Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 408 of 433
Found at i:125936030 original size:24 final size:22
Alignment explanation
Indices: 125935986--125936036 Score: 59
Period size: 24 Copynumber: 2.3 Consensus size: 22
125935976 ACTTTAATAC
*
125935986 TATATTATGTATACATTTTTTA
1 TATATTATGTATACATCTTTTA
*
125936008 TATATTACGTGTATATATCTTTTA
1 TATATTA--TGTATACATCTTTTA
125936032 -ATATT
1 TATATT
125936037 GTATTTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 7 0.28
23 5 0.20
24 13 0.52
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (22 bp):
TATATTATGTATACATCTTTTA
Found at i:125936044 original size:37 final size:36
Alignment explanation
Indices: 125936003--125936077 Score: 98
Period size: 37 Copynumber: 2.1 Consensus size: 36
125935993 TGTATACATT
* * *
125936003 TTTTATATAT-TACGTGTATATATCTTTTAATATTGTA
1 TTTTATATATGT-CATGTATATAT-TTCTAATATTATA
125936040 TTTTATATATGTCATGTATATATTTCTAATATTATA
1 TTTTATATATGTCATGTATATATTTCTAATATTATA
125936076 TT
1 TT
125936078 ATATTTTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 13 0.38
37 20 0.59
38 1 0.03
ACGTcount: A:0.31, C:0.05, G:0.07, T:0.57
Consensus pattern (36 bp):
TTTTATATATGTCATGTATATATTTCTAATATTATA
Found at i:125936148 original size:26 final size:27
Alignment explanation
Indices: 125936068--125936173 Score: 96
Period size: 27 Copynumber: 4.1 Consensus size: 27
125936058 TATATTTCTA
* *
125936068 ATATTATAT-TATATTTTTTACAT-ATT
1 ATATTATGTATATATTTTTTA-ATAACT
*
125936094 ATCTTATGTATATATTTTTTAATAACT
1 ATATTATGTATATATTTTTTAATAACT
* **
125936121 ATATTATGTATGTATTTTTTAA-CGCT
1 ATATTATGTATATATTTTTTAATAACT
* *
125936147 ATATTATGTACACA-TTTTTAAT-ACT
1 ATATTATGTATATATTTTTTAATAACT
125936172 AT
1 AT
125936174 GTATATACCT
Statistics
Matches: 66, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
25 11 0.17
26 22 0.33
27 33 0.50
ACGTcount: A:0.33, C:0.08, G:0.05, T:0.55
Consensus pattern (27 bp):
ATATTATGTATATATTTTTTAATAACT
Found at i:125937486 original size:16 final size:16
Alignment explanation
Indices: 125937462--125937496 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
125937452 CTTTAGATTT
125937462 TTTAAAATTTTTAAAA
1 TTTAAAATTTTTAAAA
* *
125937478 TTTAGAATTTTTAGAA
1 TTTAAAATTTTTAAAA
125937494 TTT
1 TTT
125937497 TTTTTTATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (16 bp):
TTTAAAATTTTTAAAA
Found at i:125937511 original size:9 final size:9
Alignment explanation
Indices: 125937422--125937498 Score: 52
Period size: 9 Copynumber: 8.4 Consensus size: 9
125937412 AAAATAATTA
*
125937422 TTTTAGATT
1 TTTTAGAAT
125937431 ATTTTA-AATT
1 -TTTTAGAA-T
*
125937441 TTTTATATAT
1 TTTTAGA-AT
*
125937451 TCTTTAGATT
1 T-TTTAGAAT
*
125937461 TTTTAAAAT
1 TTTTAGAAT
125937470 TTTTA-AA-
1 TTTTAGAAT
*
125937477 ATTTAGAAT
1 TTTTAGAAT
125937486 TTTTAGAAT
1 TTTTAGAAT
125937495 TTTT
1 TTTT
125937499 TTTTATAATT
Statistics
Matches: 54, Mismatches: 7, Indels: 13
0.73 0.09 0.18
Matches are distributed among these distances:
7 4 0.07
8 4 0.07
9 29 0.54
10 11 0.20
11 6 0.11
ACGTcount: A:0.32, C:0.01, G:0.05, T:0.61
Consensus pattern (9 bp):
TTTTAGAAT
Found at i:125938893 original size:14 final size:14
Alignment explanation
Indices: 125938846--125938910 Score: 62
Period size: 14 Copynumber: 4.6 Consensus size: 14
125938836 CAATAAAATT
125938846 AATAATAA-AATAA
1 AATAATAACAATAA
*
125938859 AATTAT-ACAATATTCA
1 AATAATAACAATA---A
125938875 AATAATAACAATAA
1 AATAATAACAATAA
* *
125938889 AATAATAGCAATAT
1 AATAATAACAATAA
125938903 AATAATAA
1 AATAATAA
125938911 AATGGTAACA
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
12 1 0.02
13 9 0.21
14 20 0.48
16 6 0.14
17 6 0.14
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.28
Consensus pattern (14 bp):
AATAATAACAATAA
Found at i:125940400 original size:24 final size:24
Alignment explanation
Indices: 125940373--125940422 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
125940363 GTCAGGCTAG
125940373 ATAGTTTTATTTCGAAAAGCTTTT
1 ATAGTTTTATTTCGAAAAGCTTTT
125940397 ATAGTTTTATTTCGAAAAGCTTTT
1 ATAGTTTTATTTCGAAAAGCTTTT
125940421 AT
1 AT
125940423 CTAAGACCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.30, C:0.08, G:0.12, T:0.50
Consensus pattern (24 bp):
ATAGTTTTATTTCGAAAAGCTTTT
Found at i:125941535 original size:3 final size:3
Alignment explanation
Indices: 125941527--125941552 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
125941517 ATAACCAACA
125941527 CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CT
125941553 ATCAAGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:125948850 original size:40 final size:39
Alignment explanation
Indices: 125948771--125948875 Score: 101
Period size: 40 Copynumber: 2.6 Consensus size: 39
125948761 TCATCCAAAT
* *
125948771 TATTTAATATAATTAAAAATATTA-ATTATTTTGATAATTAA
1 TATTTAAAAT-ATT-AAAATATTATATTATTTTGAAAATT-A
125948812 TATATTACAAA-A-TAAAATATTATATT-TTTTGAAAAATTA
1 TAT-TTA-AAATATTAAAATATTATATTATTTTG-AAAATTA
125948851 TATTTAAAATATTTAAAATATTATA
1 TATTTAAAATA-TTAAAATATTATA
125948876 AATAAATAGA
Statistics
Matches: 55, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
37 3 0.05
38 4 0.07
39 18 0.33
40 21 0.38
41 4 0.07
42 3 0.05
43 2 0.04
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (39 bp):
TATTTAAAATATTAAAATATTATATTATTTTGAAAATTA
Found at i:125950046 original size:10 final size:10
Alignment explanation
Indices: 125950031--125950073 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
125950021 GTAGCTTTGT
125950031 TTAAATATAA
1 TTAAATATAA
125950041 TTAAATAATAA
1 TTAAAT-ATAA
*
125950052 TTAATTATAA
1 TTAAATATAA
*
125950062 ATAAATACTAA
1 TTAAATA-TAA
125950073 T
1 T
125950074 AACCTAAACT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
10 15 0.56
11 12 0.44
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (10 bp):
TTAAATATAA
Found at i:125950060 original size:21 final size:21
Alignment explanation
Indices: 125950031--125950073 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
125950021 GTAGCTTTGT
*
125950031 TTAAATATAATTAAATAATAA
1 TTAAATATAAATAAATAATAA
* *
125950052 TTAATTATAAATAAATACTAA
1 TTAAATATAAATAAATAATAA
125950073 T
1 T
125950074 AACCTAAACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
TTAAATATAAATAAATAATAA
Found at i:125953781 original size:25 final size:25
Alignment explanation
Indices: 125953747--125953796 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
125953737 GGCAGATCAA
*
125953747 TTGATGTGGGAGGTGGACAGCAAAG
1 TTGATGTGGGAGCTGGACAGCAAAG
125953772 TTGATGTGGGAGCTGGACAGCAAAG
1 TTGATGTGGGAGCTGGACAGCAAAG
125953797 GGAAATGTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.10, G:0.42, T:0.20
Consensus pattern (25 bp):
TTGATGTGGGAGCTGGACAGCAAAG
Found at i:125954883 original size:27 final size:28
Alignment explanation
Indices: 125954844--125954905 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
125954834 TACTAAGCAC
125954844 TATAAAGAAAGAAAAA-AAAGTAAAAAA
1 TATAAAGAAAGAAAAATAAAGTAAAAAA
* * *
125954871 TATAGAGAGAGAAAAATAATGTAAAATAA
1 TATAAAGAAAGAAAAATAAAGTAAAA-AA
*
125954900 AATAAA
1 TATAAA
125954906 ATAAGTTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
27 14 0.50
28 8 0.29
29 6 0.21
ACGTcount: A:0.71, C:0.00, G:0.13, T:0.16
Consensus pattern (28 bp):
TATAAAGAAAGAAAAATAAAGTAAAAAA
Found at i:125956487 original size:2 final size:2
Alignment explanation
Indices: 125956480--125956510 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
125956470 TAATGCTAAA
125956480 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
125956511 AAATAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:125956955 original size:2 final size:2
Alignment explanation
Indices: 125956950--125956979 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
125956940 TATATGAAAG
125956950 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
125956980 AGTATTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:125958380 original size:12 final size:12
Alignment explanation
Indices: 125958342--125958381 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
125958332 TTTGATTTGG
*
125958342 TTTGGGTTTAGT
1 TTTGGGTTTAAT
*
125958354 ATTGGGTTTAAT
1 TTTGGGTTTAAT
*
125958366 TTTGGGTTTATT
1 TTTGGGTTTAAT
125958378 TTTG
1 TTTG
125958382 TAAAAGGCCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (12 bp):
TTTGGGTTTAAT
Found at i:125959011 original size:81 final size:80
Alignment explanation
Indices: 125958916--125959393 Score: 475
Period size: 77 Copynumber: 6.0 Consensus size: 80
125958906 ACAGACATTA
* * ** *
125958916 AAAACAGAAATTGAAAATAACTCAGCACGTGAGCTAAGGCTCAACTCACTTCTCGCAATATGAGT
1 AAAACAG--ATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
*
125958981 TGATTTTTTTTAAAA-C
64 TGATTTTTTTGAAAAGC
* *
125958997 AAAACAGATTTTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGT
1 AAAACAGA--TTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
125959062 TGATTTTTTTGAAAAGC
64 TGATTTTTTTGAAAAGC
* *
125959079 -ATA-A-ATTGAAAATACCTCAGCATGTGGGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
** *
125959141 ATTTTTGGAAGAAACAGAAATTGA
66 ATTTTT--TTG----A-AAA--GC
* * *
125959165 AAAACGAAATTTTGAAAATACCTCAGTATGTG-GCCCGAGGCTCAACTCATCTCTCGCAATATGA
1 AAAAC-AGA--TTGAAAATACCTCAGCATGTGAG-CCGAGGCTCAACTCACCTCTCGCAATATGA
*
125959229 GTTGATTTTTTTGAAAAAC
62 GTTGATTTTTTTGAAAAGC
* ** *
125959248 -AGA-A-ATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTG
1 AAAACAGATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
125959308 A--TTTTTGAAAAGC
66 ATTTTTTTGAAAAGC
* *
125959321 -ATA-A-ATTGAAAATACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCAG-AATATGAGTT
1 AAAACAGATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTC-GCAATATGAGTT
125959382 GATTTTTTTGAA
65 GATTTTTTTGAA
125959394 GAAACAGAAA
Statistics
Matches: 340, Mismatches: 32, Indels: 54
0.80 0.08 0.13
Matches are distributed among these distances:
73 31 0.09
75 71 0.21
76 1 0.00
77 83 0.24
79 4 0.01
80 2 0.01
81 71 0.21
82 3 0.01
83 1 0.00
84 3 0.01
85 3 0.01
86 2 0.01
87 2 0.01
89 1 0.00
90 2 0.01
91 1 0.00
92 59 0.17
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (80 bp):
AAAACAGATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTGAAAAGC
Found at i:125959209 original size:169 final size:165
Alignment explanation
Indices: 125958915--125959411 Score: 544
Period size: 169 Copynumber: 3.1 Consensus size: 165
125958905 AACAGACATT
* ** *
125958915 AAAAACAGAAATTGAAAATAACTCAGCACGTGAG-CTAAGGCTCAACTCACTTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAG--CGTG-GCCCGAGGCTCAACTCACCTCTCGCAATATGA
** *
125958979 GTTGATTTTTTTTAAAAC---------AAAAC-AGATTTTGAAAATACCTCAGCATGTGACCCGA
