Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 402 of 433
Found at i:124726288 original size:42 final size:42
Alignment explanation
Indices: 124726241--124726324 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
124726231 TTCAATAATG
124726241 CAAGAGTTATTCTTAAAAACAAGTAAATAACCCTTCTCAATA
1 CAAGAGTTATTCTTAAAAACAAGTAAATAACCCTTCTCAATA
124726283 CAAGAGTTATTCTTAAAAACAAGTAAATAACCCTTCTCAATA
1 CAAGAGTTATTCTTAAAAACAAGTAAATAACCCTTCTCAATA
124726325 AGCTGGCCAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.45, C:0.19, G:0.07, T:0.29
Consensus pattern (42 bp):
CAAGAGTTATTCTTAAAAACAAGTAAATAACCCTTCTCAATA
Found at i:124729442 original size:19 final size:19
Alignment explanation
Indices: 124729415--124729460 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
124729405 TTGCTTTGTT
*
124729415 TAAGATTTGTTTGAGTTTG
1 TAAGATTTGTTTGAGTGTG
*
124729434 TATGATTTGTTTGAGTGTG
1 TAAGATTTGTTTGAGTGTG
124729453 TAAGATTT
1 TAAGATTT
124729461 AATTTTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.22, C:0.00, G:0.26, T:0.52
Consensus pattern (19 bp):
TAAGATTTGTTTGAGTGTG
Found at i:124735049 original size:3 final size:3
Alignment explanation
Indices: 124735043--124735068 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
124735033 AATAATAATA
124735043 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
124735069 AGAAGTTGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:124745746 original size:7 final size:7
Alignment explanation
Indices: 124745734--124745761 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
124745724 TTGAGTGCAA
124745734 AAATGTG
1 AAATGTG
124745741 AAATGTG
1 AAATGTG
124745748 AAATGTG
1 AAATGTG
124745755 AAATGTG
1 AAATGTG
124745762 GTTAAAAGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29
Consensus pattern (7 bp):
AAATGTG
Found at i:124746304 original size:75 final size:74
Alignment explanation
Indices: 124746214--124746380 Score: 219
Period size: 75 Copynumber: 2.2 Consensus size: 74
124746204 CGATTCGTTC
** * * *
124746214 GACTAGTGCTGGGCACATTACTATAATTGTCGGTTTATCCAATTAGTGATGGGCAT-AACTTCTG
1 GACTAGTGCTGGGCACATTACTATAATTGTCAATTCATCCAACTAGTGAT-AG-ATCAACTTCTG
124746278 TCAATTTATCT
64 TCAATTTATCT
* *
124746289 GACTAGTGCTAGGCACATTACTATAATTGTCAATTCATCCAACTAGTGCTAGATGCAACTTCTGT
1 GACTAGTGCTGGGCACATTACTATAATTGTCAATTCATCCAACTAGTGATAGAT-CAACTTCTGT
* *
124746354 CAGTTTATTT
65 CAATTTATCT
124746364 GACTAGTGCTGGGCACA
1 GACTAGTGCTGGGCACA
124746381 GTCTCTATAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
73 2 0.03
74 1 0.01
75 77 0.96
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (74 bp):
GACTAGTGCTGGGCACATTACTATAATTGTCAATTCATCCAACTAGTGATAGATCAACTTCTGTC
AATTTATCT
Found at i:124749833 original size:5 final size:5
Alignment explanation
Indices: 124749823--124749848 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
124749813 GTGAGTGAGC
124749823 AGAAG AGAAG AGAAG AGAAG AGAAG A
1 AGAAG AGAAG AGAAG AGAAG AGAAG A
124749849 ATAATGGAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (5 bp):
AGAAG
Found at i:124757802 original size:17 final size:18
Alignment explanation
Indices: 124757775--124757810 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
124757765 GTTAAAGATC
124757775 AATTGAATTAAATTAAAA
1 AATTGAATTAAATTAAAA
124757793 AATT-AATTAAATTAAAA
1 AATTGAATTAAATTAAAA
124757810 A
1 A
124757811 TTAGTAATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (18 bp):
AATTGAATTAAATTAAAA
Found at i:124758256 original size:12 final size:12
Alignment explanation
Indices: 124758225--124758266 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
124758215 AGTAAAAAAA
124758225 TAAATTTAATTT
1 TAAATTTAATTT
**
124758237 TATGTTTAATTT
1 TAAATTTAATTT
*
124758249 TAAATTTAAGTT
1 TAAATTTAATTT
124758261 TAAATT
1 TAAATT
124758267 CGATTCCATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (12 bp):
TAAATTTAATTT
Found at i:124758256 original size:18 final size:18
Alignment explanation
Indices: 124758229--124758263 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
124758219 AAAAAATAAA
* *
124758229 TTTAATTTTATGTTTAAT
1 TTTAAATTTAAGTTTAAT
124758247 TTTAAATTTAAGTTTAA
1 TTTAAATTTAAGTTTAA
124758264 ATTCGATTCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (18 bp):
TTTAAATTTAAGTTTAAT
Found at i:124770749 original size:17 final size:18
Alignment explanation
Indices: 124770727--124770796 Score: 56
Period size: 17 Copynumber: 3.9 Consensus size: 18
124770717 ATGGAAATAT
124770727 AATCTTCA-ATGATATGC
1 AATCTTCATATGATATGC
* *
124770744 AATCTTTGATGTGATATGC
1 AATC-TTCATATGATATGC
*
124770763 AATCTTAGATATGATAT--
1 AATCTT-CATATGATATGC
*
124770780 AATCTTAGATATGATAT
1 AATCTT-CATATGATAT
124770797 ATAATCTTAG
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
17 21 0.45
18 5 0.11
19 21 0.45
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (18 bp):
AATCTTCATATGATATGC
Found at i:124770760 original size:19 final size:19
Alignment explanation
Indices: 124770735--124770807 Score: 96
Period size: 19 Copynumber: 3.9 Consensus size: 19
124770725 ATAATCTTCA
*
124770735 ATGATATGCAATCTTTGAT
1 ATGATATGCAATCTTAGAT
*
124770754 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
124770773 ATGATAT--AATCTTAGAT
1 ATGATATGCAATCTTAGAT
**
124770790 ATGATATATAATCTTAGA
1 ATGATATGCAATCTTAGA
124770808 AGATATGATT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
17 17 0.35
19 32 0.65
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.40
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:124770784 original size:36 final size:37
Alignment explanation
Indices: 124770735--124770807 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 37
124770725 ATAATCTTCA
* * *
124770735 ATGATATGCAATCTTTGATGTGATATGCAATCTTAGAT
1 ATGATAT-CAATCTTAGATATGATATACAATCTTAGAT
*
124770773 ATGATAT-AATCTTAGATATGATATATAATCTTAGA
1 ATGATATCAATCTTAGATATGATATACAATCTTAGA
124770808 AGATATGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 24 0.77
38 7 0.23
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.40
Consensus pattern (37 bp):
ATGATATCAATCTTAGATATGATATACAATCTTAGAT
Found at i:124770797 original size:17 final size:17
Alignment explanation
Indices: 124770723--124770807 Score: 75
Period size: 19 Copynumber: 4.8 Consensus size: 17
124770713 TCATATGGAA
*
124770723 ATATAATCTT-CA-ATG
1 ATATAATCTTAGATATG
* *
124770738 ATATGCAATCTTTGATGTG
1 ATAT--AATCTTAGATATG
124770757 ATATGCAATCTTAGATATG
1 ATAT--AATCTTAGATATG
124770776 ATATAATCTTAGATATG
1 ATATAATCTTAGATATG
124770793 ATATATAATCTTAGA
1 --ATATAATCTTAGA
124770808 AGATATGATT
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
15 4 0.07
17 19 0.32
18 1 0.02
19 36 0.60
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (17 bp):
ATATAATCTTAGATATG
Found at i:124770812 original size:17 final size:17
Alignment explanation
Indices: 124770763--124770813 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
124770753 TGTGATATGC
*
124770763 AATCTTAG-ATATGATAT
1 AATCTTAGAAGAT-ATAT
124770780 AATCTTAGATATGATATAT
1 AATCTTAGA-A-GATATAT
124770799 AATCTTAGAAGATAT
1 AATCTTAGAAGATAT
124770814 GATTTTGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
17 13 0.43
18 1 0.03
19 14 0.47
20 2 0.07
ACGTcount: A:0.43, C:0.06, G:0.12, T:0.39
Consensus pattern (17 bp):
AATCTTAGAAGATATAT
Found at i:124773999 original size:12 final size:12
Alignment explanation
Indices: 124773982--124774006 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
124773972 TAAAGTTATT
124773982 AAAAAGAGAAAG
1 AAAAAGAGAAAG
124773994 AAAAAGAGAAAG
1 AAAAAGAGAAAG
124774006 A
1 A
124774007 GAGAAGAGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAAAGAGAAAG
Found at i:124776585 original size:14 final size:13
Alignment explanation
Indices: 124776544--124776588 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
124776534 CTTCTATTTC
*
124776544 AAAAAAAAAAAGGG
1 AAAAAAAAAAA-AG
*
124776558 AAAAAAAGAAAAG
1 AAAAAAAAAAAAG
124776571 AAAAAAGAAAAAAG
1 AAAAAA-AAAAAAG
124776585 AAAA
1 AAAA
124776589 TGGAAAGGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 7 0.26
14 20 0.74
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAG
Found at i:124777716 original size:132 final size:132
Alignment explanation
Indices: 124777479--124777885 Score: 717
Period size: 132 Copynumber: 3.1 Consensus size: 132
124777469 CAGAGAAATA
* * * *
124777479 AGATTTGCCATCCTTGCATTTATAGGAAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTATTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
*
124777544 ATAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
124777609 GC
131 GC
*
124777611 AGATTTGGCATCCCTGTATTTATAGGGAACAGATCGAAGATAGCAGATCTAACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTATTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
124777676 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
124777741 GC
131 GC
* *
124777743 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGACGATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTATTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
*
124777808 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAATAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
124777873 G-
131 GC
124777874 ATGATTTGGCAT
1 A-GATTTGGCAT
124777886 TTTTGTGCTT
Statistics
Matches: 264, Mismatches: 10, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
131 1 0.00
132 263 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTATTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:124777884 original size:44 final size:44
Alignment explanation
Indices: 124777479--124777885 Score: 318
Period size: 44 Copynumber: 9.2 Consensus size: 44
124777469 CAGAGAAATA
* * ** *
124777479 AGATTTGCCATCCTTGCATTTATAGGAAACAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * **
124777523 AGATCTGACA-CTCCTGTGCTTATAGCGAAGCAGATCGAAGATTTC
1 AGATTTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
*
124777568 AGCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
*
124777611 AGATTTGGCATCCCTGTATTTATAGGGAACAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* ** * * * **
124777655 AGATCTAACA-CTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTC
1 AGATTTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
*
124777700 AGCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
*
124777743 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGACGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * **
124777787 AGATCTGACA-CTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTC
1 AGATTTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* *
124777832 AGCA--TGGCATCCCTGTGTTTATAGGGAATA-AGTTGAAGATAG-
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
124777874 ATGATTTGGCAT
1 A-GATTTGGCAT
124777886 TTTTGTGCTT
Statistics
Matches: 286, Mismatches: 53, Indels: 48
0.74 0.14 0.12
Matches are distributed among these distances:
42 7 0.02
43 36 0.13
44 191 0.67
45 49 0.17
