
Period size: 35 Copynumber: 2.3 Consensus size: 34
10638053 TAATTTATTT
10638063 AAAACCCT-A-ACTTAATTTATTTAA-AACCCTA
1 AAAACCCTAATACTTAATTTATTTAATAACCCTA
10638094 AAAACCCTAATTTACTTAATTTATTTAATAA-CCT-
1 AAAACCCTAA--TACTTAATTTATTTAATAACCCTA
*
10638128 TAAACCCTAAT
1 AAAACCCTAAT
10638139 TTAAATAATT
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
31 8 0.21
32 2 0.05
34 9 0.23
35 18 0.46
36 2 0.05
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (34 bp):
AAAACCCTAATACTTAATTTATTTAATAACCCTA
Found at i:10638138 original size:34 final size:35
Alignment explanation
Indices: 10638072--10638141 Score: 108
Period size: 35 Copynumber: 2.0 Consensus size: 35
10638062 TAAAACCCTA
10638072 ACTTAATTTATTTAAAACCCTAAAAACCCTAATTT
1 ACTTAATTTATTTAAAACCCTAAAAACCCTAATTT
*
10638107 ACTTAATTTATTTAATAA-CCT-TAAACCCTAATTT
1 ACTTAATTTATTTAA-AACCCTAAAAACCCTAATTT
10638141 A
1 A
10638142 AATAATTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
34 13 0.39
35 18 0.55
36 2 0.06
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.40
Consensus pattern (35 bp):
ACTTAATTTATTTAAAACCCTAAAAACCCTAATTT
Found at i:10638148 original size:34 final size:35
Alignment explanation
Indices: 10638075--10638157 Score: 100
Period size: 34 Copynumber: 2.4 Consensus size: 35
10638065 AACCCTAACT
**
10638075 TAATTTATTTAAAACCCTAAAAACCCTAATTTACT
1 TAATTTATTTAAAACCCTAAAAACCCTAATTTAAA
*
10638110 TAATTTATTTAATAA-CCT-TAAACCCTAATTTAAA
1 TAATTTATTTAA-AACCCTAAAAACCCTAATTTAAA
10638144 TAATTT-TTATAAAA
1 TAATTTATT-TAAAA
10638158 TAACTCTAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
33 4 0.09
34 22 0.51
35 15 0.35
36 2 0.05
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.41
Consensus pattern (35 bp):
TAATTTATTTAAAACCCTAAAAACCCTAATTTAAA
Found at i:10638160 original size:36 final size:34
Alignment explanation
Indices: 10638075--10638177 Score: 95
Period size: 36 Copynumber: 2.9 Consensus size: 34
10638065 AACCCTAACT
* **
10638075 TAATTTATTTAA-AACCCTAAAAACCCTAATTTACT
1 TAATTTATTTAATAACTCT--AAACCCTAATTTAAA
10638110 TAATTTATTTAATAAC-CTTAAACCCTAATTTAAA
1 TAATTTATTTAATAACTC-TAAACCCTAATTTAAA
*
10638144 TAATTT-TTATAAAATAACTCTAAATCCTAATTTA
1 TAATTTATT-T--AATAACTCTAAACCCTAATTTA
10638178 TTTTTAAAAT
Statistics
Matches: 59, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
33 2 0.03
34 20 0.34
35 13 0.22
36 23 0.39
37 1 0.02
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.41
Consensus pattern (34 bp):
TAATTTATTTAATAACTCTAAACCCTAATTTAAA
Found at i:10644696 original size:40 final size:40
Alignment explanation
Indices: 10644652--10644731 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
10644642 TTGCTTGCAG
10644652 ATTGATTTAATATATGTATCCTATTATTTTAGAATTCTTT
1 ATTGATTTAATATATGTATCCTATTATTTTAGAATTCTTT
10644692 ATTGATTTAATATATGTATCCTATTATTTTAGAATTCTTT
1 ATTGATTTAATATATGTATCCTATTATTTTAGAATTCTTT
10644732 CTCTTTTTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.55
Consensus pattern (40 bp):
ATTGATTTAATATATGTATCCTATTATTTTAGAATTCTTT
Found at i:10644716 original size:22 final size:21
Alignment explanation
Indices: 10644656--10644720 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
10644646 TTGCAGATTG
10644656 ATTTAATATATGTATCCTATT
1 ATTTAATATATGTATCCTATT
* * * *
10644677 ATTTTAGA-AT-TCT-TTATT
1 ATTTAATATATGTATCCTATT
10644695 GATTTAATATATGTATCCTATT
1 -ATTTAATATATGTATCCTATT
10644717 ATTT
1 ATTT
10644721 TAGAATTCTT
Statistics
Matches: 32, Mismatches: 8, Indels: 8
0.67 0.17 0.17
Matches are distributed among these distances:
18 4 0.12
19 8 0.25
20 4 0.12
21 12 0.38
22 4 0.12
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.55
Consensus pattern (21 bp):
ATTTAATATATGTATCCTATT
Found at i:10644722 original size:22 final size:22
Alignment explanation
Indices: 10644657--10644722 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
10644647 TGCAGATTGA
10644657 TTTAATATATGTATCCTATTAT
1 TTTAATATATGTATCCTATTAT
*
10644679 TTTAGA-AT-TCT-T--TATTGA-
1 TTTA-ATATATGTATCCTATT-AT
10644697 TTTAATATATGTATCCTATTAT
1 TTTAATATATGTATCCTATTAT
10644719 TTTA
1 TTTA
10644723 GAATTCTTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 16
0.65 0.04 0.31
Matches are distributed among these distances:
17 1 0.03
18 10 0.29
19 3 0.09
20 2 0.06
21 3 0.09
22 14 0.41
23 1 0.03
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.56
Consensus pattern (22 bp):
TTTAATATATGTATCCTATTAT
Found at i:10644785 original size:18 final size:20
Alignment explanation
Indices: 10644754--10644792 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
10644744 GATGCATATT
10644754 AATTTTTGAATTAATT-TAA
1 AATTTTTGAATTAATTATAA
*
10644773 AATTTTT-ATTTAATTATAA
1 AATTTTTGAATTAATTATAA
10644792 A
1 A
10644793 TTATTATGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (20 bp):
AATTTTTGAATTAATTATAA
Found at i:10645048 original size:28 final size:28
Alignment explanation
Indices: 10645008--10645062 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
10644998 CCTTATACAT
10645008 ATATATATATATAAGGTTGGTAAAAAAC
1 ATATATATATATAAGGTTGGTAAAAAAC
10645036 ATATATATATATAAGGTTGGTAAAAAA
1 ATATATATATATAAGGTTGGTAAAAAA
10645063 TATTTATGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.51, C:0.02, G:0.15, T:0.33
Consensus pattern (28 bp):
ATATATATATATAAGGTTGGTAAAAAAC
Found at i:10666702 original size:31 final size:31
Alignment explanation
Indices: 10666667--10666728 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
10666657 TGTCAAGCAA
10666667 GGTTACACTGCTAACTTCACTATGGAGGGTT
1 GGTTACACTGCTAACTTCACTATGGAGGGTT
10666698 GGTTACACTGCTAACTTCACTATGGAGGGTT
1 GGTTACACTGCTAACTTCACTATGGAGGGTT
10666729 TAATATGTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (31 bp):
GGTTACACTGCTAACTTCACTATGGAGGGTT
Found at i:10668306 original size:25 final size:25
Alignment explanation
Indices: 10668271--10668340 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
10668261 TAGGCCCATT
10668271 TTCACAGCTCATGTGAGCATTCTGA
1 TTCACAGCTCATGTGAGCATTCTGA
*
10668296 TTCACAACTCATGTGAGCATTCTGA
1 TTCACAGCTCATGTGAGCATTCTGA
10668321 TTCACAGCTCATGTGAGCAT
1 TTCACAGCTCATGTGAGCAT
10668341 ACATGTACAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (25 bp):
TTCACAGCTCATGTGAGCATTCTGA
Found at i:10669493 original size:15 final size:16
Alignment explanation
Indices: 10669473--10669502 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10669463 TGGTGCCTTC
10669473 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
10669488 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
10669503 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:10672084 original size:2 final size:2
Alignment explanation