63 GTTGA-TTTTTGAAAAACAGAAATTGAAAAACGAAATTTTGAAAATACCTCAGCATGTGACCCGA
*
125959034 GGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTG
127 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* * *
125959073 AAAAGCATAAATTGAAAATACCTCAGCATGTGGGCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC--GTGGCCCGAGGCTCAACTCACCTCTCGCAATATGAG
* *
125959138 TTGATTTTTGGAAGAAACAGAAATTGAAAAACGAAATTTTGAAAATACCTCAGTATGTGGCCCGA
64 TTGATTTTT-GAA-AAACAGAAATTGAAAAACGAAATTTTGAAAATACCTCAGCATGTGACCCGA
*
125959203 GGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTG
127 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* *
125959242 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
125959307 GATTTTTG--AAA-AG-CA-T--------AAA--TTGAAAATACCTCAGCATGTGAGCCGAGACT
66 GATTTTTGAAAAACAGAAATTGAAAAACGAAATTTTGAAAATACCTCAGCATGTGACCCGAGGCT
125959357 CAACTCACCTCTCAG-AATATGAGTTGATTTTTTTG
131 CAACTCACCTCTC-GCAATATGAGTTGATTTTTTTG
125959392 AAGAAACAGAAATTGAAAAT
1 AA-AAACAGAAATTGAAAAT
125959412 CGAAATTTTG
Statistics
Matches: 298, Mismatches: 24, Indels: 41
0.82 0.07 0.11
Matches are distributed among these distances:
150 61 0.20
151 18 0.06
152 3 0.01
156 1 0.00
157 6 0.02
158 59 0.20
159 4 0.01
160 1 0.00
161 1 0.00
162 2 0.01
163 3 0.01
166 1 0.00
167 42 0.14
168 5 0.02
169 91 0.31
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (165 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAACAGAAATTGAAAAACGAAATTTTGAAAATACCTCAGCATGTGACCCGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
Found at i:125959248 original size:92 final size:92
Alignment explanation
Indices: 125959084--125959259 Score: 300
Period size: 92 Copynumber: 1.9 Consensus size: 92
125959074 AAAGCATAAA
*
125959084 TTGAAAATACCTCAGCATGTGGGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGG
1 TTGAAAATACCTCAGCATGTGGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGG
125959149 AAGAAACAGAAATTGAAAAACGAAATT
66 AAGAAACAGAAATTGAAAAACGAAATT
* * *
125959176 TTGAAAATACCTCAGTATGTGGCCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTT
1 TTGAAAATACCTCAGCATGTGGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG
125959241 GAA-AAACAGAAATTGAAAA
65 GAAGAAACAGAAATTGAAAA
125959260 TACCTCAGCG
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
92 71 0.90
93 8 0.10
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.27
Consensus pattern (92 bp):
TTGAAAATACCTCAGCATGTGGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGG
AAGAAACAGAAATTGAAAAACGAAATT
Found at i:125959287 original size:75 final size:75
Alignment explanation
Indices: 125959161--125959556 Score: 334
Period size: 75 Copynumber: 5.0 Consensus size: 75
125959151 GAAACAGAAA
* * *
125959161 TTGAAAAAC-GAAATTTTGAAAATACCTCAGTATGTGGCCCGAGGCTCAACTCATCTCTCGCAAT
1 TTGAAAAACAGAAA--TTGAAAATACCTCAG--CGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
125959225 ATGAGTTGATTTTT
62 ATGAGTTGATTTTT
*
125959239 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
125959304 GTTGA--TTT
66 GTTGATTTTT
* * ** *
125959312 TTGAAAAGCATAAATTGAAAATACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCAG-AATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTC-GCAATA
125959376 TGAGTTGATTTTT
63 TGAGTTGATTTTT
*** *** *
125959389 TTGAAGAAACAGAAATTGAAAAT-CGAAATTTTGAAAATACCTCGGTATGTGGCCCAAGGCTCAC
1 TTGAA-AAACAGAAATTGAAAATACCTCAGCGTG----T-CC-C-G-A---GGCTCAA--CTCA-
*
125959453 CTCATCTCTCGCAATATGTGTTGATTTTT
51 --C--CTCTCGCAATATGAGTTGATTTTT
* ** *
125959482 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGACTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
125959547 GTTGATTTTT
66 GTTGATTTTT
125959557 GAAAACAAAA
Statistics
Matches: 258, Mismatches: 33, Indels: 57
0.74 0.09 0.16
Matches are distributed among these distances:
73 31 0.12
75 97 0.38
76 1 0.00
77 26 0.10
78 24 0.09
79 4 0.02
80 5 0.02
81 1 0.00
82 6 0.02
83 1 0.00
85 1 0.00
86 6 0.02
88 5 0.02
89 1 0.00
91 1 0.00
92 18 0.07
93 30 0.12
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:125959464 original size:243 final size:242
Alignment explanation
Indices: 125958878--125959561 Score: 963
Period size: 243 Copynumber: 2.8 Consensus size: 242
125958868 TCAACTCGTT
* * * *
125958878 TCTCGCAATATGAATTGAATCTTT--AAG-AACAGACATT-AAAAACAGAAA--TTGAAAATAAC
1 TCTCGCAATATGAGTTG-ATTTTTGGAAGAAACAGAAATTGAAAAAC-GAAATTTTGAAAATACC
* * * *
125958937 TCAGCACGTGAG-CTAAGGCTCAACTCA-CTTCTCGCAATATGAGTTGATTTTTTTTAAAACAAA
64 TCAGTATGTG-GCCCAAGGCTCAACTCATC-TCTCGCAATATGAGTTGA-TTTTTTT--GA-AAA
** *
125959000 ACAGATTTTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA
123 ACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA
* *
125959065 TTTTTTTGAAAAGCATAAATTGAAAATACCTCAGCATGTGGGCCGAGGCTCAACTCACC
186 --TTTTTGAAAAGCATAAATTGAAAATACCTCAGCATGTGAGCCGAGACTCAACTCACC
125959124 TCTCGCAATATGAGTTGATTTTTGGAAGAAACAGAAATTGAAAAACGAAATTTTGAAAATACCTC
1 TCTCGCAATATGAGTTGATTTTTGGAAGAAACAGAAATTGAAAAACGAAATTTTGAAAATACCTC
*
125959189 AGTATGTGGCCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAAT
66 AGTATGTGGCCCAAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAAT
125959254 TGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAA
131 TGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAA
125959319 GCATAAATTGAAAATACCTCAGCATGTGAGCCGAGACTCAACTCACC
196 GCATAAATTGAAAATACCTCAGCATGTGAGCCGAGACTCAACTCACC
* *
125959366 TCTCAG-AATATGAGTTGATTTTTTTGAAGAAACAGAAATTGAAAATCGAAATTTTGAAAATACC
1 TCTC-GCAATATGAGTTGA-TTTTTGGAAGAAACAGAAATTGAAAAACGAAATTTTGAAAATACC
* * *
125959430 TCGGTATGTGGCCCAAGGCTCACCTCATCTCTCGCAATATGTGTTGATTTTTTTGAAAAACAGAA
64 TCAGTATGTGGCCCAAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAA
* ** * *
125959495 ATTGAAAATACCTCAACGTGTCTTGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
129 ATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAA
125959560 AA
194 AA
125959562 CAAAAATAAA
Statistics
Matches: 403, Mismatches: 25, Indels: 23
0.89 0.06 0.05
Matches are distributed among these distances:
242 71 0.18
243 167 0.41
244 39 0.10
245 5 0.01
246 40 0.10
247 4 0.01
248 13 0.03
249 14 0.03
250 49 0.12
251 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (242 bp):
TCTCGCAATATGAGTTGATTTTTGGAAGAAACAGAAATTGAAAAACGAAATTTTGAAAATACCTC
AGTATGTGGCCCAAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAAT
TGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAA
GCATAAATTGAAAATACCTCAGCATGTGAGCCGAGACTCAACTCACC
Found at i:125959481 original size:93 final size:92
Alignment explanation
Indices: 125959326--125959503 Score: 252
Period size: 93 Copynumber: 1.9 Consensus size: 92
125959316 AAAGCATAAA
*
125959326 TTGAAAATACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCAGAATATGAGTTGATTTTTTT
1 TTGAAAATACCTCAGCATGTGAGCCAAGACTCAACTCACCTCTCAGAATATGAGTTGATTTTTTT
125959391 GAAGAAACAGAAATTGAAAATCGAAATT
66 GAA-AAACAGAAATTGAAAATCGAAATT
* * * * * *
125959419 TTGAAAATACCTCGGTATGTG-GCCCAAGGCTCACCTCATCTCTC-GCAATATGTGTTGATTTTT
1 TTGAAAATACCTCAGCATGTGAG-CCAAGACTCAACTCACCTCTCAG-AATATGAGTTGATTTTT
125959482 TTGAAAAACAGAAATTGAAAAT
64 TTGAAAAACAGAAATTGAAAAT
125959504 ACCTCAACGT
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
92 19 0.25
93 57 0.75
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (92 bp):
TTGAAAATACCTCAGCATGTGAGCCAAGACTCAACTCACCTCTCAGAATATGAGTTGATTTTTTT
GAAAAACAGAAATTGAAAATCGAAATT
Found at i:125961293 original size:24 final size:24
Alignment explanation
Indices: 125961265--125961325 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
125961255 AACCGAATTT
* * *
125961265 GCACACATAGTGCTA-ATTACACTC
1 GCACACATAGTGCCATAGTAAAC-C
125961289 GCACACATAGTGCCATAGTAAACC
1 GCACACATAGTGCCATAGTAAACC
125961313 GCACACATAGTGC
1 GCACACATAGTGC
125961326 ATTGGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.20
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAACC
Found at i:125969389 original size:24 final size:24
Alignment explanation
Indices: 125969361--125969421 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
125969351 AACCGAATTT
* * *
125969361 GCACACATAGTGCTA-ATTACACTC
1 GCACACATAGTGCCATAGTAAAC-C
125969385 GCACACATAGTGCCATAGTAAACC
1 GCACACATAGTGCCATAGTAAACC
125969409 GCACACATAGTGC
1 GCACACATAGTGC
125969422 ATTGGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.20
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAACC
Found at i:125983318 original size:25 final size:25
Alignment explanation
Indices: 125983280--125983438 Score: 82
Period size: 25 Copynumber: 6.5 Consensus size: 25
125983270 ATATAATAAT
* *
125983280 AAATATATACATAATATGGTATTAA
1 AAATATATACATAACATAGTATTAA
* *
125983305 AAATATATATATAACATAGTATT-T
1 AAATATATACATAACATAGTATTAA
** ** *
125983329 GTATACGTACATAAGAT-GATATATAA
1 AAATATATACATAACATAG-TAT-TAA
* * *
125983355 ATAATCTA-A-ATAATATAATATTGAA
1 A-AATATATACATAACATAGTATT-AA
*
125983380 AAATATATATAT-ACATA--A-TAA
1 AAATATATACATAACATAGTATTAA
*
125983401 AAATATATACTTAACATAGTATTAA
1 AAATATATACATAACATAGTATTAA
*
125983426 AATATGTATACAT
1 AA-ATATATACAT
125983439 GATATATATA
Statistics
Matches: 97, Mismatches: 24, Indels: 25
0.66 0.16 0.17
Matches are distributed among these distances:
21 12 0.12
22 6 0.06
23 2 0.02
24 21 0.22
25 43 0.44
26 11 0.11
27 2 0.02
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.36
Consensus pattern (25 bp):
AAATATATACATAACATAGTATTAA
Found at i:125983568 original size:3 final size:3
Alignment explanation
Indices: 125983562--125983655 Score: 59
Period size: 3 Copynumber: 31.0 Consensus size: 3
125983552 AGAAATATAC
* * *
125983562 TAA TAA TGA TAA TAA TAA TAA TAA TAA TAG TAA TAA T-A TAAA TAT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA
* * * * *
125983607 TATA TACA TAA AAA T-G TAA TAA TGA CAA TAAA TAA -CA TAA TAA TAA
1 TA-A TA-A TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
125983653 TAA
1 TAA
125983656 ATATAAAAAA
Statistics
Matches: 68, Mismatches: 17, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
2 4 0.06
3 54 0.79
4 10 0.15
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:125984280 original size:22 final size:23
Alignment explanation
Indices: 125984237--125984282 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
125984227 GTATTTTTTG
* **
125984237 TTCTTTTTTTTTTATTTTATATA
1 TTCTTTATTTTTTATTAAATATA
125984260 TTCTTTATTTTTT-TTAAATATA
1 TTCTTTATTTTTTATTAAATATA
125984282 T
1 T
125984283 ATACGCGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (23 bp):
TTCTTTATTTTTTATTAAATATA
Found at i:125984895 original size:12 final size:12
Alignment explanation
Indices: 125984857--125984896 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
125984847 TTTGATTTGG
*
125984857 TTTGGGTTTAGT
1 TTTGGGTTTAAT
*