46 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:124777929 original size:46 final size:47
Alignment explanation
Indices: 124777870--124777961 Score: 116
Period size: 46 Copynumber: 2.0 Consensus size: 47
124777860 TAAGTTGAAG
*
124777870 ATAGATGATTTGGCATTTT-TGTGCTTACAAGGAA-CAAATCGAAGAC
1 ATAGATGATTTGGC-TTTTACGTGCTTACAAGGAAGCAAATCGAAGAC
* * * *
124777916 ATAGCTGATTTGGCTTTTACGTGCTTACGATGAAGCAAATCTAAGA
1 ATAGATGATTTGGCTTTTACGTGCTTACAAGGAAGCAAATCGAAGA
124777962 TGATTTAGCA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
45 4 0.10
46 25 0.64
47 10 0.26
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.32
Consensus pattern (47 bp):
ATAGATGATTTGGCTTTTACGTGCTTACAAGGAAGCAAATCGAAGAC
Found at i:124778222 original size:159 final size:159
Alignment explanation
Indices: 124777933--124778251 Score: 550
Period size: 159 Copynumber: 2.0 Consensus size: 159
124777923 ATTTGGCTTT
* * *
124777933 TACGTGCTTACGATGAAGCAAATCTAAGATGATTTAGCATTTTTGTATTGTCAGAGAACAAATTG
1 TACGTGCTTACGATGAAGCAAATCTAAGATGATTTAGCATCTCTGTATTGTCAGAGAACAAATCG
* *
124777998 AAGTTTGGCGTCTCCATATTCGACGGAGAGCAGGCACATAGCAGATCTGGCCTTCAGATGTTTAT
66 AAGTTTGGCGTCTCCATATTCGACGAAGAGCAGACACATAGCAGATCTGGCCTTCAGATGTTTAT
124778063 ACTGAAGCAAGATCCAAGAT-GATTTGGCA
131 ACTGAAGCAAGATCCAAGATAG-TTTGGCA
*
124778092 TACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCG
1 TACGTGCTTACGATGAAGCAAATCTAAGATGATTTAGCATCTCTGTATTGTCAGAGAACAAATCG
* *
124778157 AAGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACATAGTAGATCTGGCCTTCAGATGTTTAT
66 AAGTTTGGCGTCTCCATATTCGACGAAGAGCAGACACATAGCAGATCTGGCCTTCAGATGTTTAT
124778222 ACTGAAGCAAGATCCAAGATAGTTTGGCA
131 ACTGAAGCAAGATCCAAGATAGTTTGGCA
124778251 T
1 T
124778252 CCTTGTGCTT
Statistics
Matches: 151, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
159 150 0.99
160 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (159 bp):
TACGTGCTTACGATGAAGCAAATCTAAGATGATTTAGCATCTCTGTATTGTCAGAGAACAAATCG
AAGTTTGGCGTCTCCATATTCGACGAAGAGCAGACACATAGCAGATCTGGCCTTCAGATGTTTAT
ACTGAAGCAAGATCCAAGATAGTTTGGCA
Found at i:124778448 original size:207 final size:207
Alignment explanation
Indices: 124778093--124778779 Score: 1115
Period size: 207 Copynumber: 3.3 Consensus size: 207
124778083 GATTTGGCAT
124778093 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
1 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
* *
124778158 AGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACATAGTAGATCTGGCCTTCAGATGTTTATA
66 AGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATA
*
124778223 CTGAAGCAAGATCCAAGATAGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
131 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
124778288 GATTTGGCTTTC
196 GATTTGGCTTTC
* *
124778300 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAGAGAACAAATCAA
1 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
* *
124778365 AGTTTGGCGTCTCTATATTCGACGGAGGGCAGACACATTGCAGATCTGGCCTTCAGATGTTTATA
66 AGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATA
124778430 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
131 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
124778495 GATTTGGCTTTC
196 GATTTGGCTTTC
* * * *
124778507 ACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGA
1 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
* * * ** * *
124778572 AGTTTGGCGTCTCCATATTCGACAGATGGCAGACATATAGCAGATCTAACCTTCAGATGATTAGA
66 AGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATA
* * *
124778637 CTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCAAAGACATAGCT
131 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
124778701 GATTTGGCTTTC
196 GATTTGGCTTTC
* * * * * * *
124778713 GCGTGTTTACGCTGAAACAAATCTAAGATGATTTGGTATCTCTGTATTGTCAGGGAACAAATTGA
1 ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
124778778 AG
66 AG
124778780 AAGCAGATTT
Statistics
Matches: 447, Mismatches: 33, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
206 125 0.28
207 322 0.72
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (207 bp):
ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
AGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATA
CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
GATTTGGCTTTC
Found at i:124779200 original size:19 final size:19
Alignment explanation
Indices: 124779175--124779265 Score: 134
Period size: 19 Copynumber: 4.9 Consensus size: 19
124779165 ATAATCTTCA
124779175 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* *
124779194 GTGATATGTAATCTTAGAT
1 ATGATATGCAATCTTAGAT
124779213 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
124779230 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
124779248 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
124779266 AGATATGATT
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
17 15 0.23
18 16 0.25
19 33 0.52
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:124779215 original size:14 final size:16
Alignment explanation
Indices: 124779184--124779253 Score: 68
Period size: 17 Copynumber: 4.0 Consensus size: 16
124779174 AATGATATGC
*
124779184 AATCTTAGATGTGATA
1 AATCTTAGATATGATA
124779200 TGTAATCTTAGATATGATA
1 ---AATCTTAGATATGATA
*
124779219 CAATCTTAGATATGATTGC
1 -AATCTTAGATATGA-T-A
124779238 AATCTTAGATATGATA
1 AATCTTAGATATGATA
124779254 TACAATCTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
17 15 0.33
18 15 0.33
19 15 0.33
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (16 bp):
AATCTTAGATATGATA
Found at i:124779248 original size:35 final size:37
Alignment explanation
Indices: 124779183--124779272 Score: 125
Period size: 35 Copynumber: 2.5 Consensus size: 37
124779173 CAATGATATG
* *
124779183 CAATCTTAGATGTGATATGTAATCTTAGATATG-ATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGAATA
124779219 CAATCTTAGATATGAT-TGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGA-ATA
124779256 CAATCTTAGA-A-GATATG
1 CAATCTTAGATATGATATG
124779273 ATTTTGTAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
35 18 0.37
36 18 0.37
37 13 0.27
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.37
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGAATA
Found at i:124783640 original size:19 final size:17
Alignment explanation
Indices: 124783614--124783664 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 17
124783604 TATTTTAGAA
124783614 AATTTTTAAAATTTTAT
1 AATTTTTAAAATTTTAT
* *
124783631 ATATTCTTTAGAATTTTTT
1 A-ATT-TTTAAAATTTTAT
*
124783650 AATTTTTATAATTTT
1 AATTTTTAAAATTTT
124783665 TTAAAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 11 0.38
18 6 0.21
19 12 0.41
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (17 bp):
AATTTTTAAAATTTTAT
Found at i:124783645 original size:28 final size:27
Alignment explanation
Indices: 124783614--124783667 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
124783604 TATTTTAGAA
124783614 AATTTTTAAAATTTTATATATTCTTTAG
1 AATTTTTAAAATTTTATA-ATTCTTTAG
* * *
124783642 AATTTTTTAATTTTTATAATTTTTTA
1 AATTTTTAAAATTTTATAATTCTTTA
124783668 AAAAATATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (27 bp):
AATTTTTAAAATTTTATAATTCTTTAG
Found at i:124783667 original size:27 final size:27
Alignment explanation
Indices: 124783614--124783702 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
124783604 TATTTTAGAA
* *
124783614 AATTTTTAAAATTTTATATATTCTTTAG
1 AATTTTTAAATTTTTATA-ATTTTTTAG
* *
124783642 AATTTTTTAATTTTTATAATTTTTTAA
1 AATTTTTAAATTTTTATAATTTTTTAG
** * *
124783669 AAAATATAAATTTTTATAAATATTTT-G
1 AATTTTTAAATTTTTAT-AATTTTTTAG
124783696 AATTTTT
1 AATTTTT
124783703 TTGTCAATTT
Statistics
Matches: 47, Mismatches: 13, Indels: 3
0.75 0.21 0.05
Matches are distributed among these distances:
27 24 0.51
28 23 0.49
ACGTcount: A:0.38, C:0.01, G:0.02, T:0.58
Consensus pattern (27 bp):
AATTTTTAAATTTTTATAATTTTTTAG
Found at i:124783838 original size:20 final size:20
Alignment explanation
Indices: 124783797--124783841 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
124783787 CTCGACTTGA
124783797 ATTTAAAACTCGAATAACTCG
1 ATTTAAAACTC-AATAACTCG
*
124783818 ATTTAATAACTC-ATAATTCG
1 ATTTAA-AACTCAATAACTCG
124783838 ATTT
1 ATTT
124783842 TTTTAATCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 11 0.50
21 6 0.27
22 5 0.23
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.38
Consensus pattern (20 bp):
ATTTAAAACTCAATAACTCG
Found at i:124784584 original size:42 final size:42
Alignment explanation
Indices: 124784527--124784625 Score: 137
Period size: 41 Copynumber: 2.4 Consensus size: 42
124784517 GTTTTATCAA
* * *
124784527 AAAACTCCGCAAAAAAAACAGAGCATTAGCGGCATTTTTGGT
1 AAAACGCCGCTAAAAAAACAGAGCATTAGCGGCACTTTTGGT
* *
124784569 AAAACGCCGCT-AAAAAACGGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAAAACAGAGCATTAGCGGCACTTTTGGT
*
124784610 AAAGCGCCGCTAAAAA
1 AAAACGCCGCTAAAAA
124784626 CAGGATCAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
41 37 0.74
42 13 0.26
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.18
Consensus pattern (42 bp):
AAAACGCCGCTAAAAAAACAGAGCATTAGCGGCACTTTTGGT
Found at i:124784594 original size:41 final size:40
Alignment explanation
Indices: 124784539--124784665 Score: 139
Period size: 41 Copynumber: 3.1 Consensus size: 40
124784529 AACTCCGCAA
*
124784539 AAAAAACAGAGCATTAGCGGCATTTTTGGTAAAACGCCGCT
1 AAAAAACGGAGCATTAGCGGC-TTTTTGGTAAAACGCCGCT
* *
124784580 AAAAAACGGAGCATTAGCGGCGCTTTTGGTAAAGCGCCGCT
1 AAAAAACGGAGCATTAGCGGC-TTTTTGGTAAAACGCCGCT
* * * * *
124784621 -AAAAACAGGATCAATAGTGGCTTTGTGGTCAAAACGCCACT
1 AAAAAAC-GGAGCATTAGCGGCTTTTTGGT-AAAACGCCGCT
124784662 AAAA
1 AAAA
124784666 GTCTCACATG
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
40 12 0.17
41 57 0.79
42 3 0.04
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (40 bp):
AAAAAACGGAGCATTAGCGGCTTTTTGGTAAAACGCCGCT
Found at i:124784777 original size:37 final size:37
Alignment explanation
Indices: 124784705--124784778 Score: 103
Period size: 37 Copynumber: 2.0 Consensus size: 37
124784695 CTCAAAAAAT
* * *
124784705 CATAAACACTAATCTATAACCCCTAAAATAGTAAACC
1 CATAAACACTAAACTATAACCCCTAAAACACTAAACC
* *
124784742 CATAAACACTAAACTATTACCCCTAAAACCCTAAACC
1 CATAAACACTAAACTATAACCCCTAAAACACTAAACC
124784779 AGTTTATGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.47, C:0.31, G:0.01, T:0.20
Consensus pattern (37 bp):
CATAAACACTAAACTATAACCCCTAAAACACTAAACC
Found at i:124784876 original size:15 final size:15
Alignment explanation
Indices: 124784840--124784890 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
124784830 TATTTTTGGG
*
124784840 TTTAGGGTTTAAGG-
1 TTTATGGTTTAAGGT
* *
124784854 TCTATGGTTTAGGGT
1 TTTATGGTTTAAGGT
124784869 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
124784884 TTAATGG
1 TTTATGG
124784891 CCATAGGTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 11 0.37
15 19 0.63
ACGTcount: A:0.20, C:0.02, G:0.31, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:124785270 original size:15 final size:14
Alignment explanation