Indices: 10672077--10672107 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
10672067 TTATTATTTA
10672077 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10672108 GAGAGAGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10672980 original size:18 final size:18
Alignment explanation
Indices: 10672912--10673016 Score: 95
Period size: 18 Copynumber: 5.9 Consensus size: 18
10672902 ACCGATCAAT
*
10672912 TGATTGATACTGAATAAC
1 TGATTGTTACTGAATAAC
* * *
10672930 TGATTATTATTGAATAAT
1 TGATTGTTACTGAATAAC
* *
10672948 TGATTGTTGCCGAATAAC
1 TGATTGTTACTGAATAAC
* *
10672966 TGACTGTTACTGAATAAA
1 TGATTGTTACTGAATAAC
* * *
10672984 TAATTGTT-CTGATTGAC
1 TGATTGTTACTGAATAAC
*
10673001 TGATTGTTAATGAATA
1 TGATTGTTACTGAATA
10673017 TTACTAATTG
Statistics
Matches: 64, Mismatches: 22, Indels: 2
0.73 0.25 0.02
Matches are distributed among these distances:
17 13 0.20
18 51 0.80
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (18 bp):
TGATTGTTACTGAATAAC
Found at i:10673851 original size:34 final size:34
Alignment explanation
Indices: 10673813--10673880 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
10673803 TGATACAAAG
*
10673813 TATCATAAGGGAGACAGAAGTGTTTGACGAAATA
1 TATCATAAGGGAGACAAAAGTGTTTGACGAAATA
10673847 TATCATAAGGGAGACAAAAGTGTTTGACGAAATA
1 TATCATAAGGGAGACAAAAGTGTTTGACGAAATA
10673881 GTGGATGTAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.43, C:0.09, G:0.25, T:0.24
Consensus pattern (34 bp):
TATCATAAGGGAGACAAAAGTGTTTGACGAAATA
Found at i:10675127 original size:332 final size:332
Alignment explanation
Indices: 10674521--10675186 Score: 1332
Period size: 332 Copynumber: 2.0 Consensus size: 332
10674511 TGGCATACCT
10674521 AAATCCTAAATGGATGACAAAATATGTATGTGTGACTCGTACTCTCTGATGTTAGTAAAAGCCTG
1 AAATCCTAAATGGATGACAAAATATGTATGTGTGACTCGTACTCTCTGATGTTAGTAAAAGCCTG
10674586 AGTTCAAATAGATAAGGAACCGAAAGTTGGTGTGTTGGGTGTACGACTTTTGTAGTATGTAGCTT
66 AGTTCAAATAGATAAGGAACCGAAAGTTGGTGTGTTGGGTGTACGACTTTTGTAGTATGTAGCTT
10674651 CATTCAAAACAGTGGAATTCATAGCCCAAAACATGGCTAAATGATATCCTCTCATTGGCATTACA
131 CATTCAAAACAGTGGAATTCATAGCCCAAAACATGGCTAAATGATATCCTCTCATTGGCATTACA
10674716 TGTTTGATAAAAGGTAAATGTGACCACAGGTCGTCCATCTTTGTGATGGATAACTTGATCACTAT
196 TGTTTGATAAAAGGTAAATGTGACCACAGGTCGTCCATCTTTGTGATGGATAACTTGATCACTAT
10674781 TTGATAGTGATTGATTTTTCATGAAGGAAGATGTAATGGTTACCATGAGATAAAATAAGATTATA
261 TTGATAGTGATTGATTTTTCATGAAGGAAGATGTAATGGTTACCATGAGATAAAATAAGATTATA
10674846 TTGGGAG
326 TTGGGAG
10674853 AAATCCTAAATGGATGACAAAATATGTATGTGTGACTCGTACTCTCTGATGTTAGTAAAAGCCTG
1 AAATCCTAAATGGATGACAAAATATGTATGTGTGACTCGTACTCTCTGATGTTAGTAAAAGCCTG
10674918 AGTTCAAATAGATAAGGAACCGAAAGTTGGTGTGTTGGGTGTACGACTTTTGTAGTATGTAGCTT
66 AGTTCAAATAGATAAGGAACCGAAAGTTGGTGTGTTGGGTGTACGACTTTTGTAGTATGTAGCTT
10674983 CATTCAAAACAGTGGAATTCATAGCCCAAAACATGGCTAAATGATATCCTCTCATTGGCATTACA
131 CATTCAAAACAGTGGAATTCATAGCCCAAAACATGGCTAAATGATATCCTCTCATTGGCATTACA
10675048 TGTTTGATAAAAGGTAAATGTGACCACAGGTCGTCCATCTTTGTGATGGATAACTTGATCACTAT
196 TGTTTGATAAAAGGTAAATGTGACCACAGGTCGTCCATCTTTGTGATGGATAACTTGATCACTAT
10675113 TTGATAGTGATTGATTTTTCATGAAGGAAGATGTAATGGTTACCATGAGATAAAATAAGATTATA
261 TTGATAGTGATTGATTTTTCATGAAGGAAGATGTAATGGTTACCATGAGATAAAATAAGATTATA
10675178 TTGGGAG
326 TTGGGAG
10675185 AA
1 AA
10675187 CGAATATTAT
Statistics
Matches: 334, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
332 334 1.00
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (332 bp):
AAATCCTAAATGGATGACAAAATATGTATGTGTGACTCGTACTCTCTGATGTTAGTAAAAGCCTG
AGTTCAAATAGATAAGGAACCGAAAGTTGGTGTGTTGGGTGTACGACTTTTGTAGTATGTAGCTT
CATTCAAAACAGTGGAATTCATAGCCCAAAACATGGCTAAATGATATCCTCTCATTGGCATTACA
TGTTTGATAAAAGGTAAATGTGACCACAGGTCGTCCATCTTTGTGATGGATAACTTGATCACTAT
TTGATAGTGATTGATTTTTCATGAAGGAAGATGTAATGGTTACCATGAGATAAAATAAGATTATA
TTGGGAG
Found at i:10675766 original size:26 final size:26
Alignment explanation
Indices: 10675730--10675788 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 26
10675720 CATTTTCTCG
10675730 AAATTTTACTAAGGGCAAAATCATCA
1 AAATTTTACTAAGGGCAAAATCATCA
* * * *
10675756 AAATTTTACTAGGGGTAAAATCGTTA
1 AAATTTTACTAAGGGCAAAATCATCA
10675782 AAATTTT
1 AAATTTT
10675789 GTTAGGGATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (26 bp):
AAATTTTACTAAGGGCAAAATCATCA
Found at i:10675794 original size:26 final size:26
Alignment explanation
Indices: 10675730--10675802 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
10675720 CATTTTCTCG
*
10675730 AAATTTTACTAAGGG-CAAAATCATCA
1 AAATTTTACT-AGGGATAAAATCATCA
* * *
10675756 AAATTTTACTAGGGGTAAAATCGTTA
1 AAATTTTACTAGGGATAAAATCATCA
**
10675782 AAATTTTGTTAGGGATAAAAT
1 AAATTTTACTAGGGATAAAAT
10675803 AGGAATGAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.10
26 36 0.90
ACGTcount: A:0.42, C:0.08, G:0.16, T:0.33
Consensus pattern (26 bp):
AAATTTTACTAGGGATAAAATCATCA
Found at i:10686776 original size:15 final size:16
Alignment explanation
Indices: 10686753--10686783 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
10686743 ACGTATTTAA
10686753 TTAATTTTTTTAAAAT
1 TTAATTTTTTTAAAAT
10686769 TTAA-TTTTTTAAAAT
1 TTAATTTTTTTAAAAT
10686784 ATTTTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTAATTTTTTTAAAAT
Found at i:10688450 original size:2 final size:2
Alignment explanation
Indices: 10688439--10688476 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
10688429 AAGTTAAACT
10688439 TA TA -A TA TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10688477 AGTTTGTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 32 0.94
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:10688461 original size:17 final size:17
Alignment explanation
Indices: 10688439--10688477 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
10688429 AAGTTAAACT
10688439 TATAATATATATATATA
1 TATAATATATATATATA
10688456 TATAATATATATATATA
1 TATAATATATATATATA
10688473 TATAA
1 TATAA
10688478 GTTTGTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
TATAATATATATATATA
Found at i:10688463 original size:15 final size:15
Alignment explanation
Indices: 10688445--10688474 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
10688435 AACTTATAAT
10688445 ATATATATATATATA
1 ATATATATATATATA
10688460 ATATATATATATATA
1 ATATATATATATATA
10688475 TAAGTTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATATATATATATATA
Found at i:10689114 original size:2 final size:2
Alignment explanation
Indices: 10689107--10689154 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
10689097 AATATTTAAA
10689107 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10689149 AT -T AT A
1 AT AT AT A
10689155 AGATCTAGTC