125984869 ATTGGGTTTAAT
1 TTTGGGTTTAAT
*
125984881 TTTGGGTTTATT
1 TTTGGGTTTAAT
125984893 TTTG
1 TTTG
125984897 TAAAAGGCCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (12 bp):
TTTGGGTTTAAT
Found at i:125989811 original size:26 final size:26
Alignment explanation
Indices: 125989780--125989887 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
125989770 TGAAATTCCC
125989780 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
125989806 ATCATGGAACATTTACCT-AACCTATT
1 ATCATGGAACATTTACCTAAACC-ATT
* *
125989832 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
125989858 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
125989884 ATCA
1 ATCA
125989888 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
25 4 0.05
26 69 0.91
27 3 0.04
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:125996483 original size:26 final size:26
Alignment explanation
Indices: 125996375--125996482 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
125996365 TGAAATTCCC
*
125996375 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
125996401 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
** *
125996427 ATCATGGAGTATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
125996453 ATCAAGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
125996479 ATCA
1 ATCA
125996483 ATTTATATCA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:125996902 original size:54 final size:54
Alignment explanation
Indices: 125996816--125997269 Score: 495
Period size: 54 Copynumber: 8.6 Consensus size: 54
125996806 GGCGTTACAA
* * * * *
125996816 GCCAGGACCAAAAAAAAAAATTTAAATCCTAAGTCTGGTGTCGGCCATTGACAA
1 GCCAGAACCAAAAAAAAAAATTTAAATACTGAGTCTGGTGCCGGCCATTGACAG
* * *
125996870 GCCAGAACCAAAAAAAAAAATTAAAATACTAAGTCTGGTGCCGACCATTGACAG
1 GCCAGAACCAAAAAAAAAAATTTAAATACTGAGTCTGGTGCCGGCCATTGACAG
* * * **
125996924 GCTA-ATA-C-AAAAAAAAAA-TTAAATACT-AGTTTGCTGCAAGCCATTGACAG
1 GCCAGA-ACCAAAAAAAAAAATTTAAATACTGAGTCTGGTGCCGGCCATTGACAG
*
125996974 GCCAGCACC-AAAAAAAAAATTTAAATACTGAGTCTGGTGCCGGCCATTGACAG
1 GCCAGAACCAAAAAAAAAAATTTAAATACTGAGTCTGGTGCCGGCCATTGACAG
* * * *
125997027 GCCAGGACC--AAAAAAAAATTTAAATAATGAGTTTGGTGTCGGCCATTGACAG
1 GCCAGAACCAAAAAAAAAAATTTAAATACTGAGTCTGGTGCCGGCCATTGACAG
* * *
125997079 GCCAGAACCAAAAAAAAAAATTTAAGTACTGAGTATGGTGCTGGCCATTGACAG
1 GCCAGAACCAAAAAAAAAAATTTAAATACTGAGTCTGGTGCCGGCCATTGACAG
* * * * *
125997133 GCTA-ATACCAAAAAAAAAAAATTAAATACT-AGTTTGTTGTCGGCCATTGACAG
1 GCCAGA-ACCAAAAAAAAAAATTTAAATACTGAGTCTGGTGCCGGCCATTGACAG
* * * *
125997186 GACAGCACC--AAAAAAAATTTTAAAAATACTGAGTCTGATGCCGGCCATTGACAG
1 GCCAGAACCAAAAAAAAAAATTT--AAATACTGAGTCTGGTGCCGGCCATTGACAG
*
125997240 GCCAGCACC--AAAAAAAAATTTAAATACTGA
1 GCCAGAACCAAAAAAAAAAATTTAAATACTGA
125997270 TTTTTTGTAT
Statistics
Matches: 342, Mismatches: 46, Indels: 26
0.83 0.11 0.06
Matches are distributed among these distances:
50 22 0.06
51 29 0.08
52 76 0.22
53 61 0.18
54 154 0.45
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.21
Consensus pattern (54 bp):
GCCAGAACCAAAAAAAAAAATTTAAATACTGAGTCTGGTGCCGGCCATTGACAG
Found at i:125997201 original size:209 final size:209
Alignment explanation
Indices: 125996816--125997265 Score: 661
Period size: 209 Copynumber: 2.1 Consensus size: 209
125996806 GGCGTTACAA
**
125996816 GCCAGGACCAAAAAAAAAAATTTAAATCCTAAGTCTGGTGTCGGCCATTGACAAGCCAGAACCAA
1 GCCAGGACC--AAAAAAAAATTTAAATAATAAGTCTGGTGTCGGCCATTGACAAGCCAGAACCAA
*
125996881 AAAAAAAAATTAAAATACTAAGTCTGGTGCCGACCATTGACAGGCTAATACAAAAAAAAAATTAA
64 AAAAAAAAATTAAAATACTAAGTATGGTGCCGACCATTGACAGGCTAATACAAAAAAAAAATTAA
* *
125996946 ATACTAGTTTGCTGCAAGCCATTGACAGGCCAGCACCAAAAAAAAAATTT-AAATACTGAGTCTG
129 ATACTAGTTTGCTGCAAGCCATTGACAGGACAGCACC-AAAAAAAATTTTAAAATACTGAGTCTG
*
125997010 GTGCCGGCCATTGACAG
193 ATGCCGGCCATTGACAG
* * *
125997027 GCCAGGACCAAAAAAAAATTTAAATAATGAGTTTGGTGTCGGCCATTGACAGGCCAGAACCAAAA
1 GCCAGGACCAAAAAAAAATTTAAATAATAAGTCTGGTGTCGGCCATTGACAAGCCAGAACCAAAA
* * * * *
125997092 AAAAAAATTTAAGTACTGAGTATGGTGCTGGCCATTGACAGGCTAATACCAAAAAAAAAAAATTA
66 AAAAAAATTAAAATACTAAGTATGGTGCCGACCATTGACAGGCTAATA-C--AAAAAAAAAATTA
* *
125997157 AATACTAGTTTGTTGTC-GGCCATTGACAGGACAGCACCAAAAAAAATTTTAAAAATACTGAGTC
128 AATACTAGTTTGCTG-CAAGCCATTGACAGGACAGCACCAAAAAAAATTTT-AAAATACTGAGTC
125997221 TGATGCCGGCCATTGACAG
191 TGATGCCGGCCATTGACAG
*
125997240 GCCAGCACCAAAAAAAAATTTAAATA
1 GCCAGGACCAAAAAAAAATTTAAATA
125997266 CTGATTTTTT
Statistics
Matches: 216, Mismatches: 17, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
209 93 0.43
210 1 0.00
211 20 0.09
212 46 0.21
213 56 0.26
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21
Consensus pattern (209 bp):
GCCAGGACCAAAAAAAAATTTAAATAATAAGTCTGGTGTCGGCCATTGACAAGCCAGAACCAAAA
AAAAAAATTAAAATACTAAGTATGGTGCCGACCATTGACAGGCTAATACAAAAAAAAAATTAAAT
ACTAGTTTGCTGCAAGCCATTGACAGGACAGCACCAAAAAAAATTTTAAAATACTGAGTCTGATG
CCGGCCATTGACAG
Found at i:126002363 original size:13 final size:13
Alignment explanation
Indices: 126002345--126002413 Score: 50
Period size: 13 Copynumber: 5.1 Consensus size: 13
126002335 TAACCCTATA
126002345 TATTTTTTTATTT
1 TATTTTTTTATTT
* *
126002358 TATTTTATTATTA
1 TATTTTTTTATTT
* *
126002371 TATTATATATATATT
1 TATT-TTTTTAT-TT
*
126002386 T-TTTTTATATTGT
1 TATTTTTTTATT-T
126002399 TATTTGTTTTATTT
1 TATTT-TTTTATTT
126002413 T
1 T
126002414 TAACCTTATT
Statistics
Matches: 43, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
12 1 0.02
13 23 0.53
14 11 0.26
15 8 0.19
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (13 bp):
TATTTTTTTATTT
Found at i:126002462 original size:24 final size:24
Alignment explanation
Indices: 126002425--126002508 Score: 79
Period size: 24 Copynumber: 3.6 Consensus size: 24
126002415 AACCTTATTT
126002425 TTATATTATATATTATATTTATTTTA
1 TTATA-TAT-TATTATATTTATTTTA
* *
126002451 TTATATATTATTAT-GTCA-TTT-
1 TTATATATTATTATATTTATTTTA
*
126002472 TT-TATATTATTATATAT-TTTTA
1 TTATATATTATTATATTTATTTTA
126002494 TCTATATATTATTAT
1 T-TATATATTATTAT
126002509 CATTAAAGGT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
20 11 0.23
21 5 0.10
22 4 0.08
23 3 0.06
24 17 0.35
25 3 0.06
26 5 0.10
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.64
Consensus pattern (24 bp):
TTATATATTATTATATTTATTTTA
Found at i:126002508 original size:14 final size:14
Alignment explanation
Indices: 126002476--126002509 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
126002466 TCATTTTTTA
126002476 TATTAT-TATATAT
1 TATTATCTATATAT
*
126002489 TTTTATCTATATAT
1 TATTATCTATATAT
126002503 TATTATC
1 TATTATC
126002510 ATTAAAGGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (14 bp):
TATTATCTATATAT
Found at i:126006350 original size:40 final size:40
Alignment explanation
Indices: 126006293--126006540 Score: 250
Period size: 40 Copynumber: 6.2 Consensus size: 40
126006283 TGAATGATAC
* *
126006293 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
126006333 CCGGGCTAAGACTCGAAGGCATTCGTGCGAGTTG-TTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* *
126006373 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
126006413 CCGGGCTAAGACCCGAAGGCATTCGTGCGATTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGATTATAT
* * * * ** *
126006453 CCGGGCTAAGAACCTAAGGCATTTGTGCAAGTTAACAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * * *
126006493 CTGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
126006533 CC-GGCTAA
1 CCGGGCTAA
126006541 ATTCCGAAGA
Statistics
Matches: 164, Mismatches: 40, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
39 8 0.05
40 152 0.93
41 4 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:126006422 original size:80 final size:80
Alignment explanation
Indices: 126006289--126006513 Score: 324
Period size: 80 Copynumber: 2.8 Consensus size: 80
126006279 CATTTGAATG
*
126006289 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACTCGAAGGCA
1 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
126006354 TTCGTGCGAGTTGTT
66 TTCGTGCGAGTTGTT
126006369 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
*
126006434 TTCGTGCGATTTGTT
66 TTCGTGCGAGTTGTT
* ** * * * * ** * * *
126006449 ATATCCGGGCTAAGAACCTAAGGCATTTGTGCAAGTTAACAAATCTGGGTTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
126006514 ATTGTGCTTG
Statistics
Matches: 131, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 131 1.00
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTTGTT
Found at i:126006508 original size:120 final size:120
Alignment explanation
Indices: 126006293--126006540 Score: 277
Period size: 120 Copynumber: 2.1 Consensus size: 120
126006283 TGAATGATAC
* * *
126006293 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACTCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACTCGAAGGCATTCG
* *** * * *
126006358 TGCGAGTTGTTATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
66 TGCAAGTTAACAAACCCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
* * *
126006413 CCGGGCTAAGACCCGAAGGCATTCGTGCGATTTG-TTATATCCGGGCTAAGAAC-CTAAGGCATT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGA-GTGATTATATCCGGGCTAAG-ACTCGAAGGCATT
* * * * * * *
126006476 TGTGCAAGTTAACAAATCTGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
64 CGTGCAAGTTAACAAACCCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
126006533 CC-GGCTAA
1 CCGGGCTAA
126006541 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
119 6 0.06
120 96 0.91
121 4 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (120 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACTCGAAGGCATTCG
TGCAAGTTAACAAACCCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
Found at i:126014549 original size:40 final size:40
Alignment explanation
Indices: 126014494--126014738 Score: 302
Period size: 40 Copynumber: 6.2 Consensus size: 40
126014484 TGAATGATAC
* *
126014494 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
126014534 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTG-TTATA-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
126014572 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
126014612 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * *
126014652 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTA-CAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
126014691 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
126014731 CC-GGCTAA
1 CCGGGCTAA
126014739 ATTCCGAAGA
Statistics
Matches: 174, Mismatches: 26, Indels: 11
0.82 0.12 0.05
Matches are distributed among these distances:
38 29 0.17
39 47 0.27
40 96 0.55
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:126014623 original size:78 final size:80
Alignment explanation
Indices: 126014494--126014747 Score: 356