Indices: 124785247--124785328 Score: 51
Period size: 14 Copynumber: 5.6 Consensus size: 14
124785237 GAGTTATGAA
124785247 TTTATGGGTTATGGGG
1 TTTA-GGGTTA-GGGG
*
124785263 TTTAGGGTTTA-GGA
1 TTTAGGG-TTAGGGG
*
124785277 TTTAGGTGTTAGGGAT
1 TTTAGG-GTTAGGG-G
124785293 TTTAGGGTTAGGGG
1 TTTAGGGTTAGGGG
** *
124785307 ACATA-TGTTAGGGG
1 -TTTAGGGTTAGGGG
124785321 TTTAGGGT
1 TTTAGGGT
124785329 AATTAGTGTG
Statistics
Matches: 51, Mismatches: 9, Indels: 14
0.69 0.12 0.19
Matches are distributed among these distances:
13 2 0.04
14 21 0.41
15 15 0.29
16 13 0.25
ACGTcount: A:0.18, C:0.01, G:0.40, T:0.40
Consensus pattern (14 bp):
TTTAGGGTTAGGGG
Found at i:124785456 original size:17 final size:17
Alignment explanation
Indices: 124785430--124785481 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
124785420 AATCTATATA
*
124785430 TTAAATAATTTCAAATT
1 TTAAAAAATTTCAAATT
* *
124785447 TTAAAGAA-TTAAAATT
1 TTAAAAAATTTCAAATT
*
124785463 TTAAAAAATTTCAAGTT
1 TTAAAAAATTTCAAATT
124785480 TT
1 TT
124785482 CAAATTTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
16 14 0.48
17 15 0.52
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (17 bp):
TTAAAAAATTTCAAATT
Found at i:124785463 original size:16 final size:16
Alignment explanation
Indices: 124785442--124785472 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
124785432 AAATAATTTC
*
124785442 AAATTTTAAAGAATTA
1 AAATTTTAAAAAATTA
124785458 AAATTTTAAAAAATT
1 AAATTTTAAAAAATT
124785473 TCAAGTTTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
AAATTTTAAAAAATTA
Found at i:124785636 original size:18 final size:17
Alignment explanation
Indices: 124785599--124785633 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
124785589 TATATAAGTG
124785599 ATTGTTTTTTAATTTAT
1 ATTGTTTTTTAATTTAT
124785616 ATTG-TTTTTAATTTAT
1 ATTGTTTTTTAATTTAT
124785632 AT
1 AT
124785634 ATTAAATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (17 bp):
ATTGTTTTTTAATTTAT
Found at i:124785913 original size:115 final size:115
Alignment explanation
Indices: 124785740--124786021 Score: 440
Period size: 115 Copynumber: 2.4 Consensus size: 115
124785730 GTTTTGCGCA
* *
124785740 AAACGCCGCAATAGGTGTGTTTTTAGCGGCGCTAGGATATAAACGCCGCTAAAGGTGATTTCGGT
1 AAACGCCGCAATAGGTG-GTTTTTAGCGGCGCTAGGATATAAACGCCGCTAAAAGTGATTTCGAT
* * *
124785805 TAAAACAAAAACGGCGTCGTTTTGTTATATTATTAGTGGCATTTTGGGGCT
65 TAAAAAAAAAACGGCGTCGTTTTATTATATTATTAGTGGCATTTTGAGGCT
* * *
124785856 AAACACCGCAATAGGTGCG-TTTTAGCGGCGCTGGGGTATAAACGCCGCTAAAAGTGATTTCGAT
1 AAACGCCGCAATAGGTG-GTTTTTAGCGGCGCTAGGATATAAACGCCGCTAAAAGTGATTTCGAT
*
124785920 TAAAAAAAAAACGGCGTCGTTTTATTATATTATTAGTGGCGTTTTGAGGCT
65 TAAAAAAAAAACGGCGTCGTTTTATTATATTATTAGTGGCATTTTGAGGCT
* *
124785971 AAACGCCGCAATAGGTGGTTTTTAGCAGCGCTAGGTTATAAACGCCGCTAA
1 AAACGCCGCAATAGGTGGTTTTTAGCGGCGCTAGGATATAAACGCCGCTAA
124786022 TGTTAAATTA
Statistics
Matches: 151, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
114 1 0.01
115 133 0.88
116 17 0.11
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (115 bp):
AAACGCCGCAATAGGTGGTTTTTAGCGGCGCTAGGATATAAACGCCGCTAAAAGTGATTTCGATT
AAAAAAAAAACGGCGTCGTTTTATTATATTATTAGTGGCATTTTGAGGCT
Found at i:124787215 original size:13 final size:13
Alignment explanation
Indices: 124787174--124787218 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
124787164 ATCCCGATCA
124787174 AGTTAAACCAGCT
1 AGTTAAACCAGCT
* *
124787187 TGTTATAACTAGCT
1 AGTTA-AACCAGCT
124787201 AGTTAAACCAGCT
1 AGTTAAACCAGCT
124787214 AGTTA
1 AGTTA
124787219 TAACACATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.31
Consensus pattern (13 bp):
AGTTAAACCAGCT
Found at i:124787531 original size:21 final size:20
Alignment explanation
Indices: 124787481--124787529 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
124787471 TTCTTTAAGA
*
124787481 TTTTATTATGGTTGACATTT
1 TTTTATTTTGGTTGACATTT
124787501 TTTTATTTTGGTTGACATTT
1 TTTTATTTTGGTTGACATTT
124787521 TTTTATTTT
1 TTTTATTTT
124787530 TGAGTTTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.16, C:0.04, G:0.12, T:0.67
Consensus pattern (20 bp):
TTTTATTTTGGTTGACATTT
Found at i:124788362 original size:20 final size:20
Alignment explanation
Indices: 124788332--124788378 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
124788322 TGGTTGTGTT
124788332 AATAA-TAATTTAAATATAA
1 AATAAGTAATTTAAATATAA
* *
124788351 AATAAGTAATTTTAATATTA
1 AATAAGTAATTTAAATATAA
*
124788371 AATGAGTA
1 AATAAGTA
124788379 TTGAATATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.38
Consensus pattern (20 bp):
AATAAGTAATTTAAATATAA
Found at i:124791437 original size:241 final size:241
Alignment explanation
Indices: 124791014--124791472 Score: 891
Period size: 241 Copynumber: 1.9 Consensus size: 241
124791004 TCTTGTAGTG
124791014 TATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAAC
1 TATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAAC
124791079 AATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAA
66 AATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAA
124791144 ACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAATGCC
131 ACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAATGCC
124791209 ACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTC
196 ACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTC
124791255 TATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAAC
1 TATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAAC
* * *
124791320 AATAGCTGACCTTCTCTCCAACTTTTTTTTAAATATTTTAGAGATTCCAAGTATATAGGCTGGAA
66 AATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAA
124791385 ACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAATGCC
131 ACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAATGCC
124791450 ACGTATGATGAATCTTAAAAAAT
196 ACGTATGATGAATCTTAAAAAAT
124791473 AACTTACTTA
Statistics
Matches: 215, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
241 215 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (241 bp):
TATCGAGCTCATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAAC
AATAGCTGACCTTCTCTCCAACCTTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAA
ACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAATGCC
ACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTC
Found at i:124791493 original size:9 final size:9
Alignment explanation
Indices: 124791471--124791529 Score: 73
Period size: 9 Copynumber: 6.6 Consensus size: 9
124791461 ATCTTAAAAA
124791471 ATAACTTAC
1 ATAACTTAC
* *
124791480 TTAACTCAC
1 ATAACTTAC
124791489 ATAACTTAC
1 ATAACTTAC
*
124791498 ATAATTTAC
1 ATAACTTAC
*
124791507 ATAACTCAC
1 ATAACTTAC
*
124791516 ATAACGTAC
1 ATAACTTAC
124791525 ATAAC
1 ATAAC
124791530 AACTTACGGA
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.44, C:0.24, G:0.02, T:0.31
Consensus pattern (9 bp):
ATAACTTAC
Found at i:124791511 original size:27 final size:27
Alignment explanation
Indices: 124791471--124791529 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
124791461 ATCTTAAAAA
* *
124791471 ATAACTTACTTAACTCACATAACTTAC
1 ATAACTTACATAACTCACATAACGTAC
*
124791498 ATAATTTACATAACTCACATAACGTAC
1 ATAACTTACATAACTCACATAACGTAC
124791525 ATAAC
1 ATAAC
124791530 AACTTACGGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.24, G:0.02, T:0.31
Consensus pattern (27 bp):
ATAACTTACATAACTCACATAACGTAC
Found at i:124796236 original size:22 final size:22
Alignment explanation
Indices: 124796208--124796272 Score: 78
Period size: 22 Copynumber: 2.9 Consensus size: 22
124796198 ACAAACGAAT
*
124796208 AGAGAGCACTAAAGTGCTATAC
1 AGAGAGCACTAAAGTGCTAAAC
*
124796230 AGAGAGCAC-AGATGTGCTAAAC
1 AGAGAGCACTA-AAGTGCTAAAC
*
124796252 AGAGAGCACTTAACGTGCTAA
1 AGAGAGCAC-TAAAGTGCTAA
124796273 TAATAGAACG
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 1 0.03
22 27 0.73
23 8 0.22
24 1 0.03
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (22 bp):
AGAGAGCACTAAAGTGCTAAAC
Found at i:124797381 original size:22 final size:22
Alignment explanation
Indices: 124797356--124797398 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
124797346 TTCGTCCCTG
* *
124797356 CTATTCTGTTTGTTTATTTTTT
1 CTATTCTGTTTCTTTACTTTTT
124797378 CTATTCTGTTTCTTTACTTTT
1 CTATTCTGTTTCTTTACTTTT
124797399 CTTATGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.14, G:0.07, T:0.70
Consensus pattern (22 bp):
CTATTCTGTTTCTTTACTTTTT
Found at i:124797417 original size:7 final size:7
Alignment explanation
Indices: 124797407--124797495 Score: 55
Period size: 7 Copynumber: 13.3 Consensus size: 7
124797397 TTCTTATGTT
124797407 TTATATA
1 TTATATA
124797414 -T-TATA
1 TTATATA
124797419 TTATATA
1 TTATATA
*
124797426 TAATATA
1 TTATATA
*
124797433 ATA-ATA
1 TTATATA
*
124797439 TAATATA
1 TTATATA
124797446 TTATATA
1 TTATATA
124797453 TTA-ATA
1 TTATATA
*
124797459 CTTAAATA
1 -TTATATA
124797467 TTA-AGT-
1 TTATA-TA
*
124797473 TAATATA
1 TTATATA
*
124797480 ATATATA
1 TTATATA
*
124797487 ATATATA
1 TTATATA
124797494 TT
1 TT
124797496 TTTATATAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 13 0.20
7 44 0.69
8 3 0.05
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (7 bp):
TTATATA
Found at i:124799697 original size:21 final size:21
Alignment explanation
Indices: 124799664--124799714 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
124799654 ACAACTTAGA
*
124799664 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
124799685 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
124799706 GCAGAGGCA
1 GCAGAGGCA
124799715 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:124800016 original size:31 final size:32
Alignment explanation
Indices: 124799954--124800036 Score: 96
Period size: 31 Copynumber: 2.6 Consensus size: 32
124799944 TTAGAATTCA
* *
124799954 TGTTTTTGGTTGTATTTTTTATGCTAGATTTGC
1 TGTTTTTGGTTGCATTTTATAT-CTAGATTTGC
* *
124799987 TGTTTTTGGTTGCATTTTATAT-TATATTTGT
1 TGTTTTTGGTTGCATTTTATATCTAGATTTGC
* *
124800018 TGTATTTGGTTGGATTTTA
1 TGTTTTTGGTTGCATTTTA
124800037 ATGCAGGAAG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
31 24 0.55
33 20 0.45
ACGTcount: A:0.14, C:0.04, G:0.20, T:0.61
Consensus pattern (32 bp):
TGTTTTTGGTTGCATTTTATATCTAGATTTGC
Found at i:124800172 original size:43 final size:43
Alignment explanation
Indices: 124800125--124800358 Score: 344
Period size: 43 Copynumber: 5.5 Consensus size: 43
124800115 CTAAAAGCCA
* *
124800125 TGACTTTTAACGGCGCTTTTCCCACAAAGGCCGCTAAAGGACG
1 TGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGGACG
* *
124800168 TGACTTTTAGCGGCGCTTTTCCCACAAATGCCGCTAAAGGATG
1 TGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGGACG
*
124800211 TGACTTTTAGTGGCGCTTTTCCCACAAACGCCGCTAAAGGACG
1 TGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGGACG
*
124800254 AGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGGACG
1 TGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGGACG
* * * * *
124800297 AGACTTTTAGCGACGC-TTTCCCACAAACGCCGTTAAAAGCCG
1 TGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGGACG
* *
124800339 TGACTTTTAACGGCGTTTTT
1 TGACTTTTAGCGGCGCTTTT
124800359 TTTAATAAAC
Statistics
Matches: 174, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
42 35 0.20
43 139 0.80
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (43 bp):
TGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGGACG
Found at i:124803170 original size:46 final size:46
Alignment explanation
Indices: 124803122--124803303 Score: 240
Period size: 46 Copynumber: 4.0 Consensus size: 46
124803112 GCTCTCTGAT
* * *
124803122 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCTTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGCATGAC
* *
124803168 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGCATGAC
* * *
124803214 ATGAAATGAATAAGACCATGGTTGAAAGATATCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGCATGAC
* * * *
124803260 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGCATG
124803304 TCAAAGATAA
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 121 0.99
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.23
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAGCATGAC
Found at i:124811703 original size:19 final size:20
Alignment explanation
Indices: 124811678--124811721 Score: 58
Period size: 18 Copynumber: 2.3 Consensus size: 20
124811668 GAATTTTGAG
124811678 TTATTTTAT-TAATT-TTAAA
1 TTATTTT-TGTAATTATTAAA
124811697 -TATTTTTGTAATTATTAAA
1 TTATTTTTGTAATTATTAAA
124811716 TTATTT
1 TTATTT
124811722 GTCGAAATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 1 0.05
18 11 0.50
19 5 0.23
20 5 0.23
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
TTATTTTTGTAATTATTAAA
Found at i:124813133 original size:33 final size:34
Alignment explanation
Indices: 124813091--124813159 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 34
124813081 CAGTTGTTTA
124813091 CTTAAAAAAGGTGATTTTGTTA-TTTTTTTTCTT
1 CTTAAAAAAGGTGATTTTGTTATTTTTTTTTCTT
124813124 CTTAAAAAAGGTGATTTTGTTATTTTTTTTTCTT
1 CTTAAAAAAGGTGATTTTGTTATTTTTTTTTCTT
124813158 CT
1 CT
124813160 CTGTTCAACG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 22 0.63
34 13 0.37
ACGTcount: A:0.23, C:0.07, G:0.12, T:0.58
Consensus pattern (34 bp):
CTTAAAAAAGGTGATTTTGTTATTTTTTTTTCTT
Found at i:124814902 original size:35 final size:36
Alignment explanation
Indices: 124814802--124814930 Score: 147
Period size: 35 Copynumber: 3.5 Consensus size: 36
124814792 GGCAAAGTGT
* **
124814802 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATTATCCCATACTGAGTTAA
124814837 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATTATC----CCATACTGAGTTAA
* *
124814877 GAAATGTAGGTATGGCATT-TCCCATACCGAGTTGAA
1 GAAATGTAGGTATGGTATTATCCCATACTGAGTT-AA
124814913 -AAATGTAGGTATGGTATT
1 GAAATGTAGGTATGGTATT
124814931 TCAATGAGGA
Statistics
Matches: 82, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
35 49 0.60
36 2 0.02
39 2 0.02
40 29 0.35
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.33
Consensus pattern (36 bp):
GAAATGTAGGTATGGTATTATCCCATACTGAGTTAA
Found at i:124816508 original size:19 final size:20
Alignment explanation
Indices: 124816486--124816541 Score: 51
Period size: 19 Copynumber: 2.8 Consensus size: 20
124816476 TACTATATGT
124816486 ATTATTTATTTTTATAAAC-
1 ATTATTTATTTTTATAAACA
* * * *
124816505 ATTAGTTATATATAAAAACA
1 ATTATTTATTTTTATAAACA
124816525 ATGTATATTATTTTTAT
1 AT-TAT-TTATTTTTAT
124816542 TTCTATGTTA
Statistics
Matches: 26, Mismatches: 8, Indels: 3
0.70 0.22 0.08
Matches are distributed among these distances:
19 15 0.58
20 2 0.08
21 2 0.08
22 7 0.27
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.52
Consensus pattern (20 bp):
ATTATTTATTTTTATAAACA
Found at i:124816603 original size:21 final size:19
Alignment explanation
Indices: 124816579--124816632 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 19
124816569 CTTATAAATT
124816579 TTTATTATATATACGTTTTAC
1 TTTATTATATATA--TTTTAC
*
124816600 TTTATATATTATTTATTTTAC
1 TTTAT-TA-TATATATTTTAC
*
124816621 TATATTATATAT
1 TTTATTATATAT
124816633 GTAAATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
19 4 0.14
20 2 0.07
21 15 0.54
22 2 0.07
23 5 0.18
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTATTATATATATTTTAC
Found at i:124816626 original size:17 final size:16
Alignment explanation
Indices: 124816595--124816628 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
124816585 ATATATACGT
124816595 TTTACTTTATATATTA
1 TTTACTTTATATATTA
*
124816611 TTTATTTTACTATATTA
1 TTTACTTTA-TATATTA
124816628 T
1 T
124816629 ATATGTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTACTTTATATATTA
Found at i:124816631 original size:24 final size:24
Alignment explanation
Indices: 124816601--124816679 Score: 65
Period size: 26 Copynumber: 3.2 Consensus size: 24
124816591 ACGTTTTACT
124816601 TTATATATTATTTATTTTACTATA
1 TTATATATTATTTATTTTACTATA
* *
124816625 TTATATATGTAAATTATTATA-TATTA
1 TTATATAT-T-ATTTATTTTACTA-TA
124816651 TTATATTATT-TTTATTATTAACTAT-
1 TTATA-TATTATTTATT-TT-ACTATA
124816676 TTAT
1 TTAT
124816680 TATGTATAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 13
0.72 0.07 0.21
Matches are distributed among these distances:
24 13 0.30
25 8 0.18
26 18 0.41
27 5 0.11
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (24 bp):
TTATATATTATTTATTTTACTATA
Found at i:124816682 original size:17 final size:18
Alignment explanation
Indices: 124816641--124816682 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
124816631 ATGTAAATTA
*
124816641 TTATATATTATTATATTAT
1 TTAT-TATTATTATACTAT
124816660 TT-TTATTATTA-ACTAT
1 TTATTATTATTATACTAT
124816676 TTATTAT
1 TTATTAT
124816683 GTATAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 6 0.29
17 12 0.57
18 1 0.05
19 2 0.10
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (18 bp):
TTATTATTATTATACTAT
Found at i:124828494 original size:25 final size:26
Alignment explanation
Indices: 124828437--124828570 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
124828427 CATGAAATTC
*
124828437 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
124828463 TTATCATGAAACATTTACCTAACC-A
1 TTATCATGAAACATTTACCTAACCTA
*
124828488 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
124828514 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
124828540 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
124828565 TTATCA
1 TTATCA
124828571 ATTTGTATCA
Statistics
Matches: 106, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
25 47 0.44
26 59 0.56
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:124828517 original size:51 final size:52
Alignment explanation
Indices: 124828437--124828570 Score: 227
Period size: 51 Copynumber: 2.6 Consensus size: 52
124828427 CATGAAATTC
* *
124828437 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACC-A
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCTA
*
124828488 TTATCATGGAACATTTACCTAACCTATTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCTA
124828540 TTATCAT-GAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
124828571 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
51 71 0.90
52 8 0.10
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCTA
Found at i:124828574 original size:20 final size:22
Alignment explanation
Indices: 124828446--124828571 Score: 101
Period size: 25 Copynumber: 5.1 Consensus size: 22
124828436 CTTATCATGA
*
124828446 AACATTTACCTAACCCATTATC
1 AACATTTACCTAACCTATTATC
124828468 ATGAAACATTTACCTAACC-ATTATC
1 ----AACATTTACCTAACCTATTATC
124828493 ATGGAACATTTACCTAACCTATTATC
1 ----AACATTTACCTAACCTATTATC
124828519 ATGGAACATTTACCTAACCTATTATC
1 ----AACATTTACCTAACCTATTATC
124828545 ATGAACATTTACCTAACCTATTATC
1 ---AACATTTACCTAACCTATTATC
124828570 AA
1 AA
124828572 TTTGTATCAA
Statistics
Matches: 96, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
22 2 0.02
25 47 0.49
26 47 0.49
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (22 bp):
AACATTTACCTAACCTATTATC
Found at i:124834293 original size:26 final size:26
Alignment explanation
Indices: 124834257--124834391 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
124834247 CATGAAATTC
*
124834257 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
124834283 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
124834309 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
124834335 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
124834361 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
124834386 TTATCA
1 TTATCA
124834392 ATTTGTATCA
Statistics
Matches: 107, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
25 23 0.21
26 84 0.79
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:124837638 original size:44 final size:44
Alignment explanation
Indices: 124837583--124838673 Score: 843
Period size: 44 Copynumber: 24.2 Consensus size: 44
124837573 GTAAATCATT
* * * * *
124837583 GATAGCTGATTTGGCGTCTCCGTATTGTCAGAGAGCAAATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
* *
124837627 GATAGCAGATTTAGCGTCTCTGTATTGACAGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
* *
124837671 GAT-GACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
1 GATAG-CAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
* * * *
124837715 GATAACAGATTTGGCATCTCTGTATTGACAGAGAGCAGATTGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
* * *
124837759 GATAACAGATTTGGCGTCTCTGTATTGATGGAGAGCAGTCTCTGTATTGACA
1 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCA------G-ATCGA-A
* * * * ** * *
124837811 GAGAGCAGATTAAGGATAGCAGATTTGGC-GTTTCTGTATTGACG-G-AGAGTAGATC
1 GATAGCAGATT-----TGGC-G-TCT--CTGTAT-TG-ACGGA-GAGCAGA-TCGA-A
* * * * *
124837866 GA-AGATAACAAATTTGGTGTCTCTGTGTTGACAGAGAGCAGATCAAA
1 GATAG----CAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
*
124837913 GATAGCAGATTTGGCGTCTTTGTATTGACGGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
* * * * * *
124837957 GATAACAGATTTGGCATCTCTGTATTAACGGAAAGTAAATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
124838001 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
* *
124838045 GATAGTAGATTTGGTGTCTCTGTATTGACGGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
*
124838089 GATAACAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
* * * *
124838133 GATAACAGATTTGGCATCTCTGTATTGACGGAAAGTAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
124838177 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
* * *
124838221 GATAGTAGATTTGGCATCTCTATATTGACGGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
124838265 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
* ** *
124838309 GATAACAGATTTGGCGTCT-TAGTATTGACAAAGAGCAGATTGAA
1 GATAGCAGATTTGGCGTCTCT-GTATTGACGGAGAGCAGATCGAA
* * * * * * * *
124838353 AATAACAGATTTTGCGTCTCTGTGTTAGATGGGGAGTAGATAGAA
1 GATAGCAGATTTGGCGTCTCTGTATT-GACGGAGAGCAGATCGAA
* * * ** * * *
124838398 GATAGCAGATTTGACAT-T-TGTATGCTTACATCAAAACAGATTGAA
1 GATAGCAGATTTGGCGTCTCTGTAT--TGAC-GGAGAGCAGATCGAA
* * * * *