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 44 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10689978 original size:26 final size:25
Alignment explanation
Indices: 10689908--10689978 Score: 74
Period size: 26 Copynumber: 2.9 Consensus size: 25
10689898 GATTAAAAAT
* *
10689908 AAATAAA-AA-ATTTAAATATATTA
1 AAATAAATAATATTTAAATTTATGA
* **
10689931 AAATAAATAGTATTTATCTTTATGA
1 AAATAAATAATATTTAAATTTATGA
10689956 AAATTAAATAATATTTAAATTTA
1 AAA-TAAATAATATTTAAATTTA
10689979 AAATAATTTT
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
23 7 0.19
24 1 0.03
25 13 0.35
26 16 0.43
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (25 bp):
AAATAAATAATATTTAAATTTATGA
Found at i:10690391 original size:31 final size:31
Alignment explanation
Indices: 10690353--10690419 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
10690343 CTTTCCTTTT
10690353 TCTTTTTTAAAAATAAAAATAAAAATTCTAA
1 TCTTTTTTAAAAATAAAAATAAAAATTCTAA
10690384 TCTTTTTTAAAAATAAAAATAAAAATTCTAA
1 TCTTTTTTAAAAATAAAAATAAAAATTCTAA
10690415 -CTTTT
1 TCTTTT
10690420 GAATTCATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 5 0.14
31 31 0.86
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (31 bp):
TCTTTTTTAAAAATAAAAATAAAAATTCTAA
Found at i:10698412 original size:41 final size:40
Alignment explanation
Indices: 10698351--10698436 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 40
10698341 TATAATCACT
* *
10698351 TTTTATTATATTTTTAATTTGTGTATTGTTTTAAGAATTG
1 TTTTAGTATATTTTTAATTTGTGTATTATTTTAAGAATTG
* * * * *
10698391 TTTTAGTATCATTTTTTATTTGTTTCTTATTTTAATATTTG
1 TTTTAGTAT-ATTTTTAATTTGTGTATTATTTTAAGAATTG
10698432 TTTTA
1 TTTTA
10698437 AATGTATTTG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 8 0.21
41 30 0.79
ACGTcount: A:0.22, C:0.02, G:0.09, T:0.66
Consensus pattern (40 bp):
TTTTAGTATATTTTTAATTTGTGTATTATTTTAAGAATTG
Found at i:10702511 original size:2 final size:2
Alignment explanation
Indices: 10702504--10702535 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
10702494 CATAAATTTC
10702504 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10702536 GAGATAACCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10706448 original size:42 final size:43
Alignment explanation
Indices: 10706310--10706451 Score: 146
Period size: 43 Copynumber: 3.3 Consensus size: 43
10706300 AGGCCGCTAT
* *
10706310 AGAACATGACCTTTAGTGACGCTTTTTTTACAAACGCTACTATA
1 AGAACATGACCTTTAGTGACGCTTTTCTCACAAACGCTACTA-A
* * * * * *
10706354 A-AACATGACCTTTAGTGGCACTTTTCCCACAAATGCCACTAT
1 AGAACATGACCTTTAGTGACGCTTTTCTCACAAACGCTACTAA
* * * *
10706396 AGAATA-GACCTTTAGCGATGCTTTTCTCACAAA-GCTGCTAA
1 AGAACATGACCTTTAGTGACGCTTTTCTCACAAACGCTACTAA
10706437 AGAACATGACCTTTA
1 AGAACATGACCTTTA
10706452 AAAAAATATT
Statistics
Matches: 78, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
41 10 0.13
42 31 0.40
43 36 0.46
44 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.30
Consensus pattern (43 bp):
AGAACATGACCTTTAGTGACGCTTTTCTCACAAACGCTACTAA
Found at i:10706641 original size:35 final size:34
Alignment explanation
Indices: 10706589--10706654 Score: 80
Period size: 35 Copynumber: 1.9 Consensus size: 34
10706579 CTATTAAAAT
* *
10706589 TTTAACTTTAAAATTAAATCTAA-AAATTAATGAA
1 TTTAAATTTAAAATTAAA-ATAATAAATTAATGAA
*
10706623 TTTAAATTTAGAATTTAAAATAATAAATTAAT
1 TTTAAATTTA-AAATTAAAATAATAAATTAAT
10706655 AACACAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
34 12 0.44
35 15 0.56
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (34 bp):
TTTAAATTTAAAATTAAAATAATAAATTAATGAA
Found at i:10706709 original size:12 final size:12
Alignment explanation
Indices: 10706694--10706756 Score: 54
Period size: 12 Copynumber: 5.1 Consensus size: 12
10706684 CAAGTTATCT
*
10706694 TAAATATTAAAA
1 TAAAAATTAAAA
*
10706706 TAAAAATAAAAA
1 TAAAAATTAAAA
*
10706718 TAAAAATTTAGAA
1 TAAAAA-TTAAAA
* *
10706731 TCAAAACTAAAA
1 TAAAAATTAAAA
*
10706743 TAAATAATAAAAA
1 TAAA-AATTAAAA
10706756 T
1 T
10706757 TAGATTAAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
12 23 0.59
13 16 0.41
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.25
Consensus pattern (12 bp):
TAAAAATTAAAA
Found at i:10708491 original size:2 final size:2
Alignment explanation
Indices: 10708486--10708510 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10708476 AGGCTTAATT
10708486 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
10708511 TGAATATAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10712398 original size:26 final size:27
Alignment explanation
Indices: 10712368--10712431 Score: 69
Period size: 27 Copynumber: 2.3 Consensus size: 27
10712358 CAATACACAA
* *
10712368 ATTAAAAAAATAATAAAAT-TGATTAT-
1 ATTAAAAAAA-AATAAAATGTAAATATG
10712394 ATTAAAATTAAAAATAAAATGTAAATATG
1 ATTAAAA--AAAAATAAAATGTAAATATG
10712423 ATTAAAAAA
1 ATTAAAAAA
10712432 TATATATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
26 7 0.22
27 10 0.31
28 8 0.25
29 7 0.22
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (27 bp):
ATTAAAAAAAAATAAAATGTAAATATG
Found at i:10717935 original size:40 final size:40
Alignment explanation
Indices: 10717866--10718042 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
10717856 ACCCAAGCAT
*
10717866 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
10717905 CTTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
10717945 CTTCGGGTCTTAGCCCGGATATAATCAA-TAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
10717985 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
10718025 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
10718043 TTATCATCCG
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 98 0.83
41 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:10726085 original size:40 final size:40
Alignment explanation
Indices: 10726018--10726194 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
10726008 ACCCAAGCAT
*
10726018 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
10726057 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * *
10726097 CTTCGGGTCTTAGCCCAGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
10726137 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
10726177 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
10726195 TTATCATCCG
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 102 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:10728712 original size:21 final size:20
Alignment explanation
Indices: 10728688--10728726 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
10728678 GTGTAAATGT
10728688 AGTAACGTAATTTTCATTTTA
1 AGTAACGTAATTTT-ATTTTA
**
10728709 AGTAATTTAATTTTATTT
1 AGTAACGTAATTTTATTT
10728727 ATATGATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (20 bp):