Period size: 78 Copynumber: 3.2 Consensus size: 80
126014484 TGAATGATAC
126014494 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
126014559 TGCGAG-TGTTATA-
66 TGCGAGTTGTTATAT
126014572 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
126014637 TGCGAGTTGTTATAT
66 TGCGAGTTGTTATAT
* * * * * * *
126014652 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTA-CAAATCCGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
** *
126014715 GTGCTTGTGGTTATAT
65 GTGCGAGTTGTTATAT
* *
126014731 CC-GGCTAAATTCCGAAG
1 CCGGGCTAAGTCCCGAAG
126014748 AAACTCGGTT
Statistics
Matches: 160, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
78 83 0.52
79 44 0.28
80 33 0.21
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTTGTTATAT
Found at i:126014737 original size:118 final size:118
Alignment explanation
Indices: 126014494--126014738 Score: 316
Period size: 118 Copynumber: 2.1 Consensus size: 118
126014484 TGAATGATAC
* * *
126014494 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
* * * * *
126014559 TGCGAGTGTTATACCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
66 TGCAAGTGTCAAACCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
* *
126014612 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTC
* * * *
126014676 GTGCAAGT-TACAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
65 GTGCAAGTGT-CAAA-CCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
126014731 CC-GGCTAA
1 CCGGGCTAA
126014739 ATTCCGAAGA
Statistics
Matches: 110, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
117 1 0.01
118 71 0.65
119 38 0.35
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (118 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTGTCAAACCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
Found at i:126017367 original size:16 final size:16
Alignment explanation
Indices: 126017342--126017372 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
126017332 TAAATCGAGG
*
126017342 ATAAGCAAATAAACAT
1 ATAAGAAAATAAACAT
126017358 ATAAGAAAATAAACA
1 ATAAGAAAATAAACA
126017373 AACTTAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.10, G:0.06, T:0.16
Consensus pattern (16 bp):
ATAAGAAAATAAACAT
Found at i:126017884 original size:17 final size:17
Alignment explanation
Indices: 126017862--126017897 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
126017852 GTAGTACAAA
126017862 AAAGAAATAATGATAAT
1 AAAGAAATAATGATAAT
126017879 AAAGAAATAATGATAAT
1 AAAGAAATAATGATAAT
126017896 AA
1 AA
126017898 TAATAGGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (17 bp):
AAAGAAATAATGATAAT
Found at i:126017897 original size:3 final size:3
Alignment explanation
Indices: 126017867--126018116 Score: 57
Period size: 3 Copynumber: 81.3 Consensus size: 3
126017857 ACAAAAAAGA
* * ** *
126017867 AAT AAT GAT AAT AA- AGA- AAT AAT GAT AAT AAT AAT AGG AGT AAT
1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
126017911 AAT AAT AAT -AT AAT GAT GAT AAAC AAT AAT AA- AAGG AAC AAA AAT
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AA-T AAT AAT AAT
* * * * * *
126017956 AAT AGT AAT AAT AA- AGAT ATTT AAT AAT AGT AAT AAT AAC GAT GAT
1 AAT AAT AAT AAT AAT A-AT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
126018002 -AT AAAT AAT AAT ATAT ACAT AAA AAT AAT AGTT AGA- AAT AAA AAT
1 AAT -AAT AAT AAT A-AT A-AT AAT AAT AAT A-AT A-AT AAT AAT AAT
* * * * * * ** *
126018047 AAT GGAAGT AGT AAT AAC AAT AGT AAT AGT AAT AGA- GAT AAC AGC AAG
1 AAT --AA-T AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
126018095 AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT A
126018117 TACTTAATTC
Statistics
Matches: 182, Mismatches: 47, Indels: 36
0.69 0.18 0.14
Matches are distributed among these distances:
2 11 0.06
3 149 0.82
4 19 0.10
5 2 0.01
6 1 0.01
ACGTcount: A:0.60, C:0.03, G:0.11, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:126035891 original size:15 final size:15
Alignment explanation
Indices: 126035854--126035896 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
126035844 GTTCCAGAAG
*
126035854 CACCCCAACCACTGC
1 CACCCCAGCCACTGC
126035869 CA--CC-GCCACTGC
1 CACCCCAGCCACTGC
126035881 CACCCCAGCCACTGC
1 CACCCCAGCCACTGC
126035896 C
1 C
126035897 GCTGCCATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
12 9 0.38
13 2 0.08
14 2 0.08
15 11 0.46
ACGTcount: A:0.21, C:0.60, G:0.12, T:0.07
Consensus pattern (15 bp):
CACCCCAGCCACTGC
Found at i:126035955 original size:78 final size:78
Alignment explanation
Indices: 126035801--126035947 Score: 258
Period size: 78 Copynumber: 1.9 Consensus size: 78
126035791 CTCCACTACC
126035801 GCCACCCCAACCACTGCCGCTGCCATTGCCACCTCCACTTTCAGTTCCAGAAGCACCCCAACCAC
1 GCCACCCCAACCACTGCCGCTGCCATTGCCACCTCCACTTTCAGTTCCAGAAGCACCCCAACCAC
126035866 TGCCACCGCCACT
66 TGCCACCGCCACT
* ** *
126035879 GCCACCCCAGCCACTGCCGCTGCCATTGCCATTTCCACTTTCAGTTCCAGAAGCACCCCAGCCAC
1 GCCACCCCAACCACTGCCGCTGCCATTGCCACCTCCACTTTCAGTTCCAGAAGCACCCCAACCAC
126035944 TGCC
66 TGCC
126035948 GCTGCCACCT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 65 1.00
ACGTcount: A:0.20, C:0.48, G:0.14, T:0.17
Consensus pattern (78 bp):
GCCACCCCAACCACTGCCGCTGCCATTGCCACCTCCACTTTCAGTTCCAGAAGCACCCCAACCAC
TGCCACCGCCACT
Found at i:126035962 original size:45 final size:47
Alignment explanation
Indices: 126035881--126035988 Score: 157
Period size: 45 Copynumber: 2.3 Consensus size: 47
126035871 CCGCCACTGC
126035881 CACCCCAGCCACTGCCGCTGCCATTGCCATTTCCACTTTCAGTTCCAGAAG
1 CACCCCAGCCACTGCCGCTGCCA-T-CC--TTCCACTTTCAGTTCCAGAAG
126035932 CACCCCAGCCACTGCCGCTGCCA-CC-TCCACTTTCAGTTCCAGAAG
1 CACCCCAGCCACTGCCGCTGCCATCCTTCCACTTTCAGTTCCAGAAG
*
126035977 CACCCCAACCAC
1 CACCCCAGCCAC
126035989 CAGGGAAAGC
Statistics
Matches: 56, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
45 31 0.55
48 2 0.04
51 23 0.41
ACGTcount: A:0.21, C:0.46, G:0.14, T:0.19
Consensus pattern (47 bp):
CACCCCAGCCACTGCCGCTGCCATCCTTCCACTTTCAGTTCCAGAAG
Found at i:126046843 original size:26 final size:26
Alignment explanation
Indices: 126046814--126046865 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
126046804 AAAAAATAAA
126046814 AAATTATCA-TAAACATAAATATTATT
1 AAATTATCAGT-AACATAAATATTATT
*
126046840 AAATTATCAGTAAGATAAATATTATT
1 AAATTATCAGTAACATAAATATTATT
126046866 TTTCTTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (26 bp):
AAATTATCAGTAACATAAATATTATT
Found at i:126047843 original size:58 final size:57
Alignment explanation
Indices: 126047749--126047865 Score: 198
Period size: 58 Copynumber: 2.0 Consensus size: 57
126047739 TTTAAATTGG
* *
126047749 AAAAACAATACATATAATAAATTTGTCGCGTAAATCATCTAATGCAGTATATATATTT
1 AAAAACAACACATATAATAAATTTGTCACGTAAATCATC-AATGCAGTATATATATTT
*
126047807 AAAAACAACACATATAATAAATTTGTCACGTCAATCATCAATGCAGTATATATATTT
1 AAAAACAACACATATAATAAATTTGTCACGTAAATCATCAATGCAGTATATATATTT
126047864 AA
1 AA
126047866 CAATCTCATT
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
57 20 0.36
58 36 0.64
ACGTcount: A:0.46, C:0.14, G:0.08, T:0.32
Consensus pattern (57 bp):
AAAAACAACACATATAATAAATTTGTCACGTAAATCATCAATGCAGTATATATATTT
Found at i:126061290 original size:12 final size:12
Alignment explanation
Indices: 126061273--126061306 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
126061263 TGGCCCGCCC
126061273 ATATTAATTTTT
1 ATATTAATTTTT
*
126061285 ATATTATTTTTT
1 ATATTAATTTTT
126061297 ATA-TAATTTT
1 ATATTAATTTT
126061307 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:126061519 original size:11 final size:11
Alignment explanation
Indices: 126061505--126061552 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
126061495 ATATCCAAAC
*
126061505 AATAATAACAA
1 AATAATAGCAA
*
126061516 AATAGTAGCAA
1 AATAATAGCAA
* *
126061527 CATAATAGTAA
1 AATAATAGCAA
*
126061538 AATAGTAGCAA
1 AATAATAGCAA
126061549 AATA
1 AATA
126061553 GGGAGAAAAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.60, C:0.08, G:0.10, T:0.21
Consensus pattern (11 bp):
AATAATAGCAA
Found at i:126061531 original size:22 final size:22
Alignment explanation
Indices: 126061506--126061548 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
126061496 TATCCAAACA
126061506 ATAATAACAAAATAGTAGCAAC
1 ATAATAACAAAATAGTAGCAAC
**
126061528 ATAATAGTAAAATAGTAGCAA
1 ATAATAACAAAATAGTAGCAA
126061549 AATAGGGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (22 bp):
ATAATAACAAAATAGTAGCAAC
Found at i:126061553 original size:11 final size:11
Alignment explanation
Indices: 126061513--126061553 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
126061503 ACAATAATAA
126061513 CAAAATAGTAG
1 CAAAATAGTAG
* *
126061524 CAACATAATAG
1 CAAAATAGTAG
*
126061535 TAAAATAGTAG
1 CAAAATAGTAG
126061546 CAAAATAG
1 CAAAATAG
126061554 GGAGAAAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:126067719 original size:12 final size:12
Alignment explanation
Indices: 126067702--126067739 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
126067692 AATCCATTAT
126067702 TGTATGCATGTA
1 TGTATGCATGTA
*
126067714 TGTATGCACGTA
1 TGTATGCATGTA
*
126067726 TGTATGTATGTA
1 TGTATGCATGTA
126067738 TG
1 TG
126067740 GGGTCAAGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.24, C:0.08, G:0.26, T:0.42
Consensus pattern (12 bp):
TGTATGCATGTA
Found at i:126072972 original size:36 final size:36
Alignment explanation
Indices: 126072932--126073010 Score: 158
Period size: 36 Copynumber: 2.2 Consensus size: 36
126072922 TATGTTTTGT
126072932 ATGAAGCTAATCGCAACAACAACTTTGTTTACGAGA
1 ATGAAGCTAATCGCAACAACAACTTTGTTTACGAGA
126072968 ATGAAGCTAATCGCAACAACAACTTTGTTTACGAGA
1 ATGAAGCTAATCGCAACAACAACTTTGTTTACGAGA
126073004 ATGAAGC
1 ATGAAGC
126073011 GCAGTTTCAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (36 bp):
ATGAAGCTAATCGCAACAACAACTTTGTTTACGAGA
Found at i:126082342 original size:7 final size:7
Alignment explanation
Indices: 126082330--126082354 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
126082320 AAATAACAAC
126082330 TAAATTT
1 TAAATTT
126082337 TAAATTT
1 TAAATTT
126082344 TAAATTT
1 TAAATTT
126082351 TAAA
1 TAAA
126082355 AATAAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (7 bp):
TAAATTT
Found at i:126091931 original size:18 final size:18
Alignment explanation
Indices: 126091880--126091963 Score: 116
Period size: 18 Copynumber: 4.7 Consensus size: 18
126091870 GAAACATGGA
** *
126091880 AGGAGAAATAATGGGAGA
1 AGGAGAAATCCTGGGAGG
126091898 AGGAGAAATCCTGGGAGG
1 AGGAGAAATCCTGGGAGG
126091916 AGGAGAAATGCC-GGGAGG
1 AGGAGAAAT-CCTGGGAGG
*
126091934 AGGAGAAGTCCTGGGAGG
1 AGGAGAAATCCTGGGAGG
126091952 AGGAGAAATCCT
1 AGGAGAAATCCT
126091964 AGAACGAACA
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
17 2 0.03
18 55 0.93
19 2 0.03