124838443 GAT-GACAGATTTGGCCTCTCTGTATT-AAGCAAGGAGTAGATCAAA
1 GATAG-CAGATTTGGCGTCTCTGTATTGACG-GA-GAGCAGATCGAA
** * *
124838488 GATTTCAGCA--TGGCAT-TCCTG-AGTTTG-CAGG-GAGCA-AGTTGAA
1 GATAGCAG-ATTTGGCGTCT-CTGTA--TTGAC-GGAGAGCAGA-TCGAA
* * ** * *
124838531 GATAGTAGATTTGGCGTCTCTGTATTAACAAATAACAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
** *
124838575 GATAGCAGATTTGGCGTCT-TAGTATTGACAAAGAGCAGATTGAA
1 GATAGCAGATTTGGCGTCTCT-GTATTGACGGAGAGCAGATCGAA
* ** * * *
124838619 AATAATAGATTTTGCGTCTCTGTGTTAGATAGG-GAGCAGATCGAA
1 GATAGCAGATTTGGCGTCTCTGTATT-GA-CGGAGAGCAGATCGAA
124838664 GATAGCAGAT
1 GATAGCAGAT
124838674 CTGACATTTG
Statistics
Matches: 844, Mismatches: 142, Indels: 121
0.76 0.13 0.11
Matches are distributed among these distances:
42 2 0.00
43 23 0.03
44 650 0.77
45 87 0.10
46 3 0.00
47 8 0.01
48 8 0.01
49 6 0.01
50 4 0.00
51 7 0.01
52 11 0.01
53 2 0.00
54 3 0.00
55 6 0.01
57 3 0.00
58 6 0.01
59 2 0.00
60 3 0.00
61 4 0.00
62 5 0.01
63 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (44 bp):
GATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAA
Found at i:124837802 original size:22 final size:22
Alignment explanation
Indices: 124837774--124837818 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
124837764 CAGATTTGGC
**
124837774 GTCTCTGTATTGATGGAGAGCA
1 GTCTCTGTATTGACAGAGAGCA
124837796 GTCTCTGTATTGACAGAGAGCA
1 GTCTCTGTATTGACAGAGAGCA
124837818 G
1 G
124837819 ATTAAGGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (22 bp):
GTCTCTGTATTGACAGAGAGCA
Found at i:124837811 original size:66 final size:66
Alignment explanation
Indices: 124837731--124837859 Score: 215
Period size: 66 Copynumber: 2.0 Consensus size: 66
124837721 AGATTTGGCA
*
124837731 TCTCTGTATTGACAGAGAGCAGATTGAA-GATAACAGATTTGGCGTCTCTGTATTGATGGAGAGC
1 TCTCTGTATTGACAGAGAGCAGATT-AAGGATAACAGATTTGGCGTCTCTGTATTGACGGAGAGC
124837795 AG
65 AG
* *
124837797 TCTCTGTATTGACAGAGAGCAGATTAAGGATAGCAGATTTGGCGTTTCTGTATTGACGGAGAG
1 TCTCTGTATTGACAGAGAGCAGATTAAGGATAACAGATTTGGCGTCTCTGTATTGACGGAGAG
124837860 TAGATCGAAG
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
65 2 0.03
66 57 0.97
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.29
Consensus pattern (66 bp):
TCTCTGTATTGACAGAGAGCAGATTAAGGATAACAGATTTGGCGTCTCTGTATTGACGGAGAGCA
G
Found at i:124837881 original size:110 final size:110
Alignment explanation
Indices: 124837686--124837906 Score: 309
Period size: 110 Copynumber: 2.0 Consensus size: 110
124837676 CAGATTTGGC
*
124837686 GTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGACAGAGAGC
1 GTCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGACAGAGAGC
* * **
124837751 AGATTGAAGATAACAGATTTGGCGTCTCTGTATTGATGGAGAGCA
66 AGATCGAAGATAACAAATTTGGCGTCTCTGTATTGACAGAGAGCA
* * * * *
124837796 GTCTCTGTATTGACAGAGAGCAGAT-TAAGGATAGCAGATTTGGCGTTTCTGTATTGACGGAGAG
1 GTCTCTGTATTGACAGAGAGCAGATCGAA-GATAACAGATTTGGCATCTCTGTATTGACAGAGAG
* * *
124837860 TAGATCGAAGATAACAAATTTGGTGTCTCTGTGTTGACAGAGAGCA
65 CAGATCGAAGATAACAAATTTGGCGTCTCTGTATTGACAGAGAGCA
124837906 G
1 G
124837907 ATCAAAGATA
Statistics
Matches: 97, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
109 2 0.02
110 95 0.98
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (110 bp):
GTCTCTGTATTGACAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGACAGAGAGC
AGATCGAAGATAACAAATTTGGCGTCTCTGTATTGACAGAGAGCA
Found at i:124837922 original size:154 final size:154
Alignment explanation
Indices: 124837642--124837950 Score: 460
Period size: 154 Copynumber: 2.0 Consensus size: 154
124837632 CAGATTTAGC
*
124837642 GTCTCTGTATTGACAGAGAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTGTCAGAGAGC
1 GTCTCTGTATTGACAGAGAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTGACAGAGAGC
* **
124837707 AGATCGAAGATAACAGATTTGGCATCTCTGTATTGACAGAGAGCAGATTGAAGATAACAGATTTG
66 AGATCGAAGATAACAAATTTGGCATCTCTGTATTGACAGAGAGCAGATCAAAGATAACAGATTTG
*
124837772 GCGTCTCTGTATTGATGGAGAGCA
131 GCGTCTCTGTATTGACGGAGAGCA
* * *
124837796 GTCTCTGTATTGACAGAGAGCAGAT-TAAGGAT-AGCAGATTTGGCGTTTCTGTATTGACGGAGA
1 GTCTCTGTATTGACAGAGAGCAGATCGAA-GATGA-CAGATTTGGCGTCTCTGTATTGACAGAGA
* ** * *
124837859 GTAGATCGAAGATAACAAATTTGGTGTCTCTGTGTTGACAGAGAGCAGATCAAAGATAGCAGATT
64 GCAGATCGAAGATAACAAATTTGGCATCTCTGTATTGACAGAGAGCAGATCAAAGATAACAGATT
*
124837924 TGGCGTCTTTGTATTGACGGAGAGCA
129 TGGCGTCTCTGTATTGACGGAGAGCA
124837950 G
1 G
124837951 ATCGAAGATA
Statistics
Matches: 139, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
153 3 0.02
154 136 0.98
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (154 bp):
GTCTCTGTATTGACAGAGAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTGACAGAGAGC
AGATCGAAGATAACAAATTTGGCATCTCTGTATTGACAGAGAGCAGATCAAAGATAACAGATTTG
GCGTCTCTGTATTGACGGAGAGCA
Found at i:124838551 original size:88 final size:87
Alignment explanation
Indices: 124837809--124838808 Score: 337
Period size: 88 Copynumber: 11.3 Consensus size: 87
124837799 TCTGTATTGA
* * * * * *
124837809 CAGAGAGCAGATT-AAGGATAGCAGATTTGGCGTTTCTGTATTGA-C-GGAGAGTAGATCGAAGA
1 CAGAGAGCAGATTGAA-GATAGCAGATTTGGCCTCTCTGTATTAAGCAAG-GAGCAGATCAAAGA
* * ** *
124837871 TAACAAATTTGGTGTCTCTGTG-TTG
64 TAGCAGA-TTGGCAT-TCTGAGTTTG
** * * * * *
124837896 ACAGAGAGCAGATCAAAGATAGCAGATTTGGCGTCTTTGTATTGA-C-GGAGAGCAGATCGAAGA
1 -CAGAGAGCAGATTGAAGATAGCAGATTTGGCCTCTCTGTATTAAGCAAG-GAGCAGATCAAAGA
* **
124837959 TAACAGATTTGGCATCTCTGTA-TTAA
64 TAGCAGA-TTGGCAT-TCTG-AGTTTG
* * * * * * * * *
124837985 CGGAAAGTAAATCGAAGATAGCAGATTTGGCGTCTCTGTATTGA-C-GGAGAGCAGATCGAAGAT
1 CAGAGAGCAGATTGAAGATAGCAGATTTGGCCTCTCTGTATTAAGCAAG-GAGCAGATCAAAGAT
* **
124838048 AGTAGATTTGG--TGTCTCTGTATTG
65 AGCAGA-TTGGCAT-TCTGAGT-TTG
* * * * * * *
124838072 ACGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGA-C-GGAGAGCAGATCGAAGA
1 -CAGAGAGCAGATTGAAGATAGCAGATTTGGCCTCTCTGTATTAAGCAAG-GAGCAGATCAAAGA
*
124838135 TAACAGATTTGGCATCTCT--GTATTG
64 TAGCAGA-TTGGCAT-TCTGAGT-TTG
* * * * * * * *
124838160 ACGGAAAGTAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGA-C-GGAGAGCAGATCGAAGA
1 -CAGAGAGCAGATTGAAGATAGCAGATTTGGCCTCTCTGTATTAAGCAAG-GAGCAGATCAAAGA
*
124838223 TAGTAGATTTGGCATCTCT-A-TATTG
64 TAGCAGA-TTGGCAT-TCTGAGT-TTG
* * * * * *
124838248 ACGGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGA-C-GGAGAGCAGATCGAAGA
1 -CAGAGAGCAGATTGAAGATAGCAGATTTGGCCTCTCTGTATTAAGCAAG-GAGCAGATCAAAGA
* * *
124838311 TAACAGATTTGGC-GTCTTAGTATTG
64 TAGCAGA-TTGGCATTCTGAGT-TTG
* * * * * * * *
124838336 ACAAAGAGCAGATTGAAAATAACAGATTTTGCGTCTCTGTGTT-AG-ATGGGGAGTAGAT-AGAA
1 -CAGAGAGCAGATTGAAGATAGCAGATTTGGCCTCTCTGTATTAAGCA--AGGAGCAGATCA-AA
* * *
124838398 GATAGCAGATTTGACATT-TGTATGCTTA
62 GATAGCAGA-TTGGCATTCTG-A-GTTTG
* * * *
124838426 CATCAAAACAGATTGAAGAT-GACAGATTTGGCCTCTCTGTATTAAGCAAGGAGTAGATCAAAGA
1 CA-GAGAGCAGATTGAAGATAG-CAGATTTGGCCTCTCTGTATTAAGCAAGGAGCAGATCAAAGA
**
124838490 TTTCAGCA-TGGCATTCCTGAGTTTG
64 TAGCAG-ATTGGCATT-CTGAGTTTG
* * * ** * *
124838515 CAGGGAGCA-AGTTGAAGATAGTAGATTTGGCGTCTCTGTATTAA-CAAATAACAGATCGAAGAT
1 CAGAGAGCAGA-TTGAAGATAGCAGATTTGGCCTCTCTGTATTAAGCAAGGAGCAGATCAAAGAT
* *
124838578 AGCAGATTTGGC-GTCTTAGTATTG
65 AGCAGA-TTGGCATTCTGAGT-TTG
* * ** * * * *
124838602 ACAAAGAGCAGATTGAAAATAATAGATTTTGCGTCTCTGTGTT-AG-ATAGGGAGCAGATCGAAG
1 -CAGAGAGCAGATTGAAGATAGCAGATTTGGCCTCTCTGTATTAAGCA-A-GGAGCAGATCAAAG
* * *
124838665 ATAGCAGATCTGACATT-TGTATGCTTA
63 ATAGCAGAT-TGGCATTCTG-A-GTTTG
* * * *
124838692 CATCAAAGCAGATTGAAGAT-GACAGATTTAGCCTCTCTGTATTAAGCAAGGAGTAGATCAAAGA
1 CA-GAGAGCAGATTGAAGATAG-CAGATTTGGCCTCTCTGTATTAAGCAAGGAGCAGATCAAAGA
** *
124838756 TTTCAGCA-TGGCGTTCCTGAGTTTG
64 TAGCAG-ATTGGCATT-CTGAGTTTG
*
124838781 CAGGGAGCA-AGTTGAAGATAGCAGATTT
1 CAGAGAGCAGA-TTGAAGATAGCAGATTT
124838809 AACATTCCTG
Statistics
Matches: 745, Mismatches: 117, Indels: 100
0.77 0.12 0.10
Matches are distributed among these distances:
86 14 0.02
87 28 0.04
88 498 0.67
89 77 0.10
90 112 0.15
91 14 0.02
92 2 0.00
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.28
Consensus pattern (87 bp):
CAGAGAGCAGATTGAAGATAGCAGATTTGGCCTCTCTGTATTAAGCAAGGAGCAGATCAAAGATA
GCAGATTGGCATTCTGAGTTTG
Found at i:124838576 original size:266 final size:266
Alignment explanation
Indices: 124837998--124838808 Score: 1049
Period size: 266 Copynumber: 3.1 Consensus size: 266
124837988 AAAGTAAATC
* *
124837998 GAAGATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGATAGTAGATTTGGTGTC
1 GAAGATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGATAGCAGATTTGGCGTC
** * * * * * *
124838063 TCT-GTATTGACGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATT-GACGGAGAGCA
66 T-TAGTATTGACAAAGAGCAGATTGAAAATAACAGATTTTGCGTCTCTGTGTTAGATGGGGAGCA
* * * ** * *
124838126 GATCGAAGATAACAGATTTGGCATCTCTGTAT--TGAC-GGAAAGTAGATCGAAGAT-AGCAGAT
130 GATCGAAGATAGCAGATTTGACAT-T-TGTATGCTTACATCAAAGCAGATTGAAGATGA-CAGAT
* * * * * *
124838187 TTGGCGTCTCTGTATTGA-C-GGAGAGCAGATCGAAGATAGT-AG-ATTTGGCA-TCTCT-A-TA
192 TTGGCCTCTCTGTATTAAGCAAG-GAGTAGATCAAAGAT-TTCAGCA--TGGCATTC-CTGAGT-
*
124838245 TTG-ACGGAGAGC-AGATC
251 TTGCA-GG-GAGCAAG-TT
*
124838262 GAAGATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGATAACAGATTTGGCGTC
1 GAAGATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGATAGCAGATTTGGCGTC
*
124838327 TTAGTATTGACAAAGAGCAGATTGAAAATAACAGATTTTGCGTCTCTGTGTTAGATGGGGAGTAG
66 TTAGTATTGACAAAGAGCAGATTGAAAATAACAGATTTTGCGTCTCTGTGTTAGATGGGGAGCAG
* *
124838392 ATAGAAGATAGCAGATTTGACATTTGTATGCTTACATCAAAACAGATTGAAGATGACAGATTTGG
131 ATCGAAGATAGCAGATTTGACATTTGTATGCTTACATCAAAGCAGATTGAAGATGACAGATTTGG
124838457 CCTCTCTGTATTAAGCAAGGAGTAGATCAAAGATTTCAGCATGGCATTCCTGAGTTTGCAGGGAG
196 CCTCTCTGTATTAAGCAAGGAGTAGATCAAAGATTTCAGCATGGCATTCCTGAGTTTGCAGGGAG
124838522 CAAGTT
261 CAAGTT
* * ** * *
124838528 GAAGATAGTAGATTTGGCGTCTCTGTATTAACAAATAACAGATCGAAGATAGCAGATTTGGCGTC
1 GAAGATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGATAGCAGATTTGGCGTC
* *
124838593 TTAGTATTGACAAAGAGCAGATTGAAAATAATAGATTTTGCGTCTCTGTGTTAGATAGGGAGCAG
66 TTAGTATTGACAAAGAGCAGATTGAAAATAACAGATTTTGCGTCTCTGTGTTAGATGGGGAGCAG
* *
124838658 ATCGAAGATAGCAGATCTGACATTTGTATGCTTACATCAAAGCAGATTGAAGATGACAGATTTAG
131 ATCGAAGATAGCAGATTTGACATTTGTATGCTTACATCAAAGCAGATTGAAGATGACAGATTTGG
*
124838723 CCTCTCTGTATTAAGCAAGGAGTAGATCAAAGATTTCAGCATGGCGTTCCTGAGTTTGCAGGGAG
196 CCTCTCTGTATTAAGCAAGGAGTAGATCAAAGATTTCAGCATGGCATTCCTGAGTTTGCAGGGAG
124838788 CAAGTT
261 CAAGTT
124838794 GAAGATAGCAGATTT
1 GAAGATAGCAGATTT
124838809 AACATTCCTG
Statistics
Matches: 488, Mismatches: 44, Indels: 28
0.87 0.08 0.05
Matches are distributed among these distances:
263 6 0.01
264 107 0.22
265 32 0.07
266 312 0.64
267 27 0.06
268 4 0.01
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.28
Consensus pattern (266 bp):
GAAGATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGCAGATCGAAGATAGCAGATTTGGCGTC
TTAGTATTGACAAAGAGCAGATTGAAAATAACAGATTTTGCGTCTCTGTGTTAGATGGGGAGCAG
ATCGAAGATAGCAGATTTGACATTTGTATGCTTACATCAAAGCAGATTGAAGATGACAGATTTGG
CCTCTCTGTATTAAGCAAGGAGTAGATCAAAGATTTCAGCATGGCATTCCTGAGTTTGCAGGGAG
CAAGTT