AGTAACGTAATTTTATTTTA
Found at i:10733719 original size:22 final size:22
Alignment explanation
Indices: 10733691--10733732 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
10733681 GAAAGAAGAG
10733691 AAGGAAAAAAAAAACAAAAATA
1 AAGGAAAAAAAAAACAAAAATA
*
10733713 AAGGAAAAATAAAACAAAAA
1 AAGGAAAAAAAAAACAAAAA
10733733 GGGAAAATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.81, C:0.05, G:0.10, T:0.05
Consensus pattern (22 bp):
AAGGAAAAAAAAAACAAAAATA
Found at i:10745278 original size:11 final size:11
Alignment explanation
Indices: 10745262--10745288 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
10745252 ATTTTAATTC
10745262 TTTTTCTTTTA
1 TTTTTCTTTTA
10745273 TTTTTCTTTTA
1 TTTTTCTTTTA
10745284 TTTTT
1 TTTTT
10745289 TTCTTAAGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTCTTTTA
Found at i:10758177 original size:19 final size:19
Alignment explanation
Indices: 10758120--10758177 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
10758110 CTGTACATAA
* * *
10758120 GTATGTTGTATCTGTATAT
1 GTATTTTGTATCTATATTT
* *
10758139 G-ATTTTGAATACTCTATTT
1 GTATTTTGTAT-CTATATTT
10758158 GTATTTTGTATCTATATTT
1 GTATTTTGTATCTATATTT
10758177 G
1 G
10758178 GGGGTTGGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
18 7 0.23
19 16 0.52
20 8 0.26
ACGTcount: A:0.22, C:0.07, G:0.16, T:0.55
Consensus pattern (19 bp):
GTATTTTGTATCTATATTT
Found at i:10768843 original size:16 final size:16
Alignment explanation
Indices: 10768812--10768849 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
10768802 CCCTTTCATC
10768812 ATTTTTTTTACTTTTT
1 ATTTTTTTTACTTTTT
10768828 ATTTTATTTTAC-TTTT
1 ATTTT-TTTTACTTTTT
10768844 ATTTTT
1 ATTTTT
10768850 AATTTTCTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.05
16 14 0.67
17 6 0.29
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (16 bp):
ATTTTTTTTACTTTTT
Found at i:10768849 original size:17 final size:18
Alignment explanation
Indices: 10768812--10768868 Score: 68
Period size: 17 Copynumber: 3.3 Consensus size: 18
10768802 CCCTTTCATC
10768812 ATTTT-TTTTACTTTT-T
1 ATTTTATTTTACTTTTAT
10768828 ATTTTATTTTACTTTTAT
1 ATTTTATTTTACTTTTAT
10768846 -TTTTAATTTT-CTCTTTAT
1 ATTTT-ATTTTACT-TTTAT
10768864 ATTTT
1 ATTTT
10768869 TGTGTATTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
16 5 0.14
17 16 0.44
18 11 0.31
19 4 0.11
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.75
Consensus pattern (18 bp):
ATTTTATTTTACTTTTAT
Found at i:10780298 original size:30 final size:30
Alignment explanation
Indices: 10780239--10780301 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
10780229 ACTTAACAAG
* *
10780239 CAAATGCCTCTGAAATAATAATAAAATTAA
1 CAAATGCCTCTAAAATAATAAGAAAATTAA
* **
10780269 CAAATGCCTTTAAAATAATAAGATTATTAA
1 CAAATGCCTCTAAAATAATAAGAAAATTAA
10780299 CAA
1 CAA
10780302 TAAAATAAGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAAGAAAATTAA
Found at i:10780322 original size:19 final size:20
Alignment explanation
Indices: 10780285--10780322 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
10780275 CCTTTAAAAT
10780285 AATAAGATTATTAACAATAA
1 AATAAGATTATTAACAATAA
10780305 AATAAG-TT-TTATACAATA
1 AATAAGATTATTA-ACAATA
10780323 TCCAAACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.18
19 8 0.47
20 6 0.35
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.34
Consensus pattern (20 bp):
AATAAGATTATTAACAATAA
Found at i:10780356 original size:22 final size:22
Alignment explanation
Indices: 10780331--10780373 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
10780321 TATCCAAACA
10780331 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
10780353 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
10780374 AATAGAGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:10780386 original size:22 final size:22
Alignment explanation
Indices: 10780338--10780386 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
10780328 ACAATAACAA
* *
10780338 TAAAATAGTAGCAACATAATAG
1 TAAAATAGTAGCAAAATAAGAG
*
10780360 TAAAATGGTAGCAAAATAGAGAG
1 TAAAATAGTAGCAAAATA-AGAG
10780383 -AAAA
1 TAAAA
10780387 CAACAAGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 20 0.87
23 3 0.13
ACGTcount: A:0.57, C:0.06, G:0.18, T:0.18
Consensus pattern (22 bp):
TAAAATAGTAGCAAAATAAGAG
Found at i:10782175 original size:20 final size:20
Alignment explanation
Indices: 10782150--10782199 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
10782140 TCGAAGGTAC
10782150 ACGGCTTGGCATACG-GACGT
1 ACGGCTTGGCATACGAG-CGT
10782170 ACGGCTTGGCATACGAGCGT
1 ACGGCTTGGCATACGAGCGT
10782190 ACGGCTTGGC
1 ACGGCTTGGC
10782200 CGTGTGACCG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.18, C:0.26, G:0.36, T:0.20
Consensus pattern (20 bp):
ACGGCTTGGCATACGAGCGT
Found at i:10784294 original size:29 final size:29
Alignment explanation
Indices: 10784261--10784328 Score: 109
Period size: 29 Copynumber: 2.3 Consensus size: 29
10784251 ATCGACAAAT
*
10784261 GAAAAGGGATAGTTTCGGCTATCGAATAC
1 GAAAAGGGATAGCTTCGGCTATCGAATAC
* *
10784290 GAAAAGGGATAGCTTCGGCTATCGACTAT
1 GAAAAGGGATAGCTTCGGCTATCGAATAC
10784319 GAAAAGGGAT
1 GAAAAGGGAT
10784329 GGTGACAATC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.35, C:0.13, G:0.29, T:0.22
Consensus pattern (29 bp):
GAAAAGGGATAGCTTCGGCTATCGAATAC
Found at i:10784342 original size:29 final size:29
Alignment explanation
Indices: 10784314--10784474 Score: 107
Period size: 30 Copynumber: 5.4 Consensus size: 29
10784304 TCGGCTATCG
10784314 ACTATGAAAAGGGATGGTGACAATCATCGA
1 ACTATGAAAAGGGATGGTGACAATCATC-A
* * *
10784344 ACTATGAAAAAGGATGGCTTCGGCTATC-T-A
1 ACTATGAAAAGGGATGG--T-GACAATCATCA
* *
10784374 ACTATGAAAAGGGATGGCTTTAGC--T-TTCA
1 ACTATGAAAAGGGATGG--TGA-CAATCATCA
* * *
10784403 GATTATGAAAAGGGATGGTGACGACCATCA
1 -ACTATGAAAAGGGATGGTGACAATCATCA
* *
10784433 ACAATGAAAAGGGATGGTGACAACCATCAA
1 ACTATGAAAAGGGATGGTGACAATCATC-A
*
10784463 ATTATGAAAAGG
1 ACTATGAAAAGG
10784475 AATAGCTTCG
Statistics
Matches: 105, Mismatches: 15, Indels: 22
0.74 0.11 0.15
Matches are distributed among these distances:
27 1 0.01
28 4 0.04
29 26 0.25
30 67 0.64
32 2 0.02
33 5 0.05
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (29 bp):
ACTATGAAAAGGGATGGTGACAATCATCA
Found at i:10784499 original size:89 final size:90
Alignment explanation
Indices: 10784290--10784507 Score: 230
Period size: 89 Copynumber: 2.4 Consensus size: 90
10784280 TATCGAATAC
* * *
10784290 GAAAAGGGATAGCTTCGGCTATCG-ACTATGAAAAGGGATGGTGACAATCATCGAACTATGAAAA
1 GAAAAGGGATAGCTTCGGTTATCGAACTATGAAAAGGGATGGTGACAACCATCGAACAATGAAAA
* ** * *
10784354 AGGATGGCTTCGGCTATCTAACTAT