ACGTcount: A:0.37, C:0.10, G:0.43, T:0.11
Consensus pattern (18 bp):
AGGAGAAATCCTGGGAGG
Found at i:126093935 original size:43 final size:43
Alignment explanation
Indices: 126093877--126093964 Score: 142
Period size: 43 Copynumber: 2.0 Consensus size: 43
126093867 ACTTGCCTGT
* *
126093877 TTCTCGTATGGATTAAAA-TGATATTACTTCGACTCTTCATCTG
1 TTCTCATATGGATTAAAACT-ATATTACTCCGACTCTTCATCTG
126093920 TTCTCATATGGATTAAAACTATATTACTCCGACTCTTCATCTG
1 TTCTCATATGGATTAAAACTATATTACTCCGACTCTTCATCTG
126093963 TT
1 TT
126093965 TTTGAAGGAT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
43 41 0.98
44 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.11, T:0.42
Consensus pattern (43 bp):
TTCTCATATGGATTAAAACTATATTACTCCGACTCTTCATCTG
Found at i:126095307 original size:13 final size:13
Alignment explanation
Indices: 126095288--126095330 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
126095278 CTAAATAATC
126095288 CTAAATATTATTA
1 CTAAATATTATTA
*
126095301 TTAAATA--ATT-
1 CTAAATATTATTA
126095311 CTAAATATTATTA
1 CTAAATATTATTA
126095324 CTAAATA
1 CTAAATA
126095331 ATTCAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 6 0.24
11 3 0.12
12 3 0.12
13 13 0.52
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (13 bp):
CTAAATATTATTA
Found at i:126095333 original size:23 final size:23
Alignment explanation
Indices: 126095266--126095339 Score: 103
Period size: 23 Copynumber: 3.2 Consensus size: 23
126095256 AGATTTTTCT
* * *
126095266 TAAATAGTATCACTAAATAATCC
1 TAAATATTATTACTAAATAATTC
*
126095289 TAAATATTATTATTAAATAATTC
1 TAAATATTATTACTAAATAATTC
126095312 TAAATATTATTACTAAATAATTC
1 TAAATATTATTACTAAATAATTC
*
126095335 AAAAT
1 TAAAT
126095340 TTAAAATTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.50, C:0.09, G:0.01, T:0.39
Consensus pattern (23 bp):
TAAATATTATTACTAAATAATTC
Found at i:126101408 original size:17 final size:18
Alignment explanation
Indices: 126101366--126101414 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
126101356 AGTTGAAAAG
126101366 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
126101385 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
126101402 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
126101415 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:126102302 original size:40 final size:40
Alignment explanation
Indices: 126102236--126102386 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
126102226 AAATTGAATG
* * *
126102236 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
126102275 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
126102315 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
126102355 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
126102387 ACTTGATTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:126102400 original size:40 final size:40
Alignment explanation
Indices: 126102272--126102402 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
126102262 TATGCTGGAA
* * * *
126102272 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
** * *
126102312 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
126102352 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
126102392 ATTATATCCGG
1 ATTATATCCGG
126102403 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 70 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:126109414 original size:17 final size:18
Alignment explanation
Indices: 126109372--126109420 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
126109362 AGTTGAAAAG
126109372 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
126109391 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
126109408 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
126109421 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:126110302 original size:40 final size:40
Alignment explanation
Indices: 126110236--126110402 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
126110226 AAATTGAATG
* * *
126110236 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
126110275 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
126110315 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
126110355 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
126110395 ATATCCGG
1 ATATCCGG
126110403 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:126112402 original size:13 final size:13
Alignment explanation
Indices: 126112384--126112426 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
126112374 TAGATTTTTC
126112384 CTAAATATTATCA
1 CTAAATATTATCA
*
126112397 CTAAATA--GTC-
1 CTAAATATTATCA
126112407 CTAAATATTATCA
1 CTAAATATTATCA
126112420 CTAAATA
1 CTAAATA
126112427 ATTCTAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 7 0.28
11 2 0.08
12 2 0.08
13 14 0.56
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:126112408 original size:23 final size:23
Alignment explanation
Indices: 126112382--126112458 Score: 100
Period size: 23 Copynumber: 3.3 Consensus size: 23
126112372 GTTAGATTTT
*
126112382 TCCTAAATATTATCACTAAATAG
1 TCCTAAATATTATCACTAAATAA
126112405 TCCTAAATATTATCACTAAATAA
1 TCCTAAATATTATCACTAAATAA
* * * *
126112428 TTCTAAATATCATTACCAAATAA
1 TCCTAAATATTATCACTAAATAA
*
126112451 TTCTAAAT
1 TCCTAAAT
126112459 TTAAAAAATT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.45, C:0.17, G:0.01, T:0.36
Consensus pattern (23 bp):
TCCTAAATATTATCACTAAATAA
Found at i:126121715 original size:12 final size:11
Alignment explanation
Indices: 126121682--126121711 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
126121672 AATGATATTT
126121682 AAATATATATA
1 AAATATATATA
126121693 ATAATATATATA
1 A-AATATATATA
126121705 AAATATA
1 AAATATA
126121712 ATATTAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
AAATATATATA
Found at i:126121928 original size:13 final size:14
Alignment explanation
Indices: 126121910--126121940 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
126121900 ATGTACGAAT
126121910 ATATACATATA-TA
1 ATATACATATATTA
126121923 ATATACATATATTA
1 ATATACATATATTA
126121937 ATAT
1 ATAT
126121941 TAATAATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:126126763 original size:16 final size:17
Alignment explanation
Indices: 126126729--126126780 Score: 79
Period size: 17 Copynumber: 3.1 Consensus size: 17
126126719 TGTGATCCGA
*
126126729 TTGAAAA-ACGAGAATT
1 TTGAAAACACGAAAATT
*
126126745 TTTAAAACACGAAAATT
1 TTGAAAACACGAAAATT
126126762 TTGAAAACACGAAAATT
1 TTGAAAACACGAAAATT
126126779 TT
1 TT
126126781 TGGGATCCGA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
16 6 0.19
17 26 0.81
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.29
Consensus pattern (17 bp):
TTGAAAACACGAAAATT
Found at i:126126817 original size:18 final size:18
Alignment explanation
Indices: 126126796--126126830 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
126126786 TCCGAATTTT
*
126126796 TTTTTAAAACACGAAAAA
1 TTTTGAAAACACGAAAAA
*
126126814 TTTTGAAAACGCGAAAA
1 TTTTGAAAACACGAAAA
126126831 GTTTACAACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.11, G:0.11, T:0.26
Consensus pattern (18 bp):
TTTTGAAAACACGAAAAA
Found at i:126127352 original size:26 final size:27
Alignment explanation
Indices: 126127309--126127362 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
126127299 TATGTATACC
*
126127309 AAATAATACATAATAATACT-AAAATA
1 AAATAATACATAACAATACTGAAAATA
*
126127335 AAATAATA-AGTAACAATAGTGAAAATA
1 AAATAATACA-TAACAATACTGAAAATA
126127362 A
1 A
126127363 TAAGCATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.04
26 16 0.67
27 7 0.29
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (27 bp):
AAATAATACATAACAATACTGAAAATA
Found at i:126127397 original size:18 final size:17
Alignment explanation
Indices: 126127371--126127424 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
126127361 AATAAGCATA
126127371 ATAATAAATATAATGATAT
1 ATAA-AAATATAAT-ATAT
*
126127390 ATAAAAATAATACTATAT
1 ATAAAAAT-ATAATATAT
*
126127408 ATAAAAGTAT-ATATAT
1 ATAAAAATATAATATAT
126127424 A
1 A
126127425 CGTACAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 6 0.19
17 2 0.06
18 15 0.48
19 8 0.26
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (17 bp):
ATAAAAATATAATATAT
Found at i:126127852 original size:29 final size:30
Alignment explanation
Indices: 126127820--126127876 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
126127810 ATTAGCAGCG
* *
126127820 TGAAAATGATAA-AATAACAAATATTTAAA
1 TGAAAATAATAAGAACAACAAATATTTAAA
*
126127849 TGAAGATAATAAGAACAACAAATATTTA
1 TGAAAATAATAAGAACAACAAATATTTA
126127877 GAAAGTAAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.60, C:0.05, G:0.09, T:0.26
Consensus pattern (30 bp):
TGAAAATAATAAGAACAACAAATATTTAAA
Found at i:126132841 original size:38 final size:38
Alignment explanation
Indices: 126132790--126132867 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
126132780 AATTTGTTCA
126132790 TAGTACTAGATTAATAATAGAATTTAACCTAATGAAAT
1 TAGTACTAGATTAATAATAGAATTTAACCTAATGAAAT
126132828 TAGTACTAGATTAATAATAGAATTTAACCTAATGAAAT
1 TAGTACTAGATTAATAATAGAATTTAACCTAATGAAAT
126132866 TA
1 TA
126132868 ACTGTTAGTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.35
Consensus pattern (38 bp):
TAGTACTAGATTAATAATAGAATTTAACCTAATGAAAT
Found at i:126133399 original size:2 final size:2
Alignment explanation
Indices: 126133392--126133420 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
126133382 GCTTAAGAAT
126133392 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
126133421 TTATGTACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:126138846 original size:55 final size:55
Alignment explanation
Indices: 126138786--126138897 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 55
126138776 TCTAAAGTCT
*
126138786 GGTGATGTCCGTTGGGATTAAAGTGGAAGTCTTCGCAATCAAAATTTTCTTAAGA
1 GGTGATGTCCGTTGGGATTAAAGAGGAAGTCTTCGCAATCAAAATTTTCTTAAGA
126138841 GGTGATGTCCGTTGGGATTAAAGAGGAAGTCTTCGCAATCAAAATTTTCTTAAGA
1 GGTGATGTCCGTTGGGATTAAAGAGGAAGTCTTCGCAATCAAAATTTTCTTAAGA
126138896 GG
1 GG
126138898 ATGAAATTAA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.31
Consensus pattern (55 bp):
GGTGATGTCCGTTGGGATTAAAGAGGAAGTCTTCGCAATCAAAATTTTCTTAAGA
Found at i:126138925 original size:2 final size:2
Alignment explanation
Indices: 126138918--126138953 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
126138908 GGGTTAAAGC
126138918 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126138954 TTAGTGAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:126141436 original size:3 final size:3
Alignment explanation
Indices: 126141428--126141480 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
126141418 TATCTATACA