Found at i:124839000 original size:4 final size:4
Alignment explanation
Indices: 124838991--124839027 Score: 65
Period size: 4 Copynumber: 9.2 Consensus size: 4
124838981 TTGCCGGCCC
*
124838991 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA GTAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
124839028 AAAACAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:124843672 original size:17 final size:19
Alignment explanation
Indices: 124843650--124843696 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 19
124843640 CTACAAGATA
124843650 AATATTAAATTAA-A-TTT
1 AATATTAAATTAACACTTT
124843667 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAA-CACTTT
124843687 AATATTAAAT
1 AATATTAAAT
124843697 AAAAAATACT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
17 11 0.44
18 1 0.04
19 2 0.08
20 11 0.44
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (19 bp):
AATATTAAATTAACACTTT
Found at i:124849890 original size:20 final size:20
Alignment explanation
Indices: 124849865--124849914 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
124849855 CATTTTCCTT
*
124849865 CTGAAAAAAATCAAATTCAA
1 CTGAAAAAAATAAAATTCAA
* *
124849885 CTGAAAATATTAAAATTCAA
1 CTGAAAAAAATAAAATTCAA
**
124849905 GAGAAAAAAA
1 CTGAAAAAAA
124849915 CTGATGTTAC
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.62, C:0.10, G:0.08, T:0.20
Consensus pattern (20 bp):
CTGAAAAAAATAAAATTCAA
Found at i:124851108 original size:2 final size:2
Alignment explanation
Indices: 124851101--124851136 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
124851091 CATTTCCTTT
*
124851101 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
124851137 ATGCTTTGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:124854952 original size:8 final size:8
Alignment explanation
Indices: 124854939--124854964 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
124854929 CATCAGTAAA
124854939 ATATTTTT
1 ATATTTTT
124854947 ATATTTTT
1 ATATTTTT
124854955 ATATTTTT
1 ATATTTTT
124854963 AT
1 AT
124854965 TGGTATTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
ATATTTTT
Found at i:124857082 original size:76 final size:76
Alignment explanation
Indices: 124856956--124857109 Score: 290
Period size: 76 Copynumber: 2.0 Consensus size: 76
124856946 ATTATCTTCC
* *
124856956 ATTGTTTCGATTAAAATATTATCATAAATTGTTCTTAAAAAATTCTTGTTAATACAAAAGAAATC
1 ATTGTTTCGATTAAAATATTATCATAAATTGTTCTTAAAAAATTCTTGTTAACACAAAAAAAATC
124857021 ATTTCGACGTG
66 ATTTCGACGTG
124857032 ATTGTTTCGATTAAAATATTATCATAAATTGTTCTTAAAAAATTCTTGTTAACACAAAAAAAATC
1 ATTGTTTCGATTAAAATATTATCATAAATTGTTCTTAAAAAATTCTTGTTAACACAAAAAAAATC
124857097 ATTTCGACGTG
66 ATTTCGACGTG
124857108 AT
1 AT
124857110 GAGTTAAATT
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.40, C:0.11, G:0.10, T:0.39
Consensus pattern (76 bp):
ATTGTTTCGATTAAAATATTATCATAAATTGTTCTTAAAAAATTCTTGTTAACACAAAAAAAATC
ATTTCGACGTG
Found at i:124858646 original size:2 final size:2
Alignment explanation
Indices: 124858639--124858685 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
124858629 TACTCTACCG
124858639 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
124858681 TA TA T
1 TA TA T
124858686 GTACAAGCCC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:124859790 original size:18 final size:17
Alignment explanation
Indices: 124859763--124859919 Score: 121
Period size: 15 Copynumber: 9.4 Consensus size: 17
124859753 TGCTATTTTT
*
124859763 TTATTGCTATCATTATTA
1 TTATTACTAT-ATTATTA
* *
124859781 TTATTCCTATGTGTATTA
1 TTATTACTATAT-TATTA
* *
124859799 TTATTACTTATATGATTG
1 TTATTAC-TATATTATTA
*
124859817 TTATTTCTACTATTATTA
1 TTATTACTA-TATTATTA
124859835 TTATTA-T-TATTATTA
1 TTATTACTATATTATTA
124859850 TTATTA-T-TATTATTA
1 TTATTACTATATTATTA
124859865 TTATTA-T-TATTATTA
1 TTATTACTATATTATTA
* * *
124859880 TTATGAAC-ATATCAGTA
1 TTAT-TACTATATTATTA
* *
124859897 TTATTAATATATTGTTA
1 TTATTACTATATTATTA
124859914 TTATTA
1 TTATTA
124859920 GTATTATTGT
Statistics
Matches: 114, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
15 42 0.37
16 2 0.02
17 26 0.23
18 40 0.35
19 4 0.04
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.58
Consensus pattern (17 bp):
TTATTACTATATTATTA
Found at i:124860016 original size:22 final size:23
Alignment explanation
Indices: 124859973--124860019 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
124859963 TTTATTTTTA
*
124859973 TTATTTCTATTATTGTTATTATATT
1 TTATTACTATTATTG-T-TTATATT
124859998 TTATTACTATTATTG-TTATATT
1 TTATTACTATTATTGTTTATATT
124860020 ATCGTTATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
25 14 0.67
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.66
Consensus pattern (23 bp):
TTATTACTATTATTGTTTATATT
Found at i:124860065 original size:3 final size:3
Alignment explanation
Indices: 124859794--124860046 Score: 137
Period size: 3 Copynumber: 85.3 Consensus size: 3
124859784 TTCCTATGTG
* * *
124859794 TAT TAT TAT TACT TA- TAT GAT TGT TAT T-T CTAC TAT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
* *
124859839 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT GAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * * *
124859887 CA- TAT CAG TAT TAT TAA TA- TAT TGT TAT TAT TAG TAT TAT TGT CAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
124859933 TGT CAG TAT TAT T-T TCGT TACCT TTT TAT TTT TAT TTT TAT TAT T-T
1 TAT TAT TAT TAT TAT T-AT TA--T TAT TAT TAT TAT TAT TAT TAT TAT
* * *
124859979 CTAT TAT TGT TAT TA- TAT T-T TAT TAC TAT TAT TGT TA- TAT TAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
** * *
124860022 CGT TAT TAT TCT TAC TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
124860047 GTTAATGCAA
Statistics
Matches: 183, Mismatches: 52, Indels: 30
0.69 0.20 0.11
Matches are distributed among these distances:
2 15 0.08
3 160 0.87
4 6 0.03
5 2 0.01
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:124860616 original size:2 final size:2
Alignment explanation
Indices: 124860609--124860644 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
124860599 TAATACATAC
124860609 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
124860645 TCATATACCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:124860616 original size:20 final size:19
Alignment explanation
Indices: 124860550--124860616 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 19
124860540 TTGTATATAT
124860550 ATATATATTTTAATACTAC
1 ATATATATTTTAATACTAC
* ** *
124860569 GTATATATTTCTCTTATTA-
1 ATATATATTT-TAATACTAC
*
124860588 AGTAAATATTTTAATACATAC
1 A-TATATATTTTAATAC-TAC
124860609 ATATATAT
1 ATATATAT
124860617 ATATATATAT
Statistics
Matches: 34, Mismatches: 10, Indels: 7
0.67 0.20 0.14
Matches are distributed among these distances:
19 12 0.35
20 21 0.62
21 1 0.03
ACGTcount: A:0.40, C:0.09, G:0.03, T:0.48
Consensus pattern (19 bp):
ATATATATTTTAATACTAC
Found at i:124860772 original size:2 final size:2
Alignment explanation
Indices: 124860760--124860796 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
124860750 TATTATATGT
*
124860760 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
124860797 TCCATACTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:124862852 original size:2 final size:2
Alignment explanation
Indices: 124862845--124862877 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
124862835 AATTGGCAGA
124862845 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
124862878 ATTTCGAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:124864170 original size:6 final size:6
Alignment explanation
Indices: 124864161--124864195 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
124864151 TGCTGATGAG
124864161 GATGGA GATGGA GATGGA GATGGA GATGGA GATGG
1 GATGGA GATGGA GATGGA GATGGA GATGGA GATGG
124864196 TGAGGCTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.51, T:0.17
Consensus pattern (6 bp):
GATGGA
Found at i:124875707 original size:2 final size:2
Alignment explanation
Indices: 124875702--124875728 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
124875692 CTTTTAAATC
124875702 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
124875729 CCTTTCAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:124878415 original size:26 final size:26
Alignment explanation
Indices: 124878379--124878488 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
124878369 TGATACAAAT
124878379 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
124878405 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
124878431 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
124878457 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
124878483 TGATAA
1 TGATAA
124878489 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:124880006 original size:24 final size:25
Alignment explanation
Indices: 124879970--124880017 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
124879960 ACAGTTTTAC
124879970 CCCTAGAGATAAATT-ACCGAAATA
1 CCCTAGAGATAAATTGACCGAAATA
* * *
124879994 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGAGATAAATTGACCGAAAT
124880018 GCATGTTTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (25 bp):
CCCTAGAGATAAATTGACCGAAATA
Found at i:124884198 original size:26 final size:26
Alignment explanation
Indices: 124884169--124884278 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
124884159 TGATACAAAT
124884169 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
124884195 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
124884221 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
124884247 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
124884273 TGATAA
1 TGATAA
124884279 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:124885790 original size:26 final size:26
Alignment explanation
Indices: 124885760--124885812 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
124885750 TTTATAGTTT
*
124885760 TACCCTTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
124885786 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
124885812 T
1 T
124885813 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:124900741 original size:21 final size:21
Alignment explanation
Indices: 124900696--124900741 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
124900686 TAAAGTAGTT
* *
124900696 ATATATTATTTTTATAATATT
1 ATATATGATTTTTATAATATC
124900717 ATATATGATTTTTATTAAT-TC
1 ATATATGATTTTTA-TAATATC
124900738 ATAT
1 ATAT
124900742 TTTAATAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
ATATATGATTTTTATAATATC
Found at i:124904240 original size:46 final size:44
Alignment explanation
Indices: 124904143--124904251 Score: 139
Period size: 46 Copynumber: 2.4 Consensus size: 44
124904133 TATTACAACA
124904143 TCTATTCCATTCAACCAAACACAAGAATACAATTACAACTCTAT
1 TCTATTCCATTCAACCAAACACAAGAATACAATTACAACTCTAT
* * *
124904187 TCCATTCCATTCAACCAAACA-ACCGAATTACTGATTACAACTCTAT
1 TCTATTCCATTCAACCAAACACA-AGAA-TAC-AATTACAACTCTAT
* *
124904233 TCTATTCCCTCCAACCAAA