66 AGGATGGCTACAACCATCAAACTAT
* * * * *
10784379 GAAAAGGGATGGCTTTAGCTT-TC-AGATTATGAAAAGGGATGGTGACGACCATC-AACAATGAA
1 GAAAAGGGATAGC-TTCGGTTATCGA-ACTATGAAAAGGGATGGTGACAACCATCGAACAATGAA
* *
10784441 AAGGGATGG-TGACAACCATCAAATTAT
64 AAAGGATGGCT-ACAACCATCAAACTAT
*
10784468 GAAAAGGAATAGCTTCGGTTATCGAACTATGAAAAGGGAT
1 GAAAAGGGATAGCTTCGGTTATCGAACTATGAAAAGGGAT
10784508 AACTTCTGTT
Statistics
Matches: 103, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
88 6 0.06
89 67 0.65
90 30 0.29
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (90 bp):
GAAAAGGGATAGCTTCGGTTATCGAACTATGAAAAGGGATGGTGACAACCATCGAACAATGAAAA
AGGATGGCTACAACCATCAAACTAT
Found at i:10784532 original size:30 final size:30
Alignment explanation
Indices: 10784462--10784538 Score: 91
Period size: 30 Copynumber: 2.5 Consensus size: 30
10784452 ACAACCATCA
* *
10784462 AATTATGAAAAGGAATAGCTTCGGTTATCG
1 AATTATGAAAAGGGATAACTTCGGTTATCG
* * *
10784492 AACTATGAAAAGGGATAACTTCTGTTATTG
1 AATTATGAAAAGGGATAACTTCGGTTATCG
*
10784522 AATTACGAAAAAGGGAT
1 AATTATG-AAAAGGGAT
10784539 GGGTTAACCA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 30 0.77
31 9 0.23
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (30 bp):
AATTATGAAAAGGGATAACTTCGGTTATCG
Found at i:10784532 original size:119 final size:120
Alignment explanation
Indices: 10784317--10784540 Score: 294
Period size: 119 Copynumber: 1.9 Consensus size: 120
10784307 GCTATCGACT
* * * *
10784317 ATGAAAAGGGATGGTGACAATCATCGAACTATGAAAAAGGATGGCTTCGGCTATCTAACTATGAA
1 ATGAAAAGGGATGGTGACAACCATCAAACTATGAAAAAGGATAGCTTCGGCTATCGAACTATGAA
** *
10784382 AAGGGATGGCTTTAGCTTTCAGATTATG-AAAAGGGATGGTGACGACCATCAACA
66 AAGGGATAACTTTAGCTTTCAGATTACGAAAAAGGGATGGTGACGACCATCAACA
* *
10784436 ATGAAAAGGGATGGTGACAACCATCAAATTATG-AAAAGGAATAGCTTCGGTTATCGAACTATGA
1 ATGAAAAGGGATGGTGACAACCATCAAACTATGAAAAAGG-ATAGCTTCGGCTATCGAACTATGA
* *
10784500 AAAGGGATAACTTCT-GTTATTGA-ATTACGAAAAAGGGATGG
65 AAAGGGATAACTT-TAGCT-TTCAGATTACGAAAAAGGGATGG
10784541 GTTAACCATC
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
118 6 0.07
119 69 0.77
120 15 0.17
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.24
Consensus pattern (120 bp):
ATGAAAAGGGATGGTGACAACCATCAAACTATGAAAAAGGATAGCTTCGGCTATCGAACTATGAA
AAGGGATAACTTTAGCTTTCAGATTACGAAAAAGGGATGGTGACGACCATCAACA
Found at i:10786615 original size:18 final size:18
Alignment explanation
Indices: 10786592--10786626 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
10786582 ATTGTTTGTA
10786592 CTCTCTATTATCATTTTG
1 CTCTCTATTATCATTTTG
10786610 CTCTCTATTATCATTTT
1 CTCTCTATTATCATTTT
10786627 AGTTTCAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.23, G:0.03, T:0.57
Consensus pattern (18 bp):
CTCTCTATTATCATTTTG
Found at i:10789715 original size:6 final size:6
Alignment explanation
Indices: 10789667--10789700 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
10789657 CAACAGAATC
10789667 TTCTTT TTCTTTT TTCTTT TTCTTT TTCTTT TTC
1 TTCTTT TTC-TTT TTCTTT TTCTTT TTCTTT TTC
10789701 AGCAATTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (6 bp):
TTCTTT
Found at i:10797046 original size:20 final size:20
Alignment explanation
Indices: 10797023--10797083 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 20
10797013 CCATTGTACT
*
10797023 TTGTATTGAGTGATTTTACA
1 TTGTATTGAGTGATTCTACA
* *
10797043 TTGTAATTG-GTTTG-TTGTACT
1 TTGT-ATTGAG--TGATTCTACA
10797064 TTGTATTGAGTGATTCTACA
1 TTGTATTGAGTGATTCTACA
10797084 CTATAGTTGG
Statistics
Matches: 32, Mismatches: 4, Indels: 10
0.70 0.09 0.22
Matches are distributed among these distances:
19 2 0.06
20 14 0.44
21 14 0.44
22 2 0.06
ACGTcount: A:0.21, C:0.07, G:0.21, T:0.51
Consensus pattern (20 bp):
TTGTATTGAGTGATTCTACA
Found at i:10797094 original size:41 final size:41
Alignment explanation
Indices: 10797016--10797095 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
10797006 TATTTGCCCA
* * *
10797016 TTGTACTTTGTATTGAGTGATTTTACATTGTAATTGGTTTG
1 TTGTACTTTGTATTGAGTGATTCTACACTATAATTGGTTTG
*
10797057 TTGTACTTTGTATTGAGTGATTCTACACTATAGTTGGTT
1 TTGTACTTTGTATTGAGTGATTCTACACTATAATTGGTT
10797096 AAACATACAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.20, C:0.07, G:0.21, T:0.51
Consensus pattern (41 bp):
TTGTACTTTGTATTGAGTGATTCTACACTATAATTGGTTTG
Found at i:10800812 original size:251 final size:251
Alignment explanation
Indices: 10800369--10800871 Score: 979
Period size: 251 Copynumber: 2.0 Consensus size: 251
10800359 AACATATATC
10800369 TACCGCACATTGAAGTAGTACCTTTGTACATTGATAATGTTTGTTGACCGGAGAGCGTCCAATGT
1 TACCGCACATTGAAGTAGTACCTTTGTACATTGATAATGTTTGTTGACCGGAGAGCGTCCAATGT
*
10800434 TGGTAACGTGTTTAAAGTATTTAATTGGAAACTGTCTAAGTGTCAAAATAATTATTTTATTTATT
66 TGGTAACGTATTTAAAGTATTTAATTGGAAACTGTCTAAGTGTCAAAATAATTATTTTATTTATT
10800499 TCAGTTTATATTTTAGTTATTTATATATAAAAAATTTTATTTAATTACTTATGTTATTATTTTAT
131 TCAGTTTATATTTTAGTTATTTATATATAAAAAATTTTATTTAATTACTTATGTTATTATTTTAT
10800564 TACGAAATAATTAATTTATCATTAAAATATGTAACTTTCTAAATGGCAGTCCAATG
196 TACGAAATAATTAATTTATCATTAAAATATGTAACTTTCTAAATGGCAGTCCAATG
*
10800620 TACCGCACATTGAAGTTGTACCTTTGTACATTGATAATGTTTGTTGACCGGAGAGCGTCCAATGT
1 TACCGCACATTGAAGTAGTACCTTTGTACATTGATAATGTTTGTTGACCGGAGAGCGTCCAATGT
*
10800685 TGGTAACGTATTTAAAGTGTTTAATTGGAAACTGTCTAAGTGTCAAAATAATTATTTTATTTATT
66 TGGTAACGTATTTAAAGTATTTAATTGGAAACTGTCTAAGTGTCAAAATAATTATTTTATTTATT
10800750 TCAGTTTATATTTTAGTTATTTATATATAAAAAATTTTATTTAATTACTTATGTTATTATTTTAT
131 TCAGTTTATATTTTAGTTATTTATATATAAAAAATTTTATTTAATTACTTATGTTATTATTTTAT
10800815 TACGAAATAATTAATTTATCATTAAAATATGTAACTTTCTAAATGGCAGTCCAATG
196 TACGAAATAATTAATTTATCATTAAAATATGTAACTTTCTAAATGGCAGTCCAATG
10800871 T
1 T
10800872 TGTCATTTAA
Statistics
Matches: 249, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
251 249 1.00
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (251 bp):
TACCGCACATTGAAGTAGTACCTTTGTACATTGATAATGTTTGTTGACCGGAGAGCGTCCAATGT
TGGTAACGTATTTAAAGTATTTAATTGGAAACTGTCTAAGTGTCAAAATAATTATTTTATTTATT
TCAGTTTATATTTTAGTTATTTATATATAAAAAATTTTATTTAATTACTTATGTTATTATTTTAT
TACGAAATAATTAATTTATCATTAAAATATGTAACTTTCTAAATGGCAGTCCAATG
Found at i:10806757 original size:21 final size:22
Alignment explanation
Indices: 10806731--10806771 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
10806721 TACTTGAAAC
10806731 AGGGGC-ACACGCCCATGTGGG
1 AGGGGCAACACGCCCATGTGGG
*
10806752 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCATGTG
10806772 ACCAATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.20, C:0.29, G:0.41, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGCCCATGTGGG
Found at i:10808047 original size:46 final size:45
Alignment explanation
Indices: 10807989--10808164 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