126141428 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
126141476 TAT TA
1 TAT TA
126141481 AGTTTTTAAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:126142186 original size:19 final size:20
Alignment explanation
Indices: 126142149--126142187 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
126142139 AACACATTTA
126142149 ATTACTCTTTTGAAAATTTTT
1 ATTACTCTTTT-AAAATTTTT
126142170 ATTACTCTTTT-AAATTTT
1 ATTACTCTTTTAAAATTTT
126142188 ATTGATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
21 11 0.61
ACGTcount: A:0.28, C:0.10, G:0.03, T:0.59
Consensus pattern (20 bp):
ATTACTCTTTTAAAATTTTT
Found at i:126144035 original size:26 final size:24
Alignment explanation
Indices: 126144005--126144054 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
126143995 AAATAAAAAA
*
126144005 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
126144031 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
126144055 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:126144074 original size:21 final size:20
Alignment explanation
Indices: 126144033--126144080 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
126144023 TCAAATATAT
* *
126144033 TTAAAAACATAAAAACAAATA
1 TTAAAAAAATAAAAA-TAATA
126144054 TTAAAACAAATAAAAATAATA
1 TTAAAA-AAATAAAAATAATA
*
126144075 CTAAAA
1 TTAAAA
126144081 TAATTCTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.71, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TTAAAAAAATAAAAATAATA
Found at i:126144554 original size:15 final size:15
Alignment explanation
Indices: 126144536--126144565 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
126144526 AAATTTTAAT
*
126144536 TTTTTATAGTTTATA
1 TTTTTATAATTTATA
126144551 TTTTTATAATTTATA
1 TTTTTATAATTTATA
126144566 AATGATTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (15 bp):
TTTTTATAATTTATA
Found at i:126146384 original size:96 final size:96
Alignment explanation
Indices: 126146220--126146404 Score: 255
Period size: 96 Copynumber: 1.9 Consensus size: 96
126146210 AAACATTTGA
* * * *
126146220 AAAATGCATAATTTTGAATTAACATACACATCTCACTCATTTTCTCTCCTCTTATCCTTCCAATT
1 AAAATGCATAATTTTAAACTAACACACACATCTCACTCATTTTCTCTCCTCTCATCCTTCCAATT
*
126146285 TGGAAATATTGGTTTTTAAGCATTAGGATGG
66 TGGAAAGATTGGTTTTTAAGCATTAGGATGG
* * * **
126146316 AAAATGTATAATTTTAAACTAACACACATATCTCTCTCATTTTCTCTCAC-CTCATGGTTCCAAT
1 AAAATGCATAATTTTAAACTAACACACACATCTCACTCATTTTCTCTC-CTCTCATCCTTCCAAT
*
126146380 TTGGAAGGATTGGTTTTTAAGCATT
65 TTGGAAAGATTGGTTTTTAAGCATT
126146405 CACTTTTCCA
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
96 76 0.99
97 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.39
Consensus pattern (96 bp):
AAAATGCATAATTTTAAACTAACACACACATCTCACTCATTTTCTCTCCTCTCATCCTTCCAATT
TGGAAAGATTGGTTTTTAAGCATTAGGATGG
Found at i:126149734 original size:13 final size:13
Alignment explanation
Indices: 126149716--126149741 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
126149706 TGTGTTGGTG
126149716 TGTTGTTTGCATA
1 TGTTGTTTGCATA
126149729 TGTTGTTTGCATA
1 TGTTGTTTGCATA
126149742 AAAATGATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.23, T:0.54
Consensus pattern (13 bp):
TGTTGTTTGCATA
Found at i:126152508 original size:21 final size:21
Alignment explanation
Indices: 126152475--126152535 Score: 95
Period size: 21 Copynumber: 2.9 Consensus size: 21
126152465 GAAGCCAAGG
* *
126152475 TTGCGACATTGATGTGTTGTA
1 TTGCAACACTGATGTGTTGTA
*
126152496 TTGCAACACTGATGTGTTGTG
1 TTGCAACACTGATGTGTTGTA
126152517 TTGCAACACTGATGTGTTG
1 TTGCAACACTGATGTGTTG
126152536 ACATTGATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.20, C:0.13, G:0.28, T:0.39
Consensus pattern (21 bp):
TTGCAACACTGATGTGTTGTA
Found at i:126152566 original size:21 final size:21
Alignment explanation
Indices: 126152540--126152581 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
126152530 GTGTTGACAT
126152540 TGATGTGTTGTATTGCAACAC
1 TGATGTGTTGTATTGCAACAC
*
126152561 TGATGTGTTGTGTTGCAACAC
1 TGATGTGTTGTATTGCAACAC
126152582 CGGTGCTTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.14, G:0.26, T:0.38
Consensus pattern (21 bp):
TGATGTGTTGTATTGCAACAC
Found at i:126156822 original size:17 final size:17
Alignment explanation
Indices: 126156781--126156840 Score: 65
Period size: 17 Copynumber: 3.6 Consensus size: 17
126156771 TCAATAAAGA
126156781 TATAA-TTTTATCATTTT
1 TATAATTTTTAT-ATTTT
*
126156798 AAT-A-TTTTATA-TTT
1 TATAATTTTTATATTTT
126156812 TATAATGTTTTATATTTT
1 TATAAT-TTTTATATTTT
126156830 TATAATTTTTA
1 TATAATTTTTA
126156841 AAAGATTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 5 0.14
15 2 0.05
16 7 0.19
17 14 0.38
18 9 0.24
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (17 bp):
TATAATTTTTATATTTT
Found at i:126156832 original size:8 final size:8
Alignment explanation
Indices: 126156781--126156840 Score: 52
Period size: 9 Copynumber: 7.2 Consensus size: 8
126156771 TCAATAAAGA
*
126156781 TATAATTT
1 TATATTTT
126156789 TATCATTTT
1 TAT-ATTTT
*
126156798 AATA-TTT
1 TATATTTT
126156805 TATA-TTT
1 TATATTTT
126156812 TATAATGTTT
1 TAT-AT-TTT
126156822 TATATTTT
1 TATATTTT
126156830 TATAATTTT
1 TAT-ATTTT
126156839 TA
1 TA
126156841 AAAGATTAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
7 12 0.27
8 11 0.25
9 15 0.34
10 6 0.14
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATATTTT
Found at i:126159148 original size:25 final size:27
Alignment explanation
Indices: 126159111--126159163 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
126159101 TCAAGCATGC
126159111 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
126159137 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
126159163 A
1 A
126159164 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:126160681 original size:26 final size:26
Alignment explanation
Indices: 126160651--126160706 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
126160641 TGAAATGCCC
126160651 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
126160677 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
126160703 ATCA
1 ATCA
126160707 ATTTTTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:126163866 original size:26 final size:25
Alignment explanation
Indices: 126163837--126164244 Score: 229
Period size: 26 Copynumber: 15.5 Consensus size: 25
126163827 TTTTAAACTG
* *
126163837 TATTATTTATTTTAATTTAATTTATA
1 TATTATTTATTTTAAATT-GTTTATA
* *
126163863 TATTATTTATATTAAACTGTTT-TA
1 TATTATTTATTTTAAATTGTTTATA
*
126163887 TATTATTTATTTTTAAATTGTTTTAGA
1 TATTATTTA-TTTTAAATTG-TTTATA
*
126163914 TATTTTTTATTTTAAATTGTTTCATA
1 TATTATTTATTTTAAATTGTTT-ATA
*
126163940 TATTATTTATTTTGAATTGCTTTATA
1 TATTATTTATTTTAAATTG-TTTATA
* *
126163966 CATTATTTTATTTTAAACTGTTATATA
1 TATTA-TTTATTTTAAATTGTT-TATA
* * *
126163993 TATTATTTATTTTAGATTTTTTCACA
1 TATTATTTATTTTAAATTGTTT-ATA
** *
126164019 TATTATTTCTATTAAAAACTAT-TTTATG
1 TATTA-TT-TATTTTAAA-T-TGTTTATA
* *
126164047 TATTGTTTATTTAAAATTGCTTTA-A
1 TATTATTTATTTTAAATTG-TTTATA
* *
126164072 -ATTATTTATTTCAAATTGTTTTGTA
1 TATTATTTATTTTAAATTG-TTTATA
* * *
126164097 TTTTATTTGTATTAAAATT-TTTAT-
1 TATTATTTAT-TTTAAATTGTTTATA
* * *
126164121 TATTGTTTATTTTGAACCATT-TTTTTG
1 TATTATTTATTTT-AA--ATTGTTTATA
* *
126164148 TATTATTTATTTTAATTTTTTTATTTTTTCACA
1 TATTATTTATTTTAA-------ATTGTTT-ATA
*
126164181 TATTATTTATTTCAAACTT-TTTATA
1 TATTATTTATTTTAAA-TTGTTTATA
* *
126164206 TATTATTTACTTCAAATTGTTTTATA
1 TATTATTTATTTTAAATTG-TTTATA
*
126164232 TATTATTTTTTTT
1 TATTATTTATTTT
126164245 TGTTTTCTTT
Statistics
Matches: 299, Mismatches: 52, Indels: 62
0.72 0.13 0.15
Matches are distributed among these distances:
23 2 0.01
24 42 0.14
25 38 0.13
26 124 0.41
27 57 0.19
28 11 0.04
29 4 0.01
30 1 0.00
31 3 0.01
32 3 0.01
33 14 0.05
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (25 bp):
TATTATTTATTTTAAATTGTTTATA
Found at i:126163975 original size:53 final size:51
Alignment explanation
Indices: 126163837--126164092 Score: 202
Period size: 53 Copynumber: 4.9 Consensus size: 51
126163827 TTTTAAACTG
* *
126163837 TATTATTTATTTTAATTTAATTTATATATTA-TTTATATTAAACTGTTT-TA
1 TATTATTTATTTTAA-TTGATTTATATATTATTTTATTTTAAACTGTTTATA
* * *
126163887 TATTATTTATTTTTAAATTGTTTTAGATATT-TTTTATTTTAAATTGTTTCATA
1 TATTATTTA-TTTT-AATTGATTTATATATTATTTTATTTTAAACTGTTT-ATA
* *
126163940 TATTATTTATTTTGAATTGCTTTATACATTATTTTATTTTAAACTGTTATATA
1 TATTATTTATTTT-AATTGATTTATATATTATTTTATTTTAAACTGTT-TATA
* * ** * *
126163993 TATTATTTATTTTAGATT-TTTTCACATATTATTTCTATTAAAAACTATTTTATG
1 TATTATTTATTTTA-ATTGATTT-ATATATTATTT-TATTTTAAACT-GTTTATA
* * * * *
126164047 TATTGTTTATTTAAAATTGCTTTA-A-ATTA-TTTATTTCAAATTGTTT
1 TATTATTTATTT-TAATTGATTTATATATTATTTTATTTTAAACTGTTT
126164093 TGTATTTTAT
Statistics
Matches: 169, Mismatches: 24, Indels: 27
0.77 0.11 0.12
Matches are distributed among these distances:
49 3 0.02
50 17 0.10
51 32 0.19
52 27 0.16
53 56 0.33
54 28 0.17
55 6 0.04
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.60
Consensus pattern (51 bp):
TATTATTTATTTTAATTGATTTATATATTATTTTATTTTAAACTGTTTATA
Found at i:126164002 original size:79 final size:77
Alignment explanation
Indices: 126163837--126164034 Score: 220
Period size: 79 Copynumber: 2.5 Consensus size: 77
126163827 TTTTAAACTG
* *
126163837 TATTATTTATTTTAATTTAATTT-ATATATTATTTATATTAAACTGTTTTATATTATTTATTTTT
1 TATTATTTATTTTAAATT-ATTTCATATATTATTTATATTAAACTGTTTTACATTATTTATTTTT
* *
126163901 AAATTGTTTTAGA
65 AAACTGTTATAGA
* * * * *
126163914 TATTTTTTATTTTAAATTGTTTCATATATTATTTATTTTGAATTGCTTTATACATTATTT-TATT
1 TATTATTTATTTTAAATTATTTCATATATTATTTATATTAAACTG-TTT-TACATTATTTAT-TT
*
126163978 TTAAACTGTTATATA
63 TTAAACTGTTATAGA
* * * *
126163993 TATTATTTATTTTAGATTTTTTCACATATTATTTCTATTAAA
1 TATTATTTATTTTAAATTATTTCATATATTATTTATATTAAA
126164035 AACTATTTTA
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
76 3 0.03
77 35 0.35
78 4 0.04
79 58 0.58
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (77 bp):
TATTATTTATTTTAAATTATTTCATATATTATTTATATTAAACTGTTTTACATTATTTATTTTTA
AACTGTTATAGA
Found at i:126164208 original size:25 final size:26
Alignment explanation
Indices: 126164180--126164239 Score: 95
Period size: 25 Copynumber: 2.3 Consensus size: 26
126164170 ATTTTTTCAC
*
126164180 ATATTATTTATTTCAAACT-TTTTAT
1 ATATTATTTACTTCAAACTGTTTTAT
*
126164205 ATATTATTTACTTCAAATTGTTTTAT
1 ATATTATTTACTTCAAACTGTTTTAT
126164231 ATATTATTT
1 ATATTATTT
126164240 TTTTTTGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 17 0.53
26 15 0.47
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.60
Consensus pattern (26 bp):
ATATTATTTACTTCAAACTGTTTTAT
Found at i:126165547 original size:17 final size:17
Alignment explanation