1 TCTATTCCATTCAACCAAA
124904252 TGTGCCCTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.41
45 3 0.05
46 29 0.52
ACGTcount: A:0.39, C:0.31, G:0.03, T:0.28
Consensus pattern (44 bp):
TCTATTCCATTCAACCAAACACAAGAATACAATTACAACTCTAT
Found at i:124909511 original size:95 final size:96
Alignment explanation
Indices: 124909388--124909590 Score: 257
Period size: 95 Copynumber: 2.1 Consensus size: 96
124909378 ATTTTTAAAT
* * ** *
124909388 TTTAGGGTTTTAAAGAAAAAAATTAAATAAATTAGGGTTTAGTGTTTGTTAATTAAATTAATTAC
1 TTTAGGGTTTTAAAGAAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTA-
124909453 T-AATTTT-AAAAATTAGATTATAGTTTAGTG
65 TAAATTTTAAAAAATTAGATTATAGTTTAGTG
* * * *
124909483 TTTATGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAT
1 TTTAGGGTTTTAAAGAAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTAT
* * *
124909548 AAATTTTAAAAAAATTAGATTAGGATTTTAGGG
66 AAATTTT-AAAAAATTAGATTA-TAGTTTAGTG
124909581 TTTAGGGTTT
1 TTTAGGGTTT
124909591 AGGGTTTTAA
Statistics
Matches: 91, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
94 1 0.01
95 61 0.67
97 13 0.14
98 16 0.18
ACGTcount: A:0.39, C:0.01, G:0.17, T:0.42
Consensus pattern (96 bp):
TTTAGGGTTTTAAAGAAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTAT
AAATTTTAAAAAATTAGATTATAGTTTAGTG
Found at i:124909910 original size:125 final size:126
Alignment explanation
Indices: 124909679--124910208 Score: 850
Period size: 125 Copynumber: 4.2 Consensus size: 126
124909669 TAATCTAAAA
* *
124909679 AAGCTTCTACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACGTGT
1 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGT
* ** *
124909744 CTGCGCAAATAGTGTCAAAAATGCTTCAAGCATAATACATTGTCAGCAAAAGTACTGAAAG
66 CTGCGCAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
*
124909805 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTATCTG-AAAAATAATTTTGAGAAGACGTGT
1 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGT
* * *
124909869 CTGTGTAAATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
66 CTGCGCAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
*
124909930 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACATGT
1 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGT
* *
124909995 CTGCGCAAAT-GTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGAAAG
66 CTGCGCAAATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
* * *
124910055 AAGCTCCCACGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGT
1 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGT
** *
124910120 CTGCATAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAG
66 CTGCGCAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
*
124910181 AAGCTCCCACGTGGACGCTCTTTTGCTA
1 AAGCTTCCACGTGGACGCTCTTTTGCTA
124910209 TAGTGGTTTC
Statistics
Matches: 376, Mismatches: 24, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
125 232 0.62
126 144 0.38
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (126 bp):
AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGT
CTGCGCAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
Found at i:124910122 original size:251 final size:251
Alignment explanation
Indices: 124909679--124910208 Score: 866
Period size: 251 Copynumber: 2.1 Consensus size: 251
124909669 TAATCTAAAA
* *
124909679 AAGCTTCTACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACGTGT
1 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACATGT
* *
124909744 CTGCGCAAATAGTGTCAAAAATGCTTCAAGCATAATACATTGTCAGCAAAAGTACTGAAAGAAGC
66 CTGCGCAAATAGTGTCAAAAACGCTTCAAGCAGAATACATTGTCAGCAAAAGTACTGAAAGAAGC
* **
124909809 TTCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAATAATTTTGAGAAGACGTGTCTGTG
131 TCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAATAATTTTGAGAAGACGTGTCTGCA
124909874 TAAATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
196 TAAATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
*
124909930 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACATGT
1 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACATGT
* * * *
124909995 CTGCGCAAAT-GTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGAAAGAAG
66 CTGCGCAAATAGT-GTCAAAAACGCTTCAAGCAGAATACATTGTCAGCAAAAGTACTGAAAGAAG
* * *
124910058 CTCCCACGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTG
130 CTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTG-AAAAATAATTTTGAGAAGACGTGTCTG
* *
124910123 CATAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAG
194 CATAAATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
*
124910181 AAGCTCCCACGTGGACGCTCTTTTGCTA
1 AAGCTTCCACGTGGACGCTCTTTTGCTA
124910209 TAGTGGTTTC
Statistics
Matches: 259, Mismatches: 18, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
250 77 0.30
251 182 0.70
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (251 bp):
AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACATGT
CTGCGCAAATAGTGTCAAAAACGCTTCAAGCAGAATACATTGTCAGCAAAAGTACTGAAAGAAGC
TCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAATAATTTTGAGAAGACGTGTCTGCA
TAAATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
Found at i:124913101 original size:18 final size:18
Alignment explanation
Indices: 124913078--124913342 Score: 140
Period size: 18 Copynumber: 14.3 Consensus size: 18
124913068 GAATAATTAT
124913078 TTATTCAGTAACAATCAG
1 TTATTCAGTAACAATCAG
* *
124913096 TTATTCAGTAATAATCAA
1 TTATTCAGTAACAATCAG
* * *
124913114 TTATTCAATAATAACCAG
1 TTATTCAGTAACAATCAG
* *
124913132 TTATTCAGTATCGATTAATTGATCGG
1 TTATTCAGTA---A--CA---ATCAG
* * * *
124913158 TTATCCAATAACAGTCAA
1 TTATTCAGTAACAATCAG
124913176 TTATTCAGTAA-AATCAG
1 TTATTCAGTAACAATCAG
* * *
124913193 ATATTCAGTAACTATTAAG
1 TTATTCAGTAAC-AATCAG
* *
124913212 TTATTCAGTAGCAGTCA-
1 TTATTCAGTAACAATCAG
* *
124913229 TTCATTCAGTAATAATCAA
1 TT-ATTCAGTAACAATCAG
* *
124913248 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAATCAG
*
124913266 TTATTCAGTAACAGTCTA-
1 TTATTCAGTAACAATC-AG
* * * *
124913284 ATATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAG
* * * *
124913302 TTATCCGGTAACAGTCAA
1 TTATTCAGTAACAATCAG
*
124913320 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAATCAG
124913338 TTATT
1 TTATT
124913343 TTATACCTTT
Statistics
Matches: 191, Mismatches: 42, Indels: 28
0.73 0.16 0.11
Matches are distributed among these distances:
17 17 0.09
18 142 0.74
19 17 0.09
21 2 0.01
23 2 0.01
26 11 0.06
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAACAATCAG
Found at i:124913118 original size:36 final size:36
Alignment explanation
Indices: 124913065--124913342 Score: 161
Period size: 36 Copynumber: 7.5 Consensus size: 36
124913055 TCATTAACAC
* * *
124913065 TCAG-AATAATTATTTATTCAGTAACAATCAGTTAT
1 TCAGTAATAATCAATTATTCAGTAACAATCAATTAT
* * * *
124913100 TCAGTAATAATCAATTATTCAATAATAACCAGTTAT
1 TCAGTAATAATCAATTATTCAGTAACAATCAATTAT
** * * *
124913136 TCAGTATCGATTAATTGATCGGTTATCCAATAACAGTCAATTAT
1 TCAGTA---A-T-A---ATCAATTATTCAGTAACAATCAATTAT
* *
124913180 TCAGTAA-AATCAGA-TATTCAGTAACTATTAAGTTAT
1 TCAGTAATAATCA-ATTATTCAGTAACAATCAA-TTAT
** * *
124913216 TCAGTAGCAGTC-ATTCATTCAGTAATAATCAATTAT
1 TCAGTAATAATCAATT-ATTCAGTAACAATCAATTAT
* * *
124913252 TCAGTAATATTCAGTTATTCAGTAACAGTCTAA-TAT
1 TCAGTAATAATCAATTATTCAGTAACAATC-AATTAT
* * * * * *
124913288 CCAGTAACAGTCAATTATCCGGTAACAGTCAATTAT
1 TCAGTAATAATCAATTATTCAGTAACAATCAATTAT
*
124913324 TCAGTAATAATCAGTTATT
1 TCAGTAATAATCAATTATT
124913343 TTATACCTTT
Statistics
Matches: 185, Mismatches: 41, Indels: 33
0.71 0.16 0.13
Matches are distributed among these distances:
35 22 0.12
36 112 0.61
37 20 0.11
38 1 0.01
39 1 0.01
40 1 0.01
41 2 0.01
44 26 0.14
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (36 bp):
TCAGTAATAATCAATTATTCAGTAACAATCAATTAT
Found at i:124913228 original size:54 final size:54
Alignment explanation
Indices: 124913157--124913305 Score: 171
Period size: 54 Copynumber: 2.8 Consensus size: 54
124913147 TAATTGATCG
* *
124913157 GTTATCCAATAACAGTCAATTATTCAGTAA-AATCAGA-TATTCAGTAACTATTAA
1 GTTATTCAGTAACAGTCAATTATTCAGTAATAATCA-ATTATTCAGTAA-TATTAA
* *
124913211 GTTATTCAGTAGCAGTC-ATTCATTCAGTAATAATCAATTATTCAGTAATATTCA
1 GTTATTCAGTAACAGTCAATT-ATTCAGTAATAATCAATTATTCAGTAATATTAA
* * *
124913265 GTTATTCAGTAACAGTCTAA-TATCCAGTAACAGTCAATTAT
1 GTTATTCAGTAACAGTC-AATTATTCAGTAATAATCAATTAT
124913306 CCGGTAACAG
Statistics
Matches: 82, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
53 3 0.04
54 62 0.76
55 16 0.20
56 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (54 bp):
GTTATTCAGTAACAGTCAATTATTCAGTAATAATCAATTATTCAGTAATATTAA
Found at i:124913570 original size:45 final size:45
Alignment explanation
Indices: 124913510--124913619 Score: 159
Period size: 45 Copynumber: 2.5 Consensus size: 45
124913500 AACAAATCCG
* * *
124913510 GAAT-AGTAACAGTAACAGTAACAATATTTGACACACATAGTGCC
1 GAATCAGTAACAGTAACAGTAACAATATTCGACACACAAAATGCC
* *
124913554 GAATCGGTAACGGTAACAGTAACAATATTCGACACACAAAATGCC
1 GAATCAGTAACAGTAACAGTAACAATATTCGACACACAAAATGCC
*
124913599 GAATCAGTAACAGTAGCAGTA
1 GAATCAGTAACAGTAACAGTA
124913620 GCGGTAACAG
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 4 0.07
45 53 0.93
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.20
Consensus pattern (45 bp):
GAATCAGTAACAGTAACAGTAACAATATTCGACACACAAAATGCC
Found at i:124914042 original size:10 final size:10
Alignment explanation
Indices: 124914028--124914062 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
124914018 AATTAATCAT
124914028 AATTCCATTC
1 AATTCCATTC
*
124914038 CATTCCATTC
1 AATTCCATTC
*
124914048 AATTCAATTC
1 AATTCCATTC
124914058 AATTC
1 AATTC
124914063 AAATTCACCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (10 bp):
AATTCCATTC
Found at i:124915330 original size:9 final size:9
Alignment explanation
Indices: 124915312--124915346 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
124915302 TTTCTTTTTC
*
124915312 ATTTCTTTT
1 ATTTCATTT
124915321 ATTTCATTT
1 ATTTCATTT
124915330 ATTTC-TTT
1 ATTTCATTT
124915338 ATTTCATTT
1 ATTTCATTT
124915347 CTTTATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.71
Consensus pattern (9 bp):
ATTTCATTT
Found at i:124915338 original size:17 final size:18
Alignment explanation
Indices: 124915312--124915358 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
124915302 TTTCTTTTTC
124915312 ATTTCTTTTATTTCATTT
1 ATTTCTTTTATTTCATTT
124915330 ATTTC-TTTATTTCATTT
1 ATTTCTTTTATTTCATTT
* *
124915347 CTTTATTTTATT
1 ATTTCTTTTATT
124915359 ATTAAACTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 15 0.58
18 11 0.42
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.72
Consensus pattern (18 bp):
ATTTCTTTTATTTCATTT
Found at i:124915348 original size:13 final size:13
Alignment explanation
Indices: 124915312--124915354 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
124915302 TTTCTTTTTC
* *
124915312 ATTTCTTTTATTT
1 ATTTCATTTCTTT
124915325 CATTT-ATTTCTTT
1 -ATTTCATTTCTTT
124915338 ATTTCATTTCTTT
1 ATTTCATTTCTTT
124915351 ATTT
1 ATTT