10807979 ACATCTCGTA
*
10807989 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TACGTCACGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGT-ACAAG
* * * *
10808035 GCCGATACATGTCCCAGACATGTCTCACACTAGCTCTCGTTTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG-TACAAG
* *
10808081 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA-ATATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTACA-A-G
* *
10808129 GCTGATGCATATCCCAGACATGTCTTACACTAGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
10808165 ACAATAGCCC
Statistics
Matches: 110, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
46 58 0.53
47 31 0.28
48 21 0.19
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTACAAG
Found at i:10808144 original size:94 final size:92
Alignment explanation
Indices: 10807991--10808164 Score: 235
Period size: 94 Copynumber: 1.9 Consensus size: 92
10807981 ATCTCGTAGC
* * *
10807991 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCACGAGGCCGATACATGTCCCAGACAT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCAAGAGGCCGATACATATCCCAGACAT
10808056 GTCTCACACTAGCTCTCGTTTCAATGT
66 GTCTCACACTAGCTCTCGTTTCAATGT
* * *
10808083 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CAT-AATATGGCTGATGCATATCCCAG
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACATCAAGA-GGCCGATACATATCCCAG
*
10808146 ACATGTCTTACACTAGCTC
62 ACATGTCTCACACTAGCTC
10808165 ACAATAGCCC
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
92 5 0.07
93 16 0.23
94 49 0.69
95 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCAAGAGGCCGATACATATCCCAGACAT
GTCTCACACTAGCTCTCGTTTCAATGT
Found at i:10815116 original size:47 final size:46
Alignment explanation
Indices: 10815043--10815310 Score: 156
Period size: 47 Copynumber: 5.7 Consensus size: 46
10815033 TGTAATGCTA
* *
10815043 ATGCCATATCCCAGACATGGTATTACATTGACTCATTCATCAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACATTGACTCA-TCATCAAGTCG
* * * * *
10815090 ATGCCATGTCCCAGACATGGTCTTACACTAACT-ATCAAAATCGAGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATTGACTCATC---ATC-AAGTCG
* * **
10815139 ACGCCATGTCCCAGACATGGTCTTACATTAGCTCTCA-CATATCCGTGTCG
1 ATGCCATGTCCCAGACATGGTCTTACATT-G-ACTCATC--AT-CAAGTCG
* * * * * *
10815189 ATGCCATGTCCTAGACAGGGTCTTACACTGACACATC-TCGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACATTGACTCATCATC-AAGTCG
*
10815235 ATG-CATGTCCCAGACAT-GTCTTACACT-AGCTC-TCATTTCAA-TACCG
1 ATGCCATGTCCCAGACATGGTCTTACATTGA-CTCATCA--TCAAGT--CG
* *
10815281 ATGCCATGTCCCAAACATGGGCTTACATTG
1 ATGCCATGTCCCAGACATGGTCTTACATTG
10815311 GCTCCCATAA
Statistics
Matches: 169, Mismatches: 33, Indels: 36
0.71 0.14 0.15
Matches are distributed among these distances:
43 3 0.02
44 12 0.07
45 16 0.09
46 15 0.09
47 42 0.25
48 14 0.08
49 32 0.19
50 30 0.18
51 4 0.02
52 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGGTCTTACATTGACTCATCATCAAGTCG
Found at i:10820166 original size:29 final size:29
Alignment explanation
Indices: 10820131--10820287 Score: 251
Period size: 29 Copynumber: 5.4 Consensus size: 29
10820121 TGTGTGTACC
* *
10820131 ATGTGAAAAAGGATAGCTTTGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
*
10820160 ATATGAAAAGGGATAGCTTCGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
*
10820189 ATGTGAAAAGGGATAGCTTCGGCTATTGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
*
10820218 ATGTAAAAAGGGGATAGCTTCGGCTATCGA
1 ATGTGAAAA-GGGATAGCTTCGGCTATCGA
*
10820248 ATGTGAAAAGGGATAGCTTTGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
10820277 ATGTGAAAAGG
1 ATGTGAAAAGG
10820288 TTAGGTATAC
Statistics
Matches: 118, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
29 91 0.77
30 27 0.23
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (29 bp):
ATGTGAAAAGGGATAGCTTCGGCTATCGA
Found at i:10820255 original size:59 final size:59
Alignment explanation
Indices: 10820131--10820287 Score: 262
Period size: 59 Copynumber: 2.7 Consensus size: 59
10820121 TGTGTGTACC
* *
10820131 ATGTGAAAAAGGATAGCTTTGGCTATCGAATATGAAAA-GGGATAGCTTCGGCTATCGA
1 ATGTGAAAAGGGATAGCTTTGGCTATCGAATGTGAAAAGGGGATAGCTTCGGCTATCGA
* * *
10820189 ATGTGAAAAGGGATAGCTTCGGCTATTGAATGTAAAAAGGGGATAGCTTCGGCTATCGA
1 ATGTGAAAAGGGATAGCTTTGGCTATCGAATGTGAAAAGGGGATAGCTTCGGCTATCGA
10820248 ATGTGAAAAGGGATAGCTTTGGCTATCGAATGTGAAAAGG
1 ATGTGAAAAGGGATAGCTTTGGCTATCGAATGTGAAAAGG
10820288 TTAGGTATAC
Statistics
Matches: 90, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
58 33 0.37
59 57 0.63
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (59 bp):
ATGTGAAAAGGGATAGCTTTGGCTATCGAATGTGAAAAGGGGATAGCTTCGGCTATCGA
Found at i:10820360 original size:32 final size:32
Alignment explanation
Indices: 10820280--10820502 Score: 252
Period size: 32 Copynumber: 6.9 Consensus size: 32
10820270 CTATCGAATG
* * *
10820280 TGAAAAGGTTAGGTATACTTTGTGTATACCACA
1 TGAAAAGGTTATGTATACTTTGTGTGTA-CACT
*
10820313 TGAAAAGGGTT-TGTACACTTTGTGTGTACACT
1 TGAAAA-GGTTATGTATACTTTGTGTGTACACT
* * *
10820345 TGAAAAGGTTATGTACATTTTGTGTGTACATT
1 TGAAAAGGTTATGTATACTTTGTGTGTACACT
*
10820377 TGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGTTATGTATACTTTGTGTGTACACT
**
10820409 TGAAAAGGAAATGTATACTTTGTGTGTACACT
1 TGAAAAGGTTATGTATACTTTGTGTGTACACT
** *
10820441 TGAAAAGGAAATGTATACTTTGTGTATAC-CAT
1 TGAAAAGGTTATGTATACTTTGTGTGTACAC-T
** *
10820473 ATGAAAAGGAAAGGTATACTTTGTGTGTAC
1 -TGAAAAGGTTATGTATACTTTGTGTGTAC
10820503 CACTCAGAAA
Statistics
Matches: 172, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
31 5 0.03
32 116 0.67
33 47 0.27
34 4 0.02
ACGTcount: A:0.32, C:0.10, G:0.22, T:0.36
Consensus pattern (32 bp):
TGAAAAGGTTATGTATACTTTGTGTGTACACT
Found at i:10820543 original size:65 final size:64
Alignment explanation
Indices: 10820336--10820552 Score: 159
Period size: 64 Copynumber: 3.4 Consensus size: 64
10820326 TACACTTTGT
* ** * * * * * ** * * * *
10820336 GTGTACACTTGAAAAGGTTATGTACATTTTGTGTGTACATTTGAAAAGGTTATGTACACTTTGT
1 GTGTACATTTGAAAAGGAAAGGTATACTTTGTGTGTACACTAGAAAAGGAAACGTACACCTCGA
* * * * * * * *
10820400 GTGTACACTTGAAAAGGAAATGTATACTTTGTGTGTACACTTGAAAAGGAAATGTATACTTTGT
1 GTGTACATTTGAAAAGGAAAGGTATACTTTGTGTGTACACTAGAAAAGGAAACGTACACCTCGA
* *
10820464 GTATACCATATGAAAAGGAAAGGTATACTTTGTGTGTACCACTCAG-AAA-GAAACGTACACCTC
1 GTGTA-CATTTGAAAAGGAAAGGTATACTTTGTGTGTA-CACT-AGAAAAGGAAACGTACACCTC
10820527 GA
63 GA
*
10820529 GTGTACAATTTGAAAAGAAAAGGT
1 GTGTAC-ATTTGAAAAGGAAAGGT
10820553 CCATCAAAAA
Statistics
Matches: 128, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
64 61 0.48
65 59 0.46
66 7 0.05
67 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.32
Consensus pattern (64 bp):