Indices: 126165512--126165548 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
126165502 TCAAAGTAAG
*
126165512 AAACAAACCAATTGGGA
1 AAACAAACCAATTAGGA
*
126165529 AAACAAACCAATTATGA
1 AAACAAACCAATTAGGA
126165546 AAA
1 AAA
126165549 ATATCTAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.59, C:0.16, G:0.11, T:0.14
Consensus pattern (17 bp):
AAACAAACCAATTAGGA
Found at i:126167850 original size:3 final size:3
Alignment explanation
Indices: 126167836--126168238 Score: 237
Period size: 3 Copynumber: 133.3 Consensus size: 3
126167826 TAATACATTC
* * * *
126167836 ATT ATT ACT ATT ATT ATT ATT -TT CACT ATT ACT ATT ATT TTCT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT AT-T ATT
* *
126167882 ATT ATT ATT ATT GTT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
126167930 ATT CTT GTT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
126167978 ATT -TT -TT A-T ATT ATT ATT -TAT ATT GTT GTT TTT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT
* * *
126168020 ATT CTAG ATT -TT ATT ATT AATGT ATT ATT ATT CTT CATT -TT -TT ATTT
1 ATT AT-T ATT ATT ATT ATT -AT-T ATT ATT ATT ATT -ATT ATT ATT A-TT
* * * *
126168067 ATT ATT -TT CCATT ATT ATC ATT GTT ATT -TT -TT ACT ATT AGT ATTT
1 ATT ATT ATT --ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT
* * * **
126168112 ATT ATC AAT ATT ATT ATT ATC ATT GCT ATT -TT -TT ATT -TCT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT
* * * * *
126168155 ACT ATT ATT ATT ATT A-C ATT AAAT ATT -TT ATT -TT CTT ATTT ACTC
1 ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT A-TT A-TT
126168200 ACGTT ATT ATT ATT ATTT ATT ACCTT ATT ATT ATT ATT A
1 A--TT ATT ATT ATT A-TT ATT A--TT ATT ATT ATT ATT A
126168239 CCCTTTTATT
Statistics
Matches: 312, Mismatches: 57, Indels: 62
0.72 0.13 0.14
Matches are distributed among these distances:
2 31 0.10
3 246 0.79
4 27 0.09
5 8 0.03
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:126167851 original size:24 final size:24
Alignment explanation
Indices: 126167824--126167874 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
126167814 TATTATTAAA
*
126167824 ATTAATACATTCATTATTACTATT
1 ATTAATACATTCACTATTACTATT
* **
126167848 ATTATTATTTTCACTATTACTATT
1 ATTAATACATTCACTATTACTATT
126167872 ATT
1 ATT
126167875 TTCTATTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.12, G:0.00, T:0.55
Consensus pattern (24 bp):
ATTAATACATTCACTATTACTATT
Found at i:126168243 original size:18 final size:17
Alignment explanation
Indices: 126168206--126168253 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 17
126168196 ACTCACGTTA
126168206 TTATTATTATTTATTACC
1 TTATTATTA-TTATTACC
126168224 TTATTATTATTATTACCC
1 TTATTATTATTATTA-CC
126168242 TT-TTATT-TTATT
1 TTATTATTATTATT
126168254 TTATTTTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.17
17 11 0.38
18 13 0.45
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTATTATTATTACC
Found at i:126174916 original size:44 final size:44
Alignment explanation
Indices: 126174845--126175112 Score: 241
Period size: 44 Copynumber: 5.8 Consensus size: 44
126174835 TCACGGCGAA
* * *
126174845 TCTTATCTCCTTGAAGTTGCAGGGGAGCAGATTGAAGCCACAAG
1 TCTTATCTCCCTGAAGTTACAGCGGAGCAGATTGAAGCCACAAG
* **
126174889 TCTTATCTCCCTGAAGTTACAGCGGAGCAGACTGAAGATAACGAA-
1 TCTTATCTCCCTGAAGTTACAGCGGAGCAGATTGAAG-CCAC-AAG
* * * * ** *
126174934 TCTTATTTCCCTGACGTTTCAGTGGAATAGATTGAAGCTACAAATTATGGTAG
1 TCTTATCTCCCTGAAGTTACAGCGGAGCAGATTGAAGC--C--A-CA----AG
* * **
126174987 ATCTTATCTCCTTGAAGTTGCAGTAGAGCAGATTGAAGCCACAAG
1 -TCTTATCTCCCTGAAGTTACAGCGGAGCAGATTGAAGCCACAAG
* *
126175032 TCTTATCTCCCTGAAGTTTCAGCGGAGCAGATTGAAGTCACAAG
1 TCTTATCTCCCTGAAGTTACAGCGGAGCAGATTGAAGCCACAAG
*
126175076 TCTTATCTCCCTGAAGTTACAGCGAAGCAGATTGAAG
1 TCTTATCTCCCTGAAGTTACAGCGGAGCAGATTGAAG
126175113 ACAGAGAATT
Statistics
Matches: 180, Mismatches: 31, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
44 107 0.59
45 34 0.19
46 2 0.01
48 2 0.01
49 1 0.01
50 1 0.01
52 2 0.01
54 31 0.17
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTACAGCGGAGCAGATTGAAGCCACAAG
Found at i:126175160 original size:187 final size:187
Alignment explanation
Indices: 126174845--126175239 Score: 582
Period size: 187 Copynumber: 2.1 Consensus size: 187
126174835 TCACGGCGAA
* *
126174845 TCTTATCTCCTTGAAGTTGCAGGGGAGCAGATTGAAGCCACAAGTCTTATCTCCCTGAAGTTACA
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCACAAGTCTTATCTCCCTGAAGTTACA
* * *
126174910 GCGGAGCAGACTGAAGATAACGAATCTTATTTCCCTGACGTTTCAGTGGAATAGATTGAAGCTAC
66 GCGAAGCAGACTGAAGACAACGAATCTTATTTCCCTGACGTTTCAGTGGAACAGATTGAAGCTAC
* *
126174975 AAATTATGGTAGATCTTATCTCCT-TGAAGTTGCAGT-AGAGCAGATTGAAGCCACAAG
131 AAATTATGGCAGATCTTAT-TCCTCTAAAGTTGCAGTGA-AGCAGATTGAAGCCACAAG
* *
126175032 TCTTATCTCCCTGAAGTTTCAGCGGAGCAGATTGAAGTCACAAGTCTTATCTCCCTGAAGTTACA
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCACAAGTCTTATCTCCCTGAAGTTACA
* *
126175097 GCGAAGCAGATTGAAGACAGA-GAATTTTATTTCCCTGACGTTGT-AGTGGAACAGATTGAAGCT
66 GCGAAGCAGACTGAAGACA-ACGAATCTTATTTCCCTGACGTT-TCAGTGGAACAGATTGAAGCT
* ** *
126175160 ACAAATTATGGCGGATCTTATTTTTCTAAAGTTGCAGTGAAGCAGATTGAAGCCACCAG
129 ACAAATTATGGCAGATCTTATTCCTCTAAAGTTGCAGTGAAGCAGATTGAAGCCACAAG
*
126175219 CCTTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCA
126175240 ATGGAGTAGA
Statistics
Matches: 187, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
186 2 0.01
187 182 0.97
188 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (187 bp):
TCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCACAAGTCTTATCTCCCTGAAGTTACA
GCGAAGCAGACTGAAGACAACGAATCTTATTTCCCTGACGTTTCAGTGGAACAGATTGAAGCTAC
AAATTATGGCAGATCTTATTCCTCTAAAGTTGCAGTGAAGCAGATTGAAGCCACAAG
Found at i:126175179 original size:143 final size:143
Alignment explanation
Indices: 126175032--126175587 Score: 618
Period size: 143 Copynumber: 3.9 Consensus size: 143
126175022 AAGCCACAAG
* * * * * *
126175032 TCTTATCTCCCTGAAGTTTCAGCGGAGCAGATTGAAGTCACAAGTCTTATCTCCCTGAAGTTACA
1 TCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACAAGCCTTATCTCCCTGAAGTTACA
* * * *
126175097 GCGAAGCAGATTGAAGACAGAGAATTTTATTTCCCTGACGTTGTAGTGGAACAGATTGAAGCTAC
66 ACGAAGCAGATTGAAGACAGAGAATCTTATTTCCCTAACGTTGCAGTGGAACAGATTGAAGCTAC
126175162 AAATTATGGCGGA
131 AAATTATGGCGGA
* * * * *
126175175 TCTTATTTTTCTAAAGTTGCAGTGAAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCA
1 TCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACAAGCCTTATCTCCCTGAAGTTACA
* * * * * * * * * *
126175240 ATGGAGTAGACTGAAGATAGCA-AATCTAATTTCCCTAAAGTGGTAGTAGAACAGATTGAAGCTA
66 ACGAAGCAGATTGAAGACAG-AGAATCTTATTTCCCTAACGTTGCAGTGGAACAGATTGAAGCTA
126175304 CAAATTATGGCGGA
130 CAAATTATGGCGGA
* * * * *
126175318 TCTCATCTTCCTGAAGTTGCAGTGGAGCATATTAAAGCCACCAGCCTTATCTCCCTGAAGTTACA
1 TCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACAAGCCTTATCTCCCTGAAGTTACA
* * * * * *
126175383 ACGGAGCAGATTGAAGATAGTGAATCTTATTTCCCTAACGTTGCAGTGGAATAGATTAAAGCTGC
66 ACGAAGCAGATTGAAGACAGAGAATCTTATTTCCCTAACGTTGCAGTGGAACAGATTGAAGCTAC
* *
126175448 AAATCATGGCGAA
131 AAATTATGGCGGA
* * * *
126175461 TCTTATCTTCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACCAA-CCCTATCTCCCTAAAGTT-G
1 TCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCA-CAAGCCTTATCTCCCTGAAGTTAC
* * * *
126175524 TA-GTAGAGTAGATTGAAGACA-ACGAATCTTATTTCCCTAATGTTGCAGTGGAGCAGATTGAAG
65 AACG-A-AGCAGATTGAAGACAGA-GAATCTTATTTCCCTAACGTTGCAGTGGAACAGATTGAAG
126175587 C
127 C
126175588 CACCAGCCTT
Statistics
Matches: 344, Mismatches: 63, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
141 1 0.00
142 1 0.00
143 339 0.99
144 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (143 bp):
TCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACAAGCCTTATCTCCCTGAAGTTACA
ACGAAGCAGATTGAAGACAGAGAATCTTATTTCCCTAACGTTGCAGTGGAACAGATTGAAGCTAC
AAATTATGGCGGA
Found at i:126175527 original size:44 final size:44
Alignment explanation
Indices: 126175462--126175612 Score: 185
Period size: 44 Copynumber: 3.4 Consensus size: 44
126175452 CATGGCGAAT
*
126175462 CTTATCTTCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACCAAC
1 CTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACCAAC
* * * * * *
126175506 CCTATCTCCCTAAAGTTGTAGTAGAGTAGATTGAAGACAACGAAT
1 CTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAG-CCACCAAC
* * * *
126175551 CTTATTTCCCTAATGTTGCAGTGGAGCAGATTGAAGCCACCAGC
1 CTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACCAAC
*
126175595 CTTATCTCCCTGAAGTTG
1 CTTATCTCCCTAAAGTTG
126175613 CAGCGAAACA
Statistics
Matches: 86, Mismatches: 20, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
44 51 0.59
45 35 0.41
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (44 bp):
CTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACCAAC
Found at i:126175560 original size:286 final size:286
Alignment explanation
Indices: 126175036--126175587 Score: 744
Period size: 286 Copynumber: 1.9 Consensus size: 286
126175026 CACAAGTCTT
* * * * *
126175036 ATCTCCCTGAAGTTTCAGCGGAGCAGATTGAAGTCACAAGTCTTATCTCCCTGAAGTTACAGCGA
1 ATCTCCCTGAAGTTGCAGCGGAGCAGATTAAAGCCACAAGCCTTATCTCCCTGAAGTTACAACGA
* * * *
126175101 AGCAGATTGAAGACAGAGAATTTTATTTCCCTGACGTTGTAGTGGAACAGATTGAAGCTACAAAT
66 AGCAGATTGAAGACAGAGAATCTTATTTCCCTAACGTTGCAGTGGAACAGATTAAAGCTACAAAT
* * * * * *
126175166 TATGGCGGATCTTATTTTTCTAAAGTTGCAGTGAAGCAGATTGAAGCCACCAGCCTTATCTCCCT
131 CATGGCGAATCTTATCTTCCTAAAGTTGCAGTGAAGCAGATTGAAGCCACCAACCCTATCTCCCT
* * * * *
126175231 GAAGTTGCAATGGAGTAGACTGAAGATAGCAAATCTAATTTCCCTAAAGTGGTAGTAGAACAGAT
196 AAAGTTGCAATAGAGTAGACTGAAGACAACAAATCTAATTTCCCTAAAGTGGCAGTAGAACAGAT
126175296 TGAAGCTACAAATTATGGCGGATCTC
261 TGAAGCTACAAATTATGGCGGATCTC
* * * * *
126175322 ATCTTCCTGAAGTTGCAGTGGAGCATATTAAAGCCACCAGCCTTATCTCCCTGAAGTTACAACGG
1 ATCTCCCTGAAGTTGCAGCGGAGCAGATTAAAGCCACAAGCCTTATCTCCCTGAAGTTACAACGA
* * * *
126175387 AGCAGATTGAAGATAGTGAATCTTATTTCCCTAACGTTGCAGTGGAATAGATTAAAGCTGCAAAT
66 AGCAGATTGAAGACAGAGAATCTTATTTCCCTAACGTTGCAGTGGAACAGATTAAAGCTACAAAT
* *
126175452 CATGGCGAATCTTATCTTCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACCAACCCTATCTCCCT
131 CATGGCGAATCTTATCTTCCTAAAGTTGCAGTGAAGCAGATTGAAGCCACCAACCCTATCTCCCT
* * * * * * * * *
126175517 AAAGTTGTAGTAGAGTAGATTGAAGACAACGAATCTTATTTCCCTAATGTTGCAGTGGAGCAGAT
196 AAAGTTGCAATAGAGTAGACTGAAGACAACAAATCTAATTTCCCTAAAGTGGCAGTAGAACAGAT
126175582 TGAAGC
261 TGAAGC
126175588 CACCAGCCTT
Statistics
Matches: 226, Mismatches: 40, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
286 226 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (286 bp):
ATCTCCCTGAAGTTGCAGCGGAGCAGATTAAAGCCACAAGCCTTATCTCCCTGAAGTTACAACGA
AGCAGATTGAAGACAGAGAATCTTATTTCCCTAACGTTGCAGTGGAACAGATTAAAGCTACAAAT