124915355 TATTATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 4 0.15
13 18 0.69
14 4 0.15
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (13 bp):
ATTTCATTTCTTT
Found at i:124916835 original size:116 final size:116
Alignment explanation
Indices: 124916660--124917274 Score: 1106
Period size: 116 Copynumber: 5.3 Consensus size: 116
124916650 TTTATATTTT
* *
124916660 ATTACATGAAATAATATAAAAATATTCAAAATATTGCTTTATTTAAAATAATTT-TCATTTTATT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCT-ATTTTATT
* * *
124916724 AAAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATATT
65 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* * *
124916776 ATCACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATCTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
*
124916841 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAATCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
124916892 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
124916957 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
124917008 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
*
124917073 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
124917124 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
*
124917189 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACATTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
124917240 ATTACATGAAATAATATAAAAAGATTCAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
124917275 TGTACAAATA
Statistics
Matches: 481, Mismatches: 17, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
116 481 1.00
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:124917685 original size:18 final size:18
Alignment explanation
Indices: 124917659--124917701 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
124917649 GACTAGAAAA
* *
124917659 AGGAAACATATAAGGGCT
1 AGGATACATAAAAGGGCT
*
124917677 AGGATACATAAAAGGGTT
1 AGGATACATAAAAGGGCT
124917695 AGGATAC
1 AGGATAC
124917702 GTACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:124918328 original size:7 final size:7
Alignment explanation
Indices: 124918318--124918344 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
124918308 GTTAAATAAA
124918318 AAATACT
1 AAATACT
124918325 AAATACT
1 AAATACT
124918332 AAATACT
1 AAATACT
124918339 AAATAC
1 AAATAC
124918345 GAATCCACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (7 bp):
AAATACT
Found at i:124918329 original size:14 final size:14
Alignment explanation
Indices: 124918310--124918343 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
124918300 AAATATTAGT
124918310 TAAATAAAAAATAC
1 TAAATAAAAAATAC
**
124918324 TAAATACTAAATAC
1 TAAATAAAAAATAC
124918338 TAAATA
1 TAAATA
124918344 CGAATCCACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAATAAAAAATAC
Found at i:124919452 original size:15 final size:15
Alignment explanation
Indices: 124919432--124919462 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
124919422 TTTTTATTTT
*
124919432 AAAAAATAAATTTAG
1 AAAAAATAAAATTAG
124919447 AAAAAATAAAATTAG
1 AAAAAATAAAATTAG
124919462 A
1 A
124919463 GCTTTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (15 bp):
AAAAAATAAAATTAG
Found at i:124919512 original size:11 final size:11
Alignment explanation
Indices: 124919489--124919546 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
124919479 TAACGAGAGT
*
124919489 TTTGAGAGGAA
1 TTTGAGAGAAA
*
124919500 TTTAAGAGAAA
1 TTTGAGAGAAA
124919511 TTTGAGAG--A
1 TTTGAGAGAAA
*
124919520 TTTGAGAGAAT
1 TTTGAGAGAAA
*
124919531 TTTGAGAGAAT
1 TTTGAGAGAAA
124919542 TTTGA
1 TTTGA
124919547 AAGATTGAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
9 9 0.22
11 32 0.78
ACGTcount: A:0.38, C:0.00, G:0.28, T:0.34
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:124919518 original size:31 final size:31
Alignment explanation
Indices: 124919483--124919552 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
124919473 AAAAATTAAC
*
124919483 GAGAGTTTTGAGAGGAA-TTTAAGAGAAATTT
1 GAGAGATTTGAGA-GAATTTTAAGAGAAATTT
* *
124919514 GAGAGATTTGAGAGAATTTTGAGAGAATTTT
1 GAGAGATTTGAGAGAATTTTAAGAGAAATTT
*
124919545 GAAAGATT
1 GAGAGATT
124919553 GAAGATTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 3 0.09
31 31 0.91
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.33
Consensus pattern (31 bp):
GAGAGATTTGAGAGAATTTTAAGAGAAATTT
Found at i:124919522 original size:20 final size:20
Alignment explanation
Indices: 124919489--124919539 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
124919479 TAACGAGAGT
124919489 TTTGAGAGGAATTTAAGAGAAA
1 TTTGAGA-G-ATTTAAGAGAAA
* *
124919511 TTTGAGAGATTTGAGAGAAT
1 TTTGAGAGATTTAAGAGAAA
124919531 TTTGAGAGA
1 TTTGAGAGA
124919540 ATTTTGAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 19 0.70
21 1 0.04
22 7 0.26
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.31
Consensus pattern (20 bp):
TTTGAGAGATTTAAGAGAAA
Found at i:124925553 original size:46 final size:46
Alignment explanation
Indices: 124925501--124925682 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
124925491 AGTGTGCTCT
* *
124925501 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
124925547 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
124925593 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
124925639 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
124925683 TCATGTCAAA
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 123 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:124931314 original size:21 final size:21
Alignment explanation
Indices: 124931288--124931329 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
124931278 ACTGCTCAGC
124931288 TCATAATGAACTTTCCTCTTT
1 TCATAATGAACTTTCCTCTTT
124931309 TCATAATGAACTTTCCTCTTT
1 TCATAATGAACTTTCCTCTTT
124931330 CTCTTCCTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.05, T:0.48
Consensus pattern (21 bp):
TCATAATGAACTTTCCTCTTT
Found at i:124933285 original size:39 final size:39
Alignment explanation
Indices: 124933231--124933309 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
124933221 CACGAGTTAG
*
124933231 TCTCACGAGTTAACATCTAATACGTAGAAAAAGTTTTTT
1 TCTCACGAGTTAACATCTAATACGAAGAAAAAGTTTTTT
124933270 TCTCACGAGTTAACATCTAATACGAAGAAAAAGTTTTTT
1 TCTCACGAGTTAACATCTAATACGAAGAAAAAGTTTTTT
124933309 T
1 T
124933310 TTACTAAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (39 bp):
TCTCACGAGTTAACATCTAATACGAAGAAAAAGTTTTTT
Found at i:124934041 original size:21 final size:20
Alignment explanation
Indices: 124934017--124934057 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
124934007 ACATATATTT
124934017 TTTATGCTAAAAAATTAATTC
1 TTTATGC-AAAAAATTAATTC
* *
124934038 TTTATGCCAAAACTTAATTC
1 TTTATGCAAAAAATTAATTC
124934058 GAAAGCATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.39, C:0.15, G:0.05, T:0.41
Consensus pattern (20 bp):
TTTATGCAAAAAATTAATTC
Found at i:124934651 original size:24 final size:24
Alignment explanation
Indices: 124934606--124934653 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
124934596 ACTTAATATT
***
124934606 AATTAACATTTTCTATTCATAAAA
1 AATTAACATTTTCTAAAAATAAAA
124934630 AATTAACATTTTCTAAAAATAAAA
1 AATTAACATTTTCTAAAAATAAAA
124934654 CAAAATAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (24 bp):
AATTAACATTTTCTAAAAATAAAA
Found at i:124934974 original size:30 final size:29
Alignment explanation
Indices: 124934896--124934985 Score: 81
Period size: 30 Copynumber: 3.0 Consensus size: 29
124934886 TTTGTTATAT
* * *
124934896 AAATTTTTATTTGGTATAATTGTACACATG
1 AAATTTTTATTTTGT-TCATTGTAAACATG
* * * *
124934926 AAAATTGTGTTTCTGTTCATTGTATACATG
1 AAATTTTTATTT-TGTTCATTGTAAACATG
124934956 AAATTTTTATTTTAGTTCAATTGTAAACAT
1 AAATTTTTATTTT-GTTC-ATTGTAAACAT
124934986 TTAAATAAAC
Statistics
Matches: 47, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
29 1 0.02
30 34 0.72
31 12 0.26
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.48
Consensus pattern (29 bp):
AAATTTTTATTTTGTTCATTGTAAACATG
Found at i:124938863 original size:49 final size:49
Alignment explanation
Indices: 124938754--124938997 Score: 276
Period size: 49 Copynumber: 4.9 Consensus size: 49
124938744 TAGCCAAAGC
* * * *
124938754 TATCTGGTACACATATTAGCCTGTACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * *
124938803 TATCCGGTACACATAGTAG-CTGCAGTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * *
124938852 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * *
124938903 TATC-GAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTG-GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
124938952 AATCAGGTACACGTAGTAGCCTGAACTTAGTACTACACACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
124938998 TCACAATAGA
Statistics
Matches: 162, Mismatches: 27, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
48 22 0.14
49 73 0.45
50 30 0.19
51 37 0.23
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:124938966 original size:100 final size:98
Alignment explanation
Indices: 124938759--124938997 Score: 293
Period size: 100 Copynumber: 2.4 Consensus size: 98
124938749 AAAGCTATCT
* * * * *
124938759 GGTACACATATTAGCCTGTACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCT
1 GGTACACGTAGTAGCCTGAACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCT
* * * *
124938824 GCAGTTAGTACTACACACGTGACCTAACCATCT
66 GCACTTAGTACTACACACGCGACCTAACAATCA
* * * *
124938857 GATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAT-CGAGTACGCATAGTA
1 GGTACACGTAGTAGCCTGAACTTAGTACTACACACGTGA-CCAA-TTATCCG-GTACACATAGTA
* *
124938921 GCCTGCACTTAGTACTACACATGCGACC-AATAATCA
63 G-CTGCACTTAGTACTACACACGCGACCTAACAATCA
124938957 GGTACACGTAGTAGCCTGAACTTAGTACTACACACGTGACC
1 GGTACACGTAGTAGCCTGAACTTAGTACTACACACGTGACC
124938998 TCACAATAGA
Statistics
Matches: 120, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
98 33 0.28
99 6 0.05
100 58 0.48
101 23 0.19
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (98 bp):
GGTACACGTAGTAGCCTGAACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCT
GCACTTAGTACTACACACGCGACCTAACAATCA
Found at i:124940539 original size:45 final size:44
Alignment explanation
Indices: 124940439--124940545 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
124940429 TGTCTTTGAC
** * * *
124940439 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
124940483 ATGGACTTACATGGCTCAATCCTGTCT-CAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
124940528 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
124940546 TTTCGTTCTG
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
43 9 0.16
44 23 0.42
45 23 0.42
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:124941688 original size:2 final size:2
Alignment explanation
Indices: 124941681--124941706 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
124941671 TAATAATAAA
124941681 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
124941707 TTACCCTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.