GTGTACATTTGAAAAGGAAAGGTATACTTTGTGTGTACACTAGAAAAGGAAACGTACACCTCGA
Found at i:10846237 original size:4 final size:4
Alignment explanation
Indices: 10846228--10846253 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
10846218 ACCTTTTAGT
10846228 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
10846254 GTACTTCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:10846333 original size:5 final size:6
Alignment explanation
Indices: 10846316--10846340 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
10846306 AAAAAACATC
10846316 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
10846341 TGAATTACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:10846709 original size:16 final size:18
Alignment explanation
Indices: 10846678--10846715 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
10846668 TCAATTTCTA
10846678 AAAATAAAATCTTAAATC
1 AAAATAAAATCTTAAATC
*
10846696 AAAAT-AAA-CTTAAATT
1 AAAATAAAATCTTAAATC
10846712 AAAA
1 AAAA
10846716 ATTTATACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 11 0.58
17 3 0.16
18 5 0.26
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (18 bp):
AAAATAAAATCTTAAATC
Found at i:10847566 original size:38 final size:38
Alignment explanation
Indices: 10847524--10847598 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
10847514 ACAATGGTGA
*
10847524 TGCTATAGATTAAAGTCGATTTTTGTCCAAGACTTTAG
1 TGCTATAGATTAAAGCCGATTTTTGTCCAAGACTTTAG
*
10847562 TGCTATAGATTAAAGCCGGTTTTTGTCCAAGACTTTA
1 TGCTATAGATTAAAGCCGATTTTTGTCCAAGACTTTA
10847599 TAAAAGACTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.39
Consensus pattern (38 bp):
TGCTATAGATTAAAGCCGATTTTTGTCCAAGACTTTAG
Found at i:10852384 original size:21 final size:21
Alignment explanation
Indices: 10852355--10852413 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
10852345 TAATCCCCAC
10852355 TAATATATTTTTATTAACCTAAT
1 TAAT-TATTTTTATTAA-CTAAT
* * *
10852378 T-ATTATTATAATTAATTAAT
1 TAATTATTTTTATTAACTAAT
*
10852398 TAATTAATTTTATTAA
1 TAATTATTTTTATTAA
10852414 TTTCTAATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
20 5 0.17
21 21 0.72
22 2 0.07
23 1 0.03
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.54
Consensus pattern (21 bp):
TAATTATTTTTATTAACTAAT
Found at i:10855876 original size:570 final size:575
Alignment explanation
Indices: 10854387--10856695 Score: 3434
Period size: 580 Copynumber: 4.0 Consensus size: 575
10854377 GACCGTGTGT
* * * * *
10854387 ATATTCAAAGTTGGGTCAGACGACAGTGTCACAGGCCGTGTGCTAGACCATGTAACAATCTATTT
1 ATATTCAAAGTTGGGTCATACGACAGTGTCGCAGGCCGTGTGCTAAACCGTGTAACAATCTGTTT
* * *
10854452 TGGCTTACACAGTCATGTCGCAAGCCATGTACTAGGCCATGTGGATACT-TACCTATAATCAATA
66 TGGC-T-CACAGTCATGTCGCAAGCCATGTGCTAGGCCGTGTGGATACTGCACCTATAATCAATA
* *
10854516 ATTACACACGGCCATGCGTAGTGACTGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCCCT
129 ATTACACACGGCCGTGCGTAGTGACCGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCCCT
* * *
10854581 AAATCAAACAATGTCATGCATTATTCCTTGCACAACAAGACATGCCATATCTAGATCAATTCTTA
194 AAATCAAGCAATGCCATGCATTATTCCTTGCACAACAAGACATGCCATATCTAGATCAATTCCTA
*
10854646 GGTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACTCCTAACCAA
259 GGTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACCAA
* *
10854711 TATGCCATTCAAATGCACCATAATTAAAGATCATTCAATCACTAATTTAGCTAAGTAAGCACATG
324 TATGCCATTCAAATGCACCAAAATTAAAGATCATTCAATTACTAATTTAGCTAAGTAAGCACATG
*
10854776 ACATTAAACATCTATTCATGCTCAACCATCAACCAAAATAACCAAAGTACAAACATATTCAAAAC
389 ACATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTACAAACATATTCAAAAC
* *
10854841 TTACCATTTTAAAGTATTACCACTTAGTTCTTGACCATTAAGAATCAATCCAACCAAAAACACTT
454 TTACCATTTCAAAGTATTACCACTTAGCTCTTGACCATTAAGAATCAATCCAACCAAAAACACTT
* *
10854906 TAAACACATATTCAAAATCAAACATTTTACTAAGAACACCATTATAGTATAACATTTAC
519 TAAACACATATTC-AAA-CAAACATTTCACTAGGAACACCATTATAGTATAACATTTAC
** * * * *
10854965 ATATTTGAAGTTGGGTCATATGATAGTGTTGCAGGCTGTGTGCTAAACCGTGTAACAATCTGTTT
1 ATATTCAAAGTTGGGTCATACGACAGTGTCGCAGGCCGTGTGCTAAACCGTGTAACAATCTGTTT
* * * * * * * *
10855030 TGGCTCATACGGTCGTGTTGCAGGCCATGTGCTAGGCTGTATGGGTACTGCACCTGTAATCAATA
66 TGGCTC--ACAGTCATGTCGCAAGCCATGTGCTAGGCCGTGTGGATACTGCACCTATAATCAATA
* * * * *
10855095 ATTACACACGGCCGTGCGTAGTGACAAGTTTGTGGCACATAGCCTTGTGTACCCTGTTTGACCCC
129 ATTACACACGGCCGTGCGTAGTGAC-CGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCCC
* * * *
10855160 TAAATCAAGTAATGTCATGCATTATTCCTTGCACAATAAGACATACCATATCTAGATCAATTCCT
193 TAAATCAAGCAATGCCATGCATTATTCCTTGCACAACAAGACATGCCATATCTAGATCAATTCCT
* * *
10855225 AGGTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCATGCTTAACGA
258 AGGTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACCA
** * * * * *
10855290 ATATGCCATTCAAATGCATTAAAATTAAAGATCATCCAATTACAAATCTAACTAAGGAAGCACAT
323 ATATGCCATTCAAATGCACCAAAATTAAAGATCATTCAATTACTAATTTAGCTAAGTAAGCACAT
*
10855355 GACATTAAACATATATTCATGCTCAACCATCAACCAAATTAACCAAAGTACAAACATATTCAAAA
388 GACATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTACAAACATATTCAAAA
* * *
10855420 CTCACCATTTCAAAGTATTACTACTTAGCTCTTGACCATTAAGAATCAATTCAACCAAAAACACT
453 CTTACCATTTCAAAGTATTACCACTTAGCTCTTGACCATTAAGAATCAATCCAACCAAAAACACT
* * *
10855485 TTAAACACATATTC-AA-AAGC-TTTCACTAGGAACACTATTATAGTATAAAATTTAC
518 TTAAACACATATTCAAACAAACATTTCACTAGGAACACCATTATAGTATAACATTTAC
* * * * ** *
10855540 ATATTCAAAGTTAGGTCACACGACAATGTCGTAGGCTATGTGTTAAACCGTGTAACAATCTGTTT
1 ATATTCAAAGTTGGGTCATACGACAGTGTCGCAGGCCGTGTGCTAAACCGTGTAACAATCTGTTT
* * * *
10855605 TGGCTCACA-T-A-GTCGTAAGCCATGTGTTAGGCTGTGTGGATACTGCACCTATAATAAATAAT
66 TGGCTCACAGTCATGTCGCAAGCCATGTGCTAGGCCGTGTGGATACTGCACCTATAATCAATAA-
* *
10855667 TTACAAACGGCCGTGCGTGGTGACCGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCCCTA
130 TTACACACGGCCGTGCGTAGTGACCGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCCCTA
* * *
10855732 AATTAAGCAATGCCATGCATTATTCCTTGTACAACAAGACATGCCATATCTAGATCAATTTCTAG
195 AATCAAGCAATGCCATGCATTATTCCTTGCACAACAAGACATGCCATATCTAGATCAATTCCTAG
*
10855797 GTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACTAAT
260 GTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACCAAT
* * *
10855862 ATGTCATTCAAATGCACCAGAATTAAAGATCATTCAATTACTAATTTAGCTAAGTAAGCATATGA
325 ATGCCATTCAAATGCACCAAAATTAAAGATCATTCAATTACTAATTTAGCTAAGTAAGCACATGA
10855927 CATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTAC---CATATTCAAAACT
390 CATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTACAAACATATTCAAAACT
*
10855989 TACCATTTCAAAGTATTA-CAGCTTAGCTCTTAACCATTAAGAATCAATCCAACCAAAAACACTT
455 TACCATTTCAAAGTATTACCA-CTTAGCTCTTGACCATTAAGAATCAATCCAACCAAAAACACTT
* *
10856053 TAAACATATATTCAAAACTAGACATTTCACTAGGAACACCATTATAGTATAACATTTAC