CATGGCGAATCTTATCTTCCTAAAGTTGCAGTGAAGCAGATTGAAGCCACCAACCCTATCTCCCT
AAAGTTGCAATAGAGTAGACTGAAGACAACAAATCTAATTTCCCTAAAGTGGCAGTAGAACAGAT
TGAAGCTACAAATTATGGCGGATCTC
Found at i:126175582 original size:45 final size:44
Alignment explanation
Indices: 126175457--126175587 Score: 156
Period size: 45 Copynumber: 3.0 Consensus size: 44
126175447 CAAATCATGG
*
126175457 CGAATCTTATCTT-CCTAAAGTTGTAGTGGAGCAGATTGAAGCCA
1 CGAATCTTAT-TTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCAA
* * * * * *
126175501 CCAACCCTATCTCCCTAAAGTTGTAGTAGAGTAGATTGAAGACAA
1 CGAATCTTATTTCCCTAAAGTTGTAGTGGAGCAGATTGAAG-CAA
* *
126175546 CGAATCTTATTTCCCTAATGTTGCAGTGGAGCAGATTGAAGC
1 CGAATCTTATTTCCCTAAAGTTGTAGTGGAGCAGATTGAAGC
126175588 CACCAGCCTT
Statistics
Matches: 70, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
43 1 0.01
44 34 0.49
45 35 0.50
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (44 bp):
CGAATCTTATTTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCAA
Found at i:126175613 original size:44 final size:44
Alignment explanation
Indices: 126175462--126175711 Score: 175
Period size: 44 Copynumber: 5.6 Consensus size: 44
126175452 CATGGCGAAT
* * *
126175462 CTTATCTTCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACCAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAAC
* * * * * * * *
126175506 CCTATCTCCCTAAAGTTGTAGTAGAGTAGATTGAAGACAACGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-CCACCAAC
* *
126175551 CTTATTTCCCT-AATGTTGCAGTGGAGCAGATTGAAGCCACCAGC
1 CTTATCTCCCTGAA-GTTGCAGTGGAGCAGATTGAAGCCACCAAC
* * * * * *
126175595 CTTATCTCCCTGAAGTTGCAGCGAAACAGATTAAAGCTACAAGTCATC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC--C-A-CCAAC
* * ** *
126175643 CTTATCTCCCTGAAGTTACAG-GAGAGCACGA--AAATACACAAAC
1 CTTATCTCCCTGAAGTTGCAGTG-GAGCA-GATTGAAGCCACCAAC
*
126175686 CTTATCTTCCTGAAGTTGCAGTGGAG
1 CTTATCTCCCTGAAGTTGCAGTGGAG
126175712 TAGGCTGAAA
Statistics
Matches: 163, Mismatches: 33, Indels: 21
0.75 0.15 0.10
Matches are distributed among these distances:
43 24 0.15
44 69 0.42
45 36 0.22
46 1 0.01
47 5 0.03
48 26 0.16
49 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAAC
Found at i:126175626 original size:89 final size:89
Alignment explanation
Indices: 126175457--126175626 Score: 227
Period size: 89 Copynumber: 1.9 Consensus size: 89
126175447 CAAATCATGG
*
126175457 CGAATCTTATCTTCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACCAACCCTATCTCCCTAAAGT
1 CGAATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAACCCTATCTCCCTAAAGT
* * **
126175522 TGTAGTAGAGTAGATTGAAGACAA
66 TGCAGGAGAACAGATTGAAGACAA
* * * *
126175546 CGAATCTTAT-TTCCCTAATGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAG
1 CGAATCTTATCTT-CCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAACCCTATCTCCCTAAAG
126175610 TTGCAGCGA-AACAGATT
65 TTGCAG-GAGAACAGATT
126175627 AAAGCTACAA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
88 2 0.03
89 67 0.96
90 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (89 bp):
CGAATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAACCCTATCTCCCTAAAGT
TGCAGGAGAACAGATTGAAGACAA
Found at i:126177219 original size:3 final size:3
Alignment explanation
Indices: 126177213--126177436 Score: 153
Period size: 3 Copynumber: 75.7 Consensus size: 3
126177203 TCACTATTTC
*
126177213 TAT TAT TTT CTAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
126177258 T-T TA- TAT TAT TAT T-T ATAT TTT TGT TGT TAT TAT TAT TAT TCCT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT T-AT
* * * *
126177302 GAT T-T TAT TAT TAT TAT TCT TCAT T-T TTT TATT TAT TAT TTT CTAT
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TA-T TAT TAT TAT -TAT
* * * *
126177348 TAT TAT TAT TGT TAT T-T T-T TAC TAT TAT TATT TAT TAT CAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT
* ** * *
126177392 TAT TAT TAT CAT TGC TAT T-T T-T TAT TTT TAT TAC TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
126177437 CATTAAATAT
Statistics
Matches: 175, Mismatches: 32, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
2 19 0.11
3 142 0.81
4 14 0.08
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:126177448 original size:37 final size:38
Alignment explanation
Indices: 126177375--126177453 Score: 92
Period size: 37 Copynumber: 2.2 Consensus size: 38
126177365 TTTACTATTA
**
126177375 TTATTTATTATCAATATTATTATTATCATTGCTATTTT
1 TTATTTATTATCAATATTATTATTATCATTAATATTTT
* * *
126177413 TTATTT-TTATTACTATTATTATTA-CATTAA-ATATT
1 TTATTTATTATCAATATTATTATTATCATTAATATTTT
126177448 TTATTT
1 TTATTT
126177454 TCTTATTTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
35 10 0.28
36 4 0.11
37 16 0.44
38 6 0.17
ACGTcount: A:0.30, C:0.06, G:0.01, T:0.62
Consensus pattern (38 bp):
TTATTTATTATCAATATTATTATTATCATTAATATTTT
Found at i:126181460 original size:28 final size:27
Alignment explanation
Indices: 126181408--126181460 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
126181398 CTATTCAGAA
* *
126181408 ATCAGTGTTAACTAGGCCTTAGCCCAT
1 ATCAGTATTAACTAGGCCATAGCCCAT
*
126181435 ATCAGTATTAATCTGGGCCATAGCCC
1 ATCAGTATTAA-CTAGGCCATAGCCC
126181461 CTTACAGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
ATCAGTATTAACTAGGCCATAGCCCAT
Found at i:126181545 original size:60 final size:59
Alignment explanation
Indices: 126181422--126181556 Score: 157
Period size: 60 Copynumber: 2.2 Consensus size: 59
126181412 GTGTTAACTA
* *
126181422 GGCCTTAGCCCATATCAGTATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTATACTG
1 GGCC-TAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGT-ACAGAGTATACTG
* * *
126181483 GGCCTAGCCCATATCAGTATCAATCTGGGTCGTAGCCCTATTACAAGT-C-GAGATATATTG
1 GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TATACTG
*
126181543 GGCCTTGCCCATAT
1 GGCCTAGCCCATAT
126181557 TAACACAGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
59 3 0.05
60 51 0.78
61 8 0.12
62 3 0.05
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (59 bp):
GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGTACAGAGTATACTG
Found at i:126181592 original size:19 final size:20
Alignment explanation
Indices: 126181549--126181604 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
126181539 ATTGGGCCTT
126181549 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
126181569 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
* *
126181588 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
126181605 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:126183767 original size:19 final size:18
Alignment explanation
Indices: 126183730--126183773 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
126183720 ATACATACAG
126183730 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
126183747 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
126183766 TACTAATT
1 TAATAATT
126183774 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:126185502 original size:20 final size:20
Alignment explanation
Indices: 126185477--126185516 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
126185467 TTGTCCACGA
126185477 ACCACAAATTAAGTTTAAGT
1 ACCACAAATTAAGTTTAAGT
126185497 ACCACAAATTAAGTTTAAGT
1 ACCACAAATTAAGTTTAAGT
126185517 CTATTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (20 bp):
ACCACAAATTAAGTTTAAGT
Found at i:126185966 original size:28 final size:27
Alignment explanation
Indices: 126185914--126185966 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
126185904 CTATTCAGAA
* *
126185914 ATCAGTGTTAACTAGGCCTTAGCCCAT
1 ATCAGTATTAACTAGGCCATAGCCCAT
*
126185941 ATCAGTATTAATCTGGGCCATAGCCC
1 ATCAGTATTAA-CTAGGCCATAGCCC
126185967 CTTACAGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
ATCAGTATTAACTAGGCCATAGCCCAT
Found at i:126186097 original size:19 final size:20
Alignment explanation
Indices: 126186054--126186109 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
126186044 ATTGGGCCTT
126186054 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
126186074 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
* *
126186093 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
126186110 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:126188277 original size:19 final size:18
Alignment explanation
Indices: 126188240--126188283 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
126188230 ATACATACAG
126188240 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
126188257 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
126188276 TACTAATT
1 TAATAATT
126188284 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:126190275 original size:3 final size:3
Alignment explanation
Indices: 126190269--126190473 Score: 130
Period size: 3 Copynumber: 67.7 Consensus size: 3
126190259 TGTTGTGTCG
* * *
126190269 TTA TTA TTA TTA TTA TTA TAA TAA TTA TT- TTT TTCA TGTA TATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A T-TA T-TA TTA
* ** * *
126190316 TTA TT- TATA TTA TTG TTA TTA TTA CCA TTA TTA ATA TTC TTA TTA
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * * * * * *
126190361 TTA GCA GTG TTT TTA TTCC TT- TTA TTA TTTA TTA TTA TCA ATA -TA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* ** * **
126190406 TTA TTA TTA CTA TCG TTG CCA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
126190454 TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TT
126190474 TTAAATTGCT
Statistics
Matches: 158, Mismatches: 35, Indels: 18
0.75 0.17 0.09
Matches are distributed among these distances:
2 7 0.04
3 138 0.87
4 12 0.08
5 1 0.01
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:126190621 original size:17 final size:17
Alignment explanation
Indices: 126190585--126190623 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
126190575 TTTATTTTCT
* **
126190585 TATTACTTATCTATTTA
1 TATTTCTTATCTATCCA
126190602 TATTTCTTATCTATCCA
1 TATTTCTTATCTATCCA
126190619 TATTT
1 TATTT
126190624 TCGTTATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTTCTTATCTATCCA
Found at i:126194816 original size:19 final size:19
Alignment explanation
Indices: 126194792--126194872 Score: 90
Period size: 19 Copynumber: 3.9 Consensus size: 19
126194782 ATAATCTTTA
126194792 AGGATATGCAATCTTAGAT
1 AGGATATGCAATCTTAGAT
126194811 AGGATATGCAATCTTAATCTTAGAT
1 AGGATATG----C--AATCTTAGAT
*
126194836 ATGATATGCAATCTTAGAT
1 AGGATATGCAATCTTAGAT
*
126194855 ATGATATGCAATCTTAGA
1 AGGATATGCAATCTTAGA
126194873 AGATATGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 12
0.81 0.01 0.18
Matches are distributed among these distances:
19 36 0.65
21 1 0.02
23 1 0.02
25 17 0.31
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (19 bp):
AGGATATGCAATCTTAGAT
Done.