519 TAAACACATATTC-AAAC-AAACATTTCACTAGGAACACCATTATAGTATAACATTTAC
** * *
10856112 ATATTTGAAGCTGGGTCATACGACAGTGTCGCAGGCCGTGTGCTAGACCGTGTAACAATCTGTTT
1 ATATTCAAAGTTGGGTCATACGACAGTGTCGCAGGCCGTGTGCTAAACCGTGTAACAATCTGTTT
* * *
10856177 TGGCTCACACGGTCATGTCGCAGGCTATGTGCTAGGCCGTGTGGATACTGCACCAATAATCAATA
66 TGGCTCACA--GTCATGTCGCAAGCCATGTGCTAGGCCGTGTGGATACTGCACCTATAATCAATA
* * * * * *
10856242 ATTACACACGACCGTGCGTGGTGATCGTGTGTGGCACATGGTCGTGTGCACCTTTTTTGACCCCT
129 ATTACACACGGCCGTGCGTAGTGACCGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCCCT
*
10856307 AAATCAAGCAATGCCATGCATTATTCCTTACACAACAAGACATGCCATATCTAGATCAATTCCTA
194 AAATCAAGCAATGCCATGCATTATTCCTTGCACAACAAGACATGCCATATCTAGATCAATTCCTA
*
10856372 TGTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACCAA
259 GGTTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACCAA
* * *
10856437 TATGCCATTCAAATGCACCACAATTAAAGATTATTCAATTGCTAATTTAGCTAAGTAAGCACATG
324 TATGCCATTCAAATGCACCAAAATTAAAGATCATTCAATTACTAATTTAGCTAAGTAAGCACATG
* *
10856502 ACATTAAACATCTATTCACGCTCAACCATCAACCAAATTAACTAAAGTACAAACATATTCAAAAC
389 ACATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTACAAACATATTCAAAAC
* * *
10856567 TTAACATTTCAAAGTATTACCATTTAGCTCTTGACCAGTAAGAATCAATCCAACCAAAAACACTT
454 TTACCATTTCAAAGTATTACCACTTAGCTCTTGACCATTAAGAATCAATCCAACCAAAAACACTT
*
10856632 TAAACACATATTCAAAACCAAACATTTCATTAGGAACACCATTATAGTATAACATTTAC
519 TAAACACATATTC-AAA-CAAACATTTCACTAGGAACACCATTATAGTATAACATTTAC
10856691 ATATT
1 ATATT
10856696 TACAACAAAA
Statistics
Matches: 1550, Mismatches: 160, Indels: 41
0.89 0.09 0.02
Matches are distributed among these distances:
566 1 0.00
567 83 0.05
569 2 0.00
570 301 0.19
571 24 0.02
572 97 0.06
573 2 0.00
575 92 0.06
576 295 0.19
577 44 0.03
578 92 0.06
579 166 0.11
580 351 0.23
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.29
Consensus pattern (575 bp):
ATATTCAAAGTTGGGTCATACGACAGTGTCGCAGGCCGTGTGCTAAACCGTGTAACAATCTGTTT
TGGCTCACAGTCATGTCGCAAGCCATGTGCTAGGCCGTGTGGATACTGCACCTATAATCAATAAT
TACACACGGCCGTGCGTAGTGACCGTGTGTGGCACATGGCCGTGTGTACCCTTTTTGACCCCTAA
ATCAAGCAATGCCATGCATTATTCCTTGCACAACAAGACATGCCATATCTAGATCAATTCCTAGG
TTCAAAAACACATTTAAATCATCAAATACATGCTAAAATTTCATTCATTTCACGCCTAACCAATA
TGCCATTCAAATGCACCAAAATTAAAGATCATTCAATTACTAATTTAGCTAAGTAAGCACATGAC
ATTAAACATCTATTCATGCTCAACCATCAACCAAATTAACCAAAGTACAAACATATTCAAAACTT
ACCATTTCAAAGTATTACCACTTAGCTCTTGACCATTAAGAATCAATCCAACCAAAAACACTTTA
AACACATATTCAAACAAACATTTCACTAGGAACACCATTATAGTATAACATTTAC
Found at i:10865713 original size:81 final size:81
Alignment explanation
Indices: 10865578--10865741 Score: 328
Period size: 81 Copynumber: 2.0 Consensus size: 81
10865568 ATAATAACAG
10865578 AACATCTTCTCGACCGAACTACAAATCTCCTCATCACATCACAAATCCAATGGCATGCCATTTGT
1 AACATCTTCTCGACCGAACTACAAATCTCCTCATCACATCACAAATCCAATGGCATGCCATTTGT
10865643 ATCAAATTTAGTCCGA
66 ATCAAATTTAGTCCGA
10865659 AACATCTTCTCGACCGAACTACAAATCTCCTCATCACATCACAAATCCAATGGCATGCCATTTGT
1 AACATCTTCTCGACCGAACTACAAATCTCCTCATCACATCACAAATCCAATGGCATGCCATTTGT
10865724 ATCAAATTTAGTCCGA
66 ATCAAATTTAGTCCGA
10865740 AA
1 AA
10865742 GTTAATAGGG
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 83 1.00
ACGTcount: A:0.34, C:0.29, G:0.10, T:0.27
Consensus pattern (81 bp):
AACATCTTCTCGACCGAACTACAAATCTCCTCATCACATCACAAATCCAATGGCATGCCATTTGT
ATCAAATTTAGTCCGA
Found at i:10889575 original size:42 final size:42
Alignment explanation
Indices: 10889512--10889675 Score: 186
Period size: 42 Copynumber: 3.7 Consensus size: 42
10889502 CTTCGTTTTC
**
10889512 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATCTTCACAT-A
* * *
10889555 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATCTTCACATA
*
10889596 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAACTATGGTCTTACAC---AT--C-T-TCACATA
*
10889645 TCGATGCCATAACCCAACTATGGTCTTACAC
1 TCGATGCCATAGCCCAACTATGGTCTTACAC
10889676 GAATCACATA
Statistics
Matches: 104, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
41 2 0.02
42 63 0.61
43 1 0.01
45 2 0.02
48 1 0.01
49 35 0.34
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.29
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATCTTCACATA
Found at i:10889655 original size:49 final size:49
Alignment explanation
Indices: 10889582--10889768 Score: 206
Period size: 49 Copynumber: 3.8 Consensus size: 49
10889572 TATGGTCTTA
* * *
10889582 CACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATATCCCAGATATGGTCTTACACGTAAT
*
10889632 CACATATCACATATCGATGCCATAACCCA-ACTATGGTCTTACACG-AAT
1 CACATATCACATATCGATGCCATATCCCAGA-TATGGTCTTACACGTAAT
* * *
10889680 CACATAT-TCATATACTGATGCCATATCCCAGATATGGTCTTATACAGT-AG
1 CACATATCACATAT-C-GATGCCATATCCCAGATATGGTCTTACAC-GTAAT
* *
10889730 CATATATCAC--ACCGATGCCATATCCCAGATATGGTCTTA
1 CACATATCACATATCGATGCCATATCCCAGATATGGTCTTA
10889769 TACGGAAATC
Statistics
Matches: 120, Mismatches: 10, Indels: 17
0.82 0.07 0.12
Matches are distributed among these distances:
47 31 0.26
48 12 0.10
49 61 0.51
50 15 0.12
51 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (49 bp):
CACATATCACATATCGATGCCATATCCCAGATATGGTCTTACACGTAAT
Found at i:10889779 original size:98 final size:97
Alignment explanation
Indices: 10889582--10889768 Score: 247
Period size: 98 Copynumber: 1.9 Consensus size: 97
10889572 TATGGTCTTA
* * *
10889582 CACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATATC
1 CACATATTCATATATCGATGCCATAGCCCAGATATGGTCTTACACGTAAGCACATATCACA-ACC
10889647 GATGCCATAACCCAACTATGGTCTTACACGAAT
65 GATGCCATAACCCAACTATGGTCTTACACGAAT
* * *
10889680 CACATATTCATATA-CTGATGCCATATCCCAGATATGGTCTTATACAGT-AGCATATATCAC-AC
1 CACATATTCATATATC-GATGCCATAGCCCAGATATGGTCTTACAC-GTAAGCACATATCACAAC
*
10889742 CGATGCCATATCCCAGA-TATGGTCTTA
64 CGATGCCATAACCCA-ACTATGGTCTTA
10889769 TACGGAAATC
Statistics
Matches: 79, Mismatches: 7, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
96 25 0.32
97 2 0.03
98 50 0.63
99 2 0.03
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (97 bp):
CACATATTCATATATCGATGCCATAGCCCAGATATGGTCTTACACGTAAGCACATATCACAACCG
ATGCCATAACCCAACTATGGTCTTACACGAAT
Found at i:10889833 original size:31 final size:31
Alignment explanation
Indices: 10889790--10889907 Score: 191
Period size: 31 Copynumber: 3.8 Consensus size: 31
10889780 TTTGTCACTT
*
10889790 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
10889821 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
10889852 GCAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
10889883 GTAGCAGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
10889908 TGTCATTTGT
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 81 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Done.